2025-08-30T22:33:05,303 Created temporary directory: /tmp/pip-build-tracker-2rex2rz7 2025-08-30T22:33:05,304 Initialized build tracking at /tmp/pip-build-tracker-2rex2rz7 2025-08-30T22:33:05,305 Created build tracker: /tmp/pip-build-tracker-2rex2rz7 2025-08-30T22:33:05,305 Entered build tracker: /tmp/pip-build-tracker-2rex2rz7 2025-08-30T22:33:05,306 Created temporary directory: /tmp/pip-wheel-xgoaj3dw 2025-08-30T22:33:05,310 Created temporary directory: /tmp/pip-ephem-wheel-cache-8v58ca5f 2025-08-30T22:33:05,356 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-08-30T22:33:05,359 2 location(s) to search for versions of pancg: 2025-08-30T22:33:05,359 * https://pypi.org/simple/pancg/ 2025-08-30T22:33:05,359 * https://www.piwheels.org/simple/pancg/ 2025-08-30T22:33:05,359 Fetching project page and analyzing links: https://pypi.org/simple/pancg/ 2025-08-30T22:33:05,360 Getting page https://pypi.org/simple/pancg/ 2025-08-30T22:33:05,362 Found index url https://pypi.org/simple/ 2025-08-30T22:33:05,509 Fetched page https://pypi.org/simple/pancg/ as application/vnd.pypi.simple.v1+json 2025-08-30T22:33:05,511 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/a2/45/e3fd5cd4a56e69b291ff5e519bf346b77609742bd8ef66ae61dce7961871/panCG-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:33:05,512 Found link https://files.pythonhosted.org/packages/f6/bb/7c1262dc432abdbdfd2aba18ca30abd9c9ac4aa8a218d96cdde85429cfd1/panCG-0.0.1.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.1 2025-08-30T22:33:05,513 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/0c/4d/fc54b1f1f6ae673df2b9561772e2138a0b0029c3f86e7012433ac457b1aa/pancg-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:33:05,513 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/09/3d/b4ed10d1d0a6ad788488a4433fcf59dd558399c8a6183b3ae8ee89cebc87/panCG-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:33:05,514 Found link https://files.pythonhosted.org/packages/65/1d/eab825ad54372ffee87f0d09edc56e8943bf074c0905345c89c8015fa87e/pancg-0.0.2.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.2 2025-08-30T22:33:05,514 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/16/24/a80c172885b2e2881f864c35835b7f0f49d185fb9fc052381b0d0284c805/panCG-0.0.3-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:33:05,515 Found link https://files.pythonhosted.org/packages/14/dc/5af263c2f114f390b318cef7d429678753528e03484c0dd833c1d90526de/pancg-0.0.3.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.3 2025-08-30T22:33:05,516 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/54/ca/c32ec74e3a36f89c15c3e93ceddfac96dab5dfddd53271b590ac7646f634/panCG-0.0.4-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:33:05,516 Found link https://files.pythonhosted.org/packages/62/fa/65008f0f404edefd52eaa52babfa4fff9874cb06c9eaefe4c74f14822cbf/pancg-0.0.4.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.4 2025-08-30T22:33:05,517 Fetching project page and analyzing links: https://www.piwheels.org/simple/pancg/ 2025-08-30T22:33:05,518 Getting page https://www.piwheels.org/simple/pancg/ 2025-08-30T22:33:05,519 Found index url https://www.piwheels.org/simple/ 2025-08-30T22:33:05,692 Fetched page https://www.piwheels.org/simple/pancg/ as text/html 2025-08-30T22:33:05,693 Skipping link: No binaries permitted for pancg: https://www.piwheels.org/simple/pancg/pancg-0.0.2-py3-none-any.whl#sha256=faf9ca620ae38ff1b3270ec2838ebbc1eef11e0d81ac3aea0da607c3a9ec37a0 (from https://www.piwheels.org/simple/pancg/) 2025-08-30T22:33:05,694 Skipping link: No binaries permitted for pancg: https://www.piwheels.org/simple/pancg/pancg-0.0.1-py3-none-any.whl#sha256=19103c1af11e38ce849aae162f58e23ac16f541dfc384c48dbfdb7c092fb65ce (from https://www.piwheels.org/simple/pancg/) 2025-08-30T22:33:05,695 Skipping link: not a file: https://www.piwheels.org/simple/pancg/ 2025-08-30T22:33:05,695 Skipping link: not a file: https://pypi.org/simple/pancg/ 2025-08-30T22:33:05,713 Given no hashes to check 1 links for project 'pancg': discarding no candidates 2025-08-30T22:33:05,715 Collecting pancg==0.0.4 2025-08-30T22:33:05,717 Created temporary directory: /tmp/pip-unpack-6ytzc5p3 2025-08-30T22:33:05,936 Downloading pancg-0.0.4.tar.gz (71 kB) 2025-08-30T22:33:06,093 Added pancg==0.0.4 from https://files.pythonhosted.org/packages/62/fa/65008f0f404edefd52eaa52babfa4fff9874cb06c9eaefe4c74f14822cbf/pancg-0.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-2rex2rz7' 2025-08-30T22:33:06,095 Running setup.py (path:/tmp/pip-wheel-xgoaj3dw/pancg_70b38296bbe24166b12a3e2f20f4d8d8/setup.py) egg_info for package pancg 2025-08-30T22:33:06,096 Created temporary directory: /tmp/pip-pip-egg-info-k62kxxyh 2025-08-30T22:33:06,096 Preparing metadata (setup.py): started 2025-08-30T22:33:06,097 Running command python setup.py egg_info 2025-08-30T22:33:06,952 running egg_info 2025-08-30T22:33:06,980 creating /tmp/pip-pip-egg-info-k62kxxyh/panCG.egg-info 2025-08-30T22:33:06,980 writing /tmp/pip-pip-egg-info-k62kxxyh/panCG.egg-info/PKG-INFO 2025-08-30T22:33:06,984 writing dependency_links to /tmp/pip-pip-egg-info-k62kxxyh/panCG.egg-info/dependency_links.txt 2025-08-30T22:33:06,986 writing entry points to /tmp/pip-pip-egg-info-k62kxxyh/panCG.egg-info/entry_points.txt 2025-08-30T22:33:06,988 writing requirements to /tmp/pip-pip-egg-info-k62kxxyh/panCG.egg-info/requires.txt 2025-08-30T22:33:06,989 writing top-level names to /tmp/pip-pip-egg-info-k62kxxyh/panCG.egg-info/top_level.txt 2025-08-30T22:33:06,990 writing manifest file '/tmp/pip-pip-egg-info-k62kxxyh/panCG.egg-info/SOURCES.txt' 2025-08-30T22:33:07,105 reading manifest file '/tmp/pip-pip-egg-info-k62kxxyh/panCG.egg-info/SOURCES.txt' 2025-08-30T22:33:07,107 adding license file 'LICENSE' 2025-08-30T22:33:07,110 writing manifest file '/tmp/pip-pip-egg-info-k62kxxyh/panCG.egg-info/SOURCES.txt' 2025-08-30T22:33:07,215 Preparing metadata (setup.py): finished with status 'done' 2025-08-30T22:33:07,220 Source in /tmp/pip-wheel-xgoaj3dw/pancg_70b38296bbe24166b12a3e2f20f4d8d8 has version 0.0.4, which satisfies requirement pancg==0.0.4 from https://files.pythonhosted.org/packages/62/fa/65008f0f404edefd52eaa52babfa4fff9874cb06c9eaefe4c74f14822cbf/pancg-0.0.4.tar.gz 2025-08-30T22:33:07,221 Removed pancg==0.0.4 from https://files.pythonhosted.org/packages/62/fa/65008f0f404edefd52eaa52babfa4fff9874cb06c9eaefe4c74f14822cbf/pancg-0.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-2rex2rz7' 2025-08-30T22:33:07,229 Created temporary directory: /tmp/pip-unpack-_wipd6rd 2025-08-30T22:33:07,230 Created temporary directory: /tmp/pip-unpack-3hgkftdi 2025-08-30T22:33:07,231 Building wheels for collected packages: pancg 2025-08-30T22:33:07,235 Created temporary directory: /tmp/pip-wheel-h0ofix2s 2025-08-30T22:33:07,236 DEPRECATION: Building 'pancg' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pancg'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-08-30T22:33:07,237 Building wheel for pancg (setup.py): started 2025-08-30T22:33:07,238 Destination directory: /tmp/pip-wheel-h0ofix2s 2025-08-30T22:33:07,239 Running command python setup.py bdist_wheel 2025-08-30T22:33:08,055 running bdist_wheel 2025-08-30T22:33:08,184 running build 2025-08-30T22:33:08,184 running build_py 2025-08-30T22:33:08,213 creating build/lib/panCG 2025-08-30T22:33:08,216 copying panCG/__init__.py -> build/lib/panCG 2025-08-30T22:33:08,218 copying panCG/panCG.py -> build/lib/panCG 2025-08-30T22:33:08,221 creating build/lib/panCG/bin 2025-08-30T22:33:08,223 copying panCG/bin/cnsClustering.py -> build/lib/panCG/bin 2025-08-30T22:33:08,225 copying panCG/bin/__init__.py -> build/lib/panCG/bin 2025-08-30T22:33:08,227 copying panCG/bin/geneMapMerge.py -> build/lib/panCG/bin 2025-08-30T22:33:08,229 copying panCG/bin/CEs_identification.py -> build/lib/panCG/bin 2025-08-30T22:33:08,231 copying panCG/bin/paralogs.py -> build/lib/panCG/bin 2025-08-30T22:33:08,233 copying panCG/bin/cnsLineageSpeciSyn.py -> build/lib/panCG/bin 2025-08-30T22:33:08,235 copying panCG/bin/CE_RmCDS_to_CNS.py -> build/lib/panCG/bin 2025-08-30T22:33:08,237 copying panCG/bin/genePAV.py -> build/lib/panCG/bin 2025-08-30T22:33:08,239 copying panCG/bin/pangeneAssign.py -> build/lib/panCG/bin 2025-08-30T22:33:08,241 copying panCG/bin/geneClustering.py -> build/lib/panCG/bin 2025-08-30T22:33:08,243 copying panCG/bin/cnsMapMerge.py -> build/lib/panCG/bin 2025-08-30T22:33:08,246 copying panCG/bin/geneLineageSpeciSyn.py -> build/lib/panCG/bin 2025-08-30T22:33:08,248 copying panCG/bin/pancnsMerge.py -> build/lib/panCG/bin 2025-08-30T22:33:08,250 copying panCG/bin/callCNS.py -> build/lib/panCG/bin 2025-08-30T22:33:08,253 copying panCG/bin/pancnsAssign.py -> build/lib/panCG/bin 2025-08-30T22:33:08,254 copying panCG/bin/CnsGeneLink.py -> build/lib/panCG/bin 2025-08-30T22:33:08,257 copying panCG/bin/cnsRecall.py -> build/lib/panCG/bin 2025-08-30T22:33:08,259 copying panCG/bin/CnsSyntenyNet.py -> build/lib/panCG/bin 2025-08-30T22:33:08,261 copying panCG/bin/pancnsSort.py -> build/lib/panCG/bin 2025-08-30T22:33:08,263 creating build/lib/panCG/lib 2025-08-30T22:33:08,264 copying panCG/lib/cns_recall.py -> build/lib/panCG/lib 2025-08-30T22:33:08,267 copying panCG/lib/__init__.py -> build/lib/panCG/lib 2025-08-30T22:33:08,269 copying panCG/lib/base.py -> build/lib/panCG/lib 2025-08-30T22:33:08,271 copying panCG/lib/pancns.py -> build/lib/panCG/lib 2025-08-30T22:33:08,274 copying panCG/lib/PhySynNet.py -> build/lib/panCG/lib 2025-08-30T22:33:08,276 copying panCG/lib/CPM.py -> build/lib/panCG/lib 2025-08-30T22:33:08,279 copying panCG/lib/pancnsFilter.py -> build/lib/panCG/lib 2025-08-30T22:33:08,280 copying panCG/lib/sqliteDatabase.py -> build/lib/panCG/lib 2025-08-30T22:33:08,282 copying panCG/lib/indexAssign.py -> build/lib/panCG/lib 2025-08-30T22:33:08,285 copying panCG/lib/info.py -> build/lib/panCG/lib 2025-08-30T22:33:08,286 copying panCG/lib/pangeneIndex.py -> build/lib/panCG/lib 2025-08-30T22:33:08,289 copying panCG/lib/LineageSpecicSynteny.py -> build/lib/panCG/lib 2025-08-30T22:33:08,292 copying panCG/lib/CnsGeneLink.py -> build/lib/panCG/lib 2025-08-30T22:33:08,294 copying panCG/lib/CnsCall.py -> build/lib/panCG/lib 2025-08-30T22:33:08,299 running build_scripts 2025-08-30T22:33:08,300 creating build/scripts-3.11 2025-08-30T22:33:08,301 copying panCG/scripts/CNS.anno.R -> build/scripts-3.11 2025-08-30T22:33:08,303 changing mode of build/scripts-3.11/CNS.anno.R from 644 to 755 2025-08-30T22:33:08,329 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-08-30T22:33:08,330 !! 2025-08-30T22:33:08,331 ******************************************************************************** 2025-08-30T22:33:08,332 Please avoid running ``setup.py`` directly. 2025-08-30T22:33:08,333 Instead, use pypa/build, pypa/installer or other 2025-08-30T22:33:08,333 standards-based tools. 2025-08-30T22:33:08,334 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-08-30T22:33:08,335 or your builds will no longer be supported. 2025-08-30T22:33:08,336 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-08-30T22:33:08,337 ******************************************************************************** 2025-08-30T22:33:08,338 !! 2025-08-30T22:33:08,338 self.initialize_options() 2025-08-30T22:33:08,357 installing to build/bdist.linux-armv7l/wheel 2025-08-30T22:33:08,358 running install 2025-08-30T22:33:08,381 running install_lib 2025-08-30T22:33:08,408 creating build/bdist.linux-armv7l/wheel 2025-08-30T22:33:08,410 creating build/bdist.linux-armv7l/wheel/panCG 2025-08-30T22:33:08,411 copying build/lib/panCG/__init__.py -> build/bdist.linux-armv7l/wheel/./panCG 2025-08-30T22:33:08,413 creating build/bdist.linux-armv7l/wheel/panCG/bin 2025-08-30T22:33:08,414 copying build/lib/panCG/bin/cnsClustering.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,416 copying build/lib/panCG/bin/__init__.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,418 copying build/lib/panCG/bin/geneMapMerge.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,421 copying build/lib/panCG/bin/CEs_identification.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,423 copying build/lib/panCG/bin/paralogs.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,425 copying build/lib/panCG/bin/cnsLineageSpeciSyn.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,427 copying build/lib/panCG/bin/CE_RmCDS_to_CNS.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,429 copying build/lib/panCG/bin/genePAV.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,430 copying build/lib/panCG/bin/pangeneAssign.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,433 copying build/lib/panCG/bin/geneClustering.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,434 copying build/lib/panCG/bin/cnsMapMerge.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,437 copying build/lib/panCG/bin/geneLineageSpeciSyn.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,439 copying build/lib/panCG/bin/pancnsMerge.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,441 copying build/lib/panCG/bin/callCNS.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,444 copying build/lib/panCG/bin/pancnsAssign.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,446 copying build/lib/panCG/bin/CnsGeneLink.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,448 copying build/lib/panCG/bin/cnsRecall.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,450 copying build/lib/panCG/bin/CnsSyntenyNet.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,452 copying build/lib/panCG/bin/pancnsSort.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:33:08,455 creating build/bdist.linux-armv7l/wheel/panCG/lib 2025-08-30T22:33:08,456 copying build/lib/panCG/lib/cns_recall.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,458 copying build/lib/panCG/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,460 copying build/lib/panCG/lib/base.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,463 copying build/lib/panCG/lib/pancns.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,465 copying build/lib/panCG/lib/PhySynNet.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,468 copying build/lib/panCG/lib/CPM.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,470 copying build/lib/panCG/lib/pancnsFilter.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,472 copying build/lib/panCG/lib/sqliteDatabase.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,474 copying build/lib/panCG/lib/indexAssign.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,476 copying build/lib/panCG/lib/info.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,478 copying build/lib/panCG/lib/pangeneIndex.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,480 copying build/lib/panCG/lib/LineageSpecicSynteny.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,483 copying build/lib/panCG/lib/CnsGeneLink.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,485 copying build/lib/panCG/lib/CnsCall.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:33:08,487 copying build/lib/panCG/panCG.py -> build/bdist.linux-armv7l/wheel/./panCG 2025-08-30T22:33:08,489 running install_egg_info 2025-08-30T22:33:08,522 running egg_info 2025-08-30T22:33:08,548 writing panCG.egg-info/PKG-INFO 2025-08-30T22:33:08,553 writing dependency_links to panCG.egg-info/dependency_links.txt 2025-08-30T22:33:08,554 writing entry points to panCG.egg-info/entry_points.txt 2025-08-30T22:33:08,556 writing requirements to panCG.egg-info/requires.txt 2025-08-30T22:33:08,557 writing top-level names to panCG.egg-info/top_level.txt 2025-08-30T22:33:08,588 reading manifest file 'panCG.egg-info/SOURCES.txt' 2025-08-30T22:33:08,592 adding license file 'LICENSE' 2025-08-30T22:33:08,596 writing manifest file 'panCG.egg-info/SOURCES.txt' 2025-08-30T22:33:08,597 Copying panCG.egg-info to build/bdist.linux-armv7l/wheel/./panCG-0.0.4-py3.11.egg-info 2025-08-30T22:33:08,609 running install_scripts 2025-08-30T22:33:08,610 creating build/bdist.linux-armv7l/wheel/pancg-0.0.4.data/scripts 2025-08-30T22:33:08,611 copying build/scripts-3.11/CNS.anno.R -> build/bdist.linux-armv7l/wheel/pancg-0.0.4.data/scripts 2025-08-30T22:33:08,613 changing mode of build/bdist.linux-armv7l/wheel/pancg-0.0.4.data/scripts/CNS.anno.R to 755 2025-08-30T22:33:08,626 creating build/bdist.linux-armv7l/wheel/pancg-0.0.4.dist-info/WHEEL 2025-08-30T22:33:08,629 creating '/tmp/pip-wheel-h0ofix2s/pancg-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-08-30T22:33:08,631 adding 'panCG/__init__.py' 2025-08-30T22:33:08,634 adding 'panCG/panCG.py' 2025-08-30T22:33:08,636 adding 'panCG/bin/CE_RmCDS_to_CNS.py' 2025-08-30T22:33:08,638 adding 'panCG/bin/CEs_identification.py' 2025-08-30T22:33:08,639 adding 'panCG/bin/CnsGeneLink.py' 2025-08-30T22:33:08,641 adding 'panCG/bin/CnsSyntenyNet.py' 2025-08-30T22:33:08,642 adding 'panCG/bin/__init__.py' 2025-08-30T22:33:08,644 adding 'panCG/bin/callCNS.py' 2025-08-30T22:33:08,646 adding 'panCG/bin/cnsClustering.py' 2025-08-30T22:33:08,647 adding 'panCG/bin/cnsLineageSpeciSyn.py' 2025-08-30T22:33:08,649 adding 'panCG/bin/cnsMapMerge.py' 2025-08-30T22:33:08,651 adding 'panCG/bin/cnsRecall.py' 2025-08-30T22:33:08,653 adding 'panCG/bin/geneClustering.py' 2025-08-30T22:33:08,654 adding 'panCG/bin/geneLineageSpeciSyn.py' 2025-08-30T22:33:08,656 adding 'panCG/bin/geneMapMerge.py' 2025-08-30T22:33:08,657 adding 'panCG/bin/genePAV.py' 2025-08-30T22:33:08,659 adding 'panCG/bin/pancnsAssign.py' 2025-08-30T22:33:08,661 adding 'panCG/bin/pancnsMerge.py' 2025-08-30T22:33:08,662 adding 'panCG/bin/pancnsSort.py' 2025-08-30T22:33:08,664 adding 'panCG/bin/pangeneAssign.py' 2025-08-30T22:33:08,665 adding 'panCG/bin/paralogs.py' 2025-08-30T22:33:08,667 adding 'panCG/lib/CPM.py' 2025-08-30T22:33:08,669 adding 'panCG/lib/CnsCall.py' 2025-08-30T22:33:08,670 adding 'panCG/lib/CnsGeneLink.py' 2025-08-30T22:33:08,672 adding 'panCG/lib/LineageSpecicSynteny.py' 2025-08-30T22:33:08,674 adding 'panCG/lib/PhySynNet.py' 2025-08-30T22:33:08,675 adding 'panCG/lib/__init__.py' 2025-08-30T22:33:08,677 adding 'panCG/lib/base.py' 2025-08-30T22:33:08,679 adding 'panCG/lib/cns_recall.py' 2025-08-30T22:33:08,681 adding 'panCG/lib/indexAssign.py' 2025-08-30T22:33:08,682 adding 'panCG/lib/info.py' 2025-08-30T22:33:08,687 adding 'panCG/lib/pancns.py' 2025-08-30T22:33:08,688 adding 'panCG/lib/pancnsFilter.py' 2025-08-30T22:33:08,692 adding 'panCG/lib/pangeneIndex.py' 2025-08-30T22:33:08,693 adding 'panCG/lib/sqliteDatabase.py' 2025-08-30T22:33:08,695 adding 'pancg-0.0.4.data/scripts/CNS.anno.R' 2025-08-30T22:33:08,698 adding 'pancg-0.0.4.dist-info/licenses/LICENSE' 2025-08-30T22:33:08,699 adding 'pancg-0.0.4.dist-info/METADATA' 2025-08-30T22:33:08,701 adding 'pancg-0.0.4.dist-info/WHEEL' 2025-08-30T22:33:08,702 adding 'pancg-0.0.4.dist-info/entry_points.txt' 2025-08-30T22:33:08,703 adding 'pancg-0.0.4.dist-info/top_level.txt' 2025-08-30T22:33:08,704 adding 'pancg-0.0.4.dist-info/RECORD' 2025-08-30T22:33:08,707 removing build/bdist.linux-armv7l/wheel 2025-08-30T22:33:08,825 Building wheel for pancg (setup.py): finished with status 'done' 2025-08-30T22:33:08,828 Created wheel for pancg: filename=pancg-0.0.4-py3-none-any.whl size=84293 sha256=c645f1e4d6437a4edf04f491dbdd985ead20840eceed800b4ddcd67d69d1b961 2025-08-30T22:33:08,829 Stored in directory: /tmp/pip-ephem-wheel-cache-8v58ca5f/wheels/14/20/88/14cd2b3bce3b7078d23f356ec5869de4c8aa2bac5495bdc43e 2025-08-30T22:33:08,842 Successfully built pancg 2025-08-30T22:33:08,847 Removed build tracker: '/tmp/pip-build-tracker-2rex2rz7'