2025-08-31T03:14:01,678 Created temporary directory: /tmp/pip-build-tracker-wzlg57s2 2025-08-31T03:14:01,679 Initialized build tracking at /tmp/pip-build-tracker-wzlg57s2 2025-08-31T03:14:01,680 Created build tracker: /tmp/pip-build-tracker-wzlg57s2 2025-08-31T03:14:01,680 Entered build tracker: /tmp/pip-build-tracker-wzlg57s2 2025-08-31T03:14:01,681 Created temporary directory: /tmp/pip-wheel-vyptfw7s 2025-08-31T03:14:01,685 Created temporary directory: /tmp/pip-ephem-wheel-cache-fwo_r7i4 2025-08-31T03:14:01,750 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-08-31T03:14:01,753 2 location(s) to search for versions of indra: 2025-08-31T03:14:01,753 * https://pypi.org/simple/indra/ 2025-08-31T03:14:01,753 * https://www.piwheels.org/simple/indra/ 2025-08-31T03:14:01,754 Fetching project page and analyzing links: https://pypi.org/simple/indra/ 2025-08-31T03:14:01,756 Getting page https://pypi.org/simple/indra/ 2025-08-31T03:14:01,976 Found index url https://pypi.org/simple/ 2025-08-31T03:14:02,135 Fetched page https://pypi.org/simple/indra/ as application/vnd.pypi.simple.v1+json 2025-08-31T03:14:02,142 Found link https://files.pythonhosted.org/packages/9a/3a/5af9f8f46f67d2b2b14eb9d3f4a4b93bc37e7b053398c292830974edd2a5/indra-1.0.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.0.1 2025-08-31T03:14:02,143 Found link https://files.pythonhosted.org/packages/dc/4f/7bcc071070bf8ac5538a0ec51aeba95df70b5b465663bf34579d9fd450e1/indra-1.1.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.1.1 2025-08-31T03:14:02,144 Found link https://files.pythonhosted.org/packages/2e/55/cf1a5a947d62e54ede85d622480555b22d30854849dc9bc3ef500f2a9908/indra-1.2.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.2.0 2025-08-31T03:14:02,144 Found link https://files.pythonhosted.org/packages/63/52/a21e71a263232d841623680201b890f7398da0afb84bbfd038b6706df7dd/indra-1.3.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.3.0 2025-08-31T03:14:02,145 Found link https://files.pythonhosted.org/packages/f9/9a/a1c7b208fc4d2badda4a9c6b6ff2fb106659940827b9e542a7eaa9b33a0e/indra-1.4.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.4.0 2025-08-31T03:14:02,146 Found link https://files.pythonhosted.org/packages/62/6f/7d6e03d18bcfbb4891f0e2ca403c067c4213f206df04a39006ab84218ae0/indra-1.4.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.4.1 2025-08-31T03:14:02,147 Found link https://files.pythonhosted.org/packages/8d/c6/1713570f7e60341c8848425d98fdc8710901ec7ccf94ae1270c7a174dfa8/indra-1.4.2.tar.gz (from https://pypi.org/simple/indra/), version: 1.4.2 2025-08-31T03:14:02,147 Found link https://files.pythonhosted.org/packages/24/f9/a085a2abc00925e9de4c04fec672a311221a56aaa585df51991f59f65da3/indra-1.5.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.5.0 2025-08-31T03:14:02,148 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/16/f9/df804d21323c66835361c86502714649734273a715e90e27dbea3ef90509/indra-1.6.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,149 Found link https://files.pythonhosted.org/packages/f9/89/f2a345f8d8b6fcbda76dfc01645c24e959e45e701fc2b12f7b7adf50c7dd/indra-1.6.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.6.0 2025-08-31T03:14:02,150 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/f6/49/8b715af49116919b4508d6cbc19fe82d9f9360e123fb47ca8d1f20012f65/indra-1.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,150 Found link https://files.pythonhosted.org/packages/31/59/9c49fd4d0685108b70ede3e3221e1d088dde80c2aef5680b990599f31e36/indra-1.7.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.7.0 2025-08-31T03:14:02,151 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/98/76/03e13ae6f13a10e75308133bdcc543234a24da2cd1fac7e28c9bed420d65/indra-1.8.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,152 Found link https://files.pythonhosted.org/packages/35/5d/dc127fa7fc509552b877c578562f03fa83136f9facb27e6b39dcd4f64fe5/indra-1.8.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.8.0 2025-08-31T03:14:02,152 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/40/e0/b764069b070559a6f424dbf4a4d470e760eece7a152ba5bdb8154fcf046b/indra-1.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,153 Found link https://files.pythonhosted.org/packages/69/23/6218d10eaed8404a3fe46a62264145b6a7c5d67a5588faf689fe144cc820/indra-1.9.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.9.0 2025-08-31T03:14:02,154 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/16/32/b3a774b8a0b38a488e4f71747cbc9ebff2b6fa5652d4a525e212fb56342c/indra-1.10.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,155 Found link https://files.pythonhosted.org/packages/cb/51/b04ac15acb941b73936fa963fb4432ed4a2d212a8d7029cdaeb51238015b/indra-1.10.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.10.0 2025-08-31T03:14:02,155 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/00/c4/0a827fb29e03175382d12c499c6adc60534af8dd3732c35992ce16abe0c9/indra-1.11.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,156 Found link https://files.pythonhosted.org/packages/f0/3e/3042b24a895ef47152ac4622db6a451ee646970acefec3ddf1fd46935a07/indra-1.11.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.11.0 2025-08-31T03:14:02,156 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/64/51/c77d3b93ca90cd5697a1632a111d85eca82a880cf5171b070aa4bc0c6689/indra-1.12.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,157 Found link https://files.pythonhosted.org/packages/fb/bc/90de967323b8d132ee0feb20dfa5df1accb35d0387c780837302d3e81d05/indra-1.12.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.12.0 2025-08-31T03:14:02,157 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/e7/b7/110ece0643c233cf4e3dedc794fd5a37973e692dad29e5a255c531d13c34/indra-1.13.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,158 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/e8/64/944770797a1eaeb2f4bd97acb1f6a26e2bd34602ab6895b3cd7a28afbd1e/indra-1.13.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,159 Found link https://files.pythonhosted.org/packages/4a/6f/74df79e32c878bb0ea95d80e9ee6499f6a5826032e6307b53e672fb8c2c1/indra-1.13.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.13.0 2025-08-31T03:14:02,160 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/4f/54/109b56cd4baf682d1523104245e648151518a38a62c0d3034a2a49335809/indra-1.14.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,160 Found link https://files.pythonhosted.org/packages/c1/79/eddc0f7d9ca9756964cd0c76f47ce02efbc17413c62787987e9ea8f6002e/indra-1.14.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.14.0 2025-08-31T03:14:02,161 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/ad/ad/36d2fa5fdd4998ee595e6d2c387d973dbfb6e9be7420c7f634df0fbf1237/indra-1.14.1-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,162 Found link https://files.pythonhosted.org/packages/8e/02/be7d6cb0e0a5b7a5f5b538c78e6c908d4df7310f035c47749ae68decf8b2/indra-1.14.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.14.1 2025-08-31T03:14:02,162 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/80/39/5942a649bf41d30241529a0889f67e7f75e32c7ac139d199cc3d76bd0ec3/indra-1.15.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,163 Found link https://files.pythonhosted.org/packages/1f/60/bf1a9d72aa8b8ad68af1175b49c0a3f55184398c125ea068bc1903ad6bd6/indra-1.15.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.15.0 2025-08-31T03:14:02,164 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/ec/20/be8d777ab90221d670c1b221a813b772fe6bae7716bc39ba7d4d4f647db2/indra-1.15.1-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,165 Found link https://files.pythonhosted.org/packages/fb/58/3e5bbab6cf447422a207f2b48502e191ffbc1ba642a606fe052bf530c54f/indra-1.15.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.15.1 2025-08-31T03:14:02,165 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/b6/2b/3b6a9ee41666ef79c25751c85ad3e948dde2ec1169ca30bbeef7cf6f834f/indra-1.15.2-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,166 Found link https://files.pythonhosted.org/packages/a5/00/1d32762c9fc453039fced117e1dfe83a245f7c44c4303263b5429a345b89/indra-1.15.2.tar.gz (from https://pypi.org/simple/indra/), version: 1.15.2 2025-08-31T03:14:02,166 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/72/0f/6aec7c7cfbf336647ad965c75b4bd9ca2daef22256a5b92d02cb9f1c7958/indra-1.16.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,167 Found link https://files.pythonhosted.org/packages/d7/ee/56281c837ee468f63d493bda7e028dadd3f1f8228461dcaabbb3358166d4/indra-1.16.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.16.0 2025-08-31T03:14:02,167 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/48/60/acb9333580d4b9be64e74c68639ba8c2715712c077871172dd9ac85bdc47/indra-1.17.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,168 Found link https://files.pythonhosted.org/packages/72/7d/b8683f17a613aa915af3a52f88c1e6619988d3f26b22693c8c1783b75076/indra-1.17.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.17.0 2025-08-31T03:14:02,168 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/2c/14/596d0c7398b66e98856195ee9ea926dce516a8dcf4b9f2ccb484705980d7/indra-1.18.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,169 Found link https://files.pythonhosted.org/packages/c8/c2/d4ac2c7dd22075aa7555f57b488ee3e7aec79231ec0ce158ca7a12477dee/indra-1.18.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.18.0 2025-08-31T03:14:02,170 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/d2/cc/cb805a5cb8ff1daecf116d251ceb34e230ec9473959c2f6a8e1db1e714e4/indra-1.19.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,170 Found link https://files.pythonhosted.org/packages/0a/a8/12048d4bf6326acaa7ae9436ced7aaec994d6b849f9b788328aa492e335c/indra-1.19.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.19.0 2025-08-31T03:14:02,171 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/55/d3/b197668130bfd558cd9544efb60aadfaa0f858059c89812541a83ff68c0e/indra-1.20.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,172 Found link https://files.pythonhosted.org/packages/12/76/5e396f1f300ac19d6800f5c2afbdc0f277e9d4f94387cead0bac11257593/indra-1.20.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.20.0 2025-08-31T03:14:02,173 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/d5/c9/fe66550f7d6325659e8f7779d49398d0752caa28db798e723f61b4d0f6e5/indra-1.21.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,173 Found link https://files.pythonhosted.org/packages/4f/73/49d043eaf0a6aa775565c0aba119869ffe0c37543b02068848284aa89f8c/indra-1.21.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.21.0 2025-08-31T03:14:02,174 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/b7/e0/80a88b67dbd63c4a929c186ca917fb7d94d2aae59ed0122a5d91f92a4354/indra-1.22.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,175 Found link https://files.pythonhosted.org/packages/5c/6e/76199902ab956cf5253d2f826a3597e6e1533803f7f9ba6317307c1eb98e/indra-1.22.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.22.0 2025-08-31T03:14:02,175 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/50/af/c871e06df92a201b1ff7b6b5eb3a6ef6a8218c2340ec81d3e9ec5b10c438/indra-1.23.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,176 Found link https://files.pythonhosted.org/packages/f0/78/7b0ee979d80496c23d88014b81d4bac15b53ca4be7e131219a17233fb58b/indra-1.23.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.23.0 2025-08-31T03:14:02,177 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/40/c2/2fb258a41581a1282485882a4e7def0aa2e1026df6b9f925fcf70479edc0/indra-1.24.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2025-08-31T03:14:02,178 Found link https://files.pythonhosted.org/packages/40/63/942dc5345c43270c11a2d71fb5e451516ddd26d39387badaca8d9c1d784e/indra-1.24.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.24.0 2025-08-31T03:14:02,178 Fetching project page and analyzing links: https://www.piwheels.org/simple/indra/ 2025-08-31T03:14:02,179 Getting page https://www.piwheels.org/simple/indra/ 2025-08-31T03:14:02,180 Found index url https://www.piwheels.org/simple/ 2025-08-31T03:14:02,362 Fetched page https://www.piwheels.org/simple/indra/ as text/html 2025-08-31T03:14:02,368 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.23.0-py3-none-any.whl#sha256=566a2bf23d0345015b4a4c3356f83873c8aeb0d90a921446eb513bace0f86d0a (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,369 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.22.0-py3-none-any.whl#sha256=d07f91f10aeb50c6baeb98f02c5e2f0a47fd1c54bcd7332b0dcfdfe1995cd5ac (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,370 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.21.0-py3-none-any.whl#sha256=31c1c672a67f76a11da9f4fad6a3dbb85f3453a0506343dc577f538c987c1217 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,370 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.20.0-py3-none-any.whl#sha256=da605cc995dbe85c8df6f606af7bad19ac8d52a265c47c1a17c8d5699eb928d1 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,371 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.19.0-py3-none-any.whl#sha256=fff9c75b911e940412d23f4f37d9dcc0cd35fc6e68cf5bb1d84af0f4434e75f4 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,371 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.18.0-py3-none-any.whl#sha256=9bfa5f15c08c6965c29ffa41887e931267414fd3fb5af67da865ea24ee7f9e68 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,372 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.17.0-py3-none-any.whl#sha256=9d883aaabd8c698990305070ae64fb8de79119601b01c8222b736ef94d620217 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,373 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.16.0-py3-none-any.whl#sha256=f5efdd4fb3a890ac30e99219202e179cf54ef4d8f2bec430454d4bcc31a53f49 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,373 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.15.2-py3-none-any.whl#sha256=a887da49fae423714d62cda5a3a4b1fac008a37b0336b55639d85624e6924e2c (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,374 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.15.1-py3-none-any.whl#sha256=e5b6ac76c39aadf4c3ce7d6168f6339478f707817468c49a18b7981bfc6a6241 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,375 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.15.0-py3-none-any.whl#sha256=0819083e25abe18183efba7679b66b12c95246d2a69dbf3459f183eafe33554a (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,375 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.14.1-py3-none-any.whl#sha256=d173e741545d19a0b8db4d9e39786bd6a3fcdf9f385e2ef9d0a53ef08b300765 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,376 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.14.0-py3-none-any.whl#sha256=37b11f3ccb77fa3bccdabc9e6387b300afd10f2a8c1c37a89870cbfa30d204e5 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,376 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.13.0-py2.py3-none-any.whl#sha256=b525fdcc97f0b91af44ae1c1769d3e2117a9b1ab5cf4186cb9f092b89f0e2907 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,377 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.12.0-py2.py3-none-any.whl#sha256=e1342184f4b2386c67e3198436c205c3b1cb870dea0f0662dfc411a3caebc065 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,377 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.11.0-py2.py3-none-any.whl#sha256=9d09e98573b1d38993a1064bd1deede4a62c3f5b557472220140d3afb7c57847 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,378 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.10.0-py2.py3-none-any.whl#sha256=2b2df33ef096b4841c9f2a8ed96e0d7d97e757798437351885f6d0d6c06f4fa3 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,379 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.9.0-py2.py3-none-any.whl#sha256=e5a9a0050d69147770407974843d364b820b50d264b54edd9c02f4cd149288b3 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,379 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.8.0-py2.py3-none-any.whl#sha256=61c2e937686aff9efb5ebd5f16e42bbd3350afd4ace8eb9be0e68d6ae359bf67 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,380 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.7.0-py2.py3-none-any.whl#sha256=ec4704a5233741430b5bf0bc97a71bbffa54b715f266e4f20591722f7226876b (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,381 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.6.0-py3-none-any.whl#sha256=1f2d5ff71b163b08234fb90cabad0dd61e26ddf258470b2608dd4fc488145d7a (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,381 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.5.0-py3-none-any.whl#sha256=0f0fb94a770e019e21b6a2bf5b192e6a390ad3604c83a09acef2f11cc7700c23 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,382 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.4.2-py3-none-any.whl#sha256=d41af4cda9a7efd79edda9a36e9f8d52da4bbad1394f1efa4a67739c87ab0a73 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,383 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.4.1-py3-none-any.whl#sha256=4fea4c7b5fb1db897f501aac183e1333507f7781193f12556af7a17070d3b684 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,383 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.4.0-py3-none-any.whl#sha256=a5bfe715c95ebac1ee3aacc66d263aba742074363a47932b8969eb23a3dd7d0d (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,384 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.3.0-py3-none-any.whl#sha256=cab713ec8209f1df543212c36ce35558dc48370b1025db9078934708284fe1e8 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,385 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.2.0-py3-none-any.whl#sha256=96c795e8d047fa5f0d1f4cb1c1e030562c4bb45cd9ca22d73a0f28c53e15d04d (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,386 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.1.1-py3-none-any.whl#sha256=d301a4886aa24f672045e58091fd658bba14f5dd84a4e34cb735ca7bffa30420 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,386 Skipping link: No binaries permitted for indra: https://archive1.piwheels.org/simple/indra/indra-1.0.1-py3-none-any.whl#sha256=0e80ea14d00810503443dc94faeb1537cd1a4faf9bc0abf6d469d62623ff4ea8 (from https://www.piwheels.org/simple/indra/) 2025-08-31T03:14:02,387 Skipping link: not a file: https://www.piwheels.org/simple/indra/ 2025-08-31T03:14:02,387 Skipping link: not a file: https://pypi.org/simple/indra/ 2025-08-31T03:14:02,413 Given no hashes to check 1 links for project 'indra': discarding no candidates 2025-08-31T03:14:02,415 Collecting indra==1.24.0 2025-08-31T03:14:02,417 Created temporary directory: /tmp/pip-unpack-om8h1beu 2025-08-31T03:14:02,740 Downloading indra-1.24.0.tar.gz (46.3 MB) 2025-08-31T03:14:17,974 Added indra==1.24.0 from https://files.pythonhosted.org/packages/40/63/942dc5345c43270c11a2d71fb5e451516ddd26d39387badaca8d9c1d784e/indra-1.24.0.tar.gz to build tracker '/tmp/pip-build-tracker-wzlg57s2' 2025-08-31T03:14:17,977 Running setup.py (path:/tmp/pip-wheel-vyptfw7s/indra_c44b111ba37848d588a26d9ed78d1555/setup.py) egg_info for package indra 2025-08-31T03:14:17,978 Created temporary directory: /tmp/pip-pip-egg-info-tnpc8zxn 2025-08-31T03:14:17,979 Preparing metadata (setup.py): started 2025-08-31T03:14:17,980 Running command python setup.py egg_info 2025-08-31T03:14:18,975 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-31T03:14:18,975 !! 2025-08-31T03:14:18,976 ******************************************************************************** 2025-08-31T03:14:18,977 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-31T03:14:18,978 License :: OSI Approved :: BSD License 2025-08-31T03:14:18,980 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-31T03:14:18,980 ******************************************************************************** 2025-08-31T03:14:18,981 !! 2025-08-31T03:14:18,982 self._finalize_license_expression() 2025-08-31T03:14:19,007 running egg_info 2025-08-31T03:14:19,035 creating /tmp/pip-pip-egg-info-tnpc8zxn/indra.egg-info 2025-08-31T03:14:19,037 writing /tmp/pip-pip-egg-info-tnpc8zxn/indra.egg-info/PKG-INFO 2025-08-31T03:14:19,063 writing dependency_links to /tmp/pip-pip-egg-info-tnpc8zxn/indra.egg-info/dependency_links.txt 2025-08-31T03:14:19,065 writing entry points to /tmp/pip-pip-egg-info-tnpc8zxn/indra.egg-info/entry_points.txt 2025-08-31T03:14:19,079 writing requirements to /tmp/pip-pip-egg-info-tnpc8zxn/indra.egg-info/requires.txt 2025-08-31T03:14:19,080 writing top-level names to /tmp/pip-pip-egg-info-tnpc8zxn/indra.egg-info/top_level.txt 2025-08-31T03:14:19,082 writing manifest file '/tmp/pip-pip-egg-info-tnpc8zxn/indra.egg-info/SOURCES.txt' 2025-08-31T03:14:19,296 reading manifest file '/tmp/pip-pip-egg-info-tnpc8zxn/indra.egg-info/SOURCES.txt' 2025-08-31T03:14:19,298 reading manifest template 'MANIFEST.in' 2025-08-31T03:14:19,480 warning: no files found matching 'indra/tools/reading/util/reach_conf_fmt.txt' 2025-08-31T03:14:19,480 warning: no files found matching 'indra/assemblers/cag/cag_style.json' 2025-08-31T03:14:19,481 warning: no files found matching 'indra/assemblers/cag/cag_template.js' 2025-08-31T03:14:19,483 adding license file 'LICENSE' 2025-08-31T03:14:19,504 writing manifest file '/tmp/pip-pip-egg-info-tnpc8zxn/indra.egg-info/SOURCES.txt' 2025-08-31T03:14:19,614 Preparing metadata (setup.py): finished with status 'done' 2025-08-31T03:14:19,619 Source in /tmp/pip-wheel-vyptfw7s/indra_c44b111ba37848d588a26d9ed78d1555 has version 1.24.0, which satisfies requirement indra==1.24.0 from https://files.pythonhosted.org/packages/40/63/942dc5345c43270c11a2d71fb5e451516ddd26d39387badaca8d9c1d784e/indra-1.24.0.tar.gz 2025-08-31T03:14:19,620 Removed indra==1.24.0 from https://files.pythonhosted.org/packages/40/63/942dc5345c43270c11a2d71fb5e451516ddd26d39387badaca8d9c1d784e/indra-1.24.0.tar.gz from build tracker '/tmp/pip-build-tracker-wzlg57s2' 2025-08-31T03:14:19,696 Created temporary directory: /tmp/pip-unpack-m6rtonzp 2025-08-31T03:14:19,697 Created temporary directory: /tmp/pip-unpack-5u9753m_ 2025-08-31T03:14:19,698 Building wheels for collected packages: indra 2025-08-31T03:14:19,701 Created temporary directory: /tmp/pip-wheel-ymhvy0fr 2025-08-31T03:14:19,702 DEPRECATION: Building 'indra' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'indra'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-08-31T03:14:19,703 Building wheel for indra (setup.py): started 2025-08-31T03:14:19,704 Destination directory: /tmp/pip-wheel-ymhvy0fr 2025-08-31T03:14:19,705 Running command python setup.py bdist_wheel 2025-08-31T03:14:20,571 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-31T03:14:20,572 !! 2025-08-31T03:14:20,573 ******************************************************************************** 2025-08-31T03:14:20,574 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-31T03:14:20,575 License :: OSI Approved :: BSD License 2025-08-31T03:14:20,576 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-31T03:14:20,577 ******************************************************************************** 2025-08-31T03:14:20,579 !! 2025-08-31T03:14:20,580 self._finalize_license_expression() 2025-08-31T03:14:20,581 running bdist_wheel 2025-08-31T03:14:20,732 running build 2025-08-31T03:14:20,733 running build_py 2025-08-31T03:14:20,766 creating build/lib/indra 2025-08-31T03:14:20,769 copying indra/__init__.py -> build/lib/indra 2025-08-31T03:14:20,771 copying indra/config.py -> build/lib/indra 2025-08-31T03:14:20,774 copying indra/java_vm.py -> build/lib/indra 2025-08-31T03:14:20,777 creating build/lib/indra/assemblers 2025-08-31T03:14:20,778 copying indra/assemblers/__init__.py -> build/lib/indra/assemblers 2025-08-31T03:14:20,781 creating build/lib/indra/assemblers/cx 2025-08-31T03:14:20,782 copying indra/assemblers/cx/__init__.py -> build/lib/indra/assemblers/cx 2025-08-31T03:14:20,785 copying indra/assemblers/cx/hub_layout.py -> build/lib/indra/assemblers/cx 2025-08-31T03:14:20,788 copying indra/assemblers/cx/assembler.py -> build/lib/indra/assemblers/cx 2025-08-31T03:14:20,792 creating build/lib/indra/assemblers/cyjs 2025-08-31T03:14:20,793 copying indra/assemblers/cyjs/__init__.py -> build/lib/indra/assemblers/cyjs 2025-08-31T03:14:20,796 copying indra/assemblers/cyjs/assembler.py -> build/lib/indra/assemblers/cyjs 2025-08-31T03:14:20,799 creating build/lib/indra/assemblers/english 2025-08-31T03:14:20,801 copying indra/assemblers/english/__init__.py -> build/lib/indra/assemblers/english 2025-08-31T03:14:20,804 copying indra/assemblers/english/assembler.py -> build/lib/indra/assemblers/english 2025-08-31T03:14:20,808 creating build/lib/indra/assemblers/graph 2025-08-31T03:14:20,809 copying indra/assemblers/graph/__init__.py -> build/lib/indra/assemblers/graph 2025-08-31T03:14:20,812 copying indra/assemblers/graph/assembler.py -> build/lib/indra/assemblers/graph 2025-08-31T03:14:20,815 creating build/lib/indra/assemblers/html 2025-08-31T03:14:20,817 copying indra/assemblers/html/__init__.py -> build/lib/indra/assemblers/html 2025-08-31T03:14:20,819 copying indra/assemblers/html/assembler.py -> build/lib/indra/assemblers/html 2025-08-31T03:14:20,823 creating build/lib/indra/assemblers/index_card 2025-08-31T03:14:20,824 copying indra/assemblers/index_card/__init__.py -> build/lib/indra/assemblers/index_card 2025-08-31T03:14:20,827 copying indra/assemblers/index_card/assembler.py -> build/lib/indra/assemblers/index_card 2025-08-31T03:14:20,830 creating build/lib/indra/assemblers/indranet 2025-08-31T03:14:20,832 copying indra/assemblers/indranet/__init__.py -> build/lib/indra/assemblers/indranet 2025-08-31T03:14:20,834 copying indra/assemblers/indranet/assembler.py -> build/lib/indra/assemblers/indranet 2025-08-31T03:14:20,839 copying indra/assemblers/indranet/net.py -> build/lib/indra/assemblers/indranet 2025-08-31T03:14:20,843 creating build/lib/indra/assemblers/kami 2025-08-31T03:14:20,844 copying indra/assemblers/kami/__init__.py -> build/lib/indra/assemblers/kami 2025-08-31T03:14:20,847 copying indra/assemblers/kami/assembler.py -> build/lib/indra/assemblers/kami 2025-08-31T03:14:20,850 creating build/lib/indra/assemblers/pybel 2025-08-31T03:14:20,851 copying indra/assemblers/pybel/__init__.py -> build/lib/indra/assemblers/pybel 2025-08-31T03:14:20,853 copying indra/assemblers/pybel/assembler.py -> build/lib/indra/assemblers/pybel 2025-08-31T03:14:20,857 creating build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,858 copying indra/assemblers/pysb/bmi_wrapper.py -> build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,861 copying indra/assemblers/pysb/export.py -> build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,863 copying indra/assemblers/pysb/__init__.py -> build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,865 copying indra/assemblers/pysb/sites.py -> build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,867 copying indra/assemblers/pysb/preassembler.py -> build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,870 copying indra/assemblers/pysb/assembler.py -> build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,875 copying indra/assemblers/pysb/kappa_util.py -> build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,877 copying indra/assemblers/pysb/common.py -> build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,879 copying indra/assemblers/pysb/base_agents.py -> build/lib/indra/assemblers/pysb 2025-08-31T03:14:20,883 creating build/lib/indra/assemblers/sbgn 2025-08-31T03:14:20,884 copying indra/assemblers/sbgn/__init__.py -> build/lib/indra/assemblers/sbgn 2025-08-31T03:14:20,886 copying indra/assemblers/sbgn/assembler.py -> build/lib/indra/assemblers/sbgn 2025-08-31T03:14:20,889 creating build/lib/indra/assemblers/sif 2025-08-31T03:14:20,890 copying indra/assemblers/sif/__init__.py -> build/lib/indra/assemblers/sif 2025-08-31T03:14:20,892 copying indra/assemblers/sif/assembler.py -> build/lib/indra/assemblers/sif 2025-08-31T03:14:20,895 creating build/lib/indra/assemblers/tsv 2025-08-31T03:14:20,896 copying indra/assemblers/tsv/__init__.py -> build/lib/indra/assemblers/tsv 2025-08-31T03:14:20,898 copying indra/assemblers/tsv/assembler.py -> build/lib/indra/assemblers/tsv 2025-08-31T03:14:20,901 creating build/lib/indra/belief 2025-08-31T03:14:20,902 copying indra/belief/skl.py -> build/lib/indra/belief 2025-08-31T03:14:20,906 copying indra/belief/__init__.py -> build/lib/indra/belief 2025-08-31T03:14:20,909 creating build/lib/indra/benchmarks 2025-08-31T03:14:20,911 copying indra/benchmarks/benchmark_db_coverage.py -> build/lib/indra/benchmarks 2025-08-31T03:14:20,913 copying indra/benchmarks/benchmark_trips.py -> build/lib/indra/benchmarks 2025-08-31T03:14:20,916 copying indra/benchmarks/__init__.py -> build/lib/indra/benchmarks 2025-08-31T03:14:20,919 creating build/lib/indra/databases 2025-08-31T03:14:20,920 copying indra/databases/lincs_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,922 copying indra/databases/mgi_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,924 copying indra/databases/mirbase_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,926 copying indra/databases/mesh_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,929 copying indra/databases/pubchem_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,930 copying indra/databases/mondo_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,932 copying indra/databases/ec_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,934 copying indra/databases/ido_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,936 copying indra/databases/rgd_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,938 copying indra/databases/__init__.py -> build/lib/indra/databases 2025-08-31T03:14:20,940 copying indra/databases/go_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,942 copying indra/databases/taxonomy_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,944 copying indra/databases/owl_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,946 copying indra/databases/doid_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,948 copying indra/databases/biolookup_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,950 copying indra/databases/chembl_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,952 copying indra/databases/bioregistry_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,955 copying indra/databases/obo_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,957 copying indra/databases/chebi_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,960 copying indra/databases/ndex_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,962 copying indra/databases/context_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,965 copying indra/databases/efo_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,966 copying indra/databases/hp_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,968 copying indra/databases/identifiers.py -> build/lib/indra/databases 2025-08-31T03:14:20,971 copying indra/databases/uniprot_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,973 copying indra/databases/drugbank_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,975 copying indra/databases/hgnc_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,978 copying indra/databases/cbio_client.py -> build/lib/indra/databases 2025-08-31T03:14:20,981 creating build/lib/indra/explanation 2025-08-31T03:14:20,982 copying indra/explanation/reporting.py -> build/lib/indra/explanation 2025-08-31T03:14:20,985 copying indra/explanation/__init__.py -> build/lib/indra/explanation 2025-08-31T03:14:20,987 creating build/lib/indra/explanation/model_checker 2025-08-31T03:14:20,988 copying indra/explanation/model_checker/__init__.py -> build/lib/indra/explanation/model_checker 2025-08-31T03:14:20,990 copying indra/explanation/model_checker/signed_graph.py -> build/lib/indra/explanation/model_checker 2025-08-31T03:14:20,992 copying indra/explanation/model_checker/model_checker.py -> build/lib/indra/explanation/model_checker 2025-08-31T03:14:20,995 copying indra/explanation/model_checker/unsigned_graph.py -> build/lib/indra/explanation/model_checker 2025-08-31T03:14:20,998 copying indra/explanation/model_checker/pybel.py -> build/lib/indra/explanation/model_checker 2025-08-31T03:14:21,001 copying indra/explanation/model_checker/pysb.py -> build/lib/indra/explanation/model_checker 2025-08-31T03:14:21,004 creating build/lib/indra/explanation/pathfinding 2025-08-31T03:14:21,006 copying indra/explanation/pathfinding/util.py -> build/lib/indra/explanation/pathfinding 2025-08-31T03:14:21,008 copying indra/explanation/pathfinding/__init__.py -> build/lib/indra/explanation/pathfinding 2025-08-31T03:14:21,010 copying indra/explanation/pathfinding/pathfinding.py -> build/lib/indra/explanation/pathfinding 2025-08-31T03:14:21,014 creating build/lib/indra/literature 2025-08-31T03:14:21,015 copying indra/literature/pubmed_client.py -> build/lib/indra/literature 2025-08-31T03:14:21,019 copying indra/literature/coci_client.py -> build/lib/indra/literature 2025-08-31T03:14:21,021 copying indra/literature/newsapi_client.py -> build/lib/indra/literature 2025-08-31T03:14:21,023 copying indra/literature/crossref_client.py -> build/lib/indra/literature 2025-08-31T03:14:21,025 copying indra/literature/s3_client.py -> build/lib/indra/literature 2025-08-31T03:14:21,028 copying indra/literature/__init__.py -> build/lib/indra/literature 2025-08-31T03:14:21,030 copying indra/literature/biorxiv_client.py -> build/lib/indra/literature 2025-08-31T03:14:21,032 copying indra/literature/elsevier_client.py -> build/lib/indra/literature 2025-08-31T03:14:21,035 copying indra/literature/pmc_client.py -> build/lib/indra/literature 2025-08-31T03:14:21,038 copying indra/literature/adeft_tools.py -> build/lib/indra/literature 2025-08-31T03:14:21,041 creating build/lib/indra/mechlinker 2025-08-31T03:14:21,042 copying indra/mechlinker/__init__.py -> build/lib/indra/mechlinker 2025-08-31T03:14:21,046 creating build/lib/indra/ontology 2025-08-31T03:14:21,048 copying indra/ontology/__init__.py -> build/lib/indra/ontology 2025-08-31T03:14:21,050 copying indra/ontology/standardize.py -> build/lib/indra/ontology 2025-08-31T03:14:21,052 copying indra/ontology/ontology_graph.py -> build/lib/indra/ontology 2025-08-31T03:14:21,055 creating build/lib/indra/ontology/bio 2025-08-31T03:14:21,056 copying indra/ontology/bio/__init__.py -> build/lib/indra/ontology/bio 2025-08-31T03:14:21,058 copying indra/ontology/bio/__main__.py -> build/lib/indra/ontology/bio 2025-08-31T03:14:21,060 copying indra/ontology/bio/ontology.py -> build/lib/indra/ontology/bio 2025-08-31T03:14:21,063 copying indra/ontology/bio/sqlite_ontology.py -> build/lib/indra/ontology/bio 2025-08-31T03:14:21,066 creating build/lib/indra/ontology/virtual 2025-08-31T03:14:21,067 copying indra/ontology/virtual/__init__.py -> build/lib/indra/ontology/virtual 2025-08-31T03:14:21,070 copying indra/ontology/virtual/ontology.py -> build/lib/indra/ontology/virtual 2025-08-31T03:14:21,072 creating build/lib/indra/ontology/app 2025-08-31T03:14:21,073 copying indra/ontology/app/__init__.py -> build/lib/indra/ontology/app 2025-08-31T03:14:21,075 copying indra/ontology/app/app.py -> build/lib/indra/ontology/app 2025-08-31T03:14:21,078 creating build/lib/indra/pipeline 2025-08-31T03:14:21,079 copying indra/pipeline/decorators.py -> build/lib/indra/pipeline 2025-08-31T03:14:21,081 copying indra/pipeline/pipeline.py -> build/lib/indra/pipeline 2025-08-31T03:14:21,084 copying indra/pipeline/__init__.py -> build/lib/indra/pipeline 2025-08-31T03:14:21,087 creating build/lib/indra/preassembler 2025-08-31T03:14:21,089 copying indra/preassembler/__init__.py -> build/lib/indra/preassembler 2025-08-31T03:14:21,092 copying indra/preassembler/refinement.py -> build/lib/indra/preassembler 2025-08-31T03:14:21,095 copying indra/preassembler/sitemapper.py -> build/lib/indra/preassembler 2025-08-31T03:14:21,098 copying indra/preassembler/custom_preassembly.py -> build/lib/indra/preassembler 2025-08-31T03:14:21,100 creating build/lib/indra/preassembler/grounding_mapper 2025-08-31T03:14:21,101 copying indra/preassembler/grounding_mapper/mapper.py -> build/lib/indra/preassembler/grounding_mapper 2025-08-31T03:14:21,104 copying indra/preassembler/grounding_mapper/gilda.py -> build/lib/indra/preassembler/grounding_mapper 2025-08-31T03:14:21,107 copying indra/preassembler/grounding_mapper/__init__.py -> build/lib/indra/preassembler/grounding_mapper 2025-08-31T03:14:21,109 copying indra/preassembler/grounding_mapper/analysis.py -> build/lib/indra/preassembler/grounding_mapper 2025-08-31T03:14:21,111 copying indra/preassembler/grounding_mapper/disambiguate.py -> build/lib/indra/preassembler/grounding_mapper 2025-08-31T03:14:21,114 creating build/lib/indra/sources 2025-08-31T03:14:21,115 copying indra/sources/utils.py -> build/lib/indra/sources 2025-08-31T03:14:21,118 copying indra/sources/__init__.py -> build/lib/indra/sources 2025-08-31T03:14:21,120 copying indra/sources/biogrid.py -> build/lib/indra/sources 2025-08-31T03:14:21,122 creating build/lib/indra/sources/acsn 2025-08-31T03:14:21,124 copying indra/sources/acsn/api.py -> build/lib/indra/sources/acsn 2025-08-31T03:14:21,126 copying indra/sources/acsn/processor.py -> build/lib/indra/sources/acsn 2025-08-31T03:14:21,128 copying indra/sources/acsn/__init__.py -> build/lib/indra/sources/acsn 2025-08-31T03:14:21,130 creating build/lib/indra/sources/bel 2025-08-31T03:14:21,131 copying indra/sources/bel/api.py -> build/lib/indra/sources/bel 2025-08-31T03:14:21,134 copying indra/sources/bel/processor.py -> build/lib/indra/sources/bel 2025-08-31T03:14:21,137 copying indra/sources/bel/__init__.py -> build/lib/indra/sources/bel 2025-08-31T03:14:21,140 creating build/lib/indra/sources/biofactoid 2025-08-31T03:14:21,141 copying indra/sources/biofactoid/api.py -> build/lib/indra/sources/biofactoid 2025-08-31T03:14:21,143 copying indra/sources/biofactoid/processor.py -> build/lib/indra/sources/biofactoid 2025-08-31T03:14:21,145 copying indra/sources/biofactoid/__init__.py -> build/lib/indra/sources/biofactoid 2025-08-31T03:14:21,148 creating build/lib/indra/sources/biopax 2025-08-31T03:14:21,149 copying indra/sources/biopax/api.py -> build/lib/indra/sources/biopax 2025-08-31T03:14:21,152 copying indra/sources/biopax/processor.py -> build/lib/indra/sources/biopax 2025-08-31T03:14:21,155 copying indra/sources/biopax/__init__.py -> build/lib/indra/sources/biopax 2025-08-31T03:14:21,157 creating build/lib/indra/sources/creeds 2025-08-31T03:14:21,158 copying indra/sources/creeds/api.py -> build/lib/indra/sources/creeds 2025-08-31T03:14:21,160 copying indra/sources/creeds/processor.py -> build/lib/indra/sources/creeds 2025-08-31T03:14:21,163 copying indra/sources/creeds/__init__.py -> build/lib/indra/sources/creeds 2025-08-31T03:14:21,166 creating build/lib/indra/sources/crog 2025-08-31T03:14:21,167 copying indra/sources/crog/api.py -> build/lib/indra/sources/crog 2025-08-31T03:14:21,169 copying indra/sources/crog/processor.py -> build/lib/indra/sources/crog 2025-08-31T03:14:21,171 copying indra/sources/crog/__init__.py -> build/lib/indra/sources/crog 2025-08-31T03:14:21,173 copying indra/sources/crog/__main__.py -> build/lib/indra/sources/crog 2025-08-31T03:14:21,175 creating build/lib/indra/sources/ctd 2025-08-31T03:14:21,177 copying indra/sources/ctd/api.py -> build/lib/indra/sources/ctd 2025-08-31T03:14:21,179 copying indra/sources/ctd/processor.py -> build/lib/indra/sources/ctd 2025-08-31T03:14:21,181 copying indra/sources/ctd/__init__.py -> build/lib/indra/sources/ctd 2025-08-31T03:14:21,184 creating build/lib/indra/sources/dgi 2025-08-31T03:14:21,185 copying indra/sources/dgi/api.py -> build/lib/indra/sources/dgi 2025-08-31T03:14:21,187 copying indra/sources/dgi/processor.py -> build/lib/indra/sources/dgi 2025-08-31T03:14:21,190 copying indra/sources/dgi/__init__.py -> build/lib/indra/sources/dgi 2025-08-31T03:14:21,191 copying indra/sources/dgi/__main__.py -> build/lib/indra/sources/dgi 2025-08-31T03:14:21,194 creating build/lib/indra/sources/drugbank 2025-08-31T03:14:21,195 copying indra/sources/drugbank/api.py -> build/lib/indra/sources/drugbank 2025-08-31T03:14:21,197 copying indra/sources/drugbank/processor.py -> build/lib/indra/sources/drugbank 2025-08-31T03:14:21,200 copying indra/sources/drugbank/__init__.py -> build/lib/indra/sources/drugbank 2025-08-31T03:14:21,202 creating build/lib/indra/sources/eidos 2025-08-31T03:14:21,203 copying indra/sources/eidos/client.py -> build/lib/indra/sources/eidos 2025-08-31T03:14:21,206 copying indra/sources/eidos/api.py -> build/lib/indra/sources/eidos 2025-08-31T03:14:21,208 copying indra/sources/eidos/cli.py -> build/lib/indra/sources/eidos 2025-08-31T03:14:21,210 copying indra/sources/eidos/processor.py -> build/lib/indra/sources/eidos 2025-08-31T03:14:21,212 copying indra/sources/eidos/__init__.py -> build/lib/indra/sources/eidos 2025-08-31T03:14:21,215 copying indra/sources/eidos/bio_processor.py -> build/lib/indra/sources/eidos 2025-08-31T03:14:21,217 copying indra/sources/eidos/server.py -> build/lib/indra/sources/eidos 2025-08-31T03:14:21,219 copying indra/sources/eidos/reader.py -> build/lib/indra/sources/eidos 2025-08-31T03:14:21,221 creating build/lib/indra/sources/geneways 2025-08-31T03:14:21,222 copying indra/sources/geneways/api.py -> build/lib/indra/sources/geneways 2025-08-31T03:14:21,224 copying indra/sources/geneways/symbols_parser.py -> build/lib/indra/sources/geneways 2025-08-31T03:14:21,226 copying indra/sources/geneways/action_parser.py -> build/lib/indra/sources/geneways 2025-08-31T03:14:21,229 copying indra/sources/geneways/actionmention_parser.py -> build/lib/indra/sources/geneways 2025-08-31T03:14:21,231 copying indra/sources/geneways/processor.py -> build/lib/indra/sources/geneways 2025-08-31T03:14:21,233 copying indra/sources/geneways/__init__.py -> build/lib/indra/sources/geneways 2025-08-31T03:14:21,235 copying indra/sources/geneways/find_full_text_sentence.py -> build/lib/indra/sources/geneways 2025-08-31T03:14:21,237 creating build/lib/indra/sources/gnbr 2025-08-31T03:14:21,238 copying indra/sources/gnbr/api.py -> build/lib/indra/sources/gnbr 2025-08-31T03:14:21,241 copying indra/sources/gnbr/processor.py -> build/lib/indra/sources/gnbr 2025-08-31T03:14:21,243 copying indra/sources/gnbr/__init__.py -> build/lib/indra/sources/gnbr 2025-08-31T03:14:21,246 creating build/lib/indra/sources/hprd 2025-08-31T03:14:21,247 copying indra/sources/hprd/api.py -> build/lib/indra/sources/hprd 2025-08-31T03:14:21,249 copying indra/sources/hprd/processor.py -> build/lib/indra/sources/hprd 2025-08-31T03:14:21,252 copying indra/sources/hprd/__init__.py -> build/lib/indra/sources/hprd 2025-08-31T03:14:21,254 creating build/lib/indra/sources/hypothesis 2025-08-31T03:14:21,255 copying indra/sources/hypothesis/api.py -> build/lib/indra/sources/hypothesis 2025-08-31T03:14:21,258 copying indra/sources/hypothesis/processor.py -> build/lib/indra/sources/hypothesis 2025-08-31T03:14:21,260 copying indra/sources/hypothesis/__init__.py -> build/lib/indra/sources/hypothesis 2025-08-31T03:14:21,262 copying indra/sources/hypothesis/annotator.py -> build/lib/indra/sources/hypothesis 2025-08-31T03:14:21,265 creating build/lib/indra/sources/index_cards 2025-08-31T03:14:21,266 copying indra/sources/index_cards/processor.py -> build/lib/indra/sources/index_cards 2025-08-31T03:14:21,269 copying indra/sources/index_cards/__init__.py -> build/lib/indra/sources/index_cards 2025-08-31T03:14:21,271 creating build/lib/indra/sources/indra_db_rest 2025-08-31T03:14:21,272 copying indra/sources/indra_db_rest/api.py -> build/lib/indra/sources/indra_db_rest 2025-08-31T03:14:21,276 copying indra/sources/indra_db_rest/query.py -> build/lib/indra/sources/indra_db_rest 2025-08-31T03:14:21,279 copying indra/sources/indra_db_rest/processor.py -> build/lib/indra/sources/indra_db_rest 2025-08-31T03:14:21,281 copying indra/sources/indra_db_rest/query_results.py -> build/lib/indra/sources/indra_db_rest 2025-08-31T03:14:21,284 copying indra/sources/indra_db_rest/util.py -> build/lib/indra/sources/indra_db_rest 2025-08-31T03:14:21,286 copying indra/sources/indra_db_rest/__init__.py -> build/lib/indra/sources/indra_db_rest 2025-08-31T03:14:21,288 copying indra/sources/indra_db_rest/exceptions.py -> build/lib/indra/sources/indra_db_rest 2025-08-31T03:14:21,291 creating build/lib/indra/sources/isi 2025-08-31T03:14:21,292 copying indra/sources/isi/api.py -> build/lib/indra/sources/isi 2025-08-31T03:14:21,295 copying indra/sources/isi/processor.py -> build/lib/indra/sources/isi 2025-08-31T03:14:21,298 copying indra/sources/isi/__init__.py -> build/lib/indra/sources/isi 2025-08-31T03:14:21,300 copying indra/sources/isi/experiments.py -> build/lib/indra/sources/isi 2025-08-31T03:14:21,302 copying indra/sources/isi/preprocessor.py -> build/lib/indra/sources/isi 2025-08-31T03:14:21,305 creating build/lib/indra/sources/minerva 2025-08-31T03:14:21,306 copying indra/sources/minerva/id_mapping.py -> build/lib/indra/sources/minerva 2025-08-31T03:14:21,308 copying indra/sources/minerva/api.py -> build/lib/indra/sources/minerva 2025-08-31T03:14:21,310 copying indra/sources/minerva/processor.py -> build/lib/indra/sources/minerva 2025-08-31T03:14:21,312 copying indra/sources/minerva/__init__.py -> build/lib/indra/sources/minerva 2025-08-31T03:14:21,314 copying indra/sources/minerva/minerva_client.py -> build/lib/indra/sources/minerva 2025-08-31T03:14:21,317 creating build/lib/indra/sources/ndex_cx 2025-08-31T03:14:21,318 copying indra/sources/ndex_cx/api.py -> build/lib/indra/sources/ndex_cx 2025-08-31T03:14:21,320 copying indra/sources/ndex_cx/processor.py -> build/lib/indra/sources/ndex_cx 2025-08-31T03:14:21,323 copying indra/sources/ndex_cx/__init__.py -> build/lib/indra/sources/ndex_cx 2025-08-31T03:14:21,325 creating build/lib/indra/sources/reach 2025-08-31T03:14:21,326 copying indra/sources/reach/api.py -> build/lib/indra/sources/reach 2025-08-31T03:14:21,329 copying indra/sources/reach/processor.py -> build/lib/indra/sources/reach 2025-08-31T03:14:21,332 copying indra/sources/reach/__init__.py -> build/lib/indra/sources/reach 2025-08-31T03:14:21,334 copying indra/sources/reach/reader.py -> build/lib/indra/sources/reach 2025-08-31T03:14:21,337 creating build/lib/indra/sources/omnipath 2025-08-31T03:14:21,338 copying indra/sources/omnipath/api.py -> build/lib/indra/sources/omnipath 2025-08-31T03:14:21,340 copying indra/sources/omnipath/processor.py -> build/lib/indra/sources/omnipath 2025-08-31T03:14:21,343 copying indra/sources/omnipath/__init__.py -> build/lib/indra/sources/omnipath 2025-08-31T03:14:21,345 creating build/lib/indra/sources/phosphoelm 2025-08-31T03:14:21,346 copying indra/sources/phosphoelm/api.py -> build/lib/indra/sources/phosphoelm 2025-08-31T03:14:21,348 copying indra/sources/phosphoelm/phosphoelm_mapping.py -> build/lib/indra/sources/phosphoelm 2025-08-31T03:14:21,350 copying indra/sources/phosphoelm/processor.py -> build/lib/indra/sources/phosphoelm 2025-08-31T03:14:21,353 copying indra/sources/phosphoelm/__init__.py -> build/lib/indra/sources/phosphoelm 2025-08-31T03:14:21,355 creating build/lib/indra/sources/rlimsp 2025-08-31T03:14:21,356 copying indra/sources/rlimsp/api.py -> build/lib/indra/sources/rlimsp 2025-08-31T03:14:21,359 copying indra/sources/rlimsp/processor.py -> build/lib/indra/sources/rlimsp 2025-08-31T03:14:21,362 copying indra/sources/rlimsp/__init__.py -> build/lib/indra/sources/rlimsp 2025-08-31T03:14:21,364 creating build/lib/indra/sources/semrep 2025-08-31T03:14:21,365 copying indra/sources/semrep/api.py -> build/lib/indra/sources/semrep 2025-08-31T03:14:21,367 copying indra/sources/semrep/processor.py -> build/lib/indra/sources/semrep 2025-08-31T03:14:21,369 copying indra/sources/semrep/__init__.py -> build/lib/indra/sources/semrep 2025-08-31T03:14:21,372 creating build/lib/indra/sources/signor 2025-08-31T03:14:21,373 copying indra/sources/signor/api.py -> build/lib/indra/sources/signor 2025-08-31T03:14:21,375 copying indra/sources/signor/processor.py -> build/lib/indra/sources/signor 2025-08-31T03:14:21,379 copying indra/sources/signor/__init__.py -> build/lib/indra/sources/signor 2025-08-31T03:14:21,381 creating build/lib/indra/sources/sparser 2025-08-31T03:14:21,382 copying indra/sources/sparser/api.py -> build/lib/indra/sources/sparser 2025-08-31T03:14:21,385 copying indra/sources/sparser/processor.py -> build/lib/indra/sources/sparser 2025-08-31T03:14:21,388 copying indra/sources/sparser/__init__.py -> build/lib/indra/sources/sparser 2025-08-31T03:14:21,390 copying indra/sources/sparser/xml_processor.py -> build/lib/indra/sources/sparser 2025-08-31T03:14:21,393 creating build/lib/indra/sources/tas 2025-08-31T03:14:21,394 copying indra/sources/tas/api.py -> build/lib/indra/sources/tas 2025-08-31T03:14:21,396 copying indra/sources/tas/processor.py -> build/lib/indra/sources/tas 2025-08-31T03:14:21,398 copying indra/sources/tas/__init__.py -> build/lib/indra/sources/tas 2025-08-31T03:14:21,401 creating build/lib/indra/sources/tees 2025-08-31T03:14:21,402 copying indra/sources/tees/api.py -> build/lib/indra/sources/tees 2025-08-31T03:14:21,405 copying indra/sources/tees/processor.py -> build/lib/indra/sources/tees 2025-08-31T03:14:21,407 copying indra/sources/tees/__init__.py -> build/lib/indra/sources/tees 2025-08-31T03:14:21,409 copying indra/sources/tees/parse_tees.py -> build/lib/indra/sources/tees 2025-08-31T03:14:21,413 creating build/lib/indra/sources/trips 2025-08-31T03:14:21,414 copying indra/sources/trips/client.py -> build/lib/indra/sources/trips 2025-08-31T03:14:21,416 copying indra/sources/trips/api.py -> build/lib/indra/sources/trips 2025-08-31T03:14:21,419 copying indra/sources/trips/processor.py -> build/lib/indra/sources/trips 2025-08-31T03:14:21,423 copying indra/sources/trips/__init__.py -> build/lib/indra/sources/trips 2025-08-31T03:14:21,425 copying indra/sources/trips/analyze_ekbs.py -> build/lib/indra/sources/trips 2025-08-31T03:14:21,428 copying indra/sources/trips/drum_reader.py -> build/lib/indra/sources/trips 2025-08-31T03:14:21,431 creating build/lib/indra/sources/trrust 2025-08-31T03:14:21,432 copying indra/sources/trrust/api.py -> build/lib/indra/sources/trrust 2025-08-31T03:14:21,434 copying indra/sources/trrust/processor.py -> build/lib/indra/sources/trrust 2025-08-31T03:14:21,436 copying indra/sources/trrust/__init__.py -> build/lib/indra/sources/trrust 2025-08-31T03:14:21,439 creating build/lib/indra/sources/ubibrowser 2025-08-31T03:14:21,440 copying indra/sources/ubibrowser/api.py -> build/lib/indra/sources/ubibrowser 2025-08-31T03:14:21,442 copying indra/sources/ubibrowser/processor.py -> build/lib/indra/sources/ubibrowser 2025-08-31T03:14:21,444 copying indra/sources/ubibrowser/__init__.py -> build/lib/indra/sources/ubibrowser 2025-08-31T03:14:21,446 creating build/lib/indra/sources/virhostnet 2025-08-31T03:14:21,447 copying indra/sources/virhostnet/api.py -> build/lib/indra/sources/virhostnet 2025-08-31T03:14:21,450 copying indra/sources/virhostnet/processor.py -> build/lib/indra/sources/virhostnet 2025-08-31T03:14:21,452 copying indra/sources/virhostnet/__init__.py -> build/lib/indra/sources/virhostnet 2025-08-31T03:14:21,454 creating build/lib/indra/sources/wormbase 2025-08-31T03:14:21,455 copying indra/sources/wormbase/api.py -> build/lib/indra/sources/wormbase 2025-08-31T03:14:21,458 copying indra/sources/wormbase/processor.py -> build/lib/indra/sources/wormbase 2025-08-31T03:14:21,461 copying indra/sources/wormbase/__init__.py -> build/lib/indra/sources/wormbase 2025-08-31T03:14:21,463 creating build/lib/indra/resources 2025-08-31T03:14:21,465 copying indra/resources/greek_alphabet.py -> build/lib/indra/resources 2025-08-31T03:14:21,467 copying indra/resources/__init__.py -> build/lib/indra/resources 2025-08-31T03:14:21,469 copying indra/resources/update_resources.py -> build/lib/indra/resources 2025-08-31T03:14:21,472 copying indra/resources/add_grounding_resources_from_csv.py -> build/lib/indra/resources 2025-08-31T03:14:21,475 creating build/lib/indra/statements 2025-08-31T03:14:21,476 copying indra/statements/statements.py -> build/lib/indra/statements 2025-08-31T03:14:21,482 copying indra/statements/concept.py -> build/lib/indra/statements 2025-08-31T03:14:21,485 copying indra/statements/io.py -> build/lib/indra/statements 2025-08-31T03:14:21,487 copying indra/statements/util.py -> build/lib/indra/statements 2025-08-31T03:14:21,489 copying indra/statements/__init__.py -> build/lib/indra/statements 2025-08-31T03:14:21,492 copying indra/statements/delta.py -> build/lib/indra/statements 2025-08-31T03:14:21,494 copying indra/statements/validate.py -> build/lib/indra/statements 2025-08-31T03:14:21,497 copying indra/statements/resources.py -> build/lib/indra/statements 2025-08-31T03:14:21,499 copying indra/statements/agent.py -> build/lib/indra/statements 2025-08-31T03:14:21,502 copying indra/statements/context.py -> build/lib/indra/statements 2025-08-31T03:14:21,505 copying indra/statements/evidence.py -> build/lib/indra/statements 2025-08-31T03:14:21,510 creating build/lib/indra/tests 2025-08-31T03:14:21,511 copying indra/tests/test_graph_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,513 copying indra/tests/test_eidos.py -> build/lib/indra/tests 2025-08-31T03:14:21,515 copying indra/tests/test_delta.py -> build/lib/indra/tests 2025-08-31T03:14:21,517 copying indra/tests/test_uniprot_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,519 copying indra/tests/test_custom_preassembly.py -> build/lib/indra/tests 2025-08-31T03:14:21,521 copying indra/tests/test_fix_invalidities.py -> build/lib/indra/tests 2025-08-31T03:14:21,523 copying indra/tests/test_tees.py -> build/lib/indra/tests 2025-08-31T03:14:21,525 copying indra/tests/test_context.py -> build/lib/indra/tests 2025-08-31T03:14:21,527 copying indra/tests/test_chebi_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,529 copying indra/tests/test_html_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,532 copying indra/tests/test_trrust.py -> build/lib/indra/tests 2025-08-31T03:14:21,534 copying indra/tests/test_virhostnet.py -> build/lib/indra/tests 2025-08-31T03:14:21,537 copying indra/tests/test_pybel_api.py -> build/lib/indra/tests 2025-08-31T03:14:21,539 copying indra/tests/test_identifiers.py -> build/lib/indra/tests 2025-08-31T03:14:21,542 copying indra/tests/test_biofactoid.py -> build/lib/indra/tests 2025-08-31T03:14:21,544 copying indra/tests/test_bmi_wrapper.py -> build/lib/indra/tests 2025-08-31T03:14:21,546 copying indra/tests/test_incremental_model.py -> build/lib/indra/tests 2025-08-31T03:14:21,548 copying indra/tests/test_sparser.py -> build/lib/indra/tests 2025-08-31T03:14:21,550 copying indra/tests/make_mock_ontology.py -> build/lib/indra/tests 2025-08-31T03:14:21,552 copying indra/tests/test_belief_sklearn.py -> build/lib/indra/tests 2025-08-31T03:14:21,555 copying indra/tests/test_ontology.py -> build/lib/indra/tests 2025-08-31T03:14:21,557 copying indra/tests/test_rasmachine.py -> build/lib/indra/tests 2025-08-31T03:14:21,559 copying indra/tests/test_benchmarks.py -> build/lib/indra/tests 2025-08-31T03:14:21,561 copying indra/tests/test_preassembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,565 copying indra/tests/test_sbgn_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,567 copying indra/tests/conftest.py -> build/lib/indra/tests 2025-08-31T03:14:21,569 copying indra/tests/test_phosphoelm_processor.py -> build/lib/indra/tests 2025-08-31T03:14:21,571 copying indra/tests/test_model_checker.py -> build/lib/indra/tests 2025-08-31T03:14:21,576 copying indra/tests/test_elsevier_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,578 copying indra/tests/test_literature.py -> build/lib/indra/tests 2025-08-31T03:14:21,580 copying indra/tests/util.py -> build/lib/indra/tests 2025-08-31T03:14:21,582 copying indra/tests/test_mirbase_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,584 copying indra/tests/test_cyjs_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,587 copying indra/tests/test_pubchem_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,589 copying indra/tests/test_cbio_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,591 copying indra/tests/__init__.py -> build/lib/indra/tests 2025-08-31T03:14:21,593 copying indra/tests/test_wormbase_processor.py -> build/lib/indra/tests 2025-08-31T03:14:21,594 copying indra/tests/test_biogrid.py -> build/lib/indra/tests 2025-08-31T03:14:21,596 copying indra/tests/test_json_schema.py -> build/lib/indra/tests 2025-08-31T03:14:21,599 copying indra/tests/test_pubmed_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,602 copying indra/tests/test_statement_validate.py -> build/lib/indra/tests 2025-08-31T03:14:21,604 copying indra/tests/test_statements.py -> build/lib/indra/tests 2025-08-31T03:14:21,608 copying indra/tests/test_pipeline.py -> build/lib/indra/tests 2025-08-31T03:14:21,610 copying indra/tests/test_util.py -> build/lib/indra/tests 2025-08-31T03:14:21,612 copying indra/tests/test_coci_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,614 copying indra/tests/test_bioregistry.py -> build/lib/indra/tests 2025-08-31T03:14:21,616 copying indra/tests/test_gnbr.py -> build/lib/indra/tests 2025-08-31T03:14:21,618 copying indra/tests/test_hprd.py -> build/lib/indra/tests 2025-08-31T03:14:21,621 copying indra/tests/test_go_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,623 copying indra/tests/test_pybel_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,625 copying indra/tests/test_groundingmapper.py -> build/lib/indra/tests 2025-08-31T03:14:21,628 copying indra/tests/test_rlimsp.py -> build/lib/indra/tests 2025-08-31T03:14:21,630 copying indra/tests/test_chembl_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,632 copying indra/tests/test_medscan.py -> build/lib/indra/tests 2025-08-31T03:14:21,635 copying indra/tests/test_db_rest.py -> build/lib/indra/tests 2025-08-31T03:14:21,638 copying indra/tests/test_sif_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,640 copying indra/tests/test_pmc_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,642 copying indra/tests/test_s3_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,644 copying indra/tests/test_signor.py -> build/lib/indra/tests 2025-08-31T03:14:21,648 copying indra/tests/test_lincs_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,650 copying indra/tests/test_expand_families.py -> build/lib/indra/tests 2025-08-31T03:14:21,652 copying indra/tests/test_adaptive_assembly.py -> build/lib/indra/tests 2025-08-31T03:14:21,654 copying indra/tests/test_kappa_util.py -> build/lib/indra/tests 2025-08-31T03:14:21,656 copying indra/tests/test_trips_ekbs.py -> build/lib/indra/tests 2025-08-31T03:14:21,659 copying indra/tests/test_assemble_corpus.py -> build/lib/indra/tests 2025-08-31T03:14:21,663 copying indra/tests/test_acsn.py -> build/lib/indra/tests 2025-08-31T03:14:21,665 copying indra/tests/test_cx_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,667 copying indra/tests/test_hgnc_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,669 copying indra/tests/test_mesh.py -> build/lib/indra/tests 2025-08-31T03:14:21,672 copying indra/tests/test_grounding_resources.py -> build/lib/indra/tests 2025-08-31T03:14:21,674 copying indra/tests/test_biopax.py -> build/lib/indra/tests 2025-08-31T03:14:21,676 copying indra/tests/test_index_card_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,679 copying indra/tests/test_biolookup_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,681 copying indra/tests/test_hypothesis.py -> build/lib/indra/tests 2025-08-31T03:14:21,684 copying indra/tests/test_reach.py -> build/lib/indra/tests 2025-08-31T03:14:21,686 copying indra/tests/test_ndex_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,688 copying indra/tests/test_pysb_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,692 copying indra/tests/test_mgi_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,694 copying indra/tests/test_sparser_xml.py -> build/lib/indra/tests 2025-08-31T03:14:21,696 copying indra/tests/test_geneways.py -> build/lib/indra/tests 2025-08-31T03:14:21,699 copying indra/tests/test_pathfinding.py -> build/lib/indra/tests 2025-08-31T03:14:21,702 copying indra/tests/test_crossref_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,704 copying indra/tests/test_ndex_cx_processor.py -> build/lib/indra/tests 2025-08-31T03:14:21,706 copying indra/tests/test_belief_engine.py -> build/lib/indra/tests 2025-08-31T03:14:21,709 copying indra/tests/test_isi.py -> build/lib/indra/tests 2025-08-31T03:14:21,711 copying indra/tests/test_tsv_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,713 copying indra/tests/test_statements_serialization.py -> build/lib/indra/tests 2025-08-31T03:14:21,716 copying indra/tests/test_ctd.py -> build/lib/indra/tests 2025-08-31T03:14:21,718 copying indra/tests/test_minerva.py -> build/lib/indra/tests 2025-08-31T03:14:21,720 copying indra/tests/test_drugbank.py -> build/lib/indra/tests 2025-08-31T03:14:21,722 copying indra/tests/test_sitemapper.py -> build/lib/indra/tests 2025-08-31T03:14:21,724 copying indra/tests/test_english_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,727 copying indra/tests/test_rgd_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,729 copying indra/tests/test_tas.py -> build/lib/indra/tests 2025-08-31T03:14:21,731 copying indra/tests/test_adeft_tools.py -> build/lib/indra/tests 2025-08-31T03:14:21,733 copying indra/tests/test_trips.py -> build/lib/indra/tests 2025-08-31T03:14:21,736 copying indra/tests/test_taxonomy_client.py -> build/lib/indra/tests 2025-08-31T03:14:21,739 copying indra/tests/test_rest_api.py -> build/lib/indra/tests 2025-08-31T03:14:21,744 copying indra/tests/test_indranet_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,977 copying indra/tests/test_kami_assembler.py -> build/lib/indra/tests 2025-08-31T03:14:21,981 copying indra/tests/test_mechlinker.py -> build/lib/indra/tests 2025-08-31T03:14:21,985 copying indra/tests/test_docs_code.py -> build/lib/indra/tests 2025-08-31T03:14:21,989 copying indra/tests/test_omnipath.py -> build/lib/indra/tests 2025-08-31T03:14:21,993 creating build/lib/indra/tests/test_obo_clients 2025-08-31T03:14:21,996 copying indra/tests/test_obo_clients/test_efo_client.py -> build/lib/indra/tests/test_obo_clients 2025-08-31T03:14:21,999 copying indra/tests/test_obo_clients/__init__.py -> build/lib/indra/tests/test_obo_clients 2025-08-31T03:14:22,001 copying indra/tests/test_obo_clients/test_hp_client.py -> build/lib/indra/tests/test_obo_clients 2025-08-31T03:14:22,003 copying indra/tests/test_obo_clients/test_ec_client.py -> build/lib/indra/tests/test_obo_clients 2025-08-31T03:14:22,005 copying indra/tests/test_obo_clients/test_mondo_client.py -> build/lib/indra/tests/test_obo_clients 2025-08-31T03:14:22,009 copying indra/tests/test_obo_clients/test_ido_client.py -> build/lib/indra/tests/test_obo_clients 2025-08-31T03:14:22,015 copying indra/tests/test_obo_clients/test_doid_client.py -> build/lib/indra/tests/test_obo_clients 2025-08-31T03:14:22,022 creating build/lib/indra/tools 2025-08-31T03:14:22,025 copying indra/tools/hypothesis_annotator.py -> build/lib/indra/tools 2025-08-31T03:14:22,032 copying indra/tools/fix_invalidities.py -> build/lib/indra/tools 2025-08-31T03:14:22,038 copying indra/tools/expand_families.py -> build/lib/indra/tools 2025-08-31T03:14:22,244 copying indra/tools/__init__.py -> build/lib/indra/tools 2025-08-31T03:14:22,248 copying indra/tools/analyze_ontology.py -> build/lib/indra/tools 2025-08-31T03:14:22,251 copying indra/tools/executable_subnetwork.py -> build/lib/indra/tools 2025-08-31T03:14:22,254 copying indra/tools/assemble_corpus.py -> build/lib/indra/tools 2025-08-31T03:14:22,261 copying indra/tools/extract_grounding_map.py -> build/lib/indra/tools 2025-08-31T03:14:22,264 copying indra/tools/incremental_model.py -> build/lib/indra/tools 2025-08-31T03:14:22,268 copying indra/tools/gene_network.py -> build/lib/indra/tools 2025-08-31T03:14:22,271 copying indra/tools/mechlinker_queries.py -> build/lib/indra/tools 2025-08-31T03:14:22,274 copying indra/tools/adaptive_assembly.py -> build/lib/indra/tools 2025-08-31T03:14:22,276 creating build/lib/indra/tools/machine 2025-08-31T03:14:22,278 copying indra/tools/machine/cli.py -> build/lib/indra/tools/machine 2025-08-31T03:14:22,280 copying indra/tools/machine/__init__.py -> build/lib/indra/tools/machine 2025-08-31T03:14:22,282 copying indra/tools/machine/__main__.py -> build/lib/indra/tools/machine 2025-08-31T03:14:22,285 copying indra/tools/machine/config.py -> build/lib/indra/tools/machine 2025-08-31T03:14:22,287 copying indra/tools/machine/twitter_client.py -> build/lib/indra/tools/machine 2025-08-31T03:14:22,289 copying indra/tools/machine/gmail_client.py -> build/lib/indra/tools/machine 2025-08-31T03:14:22,291 copying indra/tools/machine/machine.py -> build/lib/indra/tools/machine 2025-08-31T03:14:22,295 creating build/lib/indra/util 2025-08-31T03:14:22,299 copying indra/util/_require_python3.py -> build/lib/indra/util 2025-08-31T03:14:22,301 copying indra/util/get_version.py -> build/lib/indra/util 2025-08-31T03:14:22,305 copying indra/util/perm_cache.py -> build/lib/indra/util 2025-08-31T03:14:22,307 copying indra/util/plot_formatting.py -> build/lib/indra/util 2025-08-31T03:14:22,309 copying indra/util/statement_presentation.py -> build/lib/indra/util 2025-08-31T03:14:22,313 copying indra/util/__init__.py -> build/lib/indra/util 2025-08-31T03:14:22,316 copying indra/util/nested_dict.py -> build/lib/indra/util 2025-08-31T03:14:22,318 copying indra/util/multiprocessing_traceback.py -> build/lib/indra/util 2025-08-31T03:14:22,320 copying indra/util/aws.py -> build/lib/indra/util 2025-08-31T03:14:22,323 copying indra/util/repickle_stmts.py -> build/lib/indra/util 2025-08-31T03:14:22,326 running egg_info 2025-08-31T03:14:22,357 writing indra.egg-info/PKG-INFO 2025-08-31T03:14:22,385 writing dependency_links to indra.egg-info/dependency_links.txt 2025-08-31T03:14:22,387 writing entry points to indra.egg-info/entry_points.txt 2025-08-31T03:14:22,400 writing requirements to indra.egg-info/requires.txt 2025-08-31T03:14:22,401 writing top-level names to indra.egg-info/top_level.txt 2025-08-31T03:14:22,497 reading manifest file 'indra.egg-info/SOURCES.txt' 2025-08-31T03:14:22,538 reading manifest template 'MANIFEST.in' 2025-08-31T03:14:22,561 warning: no files found matching 'indra/tools/reading/util/reach_conf_fmt.txt' 2025-08-31T03:14:22,562 warning: no files found matching 'indra/assemblers/cag/cag_style.json' 2025-08-31T03:14:22,562 warning: no files found matching 'indra/assemblers/cag/cag_template.js' 2025-08-31T03:14:22,563 adding license file 'LICENSE' 2025-08-31T03:14:22,593 writing manifest file 'indra.egg-info/SOURCES.txt' 2025-08-31T03:14:22,599 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'indra.assemblers.html.templates.indra' is absent from the `packages` configuration. 2025-08-31T03:14:22,599 !! 2025-08-31T03:14:22,600 ******************************************************************************** 2025-08-31T03:14:22,601 ############################ 2025-08-31T03:14:22,602 # Package would be ignored # 2025-08-31T03:14:22,602 ############################ 2025-08-31T03:14:22,603 Python recognizes 'indra.assemblers.html.templates.indra' as an importable package[^1], 2025-08-31T03:14:22,603 but it is absent from setuptools' `packages` configuration. 2025-08-31T03:14:22,604 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T03:14:22,605 package, please make sure that 'indra.assemblers.html.templates.indra' is explicitly added 2025-08-31T03:14:22,605 to the `packages` configuration field. 2025-08-31T03:14:22,606 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T03:14:22,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T03:14:22,607 instead of `find_packages(...)`/`find:`). 2025-08-31T03:14:22,609 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T03:14:22,610 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T03:14:22,611 If you don't want 'indra.assemblers.html.templates.indra' to be distributed and are 2025-08-31T03:14:22,612 already explicitly excluding 'indra.assemblers.html.templates.indra' via 2025-08-31T03:14:22,612 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T03:14:22,613 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T03:14:22,613 combination with a more fine grained `package-data` configuration. 2025-08-31T03:14:22,614 You can read more about "package data files" on setuptools documentation page: 2025-08-31T03:14:22,615 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T03:14:22,616 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T03:14:22,616 even if it does not contain any `.py` files. 2025-08-31T03:14:22,617 On the other hand, currently there is no concept of package data 2025-08-31T03:14:22,617 directory, all directories are treated like packages. 2025-08-31T03:14:22,618 ******************************************************************************** 2025-08-31T03:14:22,618 !! 2025-08-31T03:14:22,619 check.warn(importable) 2025-08-31T03:14:22,620 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'indra.benchmarks.bioprocesses' is absent from the `packages` configuration. 2025-08-31T03:14:22,620 !! 2025-08-31T03:14:22,621 ******************************************************************************** 2025-08-31T03:14:22,621 ############################ 2025-08-31T03:14:22,622 # Package would be ignored # 2025-08-31T03:14:22,622 ############################ 2025-08-31T03:14:22,623 Python recognizes 'indra.benchmarks.bioprocesses' as an importable package[^1], 2025-08-31T03:14:22,624 but it is absent from setuptools' `packages` configuration. 2025-08-31T03:14:22,625 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T03:14:22,625 package, please make sure that 'indra.benchmarks.bioprocesses' is explicitly added 2025-08-31T03:14:22,626 to the `packages` configuration field. 2025-08-31T03:14:22,627 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T03:14:22,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T03:14:22,628 instead of `find_packages(...)`/`find:`). 2025-08-31T03:14:22,629 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T03:14:22,630 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T03:14:22,631 If you don't want 'indra.benchmarks.bioprocesses' to be distributed and are 2025-08-31T03:14:22,632 already explicitly excluding 'indra.benchmarks.bioprocesses' via 2025-08-31T03:14:22,632 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T03:14:22,633 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T03:14:22,633 combination with a more fine grained `package-data` configuration. 2025-08-31T03:14:22,634 You can read more about "package data files" on setuptools documentation page: 2025-08-31T03:14:22,635 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T03:14:22,637 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T03:14:22,638 even if it does not contain any `.py` files. 2025-08-31T03:14:22,638 On the other hand, currently there is no concept of package data 2025-08-31T03:14:22,639 directory, all directories are treated like packages. 2025-08-31T03:14:22,639 ******************************************************************************** 2025-08-31T03:14:22,641 !! 2025-08-31T03:14:22,641 check.warn(importable) 2025-08-31T03:14:22,642 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'indra.benchmarks.phosphorylations' is absent from the `packages` configuration. 2025-08-31T03:14:22,642 !! 2025-08-31T03:14:22,643 ******************************************************************************** 2025-08-31T03:14:22,643 ############################ 2025-08-31T03:14:22,644 # Package would be ignored # 2025-08-31T03:14:22,644 ############################ 2025-08-31T03:14:22,645 Python recognizes 'indra.benchmarks.phosphorylations' as an importable package[^1], 2025-08-31T03:14:22,645 but it is absent from setuptools' `packages` configuration. 2025-08-31T03:14:22,646 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T03:14:22,646 package, please make sure that 'indra.benchmarks.phosphorylations' is explicitly added 2025-08-31T03:14:22,647 to the `packages` configuration field. 2025-08-31T03:14:22,648 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T03:14:22,648 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T03:14:22,649 instead of `find_packages(...)`/`find:`). 2025-08-31T03:14:22,649 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T03:14:22,650 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T03:14:22,651 If you don't want 'indra.benchmarks.phosphorylations' to be distributed and are 2025-08-31T03:14:22,652 already explicitly excluding 'indra.benchmarks.phosphorylations' via 2025-08-31T03:14:22,652 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T03:14:22,653 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T03:14:22,653 combination with a more fine grained `package-data` configuration. 2025-08-31T03:14:22,654 You can read more about "package data files" on setuptools documentation page: 2025-08-31T03:14:22,655 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T03:14:22,657 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T03:14:22,658 even if it does not contain any `.py` files. 2025-08-31T03:14:22,658 On the other hand, currently there is no concept of package data 2025-08-31T03:14:22,659 directory, all directories are treated like packages. 2025-08-31T03:14:22,659 ******************************************************************************** 2025-08-31T03:14:22,660 !! 2025-08-31T03:14:22,661 check.warn(importable) 2025-08-31T03:14:22,662 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'indra.resources.famplex' is absent from the `packages` configuration. 2025-08-31T03:14:22,662 !! 2025-08-31T03:14:22,663 ******************************************************************************** 2025-08-31T03:14:22,664 ############################ 2025-08-31T03:14:22,665 # Package would be ignored # 2025-08-31T03:14:22,665 ############################ 2025-08-31T03:14:22,666 Python recognizes 'indra.resources.famplex' as an importable package[^1], 2025-08-31T03:14:22,666 but it is absent from setuptools' `packages` configuration. 2025-08-31T03:14:22,667 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T03:14:22,668 package, please make sure that 'indra.resources.famplex' is explicitly added 2025-08-31T03:14:22,668 to the `packages` configuration field. 2025-08-31T03:14:22,670 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T03:14:22,670 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T03:14:22,671 instead of `find_packages(...)`/`find:`). 2025-08-31T03:14:22,672 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T03:14:22,672 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T03:14:22,673 If you don't want 'indra.resources.famplex' to be distributed and are 2025-08-31T03:14:22,674 already explicitly excluding 'indra.resources.famplex' via 2025-08-31T03:14:22,674 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T03:14:22,675 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T03:14:22,675 combination with a more fine grained `package-data` configuration. 2025-08-31T03:14:22,676 You can read more about "package data files" on setuptools documentation page: 2025-08-31T03:14:22,677 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T03:14:22,678 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T03:14:22,679 even if it does not contain any `.py` files. 2025-08-31T03:14:22,679 On the other hand, currently there is no concept of package data 2025-08-31T03:14:22,680 directory, all directories are treated like packages. 2025-08-31T03:14:22,680 ******************************************************************************** 2025-08-31T03:14:22,681 !! 2025-08-31T03:14:22,682 check.warn(importable) 2025-08-31T03:14:22,682 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'indra.resources.grounding' is absent from the `packages` configuration. 2025-08-31T03:14:22,683 !! 2025-08-31T03:14:22,685 ******************************************************************************** 2025-08-31T03:14:22,685 ############################ 2025-08-31T03:14:22,686 # Package would be ignored # 2025-08-31T03:14:22,686 ############################ 2025-08-31T03:14:22,687 Python recognizes 'indra.resources.grounding' as an importable package[^1], 2025-08-31T03:14:22,688 but it is absent from setuptools' `packages` configuration. 2025-08-31T03:14:22,689 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T03:14:22,690 package, please make sure that 'indra.resources.grounding' is explicitly added 2025-08-31T03:14:22,690 to the `packages` configuration field. 2025-08-31T03:14:22,692 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T03:14:22,692 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T03:14:22,693 instead of `find_packages(...)`/`find:`). 2025-08-31T03:14:22,694 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T03:14:22,695 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T03:14:22,697 If you don't want 'indra.resources.grounding' to be distributed and are 2025-08-31T03:14:22,697 already explicitly excluding 'indra.resources.grounding' via 2025-08-31T03:14:22,698 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T03:14:22,703 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T03:14:22,714 combination with a more fine grained `package-data` configuration. 2025-08-31T03:14:22,739 You can read more about "package data files" on setuptools documentation page: 2025-08-31T03:14:22,742 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T03:14:22,754 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T03:14:22,755 even if it does not contain any `.py` files. 2025-08-31T03:14:22,756 On the other hand, currently there is no concept of package data 2025-08-31T03:14:22,757 directory, all directories are treated like packages. 2025-08-31T03:14:22,757 ******************************************************************************** 2025-08-31T03:14:22,758 !! 2025-08-31T03:14:22,758 check.warn(importable) 2025-08-31T03:14:22,759 creating build/lib/indra/assemblers/html/templates/indra 2025-08-31T03:14:22,759 copying indra/assemblers/html/templates/indra/statements_view.html -> build/lib/indra/assemblers/html/templates/indra 2025-08-31T03:14:22,760 copying indra/assemblers/html/templates/indra/template.html -> build/lib/indra/assemblers/html/templates/indra 2025-08-31T03:14:22,760 creating build/lib/indra/benchmarks/bioprocesses 2025-08-31T03:14:22,761 copying indra/benchmarks/bioprocesses/__init__.py -> build/lib/indra/benchmarks/bioprocesses 2025-08-31T03:14:22,761 copying indra/benchmarks/bioprocesses/__main__.py -> build/lib/indra/benchmarks/bioprocesses 2025-08-31T03:14:22,762 creating build/lib/indra/benchmarks/phosphorylations 2025-08-31T03:14:22,762 copying indra/benchmarks/phosphorylations/__init__.py -> build/lib/indra/benchmarks/phosphorylations 2025-08-31T03:14:22,763 copying indra/literature/pmids_auth_xml.txt -> build/lib/indra/literature 2025-08-31T03:14:22,763 copying indra/literature/pmids_fulltext.txt -> build/lib/indra/literature 2025-08-31T03:14:22,964 copying indra/literature/pmids_oa_txt.txt -> build/lib/indra/literature 2025-08-31T03:14:23,130 copying indra/literature/pmids_oa_xml.txt -> build/lib/indra/literature 2025-08-31T03:14:23,437 copying indra/sources/isi/isi_verb_to_indra_statement_type.tsv -> build/lib/indra/sources/isi 2025-08-31T03:14:23,440 copying indra/sources/reach/reach_rule_regexps.txt -> build/lib/indra/sources/reach 2025-08-31T03:14:23,443 copying indra/sources/semrep/Dockerfile -> build/lib/indra/sources/semrep 2025-08-31T03:14:23,446 copying indra/resources/README.txt -> build/lib/indra/resources 2025-08-31T03:14:23,449 copying indra/resources/amino_acids.tsv -> build/lib/indra/resources 2025-08-31T03:14:23,452 copying indra/resources/bel_chebi_map.tsv -> build/lib/indra/resources 2025-08-31T03:14:23,496 copying indra/resources/biomappings.tsv -> build/lib/indra/resources 2025-08-31T03:14:23,501 copying indra/resources/bioregistry.json -> build/lib/indra/resources 2025-08-31T03:14:23,506 copying indra/resources/cas_to_chebi.tsv -> build/lib/indra/resources 2025-08-31T03:14:23,518 copying indra/resources/chebi.json -> build/lib/indra/resources 2025-08-31T03:14:24,201 copying indra/resources/chebi_to_chembl.tsv -> build/lib/indra/resources 2025-08-31T03:14:24,220 copying indra/resources/chebi_to_pubchem.tsv -> build/lib/indra/resources 2025-08-31T03:14:24,262 copying indra/resources/chembl_tas.csv -> build/lib/indra/resources 2025-08-31T03:14:24,317 copying indra/resources/curated_site_map.csv -> build/lib/indra/resources 2025-08-31T03:14:24,319 copying indra/resources/db_refs_map.csv -> build/lib/indra/resources 2025-08-31T03:14:24,322 copying indra/resources/default_belief_probs.json -> build/lib/indra/resources 2025-08-31T03:14:24,324 copying indra/resources/default_config.ini -> build/lib/indra/resources 2025-08-31T03:14:24,326 copying indra/resources/doid.json -> build/lib/indra/resources 2025-08-31T03:14:24,412 copying indra/resources/drugbank_mappings.tsv -> build/lib/indra/resources 2025-08-31T03:14:24,438 copying indra/resources/eccode.json -> build/lib/indra/resources 2025-08-31T03:14:24,468 copying indra/resources/efo.json -> build/lib/indra/resources 2025-08-31T03:14:24,563 copying indra/resources/famplex_map.tsv -> build/lib/indra/resources 2025-08-31T03:14:24,567 copying indra/resources/go.json -> build/lib/indra/resources 2025-08-31T03:14:24,806 copying indra/resources/hgnc_entries.tsv -> build/lib/indra/resources 2025-08-31T03:14:24,905 copying indra/resources/hgnc_uniprot_preferred.csv -> build/lib/indra/resources 2025-08-31T03:14:24,907 copying indra/resources/hmdb_to_chebi.tsv -> build/lib/indra/resources 2025-08-31T03:14:24,913 copying indra/resources/hms_lincs_extra.tsv -> build/lib/indra/resources 2025-08-31T03:14:24,917 copying indra/resources/hp.json -> build/lib/indra/resources 2025-08-31T03:14:25,012 copying indra/resources/identifiers_patterns.json -> build/lib/indra/resources 2025-08-31T03:14:25,016 copying indra/resources/ido.json -> build/lib/indra/resources 2025-08-31T03:14:25,235 copying indra/resources/index_card_schema.json -> build/lib/indra/resources 2025-08-31T03:14:25,241 copying indra/resources/kinases.tsv -> build/lib/indra/resources 2025-08-31T03:14:25,249 copying indra/resources/lincs_proteins.json -> build/lib/indra/resources 2025-08-31T03:14:25,285 copying indra/resources/lincs_small_molecules.json -> build/lib/indra/resources 2025-08-31T03:14:25,300 copying indra/resources/lspci.tsv -> build/lib/indra/resources 2025-08-31T03:14:25,348 copying indra/resources/mesh_cas_mappings.tsv -> build/lib/indra/resources 2025-08-31T03:14:25,370 copying indra/resources/mesh_id_label_mappings.tsv -> build/lib/indra/resources 2025-08-31T03:14:25,458 copying indra/resources/mesh_mappings.tsv -> build/lib/indra/resources 2025-08-31T03:14:25,488 copying indra/resources/mesh_supp_id_label_mappings.tsv -> build/lib/indra/resources 2025-08-31T03:14:25,844 copying indra/resources/mgi_entries.tsv -> build/lib/indra/resources 2025-08-31T03:14:25,905 copying indra/resources/mirbase.tsv -> build/lib/indra/resources 2025-08-31T03:14:25,914 copying indra/resources/mondo.json -> build/lib/indra/resources 2025-08-31T03:14:26,125 copying indra/resources/ncit_allele_map.tsv -> build/lib/indra/resources 2025-08-31T03:14:26,129 copying indra/resources/ncit_map.tsv -> build/lib/indra/resources 2025-08-31T03:14:26,140 copying indra/resources/phosphatases.tsv -> build/lib/indra/resources 2025-08-31T03:14:26,142 copying indra/resources/pubchem_mesh_map.tsv -> build/lib/indra/resources 2025-08-31T03:14:26,170 copying indra/resources/pubmed_retractions.tsv -> build/lib/indra/resources 2025-08-31T03:14:26,176 copying indra/resources/ras_pathway_proteins.csv -> build/lib/indra/resources 2025-08-31T03:14:26,178 copying indra/resources/rgd_entries.tsv -> build/lib/indra/resources 2025-08-31T03:14:26,224 copying indra/resources/selventa_entries.tsv -> build/lib/indra/resources 2025-08-31T03:14:26,229 copying indra/resources/source_info.json -> build/lib/indra/resources 2025-08-31T03:14:26,232 copying indra/resources/source_mapping.json -> build/lib/indra/resources 2025-08-31T03:14:26,234 copying indra/resources/statements_schema.json -> build/lib/indra/resources 2025-08-31T03:14:26,238 copying indra/resources/transcription_factors.csv -> build/lib/indra/resources 2025-08-31T03:14:26,242 copying indra/resources/uniprot_subcell_loc.tsv -> build/lib/indra/resources 2025-08-31T03:14:26,245 creating build/lib/indra/resources/famplex 2025-08-31T03:14:26,247 copying indra/resources/famplex/entities.csv -> build/lib/indra/resources/famplex 2025-08-31T03:14:26,250 copying indra/resources/famplex/equivalences.csv -> build/lib/indra/resources/famplex 2025-08-31T03:14:26,256 copying indra/resources/famplex/gene_prefixes.csv -> build/lib/indra/resources/famplex 2025-08-31T03:14:26,259 copying indra/resources/famplex/grounding_map.csv -> build/lib/indra/resources/famplex 2025-08-31T03:14:26,265 copying indra/resources/famplex/relations.csv -> build/lib/indra/resources/famplex 2025-08-31T03:14:26,273 creating build/lib/indra/resources/grounding 2025-08-31T03:14:26,274 copying indra/resources/grounding/agents.json -> build/lib/indra/resources/grounding 2025-08-31T03:14:26,278 copying indra/resources/grounding/covid_grounding.csv -> build/lib/indra/resources/grounding 2025-08-31T03:14:26,280 copying indra/resources/grounding/extra_gmap_files.json -> build/lib/indra/resources/grounding 2025-08-31T03:14:26,283 copying indra/resources/grounding/gene_grounding.csv -> build/lib/indra/resources/grounding 2025-08-31T03:14:26,286 copying indra/resources/grounding/grounding_map.csv -> build/lib/indra/resources/grounding 2025-08-31T03:14:26,291 copying indra/resources/grounding/ignore.csv -> build/lib/indra/resources/grounding 2025-08-31T03:14:26,294 copying indra/resources/grounding/misgrounding_map.csv -> build/lib/indra/resources/grounding 2025-08-31T03:14:26,297 copying indra/tools/machine/default-config.yaml -> build/lib/indra/tools/machine 2025-08-31T03:14:26,387 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-08-31T03:14:26,388 !! 2025-08-31T03:14:26,389 ******************************************************************************** 2025-08-31T03:14:26,389 Please avoid running ``setup.py`` directly. 2025-08-31T03:14:26,390 Instead, use pypa/build, pypa/installer or other 2025-08-31T03:14:26,390 standards-based tools. 2025-08-31T03:14:26,391 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-08-31T03:14:26,392 or your builds will no longer be supported. 2025-08-31T03:14:26,393 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-08-31T03:14:26,394 ******************************************************************************** 2025-08-31T03:14:26,395 !! 2025-08-31T03:14:26,395 self.initialize_options() 2025-08-31T03:14:26,417 installing to build/bdist.linux-armv7l/wheel 2025-08-31T03:14:26,417 running install 2025-08-31T03:14:26,442 running install_lib 2025-08-31T03:14:26,536 creating build/bdist.linux-armv7l/wheel 2025-08-31T03:14:26,558 creating build/bdist.linux-armv7l/wheel/indra 2025-08-31T03:14:26,560 creating build/bdist.linux-armv7l/wheel/indra/util 2025-08-31T03:14:26,561 copying build/lib/indra/util/_require_python3.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,564 copying build/lib/indra/util/get_version.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,566 copying build/lib/indra/util/perm_cache.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,568 copying build/lib/indra/util/plot_formatting.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,571 copying build/lib/indra/util/statement_presentation.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,591 copying build/lib/indra/util/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,594 copying build/lib/indra/util/nested_dict.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,598 copying build/lib/indra/util/multiprocessing_traceback.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,601 copying build/lib/indra/util/aws.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,605 copying build/lib/indra/util/repickle_stmts.py -> build/bdist.linux-armv7l/wheel/./indra/util 2025-08-31T03:14:26,609 creating build/bdist.linux-armv7l/wheel/indra/statements 2025-08-31T03:14:26,611 copying build/lib/indra/statements/statements.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,616 copying build/lib/indra/statements/concept.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,619 copying build/lib/indra/statements/io.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,622 copying build/lib/indra/statements/util.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,624 copying build/lib/indra/statements/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,626 copying build/lib/indra/statements/delta.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,629 copying build/lib/indra/statements/validate.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,632 copying build/lib/indra/statements/resources.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,634 copying build/lib/indra/statements/agent.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,638 copying build/lib/indra/statements/context.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,640 copying build/lib/indra/statements/evidence.py -> build/bdist.linux-armv7l/wheel/./indra/statements 2025-08-31T03:14:26,643 creating build/bdist.linux-armv7l/wheel/indra/tools 2025-08-31T03:14:26,645 copying build/lib/indra/tools/hypothesis_annotator.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,647 copying build/lib/indra/tools/fix_invalidities.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,650 copying build/lib/indra/tools/expand_families.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,652 copying build/lib/indra/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,654 copying build/lib/indra/tools/analyze_ontology.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,657 copying build/lib/indra/tools/executable_subnetwork.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,659 creating build/bdist.linux-armv7l/wheel/indra/tools/machine 2025-08-31T03:14:26,661 copying build/lib/indra/tools/machine/default-config.yaml -> build/bdist.linux-armv7l/wheel/./indra/tools/machine 2025-08-31T03:14:26,663 copying build/lib/indra/tools/machine/cli.py -> build/bdist.linux-armv7l/wheel/./indra/tools/machine 2025-08-31T03:14:26,666 copying build/lib/indra/tools/machine/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/tools/machine 2025-08-31T03:14:26,668 copying build/lib/indra/tools/machine/__main__.py -> build/bdist.linux-armv7l/wheel/./indra/tools/machine 2025-08-31T03:14:26,670 copying build/lib/indra/tools/machine/config.py -> build/bdist.linux-armv7l/wheel/./indra/tools/machine 2025-08-31T03:14:26,672 copying build/lib/indra/tools/machine/twitter_client.py -> build/bdist.linux-armv7l/wheel/./indra/tools/machine 2025-08-31T03:14:26,674 copying build/lib/indra/tools/machine/gmail_client.py -> build/bdist.linux-armv7l/wheel/./indra/tools/machine 2025-08-31T03:14:26,677 copying build/lib/indra/tools/machine/machine.py -> build/bdist.linux-armv7l/wheel/./indra/tools/machine 2025-08-31T03:14:26,680 copying build/lib/indra/tools/assemble_corpus.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,685 copying build/lib/indra/tools/extract_grounding_map.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,687 copying build/lib/indra/tools/incremental_model.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,690 copying build/lib/indra/tools/gene_network.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,693 copying build/lib/indra/tools/mechlinker_queries.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,695 copying build/lib/indra/tools/adaptive_assembly.py -> build/bdist.linux-armv7l/wheel/./indra/tools 2025-08-31T03:14:26,698 creating build/bdist.linux-armv7l/wheel/indra/preassembler 2025-08-31T03:14:26,699 copying build/lib/indra/preassembler/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/preassembler 2025-08-31T03:14:26,702 copying build/lib/indra/preassembler/refinement.py -> build/bdist.linux-armv7l/wheel/./indra/preassembler 2025-08-31T03:14:26,705 copying build/lib/indra/preassembler/sitemapper.py -> build/bdist.linux-armv7l/wheel/./indra/preassembler 2025-08-31T03:14:26,708 copying build/lib/indra/preassembler/custom_preassembly.py -> build/bdist.linux-armv7l/wheel/./indra/preassembler 2025-08-31T03:14:26,711 creating build/bdist.linux-armv7l/wheel/indra/preassembler/grounding_mapper 2025-08-31T03:14:26,712 copying build/lib/indra/preassembler/grounding_mapper/mapper.py -> build/bdist.linux-armv7l/wheel/./indra/preassembler/grounding_mapper 2025-08-31T03:14:26,715 copying build/lib/indra/preassembler/grounding_mapper/gilda.py -> build/bdist.linux-armv7l/wheel/./indra/preassembler/grounding_mapper 2025-08-31T03:14:26,718 copying build/lib/indra/preassembler/grounding_mapper/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/preassembler/grounding_mapper 2025-08-31T03:14:26,720 copying build/lib/indra/preassembler/grounding_mapper/analysis.py -> build/bdist.linux-armv7l/wheel/./indra/preassembler/grounding_mapper 2025-08-31T03:14:26,722 copying build/lib/indra/preassembler/grounding_mapper/disambiguate.py -> build/bdist.linux-armv7l/wheel/./indra/preassembler/grounding_mapper 2025-08-31T03:14:26,726 creating build/bdist.linux-armv7l/wheel/indra/ontology 2025-08-31T03:14:26,727 creating build/bdist.linux-armv7l/wheel/indra/ontology/bio 2025-08-31T03:14:26,729 copying build/lib/indra/ontology/bio/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/ontology/bio 2025-08-31T03:14:26,731 copying build/lib/indra/ontology/bio/__main__.py -> build/bdist.linux-armv7l/wheel/./indra/ontology/bio 2025-08-31T03:14:26,733 copying build/lib/indra/ontology/bio/ontology.py -> build/bdist.linux-armv7l/wheel/./indra/ontology/bio 2025-08-31T03:14:26,736 copying build/lib/indra/ontology/bio/sqlite_ontology.py -> build/bdist.linux-armv7l/wheel/./indra/ontology/bio 2025-08-31T03:14:26,739 creating build/bdist.linux-armv7l/wheel/indra/ontology/virtual 2025-08-31T03:14:26,740 copying build/lib/indra/ontology/virtual/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/ontology/virtual 2025-08-31T03:14:26,742 copying build/lib/indra/ontology/virtual/ontology.py -> build/bdist.linux-armv7l/wheel/./indra/ontology/virtual 2025-08-31T03:14:26,744 copying build/lib/indra/ontology/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/ontology 2025-08-31T03:14:26,746 creating build/bdist.linux-armv7l/wheel/indra/ontology/app 2025-08-31T03:14:26,748 copying build/lib/indra/ontology/app/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/ontology/app 2025-08-31T03:14:26,750 copying build/lib/indra/ontology/app/app.py -> build/bdist.linux-armv7l/wheel/./indra/ontology/app 2025-08-31T03:14:26,752 copying build/lib/indra/ontology/standardize.py -> build/bdist.linux-armv7l/wheel/./indra/ontology 2025-08-31T03:14:26,754 copying build/lib/indra/ontology/ontology_graph.py -> build/bdist.linux-armv7l/wheel/./indra/ontology 2025-08-31T03:14:26,758 creating build/bdist.linux-armv7l/wheel/indra/mechlinker 2025-08-31T03:14:26,759 copying build/lib/indra/mechlinker/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/mechlinker 2025-08-31T03:14:26,762 copying build/lib/indra/__init__.py -> build/bdist.linux-armv7l/wheel/./indra 2025-08-31T03:14:26,765 creating build/bdist.linux-armv7l/wheel/indra/resources 2025-08-31T03:14:26,766 copying build/lib/indra/resources/drugbank_mappings.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:26,789 copying build/lib/indra/resources/efo.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:26,881 copying build/lib/indra/resources/README.txt -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:26,883 copying build/lib/indra/resources/chebi_to_chembl.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:26,902 copying build/lib/indra/resources/chebi.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:27,644 copying build/lib/indra/resources/lspci.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:27,672 copying build/lib/indra/resources/greek_alphabet.py -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:27,674 copying build/lib/indra/resources/source_mapping.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:27,676 copying build/lib/indra/resources/phosphatases.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:27,678 copying build/lib/indra/resources/go.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:28,928 copying build/lib/indra/resources/source_info.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:28,931 copying build/lib/indra/resources/pubmed_retractions.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:28,938 copying build/lib/indra/resources/transcription_factors.csv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:28,941 copying build/lib/indra/resources/curated_site_map.csv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:28,945 copying build/lib/indra/resources/uniprot_subcell_loc.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:28,947 copying build/lib/indra/resources/chembl_tas.csv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:28,974 copying build/lib/indra/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:28,976 copying build/lib/indra/resources/mesh_cas_mappings.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:28,992 copying build/lib/indra/resources/mondo.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,397 copying build/lib/indra/resources/ras_pathway_proteins.csv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,400 copying build/lib/indra/resources/update_resources.py -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,404 copying build/lib/indra/resources/chebi_to_pubchem.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,448 copying build/lib/indra/resources/amino_acids.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,450 copying build/lib/indra/resources/selventa_entries.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,455 copying build/lib/indra/resources/famplex_map.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,457 copying build/lib/indra/resources/statements_schema.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,460 copying build/lib/indra/resources/hgnc_uniprot_preferred.csv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,462 copying build/lib/indra/resources/default_config.ini -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,463 copying build/lib/indra/resources/index_card_schema.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,466 copying build/lib/indra/resources/ido.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,469 copying build/lib/indra/resources/mirbase.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,481 copying build/lib/indra/resources/lincs_proteins.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,503 copying build/lib/indra/resources/hms_lincs_extra.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,506 copying build/lib/indra/resources/hmdb_to_chebi.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,511 copying build/lib/indra/resources/mgi_entries.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,564 copying build/lib/indra/resources/default_belief_probs.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,566 copying build/lib/indra/resources/mesh_supp_id_label_mappings.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,915 copying build/lib/indra/resources/db_refs_map.csv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,917 copying build/lib/indra/resources/eccode.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,939 copying build/lib/indra/resources/add_grounding_resources_from_csv.py -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,943 creating build/bdist.linux-armv7l/wheel/indra/resources/grounding 2025-08-31T03:14:29,944 copying build/lib/indra/resources/grounding/gene_grounding.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/grounding 2025-08-31T03:14:29,947 copying build/lib/indra/resources/grounding/ignore.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/grounding 2025-08-31T03:14:29,948 copying build/lib/indra/resources/grounding/grounding_map.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/grounding 2025-08-31T03:14:29,964 copying build/lib/indra/resources/grounding/covid_grounding.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/grounding 2025-08-31T03:14:29,967 copying build/lib/indra/resources/grounding/misgrounding_map.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/grounding 2025-08-31T03:14:29,970 copying build/lib/indra/resources/grounding/agents.json -> build/bdist.linux-armv7l/wheel/./indra/resources/grounding 2025-08-31T03:14:29,972 copying build/lib/indra/resources/grounding/extra_gmap_files.json -> build/bdist.linux-armv7l/wheel/./indra/resources/grounding 2025-08-31T03:14:29,975 copying build/lib/indra/resources/ncit_allele_map.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,980 copying build/lib/indra/resources/cas_to_chebi.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,994 copying build/lib/indra/resources/identifiers_patterns.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:29,998 copying build/lib/indra/resources/pubchem_mesh_map.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,020 copying build/lib/indra/resources/hgnc_entries.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,114 copying build/lib/indra/resources/biomappings.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,118 copying build/lib/indra/resources/kinases.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,121 copying build/lib/indra/resources/bioregistry.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,125 copying build/lib/indra/resources/doid.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,234 copying build/lib/indra/resources/mesh_mappings.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,283 copying build/lib/indra/resources/bel_chebi_map.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,328 copying build/lib/indra/resources/hp.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,410 copying build/lib/indra/resources/mesh_id_label_mappings.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,493 copying build/lib/indra/resources/ncit_map.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,500 copying build/lib/indra/resources/lincs_small_molecules.json -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,509 copying build/lib/indra/resources/rgd_entries.tsv -> build/bdist.linux-armv7l/wheel/./indra/resources 2025-08-31T03:14:30,555 creating build/bdist.linux-armv7l/wheel/indra/resources/famplex 2025-08-31T03:14:30,557 copying build/lib/indra/resources/famplex/entities.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/famplex 2025-08-31T03:14:30,560 copying build/lib/indra/resources/famplex/gene_prefixes.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/famplex 2025-08-31T03:14:30,563 copying build/lib/indra/resources/famplex/equivalences.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/famplex 2025-08-31T03:14:30,567 copying build/lib/indra/resources/famplex/grounding_map.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/famplex 2025-08-31T03:14:30,571 copying build/lib/indra/resources/famplex/relations.csv -> build/bdist.linux-armv7l/wheel/./indra/resources/famplex 2025-08-31T03:14:30,577 copying build/lib/indra/config.py -> build/bdist.linux-armv7l/wheel/./indra 2025-08-31T03:14:30,580 creating build/bdist.linux-armv7l/wheel/indra/pipeline 2025-08-31T03:14:30,582 copying build/lib/indra/pipeline/decorators.py -> build/bdist.linux-armv7l/wheel/./indra/pipeline 2025-08-31T03:14:30,584 copying build/lib/indra/pipeline/pipeline.py -> build/bdist.linux-armv7l/wheel/./indra/pipeline 2025-08-31T03:14:30,586 copying build/lib/indra/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/pipeline 2025-08-31T03:14:30,589 creating build/bdist.linux-armv7l/wheel/indra/benchmarks 2025-08-31T03:14:30,590 copying build/lib/indra/benchmarks/benchmark_db_coverage.py -> build/bdist.linux-armv7l/wheel/./indra/benchmarks 2025-08-31T03:14:30,592 copying build/lib/indra/benchmarks/benchmark_trips.py -> build/bdist.linux-armv7l/wheel/./indra/benchmarks 2025-08-31T03:14:30,594 copying build/lib/indra/benchmarks/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/benchmarks 2025-08-31T03:14:30,597 creating build/bdist.linux-armv7l/wheel/indra/benchmarks/bioprocesses 2025-08-31T03:14:30,598 copying build/lib/indra/benchmarks/bioprocesses/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/benchmarks/bioprocesses 2025-08-31T03:14:30,600 copying build/lib/indra/benchmarks/bioprocesses/__main__.py -> build/bdist.linux-armv7l/wheel/./indra/benchmarks/bioprocesses 2025-08-31T03:14:30,603 creating build/bdist.linux-armv7l/wheel/indra/benchmarks/phosphorylations 2025-08-31T03:14:30,604 copying build/lib/indra/benchmarks/phosphorylations/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/benchmarks/phosphorylations 2025-08-31T03:14:30,608 creating build/bdist.linux-armv7l/wheel/indra/literature 2025-08-31T03:14:30,609 copying build/lib/indra/literature/pmids_oa_xml.txt -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:30,762 copying build/lib/indra/literature/pubmed_client.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:30,766 copying build/lib/indra/literature/coci_client.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:30,768 copying build/lib/indra/literature/newsapi_client.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:30,770 copying build/lib/indra/literature/pmids_oa_txt.txt -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:30,939 copying build/lib/indra/literature/crossref_client.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:30,941 copying build/lib/indra/literature/s3_client.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:30,944 copying build/lib/indra/literature/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:30,946 copying build/lib/indra/literature/biorxiv_client.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:30,948 copying build/lib/indra/literature/pmids_fulltext.txt -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:31,146 copying build/lib/indra/literature/elsevier_client.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:31,149 copying build/lib/indra/literature/pmc_client.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:31,152 copying build/lib/indra/literature/pmids_auth_xml.txt -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:31,204 copying build/lib/indra/literature/adeft_tools.py -> build/bdist.linux-armv7l/wheel/./indra/literature 2025-08-31T03:14:31,207 creating build/bdist.linux-armv7l/wheel/indra/sources 2025-08-31T03:14:31,208 copying build/lib/indra/sources/utils.py -> build/bdist.linux-armv7l/wheel/./indra/sources 2025-08-31T03:14:31,211 creating build/bdist.linux-armv7l/wheel/indra/sources/isi 2025-08-31T03:14:31,212 copying build/lib/indra/sources/isi/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/isi 2025-08-31T03:14:31,215 copying build/lib/indra/sources/isi/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/isi 2025-08-31T03:14:31,218 copying build/lib/indra/sources/isi/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/isi 2025-08-31T03:14:31,220 copying build/lib/indra/sources/isi/experiments.py -> build/bdist.linux-armv7l/wheel/./indra/sources/isi 2025-08-31T03:14:31,222 copying build/lib/indra/sources/isi/preprocessor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/isi 2025-08-31T03:14:31,225 copying build/lib/indra/sources/isi/isi_verb_to_indra_statement_type.tsv -> build/bdist.linux-armv7l/wheel/./indra/sources/isi 2025-08-31T03:14:31,227 creating build/bdist.linux-armv7l/wheel/indra/sources/sparser 2025-08-31T03:14:31,228 copying build/lib/indra/sources/sparser/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/sparser 2025-08-31T03:14:31,231 copying build/lib/indra/sources/sparser/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/sparser 2025-08-31T03:14:31,234 copying build/lib/indra/sources/sparser/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/sparser 2025-08-31T03:14:31,236 copying build/lib/indra/sources/sparser/xml_processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/sparser 2025-08-31T03:14:31,239 creating build/bdist.linux-armv7l/wheel/indra/sources/ubibrowser 2025-08-31T03:14:31,240 copying build/lib/indra/sources/ubibrowser/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/ubibrowser 2025-08-31T03:14:31,242 copying build/lib/indra/sources/ubibrowser/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/ubibrowser 2025-08-31T03:14:31,245 copying build/lib/indra/sources/ubibrowser/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/ubibrowser 2025-08-31T03:14:31,247 creating build/bdist.linux-armv7l/wheel/indra/sources/hprd 2025-08-31T03:14:31,249 copying build/lib/indra/sources/hprd/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/hprd 2025-08-31T03:14:31,251 copying build/lib/indra/sources/hprd/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/hprd 2025-08-31T03:14:31,254 copying build/lib/indra/sources/hprd/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/hprd 2025-08-31T03:14:31,257 creating build/bdist.linux-armv7l/wheel/indra/sources/semrep 2025-08-31T03:14:31,258 copying build/lib/indra/sources/semrep/Dockerfile -> build/bdist.linux-armv7l/wheel/./indra/sources/semrep 2025-08-31T03:14:31,260 copying build/lib/indra/sources/semrep/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/semrep 2025-08-31T03:14:31,262 copying build/lib/indra/sources/semrep/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/semrep 2025-08-31T03:14:31,264 copying build/lib/indra/sources/semrep/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/semrep 2025-08-31T03:14:31,266 creating build/bdist.linux-armv7l/wheel/indra/sources/dgi 2025-08-31T03:14:31,268 copying build/lib/indra/sources/dgi/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/dgi 2025-08-31T03:14:31,270 copying build/lib/indra/sources/dgi/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/dgi 2025-08-31T03:14:31,272 copying build/lib/indra/sources/dgi/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/dgi 2025-08-31T03:14:31,274 copying build/lib/indra/sources/dgi/__main__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/dgi 2025-08-31T03:14:31,277 creating build/bdist.linux-armv7l/wheel/indra/sources/geneways 2025-08-31T03:14:31,278 copying build/lib/indra/sources/geneways/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/geneways 2025-08-31T03:14:31,280 copying build/lib/indra/sources/geneways/symbols_parser.py -> build/bdist.linux-armv7l/wheel/./indra/sources/geneways 2025-08-31T03:14:31,282 copying build/lib/indra/sources/geneways/action_parser.py -> build/bdist.linux-armv7l/wheel/./indra/sources/geneways 2025-08-31T03:14:31,285 copying build/lib/indra/sources/geneways/actionmention_parser.py -> build/bdist.linux-armv7l/wheel/./indra/sources/geneways 2025-08-31T03:14:31,287 copying build/lib/indra/sources/geneways/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/geneways 2025-08-31T03:14:31,289 copying build/lib/indra/sources/geneways/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/geneways 2025-08-31T03:14:31,291 copying build/lib/indra/sources/geneways/find_full_text_sentence.py -> build/bdist.linux-armv7l/wheel/./indra/sources/geneways 2025-08-31T03:14:31,294 creating build/bdist.linux-armv7l/wheel/indra/sources/index_cards 2025-08-31T03:14:31,295 copying build/lib/indra/sources/index_cards/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/index_cards 2025-08-31T03:14:31,298 copying build/lib/indra/sources/index_cards/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/index_cards 2025-08-31T03:14:31,300 creating build/bdist.linux-armv7l/wheel/indra/sources/wormbase 2025-08-31T03:14:31,301 copying build/lib/indra/sources/wormbase/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/wormbase 2025-08-31T03:14:31,304 copying build/lib/indra/sources/wormbase/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/wormbase 2025-08-31T03:14:31,307 copying build/lib/indra/sources/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/wormbase 2025-08-31T03:14:31,309 creating build/bdist.linux-armv7l/wheel/indra/sources/indra_db_rest 2025-08-31T03:14:31,310 copying build/lib/indra/sources/indra_db_rest/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/indra_db_rest 2025-08-31T03:14:31,314 copying build/lib/indra/sources/indra_db_rest/query.py -> build/bdist.linux-armv7l/wheel/./indra/sources/indra_db_rest 2025-08-31T03:14:31,316 copying build/lib/indra/sources/indra_db_rest/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/indra_db_rest 2025-08-31T03:14:31,319 copying build/lib/indra/sources/indra_db_rest/query_results.py -> build/bdist.linux-armv7l/wheel/./indra/sources/indra_db_rest 2025-08-31T03:14:31,322 copying build/lib/indra/sources/indra_db_rest/util.py -> build/bdist.linux-armv7l/wheel/./indra/sources/indra_db_rest 2025-08-31T03:14:31,324 copying build/lib/indra/sources/indra_db_rest/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/indra_db_rest 2025-08-31T03:14:31,326 copying build/lib/indra/sources/indra_db_rest/exceptions.py -> build/bdist.linux-armv7l/wheel/./indra/sources/indra_db_rest 2025-08-31T03:14:31,329 creating build/bdist.linux-armv7l/wheel/indra/sources/phosphoelm 2025-08-31T03:14:31,330 copying build/lib/indra/sources/phosphoelm/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/phosphoelm 2025-08-31T03:14:31,333 copying build/lib/indra/sources/phosphoelm/phosphoelm_mapping.py -> build/bdist.linux-armv7l/wheel/./indra/sources/phosphoelm 2025-08-31T03:14:31,336 copying build/lib/indra/sources/phosphoelm/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/phosphoelm 2025-08-31T03:14:31,338 copying build/lib/indra/sources/phosphoelm/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/phosphoelm 2025-08-31T03:14:31,341 creating build/bdist.linux-armv7l/wheel/indra/sources/drugbank 2025-08-31T03:14:31,342 copying build/lib/indra/sources/drugbank/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/drugbank 2025-08-31T03:14:31,344 copying build/lib/indra/sources/drugbank/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/drugbank 2025-08-31T03:14:31,347 copying build/lib/indra/sources/drugbank/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/drugbank 2025-08-31T03:14:31,349 creating build/bdist.linux-armv7l/wheel/indra/sources/biopax 2025-08-31T03:14:31,351 copying build/lib/indra/sources/biopax/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/biopax 2025-08-31T03:14:31,353 copying build/lib/indra/sources/biopax/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/biopax 2025-08-31T03:14:31,357 copying build/lib/indra/sources/biopax/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/biopax 2025-08-31T03:14:31,359 copying build/lib/indra/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources 2025-08-31T03:14:31,361 creating build/bdist.linux-armv7l/wheel/indra/sources/omnipath 2025-08-31T03:14:31,362 copying build/lib/indra/sources/omnipath/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/omnipath 2025-08-31T03:14:31,365 copying build/lib/indra/sources/omnipath/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/omnipath 2025-08-31T03:14:31,367 copying build/lib/indra/sources/omnipath/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/omnipath 2025-08-31T03:14:31,369 creating build/bdist.linux-armv7l/wheel/indra/sources/trrust 2025-08-31T03:14:31,371 copying build/lib/indra/sources/trrust/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/trrust 2025-08-31T03:14:31,373 copying build/lib/indra/sources/trrust/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/trrust 2025-08-31T03:14:31,375 copying build/lib/indra/sources/trrust/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/trrust 2025-08-31T03:14:31,377 creating build/bdist.linux-armv7l/wheel/indra/sources/ndex_cx 2025-08-31T03:14:31,378 copying build/lib/indra/sources/ndex_cx/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/ndex_cx 2025-08-31T03:14:31,380 copying build/lib/indra/sources/ndex_cx/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/ndex_cx 2025-08-31T03:14:31,383 copying build/lib/indra/sources/ndex_cx/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/ndex_cx 2025-08-31T03:14:31,385 creating build/bdist.linux-armv7l/wheel/indra/sources/signor 2025-08-31T03:14:31,386 copying build/lib/indra/sources/signor/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/signor 2025-08-31T03:14:31,389 copying build/lib/indra/sources/signor/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/signor 2025-08-31T03:14:31,391 copying build/lib/indra/sources/signor/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/signor 2025-08-31T03:14:31,394 creating build/bdist.linux-armv7l/wheel/indra/sources/acsn 2025-08-31T03:14:31,395 copying build/lib/indra/sources/acsn/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/acsn 2025-08-31T03:14:31,397 copying build/lib/indra/sources/acsn/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/acsn 2025-08-31T03:14:31,399 copying build/lib/indra/sources/acsn/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/acsn 2025-08-31T03:14:31,402 creating build/bdist.linux-armv7l/wheel/indra/sources/hypothesis 2025-08-31T03:14:31,403 copying build/lib/indra/sources/hypothesis/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/hypothesis 2025-08-31T03:14:31,405 copying build/lib/indra/sources/hypothesis/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/hypothesis 2025-08-31T03:14:31,408 copying build/lib/indra/sources/hypothesis/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/hypothesis 2025-08-31T03:14:31,410 copying build/lib/indra/sources/hypothesis/annotator.py -> build/bdist.linux-armv7l/wheel/./indra/sources/hypothesis 2025-08-31T03:14:31,413 creating build/bdist.linux-armv7l/wheel/indra/sources/crog 2025-08-31T03:14:31,414 copying build/lib/indra/sources/crog/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/crog 2025-08-31T03:14:31,416 copying build/lib/indra/sources/crog/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/crog 2025-08-31T03:14:31,418 copying build/lib/indra/sources/crog/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/crog 2025-08-31T03:14:31,420 copying build/lib/indra/sources/crog/__main__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/crog 2025-08-31T03:14:31,422 creating build/bdist.linux-armv7l/wheel/indra/sources/minerva 2025-08-31T03:14:31,424 copying build/lib/indra/sources/minerva/id_mapping.py -> build/bdist.linux-armv7l/wheel/./indra/sources/minerva 2025-08-31T03:14:31,426 copying build/lib/indra/sources/minerva/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/minerva 2025-08-31T03:14:31,428 copying build/lib/indra/sources/minerva/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/minerva 2025-08-31T03:14:31,431 copying build/lib/indra/sources/minerva/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/minerva 2025-08-31T03:14:31,433 copying build/lib/indra/sources/minerva/minerva_client.py -> build/bdist.linux-armv7l/wheel/./indra/sources/minerva 2025-08-31T03:14:31,436 creating build/bdist.linux-armv7l/wheel/indra/sources/rlimsp 2025-08-31T03:14:31,437 copying build/lib/indra/sources/rlimsp/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/rlimsp 2025-08-31T03:14:31,440 copying build/lib/indra/sources/rlimsp/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/rlimsp 2025-08-31T03:14:31,444 copying build/lib/indra/sources/rlimsp/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/rlimsp 2025-08-31T03:14:31,447 creating build/bdist.linux-armv7l/wheel/indra/sources/tas 2025-08-31T03:14:31,448 copying build/lib/indra/sources/tas/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/tas 2025-08-31T03:14:31,451 copying build/lib/indra/sources/tas/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/tas 2025-08-31T03:14:31,453 copying build/lib/indra/sources/tas/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/tas 2025-08-31T03:14:31,456 creating build/bdist.linux-armv7l/wheel/indra/sources/virhostnet 2025-08-31T03:14:31,457 copying build/lib/indra/sources/virhostnet/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/virhostnet 2025-08-31T03:14:31,459 copying build/lib/indra/sources/virhostnet/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/virhostnet 2025-08-31T03:14:31,461 copying build/lib/indra/sources/virhostnet/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/virhostnet 2025-08-31T03:14:31,464 creating build/bdist.linux-armv7l/wheel/indra/sources/reach 2025-08-31T03:14:31,465 copying build/lib/indra/sources/reach/reach_rule_regexps.txt -> build/bdist.linux-armv7l/wheel/./indra/sources/reach 2025-08-31T03:14:31,468 copying build/lib/indra/sources/reach/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/reach 2025-08-31T03:14:31,471 copying build/lib/indra/sources/reach/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/reach 2025-08-31T03:14:31,475 copying build/lib/indra/sources/reach/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/reach 2025-08-31T03:14:31,478 copying build/lib/indra/sources/reach/reader.py -> build/bdist.linux-armv7l/wheel/./indra/sources/reach 2025-08-31T03:14:31,480 creating build/bdist.linux-armv7l/wheel/indra/sources/tees 2025-08-31T03:14:31,482 copying build/lib/indra/sources/tees/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/tees 2025-08-31T03:14:31,485 copying build/lib/indra/sources/tees/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/tees 2025-08-31T03:14:31,490 copying build/lib/indra/sources/tees/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/tees 2025-08-31T03:14:31,492 copying build/lib/indra/sources/tees/parse_tees.py -> build/bdist.linux-armv7l/wheel/./indra/sources/tees 2025-08-31T03:14:31,495 copying build/lib/indra/sources/biogrid.py -> build/bdist.linux-armv7l/wheel/./indra/sources 2025-08-31T03:14:31,499 creating build/bdist.linux-armv7l/wheel/indra/sources/bel 2025-08-31T03:14:31,500 copying build/lib/indra/sources/bel/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/bel 2025-08-31T03:14:31,503 copying build/lib/indra/sources/bel/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/bel 2025-08-31T03:14:31,506 copying build/lib/indra/sources/bel/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/bel 2025-08-31T03:14:31,509 creating build/bdist.linux-armv7l/wheel/indra/sources/creeds 2025-08-31T03:14:31,510 copying build/lib/indra/sources/creeds/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/creeds 2025-08-31T03:14:31,513 copying build/lib/indra/sources/creeds/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/creeds 2025-08-31T03:14:31,517 copying build/lib/indra/sources/creeds/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/creeds 2025-08-31T03:14:31,520 creating build/bdist.linux-armv7l/wheel/indra/sources/eidos 2025-08-31T03:14:31,521 copying build/lib/indra/sources/eidos/client.py -> build/bdist.linux-armv7l/wheel/./indra/sources/eidos 2025-08-31T03:14:31,523 copying build/lib/indra/sources/eidos/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/eidos 2025-08-31T03:14:31,526 copying build/lib/indra/sources/eidos/cli.py -> build/bdist.linux-armv7l/wheel/./indra/sources/eidos 2025-08-31T03:14:31,528 copying build/lib/indra/sources/eidos/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/eidos 2025-08-31T03:14:31,531 copying build/lib/indra/sources/eidos/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/eidos 2025-08-31T03:14:31,534 copying build/lib/indra/sources/eidos/bio_processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/eidos 2025-08-31T03:14:31,536 copying build/lib/indra/sources/eidos/server.py -> build/bdist.linux-armv7l/wheel/./indra/sources/eidos 2025-08-31T03:14:31,539 copying build/lib/indra/sources/eidos/reader.py -> build/bdist.linux-armv7l/wheel/./indra/sources/eidos 2025-08-31T03:14:31,542 creating build/bdist.linux-armv7l/wheel/indra/sources/ctd 2025-08-31T03:14:31,544 copying build/lib/indra/sources/ctd/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/ctd 2025-08-31T03:14:31,546 copying build/lib/indra/sources/ctd/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/ctd 2025-08-31T03:14:31,548 copying build/lib/indra/sources/ctd/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/ctd 2025-08-31T03:14:31,551 creating build/bdist.linux-armv7l/wheel/indra/sources/gnbr 2025-08-31T03:14:31,552 copying build/lib/indra/sources/gnbr/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/gnbr 2025-08-31T03:14:31,555 copying build/lib/indra/sources/gnbr/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/gnbr 2025-08-31T03:14:31,558 copying build/lib/indra/sources/gnbr/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/gnbr 2025-08-31T03:14:31,561 creating build/bdist.linux-armv7l/wheel/indra/sources/trips 2025-08-31T03:14:31,562 copying build/lib/indra/sources/trips/client.py -> build/bdist.linux-armv7l/wheel/./indra/sources/trips 2025-08-31T03:14:31,565 copying build/lib/indra/sources/trips/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/trips 2025-08-31T03:14:31,568 copying build/lib/indra/sources/trips/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/trips 2025-08-31T03:14:31,573 copying build/lib/indra/sources/trips/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/trips 2025-08-31T03:14:31,575 copying build/lib/indra/sources/trips/analyze_ekbs.py -> build/bdist.linux-armv7l/wheel/./indra/sources/trips 2025-08-31T03:14:31,577 copying build/lib/indra/sources/trips/drum_reader.py -> build/bdist.linux-armv7l/wheel/./indra/sources/trips 2025-08-31T03:14:31,580 creating build/bdist.linux-armv7l/wheel/indra/sources/biofactoid 2025-08-31T03:14:31,581 copying build/lib/indra/sources/biofactoid/api.py -> build/bdist.linux-armv7l/wheel/./indra/sources/biofactoid 2025-08-31T03:14:31,584 copying build/lib/indra/sources/biofactoid/processor.py -> build/bdist.linux-armv7l/wheel/./indra/sources/biofactoid 2025-08-31T03:14:31,587 copying build/lib/indra/sources/biofactoid/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/sources/biofactoid 2025-08-31T03:14:31,590 creating build/bdist.linux-armv7l/wheel/indra/assemblers 2025-08-31T03:14:31,591 creating build/bdist.linux-armv7l/wheel/indra/assemblers/sbgn 2025-08-31T03:14:31,593 copying build/lib/indra/assemblers/sbgn/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/sbgn 2025-08-31T03:14:31,597 copying build/lib/indra/assemblers/sbgn/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/sbgn 2025-08-31T03:14:31,603 creating build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2025-08-31T03:14:31,604 copying build/lib/indra/assemblers/pysb/bmi_wrapper.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pysb 2025-08-31T03:14:31,608 copying build/lib/indra/assemblers/pysb/export.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pysb 2025-08-31T03:14:31,612 copying build/lib/indra/assemblers/pysb/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pysb 2025-08-31T03:14:31,614 copying build/lib/indra/assemblers/pysb/sites.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pysb 2025-08-31T03:14:31,616 copying build/lib/indra/assemblers/pysb/preassembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pysb 2025-08-31T03:14:31,619 copying build/lib/indra/assemblers/pysb/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pysb 2025-08-31T03:14:31,706 copying build/lib/indra/assemblers/pysb/kappa_util.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pysb 2025-08-31T03:14:31,710 copying build/lib/indra/assemblers/pysb/common.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pysb 2025-08-31T03:14:31,713 copying build/lib/indra/assemblers/pysb/base_agents.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pysb 2025-08-31T03:14:31,718 creating build/bdist.linux-armv7l/wheel/indra/assemblers/cyjs 2025-08-31T03:14:31,720 copying build/lib/indra/assemblers/cyjs/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/cyjs 2025-08-31T03:14:31,724 copying build/lib/indra/assemblers/cyjs/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/cyjs 2025-08-31T03:14:31,729 creating build/bdist.linux-armv7l/wheel/indra/assemblers/tsv 2025-08-31T03:14:31,730 copying build/lib/indra/assemblers/tsv/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/tsv 2025-08-31T03:14:31,732 copying build/lib/indra/assemblers/tsv/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/tsv 2025-08-31T03:14:31,735 creating build/bdist.linux-armv7l/wheel/indra/assemblers/sif 2025-08-31T03:14:31,737 copying build/lib/indra/assemblers/sif/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/sif 2025-08-31T03:14:31,739 copying build/lib/indra/assemblers/sif/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/sif 2025-08-31T03:14:31,758 creating build/bdist.linux-armv7l/wheel/indra/assemblers/indranet 2025-08-31T03:14:31,760 copying build/lib/indra/assemblers/indranet/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/indranet 2025-08-31T03:14:31,763 copying build/lib/indra/assemblers/indranet/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/indranet 2025-08-31T03:14:31,804 copying build/lib/indra/assemblers/indranet/net.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/indranet 2025-08-31T03:14:31,810 copying build/lib/indra/assemblers/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers 2025-08-31T03:14:31,814 creating build/bdist.linux-armv7l/wheel/indra/assemblers/graph 2025-08-31T03:14:31,816 copying build/lib/indra/assemblers/graph/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/graph 2025-08-31T03:14:31,819 copying build/lib/indra/assemblers/graph/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/graph 2025-08-31T03:14:31,822 creating build/bdist.linux-armv7l/wheel/indra/assemblers/pybel 2025-08-31T03:14:31,824 copying build/lib/indra/assemblers/pybel/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pybel 2025-08-31T03:14:31,826 copying build/lib/indra/assemblers/pybel/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/pybel 2025-08-31T03:14:31,830 creating build/bdist.linux-armv7l/wheel/indra/assemblers/html 2025-08-31T03:14:31,832 copying build/lib/indra/assemblers/html/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/html 2025-08-31T03:14:31,834 copying build/lib/indra/assemblers/html/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/html 2025-08-31T03:14:31,841 creating build/bdist.linux-armv7l/wheel/indra/assemblers/html/templates 2025-08-31T03:14:31,845 creating build/bdist.linux-armv7l/wheel/indra/assemblers/html/templates/indra 2025-08-31T03:14:31,848 copying build/lib/indra/assemblers/html/templates/indra/statements_view.html -> build/bdist.linux-armv7l/wheel/./indra/assemblers/html/templates/indra 2025-08-31T03:14:31,855 copying build/lib/indra/assemblers/html/templates/indra/template.html -> build/bdist.linux-armv7l/wheel/./indra/assemblers/html/templates/indra 2025-08-31T03:14:31,864 creating build/bdist.linux-armv7l/wheel/indra/assemblers/cx 2025-08-31T03:14:31,868 copying build/lib/indra/assemblers/cx/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/cx 2025-08-31T03:14:31,875 copying build/lib/indra/assemblers/cx/hub_layout.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/cx 2025-08-31T03:14:31,882 copying build/lib/indra/assemblers/cx/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/cx 2025-08-31T03:14:31,889 creating build/bdist.linux-armv7l/wheel/indra/assemblers/index_card 2025-08-31T03:14:31,891 copying build/lib/indra/assemblers/index_card/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/index_card 2025-08-31T03:14:31,894 copying build/lib/indra/assemblers/index_card/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/index_card 2025-08-31T03:14:31,899 creating build/bdist.linux-armv7l/wheel/indra/assemblers/kami 2025-08-31T03:14:31,901 copying build/lib/indra/assemblers/kami/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/kami 2025-08-31T03:14:31,904 copying build/lib/indra/assemblers/kami/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/kami 2025-08-31T03:14:31,910 creating build/bdist.linux-armv7l/wheel/indra/assemblers/english 2025-08-31T03:14:32,124 copying build/lib/indra/assemblers/english/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/english 2025-08-31T03:14:32,127 copying build/lib/indra/assemblers/english/assembler.py -> build/bdist.linux-armv7l/wheel/./indra/assemblers/english 2025-08-31T03:14:32,134 creating build/bdist.linux-armv7l/wheel/indra/databases 2025-08-31T03:14:32,135 copying build/lib/indra/databases/lincs_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,138 copying build/lib/indra/databases/mgi_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,141 copying build/lib/indra/databases/mirbase_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,144 copying build/lib/indra/databases/mesh_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,147 copying build/lib/indra/databases/pubchem_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,150 copying build/lib/indra/databases/mondo_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,152 copying build/lib/indra/databases/ec_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,154 copying build/lib/indra/databases/ido_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,156 copying build/lib/indra/databases/rgd_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,158 copying build/lib/indra/databases/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,160 copying build/lib/indra/databases/go_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,162 copying build/lib/indra/databases/taxonomy_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,164 copying build/lib/indra/databases/owl_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,167 copying build/lib/indra/databases/doid_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,169 copying build/lib/indra/databases/biolookup_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,170 copying build/lib/indra/databases/chembl_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,173 copying build/lib/indra/databases/bioregistry_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,176 copying build/lib/indra/databases/obo_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,178 copying build/lib/indra/databases/chebi_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,181 copying build/lib/indra/databases/ndex_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,183 copying build/lib/indra/databases/context_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,185 copying build/lib/indra/databases/efo_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,187 copying build/lib/indra/databases/hp_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,189 copying build/lib/indra/databases/identifiers.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,191 copying build/lib/indra/databases/uniprot_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,193 copying build/lib/indra/databases/drugbank_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,195 copying build/lib/indra/databases/hgnc_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,198 copying build/lib/indra/databases/cbio_client.py -> build/bdist.linux-armv7l/wheel/./indra/databases 2025-08-31T03:14:32,201 creating build/bdist.linux-armv7l/wheel/indra/explanation 2025-08-31T03:14:32,203 copying build/lib/indra/explanation/reporting.py -> build/bdist.linux-armv7l/wheel/./indra/explanation 2025-08-31T03:14:32,206 copying build/lib/indra/explanation/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/explanation 2025-08-31T03:14:32,208 creating build/bdist.linux-armv7l/wheel/indra/explanation/model_checker 2025-08-31T03:14:32,209 copying build/lib/indra/explanation/model_checker/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/explanation/model_checker 2025-08-31T03:14:32,212 copying build/lib/indra/explanation/model_checker/signed_graph.py -> build/bdist.linux-armv7l/wheel/./indra/explanation/model_checker 2025-08-31T03:14:32,214 copying build/lib/indra/explanation/model_checker/model_checker.py -> build/bdist.linux-armv7l/wheel/./indra/explanation/model_checker 2025-08-31T03:14:32,217 copying build/lib/indra/explanation/model_checker/unsigned_graph.py -> build/bdist.linux-armv7l/wheel/./indra/explanation/model_checker 2025-08-31T03:14:32,220 copying build/lib/indra/explanation/model_checker/pybel.py -> build/bdist.linux-armv7l/wheel/./indra/explanation/model_checker 2025-08-31T03:14:32,223 copying build/lib/indra/explanation/model_checker/pysb.py -> build/bdist.linux-armv7l/wheel/./indra/explanation/model_checker 2025-08-31T03:14:32,227 creating build/bdist.linux-armv7l/wheel/indra/explanation/pathfinding 2025-08-31T03:14:32,229 copying build/lib/indra/explanation/pathfinding/util.py -> build/bdist.linux-armv7l/wheel/./indra/explanation/pathfinding 2025-08-31T03:14:32,231 copying build/lib/indra/explanation/pathfinding/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/explanation/pathfinding 2025-08-31T03:14:32,233 copying build/lib/indra/explanation/pathfinding/pathfinding.py -> build/bdist.linux-armv7l/wheel/./indra/explanation/pathfinding 2025-08-31T03:14:32,238 creating build/bdist.linux-armv7l/wheel/indra/tests 2025-08-31T03:14:32,240 copying build/lib/indra/tests/test_graph_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,242 copying build/lib/indra/tests/test_eidos.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,244 copying build/lib/indra/tests/test_delta.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,246 copying build/lib/indra/tests/test_uniprot_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,249 copying build/lib/indra/tests/test_custom_preassembly.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,251 copying build/lib/indra/tests/test_fix_invalidities.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,253 copying build/lib/indra/tests/test_tees.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,255 creating build/bdist.linux-armv7l/wheel/indra/tests/test_obo_clients 2025-08-31T03:14:32,256 copying build/lib/indra/tests/test_obo_clients/test_efo_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests/test_obo_clients 2025-08-31T03:14:32,259 copying build/lib/indra/tests/test_obo_clients/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/tests/test_obo_clients 2025-08-31T03:14:32,260 copying build/lib/indra/tests/test_obo_clients/test_hp_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests/test_obo_clients 2025-08-31T03:14:32,262 copying build/lib/indra/tests/test_obo_clients/test_ec_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests/test_obo_clients 2025-08-31T03:14:32,264 copying build/lib/indra/tests/test_obo_clients/test_mondo_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests/test_obo_clients 2025-08-31T03:14:32,266 copying build/lib/indra/tests/test_obo_clients/test_ido_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests/test_obo_clients 2025-08-31T03:14:32,268 copying build/lib/indra/tests/test_obo_clients/test_doid_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests/test_obo_clients 2025-08-31T03:14:32,270 copying build/lib/indra/tests/test_context.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,272 copying build/lib/indra/tests/test_chebi_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,274 copying build/lib/indra/tests/test_html_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,277 copying build/lib/indra/tests/test_trrust.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,279 copying build/lib/indra/tests/test_virhostnet.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,281 copying build/lib/indra/tests/test_pybel_api.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,284 copying build/lib/indra/tests/test_identifiers.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,287 copying build/lib/indra/tests/test_biofactoid.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,288 copying build/lib/indra/tests/test_bmi_wrapper.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,290 copying build/lib/indra/tests/test_incremental_model.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,292 copying build/lib/indra/tests/test_sparser.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,295 copying build/lib/indra/tests/make_mock_ontology.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,297 copying build/lib/indra/tests/test_belief_sklearn.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,300 copying build/lib/indra/tests/test_ontology.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,303 copying build/lib/indra/tests/test_rasmachine.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,305 copying build/lib/indra/tests/test_benchmarks.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,307 copying build/lib/indra/tests/test_preassembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,312 copying build/lib/indra/tests/test_sbgn_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,314 copying build/lib/indra/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,316 copying build/lib/indra/tests/test_phosphoelm_processor.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,318 copying build/lib/indra/tests/test_model_checker.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,535 copying build/lib/indra/tests/test_elsevier_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,539 copying build/lib/indra/tests/test_literature.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,542 copying build/lib/indra/tests/util.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,545 copying build/lib/indra/tests/test_mirbase_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,548 copying build/lib/indra/tests/test_cyjs_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,552 copying build/lib/indra/tests/test_pubchem_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,555 copying build/lib/indra/tests/test_cbio_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,558 copying build/lib/indra/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,559 copying build/lib/indra/tests/test_wormbase_processor.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,561 copying build/lib/indra/tests/test_biogrid.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,571 copying build/lib/indra/tests/test_json_schema.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,574 copying build/lib/indra/tests/test_pubmed_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,577 copying build/lib/indra/tests/test_statement_validate.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,579 copying build/lib/indra/tests/test_statements.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,585 copying build/lib/indra/tests/test_pipeline.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,588 copying build/lib/indra/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,590 copying build/lib/indra/tests/test_coci_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,592 copying build/lib/indra/tests/test_bioregistry.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,594 copying build/lib/indra/tests/test_gnbr.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,597 copying build/lib/indra/tests/test_hprd.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,599 copying build/lib/indra/tests/test_go_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,601 copying build/lib/indra/tests/test_pybel_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,604 copying build/lib/indra/tests/test_groundingmapper.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,607 copying build/lib/indra/tests/test_rlimsp.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,608 copying build/lib/indra/tests/test_chembl_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,610 copying build/lib/indra/tests/test_medscan.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,613 copying build/lib/indra/tests/test_db_rest.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,616 copying build/lib/indra/tests/test_sif_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,618 copying build/lib/indra/tests/test_pmc_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,620 copying build/lib/indra/tests/test_s3_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,623 copying build/lib/indra/tests/test_signor.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,626 copying build/lib/indra/tests/test_lincs_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,629 copying build/lib/indra/tests/test_expand_families.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,632 copying build/lib/indra/tests/test_adaptive_assembly.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,634 copying build/lib/indra/tests/test_kappa_util.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,636 copying build/lib/indra/tests/test_trips_ekbs.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,639 copying build/lib/indra/tests/test_assemble_corpus.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,643 copying build/lib/indra/tests/test_acsn.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,645 copying build/lib/indra/tests/test_cx_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,647 copying build/lib/indra/tests/test_hgnc_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,649 copying build/lib/indra/tests/test_mesh.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,652 copying build/lib/indra/tests/test_grounding_resources.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,654 copying build/lib/indra/tests/test_biopax.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,656 copying build/lib/indra/tests/test_index_card_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,658 copying build/lib/indra/tests/test_biolookup_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,660 copying build/lib/indra/tests/test_hypothesis.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,662 copying build/lib/indra/tests/test_reach.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,666 copying build/lib/indra/tests/test_ndex_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,668 copying build/lib/indra/tests/test_pysb_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,671 copying build/lib/indra/tests/test_mgi_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,673 copying build/lib/indra/tests/test_sparser_xml.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,675 copying build/lib/indra/tests/test_geneways.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,677 copying build/lib/indra/tests/test_pathfinding.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,680 copying build/lib/indra/tests/test_crossref_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,682 copying build/lib/indra/tests/test_ndex_cx_processor.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,684 copying build/lib/indra/tests/test_belief_engine.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,687 copying build/lib/indra/tests/test_isi.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,689 copying build/lib/indra/tests/test_tsv_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,691 copying build/lib/indra/tests/test_statements_serialization.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,693 copying build/lib/indra/tests/test_ctd.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,695 copying build/lib/indra/tests/test_minerva.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,697 copying build/lib/indra/tests/test_drugbank.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,699 copying build/lib/indra/tests/test_sitemapper.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,702 copying build/lib/indra/tests/test_english_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,705 copying build/lib/indra/tests/test_rgd_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,707 copying build/lib/indra/tests/test_tas.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,709 copying build/lib/indra/tests/test_adeft_tools.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,711 copying build/lib/indra/tests/test_trips.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,713 copying build/lib/indra/tests/test_taxonomy_client.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,715 copying build/lib/indra/tests/test_rest_api.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,718 copying build/lib/indra/tests/test_indranet_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,721 copying build/lib/indra/tests/test_kami_assembler.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,724 copying build/lib/indra/tests/test_mechlinker.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,726 copying build/lib/indra/tests/test_docs_code.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,729 copying build/lib/indra/tests/test_omnipath.py -> build/bdist.linux-armv7l/wheel/./indra/tests 2025-08-31T03:14:32,732 copying build/lib/indra/java_vm.py -> build/bdist.linux-armv7l/wheel/./indra 2025-08-31T03:14:32,734 creating build/bdist.linux-armv7l/wheel/indra/belief 2025-08-31T03:14:32,736 copying build/lib/indra/belief/skl.py -> build/bdist.linux-armv7l/wheel/./indra/belief 2025-08-31T03:14:32,739 copying build/lib/indra/belief/__init__.py -> build/bdist.linux-armv7l/wheel/./indra/belief 2025-08-31T03:14:32,742 running install_egg_info 2025-08-31T03:14:32,800 Copying indra.egg-info to build/bdist.linux-armv7l/wheel/./indra-1.24.0-py3.11.egg-info 2025-08-31T03:14:32,814 running install_scripts 2025-08-31T03:14:32,829 creating build/bdist.linux-armv7l/wheel/indra-1.24.0.dist-info/WHEEL 2025-08-31T03:14:32,831 creating '/tmp/pip-wheel-ymhvy0fr/indra-1.24.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-08-31T03:14:32,834 adding 'indra/__init__.py' 2025-08-31T03:14:32,836 adding 'indra/config.py' 2025-08-31T03:14:32,837 adding 'indra/java_vm.py' 2025-08-31T03:14:32,839 adding 'indra/assemblers/__init__.py' 2025-08-31T03:14:32,841 adding 'indra/assemblers/cx/__init__.py' 2025-08-31T03:14:32,845 adding 'indra/assemblers/cx/assembler.py' 2025-08-31T03:14:32,847 adding 'indra/assemblers/cx/hub_layout.py' 2025-08-31T03:14:32,849 adding 'indra/assemblers/cyjs/__init__.py' 2025-08-31T03:14:32,852 adding 'indra/assemblers/cyjs/assembler.py' 2025-08-31T03:14:32,854 adding 'indra/assemblers/english/__init__.py' 2025-08-31T03:14:32,857 adding 'indra/assemblers/english/assembler.py' 2025-08-31T03:14:32,859 adding 'indra/assemblers/graph/__init__.py' 2025-08-31T03:14:32,861 adding 'indra/assemblers/graph/assembler.py' 2025-08-31T03:14:32,863 adding 'indra/assemblers/html/__init__.py' 2025-08-31T03:14:32,869 adding 'indra/assemblers/html/assembler.py' 2025-08-31T03:14:32,872 adding 'indra/assemblers/html/templates/indra/statements_view.html' 2025-08-31T03:14:32,874 adding 'indra/assemblers/html/templates/indra/template.html' 2025-08-31T03:14:32,876 adding 'indra/assemblers/index_card/__init__.py' 2025-08-31T03:14:32,878 adding 'indra/assemblers/index_card/assembler.py' 2025-08-31T03:14:32,880 adding 'indra/assemblers/indranet/__init__.py' 2025-08-31T03:14:32,883 adding 'indra/assemblers/indranet/assembler.py' 2025-08-31T03:14:32,885 adding 'indra/assemblers/indranet/net.py' 2025-08-31T03:14:32,887 adding 'indra/assemblers/kami/__init__.py' 2025-08-31T03:14:32,889 adding 'indra/assemblers/kami/assembler.py' 2025-08-31T03:14:32,891 adding 'indra/assemblers/pybel/__init__.py' 2025-08-31T03:14:32,894 adding 'indra/assemblers/pybel/assembler.py' 2025-08-31T03:14:32,896 adding 'indra/assemblers/pysb/__init__.py' 2025-08-31T03:14:32,907 adding 'indra/assemblers/pysb/assembler.py' 2025-08-31T03:14:32,909 adding 'indra/assemblers/pysb/base_agents.py' 2025-08-31T03:14:32,911 adding 'indra/assemblers/pysb/bmi_wrapper.py' 2025-08-31T03:14:32,913 adding 'indra/assemblers/pysb/common.py' 2025-08-31T03:14:32,914 adding 'indra/assemblers/pysb/export.py' 2025-08-31T03:14:32,916 adding 'indra/assemblers/pysb/kappa_util.py' 2025-08-31T03:14:32,918 adding 'indra/assemblers/pysb/preassembler.py' 2025-08-31T03:14:32,919 adding 'indra/assemblers/pysb/sites.py' 2025-08-31T03:14:32,921 adding 'indra/assemblers/sbgn/__init__.py' 2025-08-31T03:14:32,923 adding 'indra/assemblers/sbgn/assembler.py' 2025-08-31T03:14:32,925 adding 'indra/assemblers/sif/__init__.py' 2025-08-31T03:14:32,926 adding 'indra/assemblers/sif/assembler.py' 2025-08-31T03:14:32,928 adding 'indra/assemblers/tsv/__init__.py' 2025-08-31T03:14:32,929 adding 'indra/assemblers/tsv/assembler.py' 2025-08-31T03:14:32,934 adding 'indra/belief/__init__.py' 2025-08-31T03:14:32,938 adding 'indra/belief/skl.py' 2025-08-31T03:14:32,940 adding 'indra/benchmarks/__init__.py' 2025-08-31T03:14:32,941 adding 'indra/benchmarks/benchmark_db_coverage.py' 2025-08-31T03:14:32,942 adding 'indra/benchmarks/benchmark_trips.py' 2025-08-31T03:14:32,944 adding 'indra/benchmarks/bioprocesses/__init__.py' 2025-08-31T03:14:32,946 adding 'indra/benchmarks/bioprocesses/__main__.py' 2025-08-31T03:14:32,948 adding 'indra/benchmarks/phosphorylations/__init__.py' 2025-08-31T03:14:32,950 adding 'indra/databases/__init__.py' 2025-08-31T03:14:32,951 adding 'indra/databases/biolookup_client.py' 2025-08-31T03:14:32,952 adding 'indra/databases/bioregistry_client.py' 2025-08-31T03:14:32,955 adding 'indra/databases/cbio_client.py' 2025-08-31T03:14:32,957 adding 'indra/databases/chebi_client.py' 2025-08-31T03:14:32,959 adding 'indra/databases/chembl_client.py' 2025-08-31T03:14:32,960 adding 'indra/databases/context_client.py' 2025-08-31T03:14:32,961 adding 'indra/databases/doid_client.py' 2025-08-31T03:14:32,963 adding 'indra/databases/drugbank_client.py' 2025-08-31T03:14:32,964 adding 'indra/databases/ec_client.py' 2025-08-31T03:14:32,965 adding 'indra/databases/efo_client.py' 2025-08-31T03:14:32,967 adding 'indra/databases/go_client.py' 2025-08-31T03:14:32,969 adding 'indra/databases/hgnc_client.py' 2025-08-31T03:14:32,970 adding 'indra/databases/hp_client.py' 2025-08-31T03:14:32,972 adding 'indra/databases/identifiers.py' 2025-08-31T03:14:32,974 adding 'indra/databases/ido_client.py' 2025-08-31T03:14:32,975 adding 'indra/databases/lincs_client.py' 2025-08-31T03:14:32,978 adding 'indra/databases/mesh_client.py' 2025-08-31T03:14:32,979 adding 'indra/databases/mgi_client.py' 2025-08-31T03:14:32,981 adding 'indra/databases/mirbase_client.py' 2025-08-31T03:14:32,982 adding 'indra/databases/mondo_client.py' 2025-08-31T03:14:32,984 adding 'indra/databases/ndex_client.py' 2025-08-31T03:14:32,986 adding 'indra/databases/obo_client.py' 2025-08-31T03:14:32,988 adding 'indra/databases/owl_client.py' 2025-08-31T03:14:32,990 adding 'indra/databases/pubchem_client.py' 2025-08-31T03:14:32,991 adding 'indra/databases/rgd_client.py' 2025-08-31T03:14:32,992 adding 'indra/databases/taxonomy_client.py' 2025-08-31T03:14:32,994 adding 'indra/databases/uniprot_client.py' 2025-08-31T03:14:32,995 adding 'indra/explanation/__init__.py' 2025-08-31T03:14:32,997 adding 'indra/explanation/reporting.py' 2025-08-31T03:14:32,999 adding 'indra/explanation/model_checker/__init__.py' 2025-08-31T03:14:33,003 adding 'indra/explanation/model_checker/model_checker.py' 2025-08-31T03:14:33,005 adding 'indra/explanation/model_checker/pybel.py' 2025-08-31T03:14:33,011 adding 'indra/explanation/model_checker/pysb.py' 2025-08-31T03:14:33,013 adding 'indra/explanation/model_checker/signed_graph.py' 2025-08-31T03:14:33,015 adding 'indra/explanation/model_checker/unsigned_graph.py' 2025-08-31T03:14:33,016 adding 'indra/explanation/pathfinding/__init__.py' 2025-08-31T03:14:33,021 adding 'indra/explanation/pathfinding/pathfinding.py' 2025-08-31T03:14:33,023 adding 'indra/explanation/pathfinding/util.py' 2025-08-31T03:14:33,026 adding 'indra/literature/__init__.py' 2025-08-31T03:14:33,027 adding 'indra/literature/adeft_tools.py' 2025-08-31T03:14:33,029 adding 'indra/literature/biorxiv_client.py' 2025-08-31T03:14:33,030 adding 'indra/literature/coci_client.py' 2025-08-31T03:14:33,032 adding 'indra/literature/crossref_client.py' 2025-08-31T03:14:33,035 adding 'indra/literature/elsevier_client.py' 2025-08-31T03:14:33,036 adding 'indra/literature/newsapi_client.py' 2025-08-31T03:14:33,039 adding 'indra/literature/pmc_client.py' 2025-08-31T03:14:34,237 adding 'indra/literature/pmids_auth_xml.txt' 2025-08-31T03:14:39,227 adding 'indra/literature/pmids_fulltext.txt' 2025-08-31T03:14:43,162 adding 'indra/literature/pmids_oa_txt.txt' 2025-08-31T03:14:47,075 adding 'indra/literature/pmids_oa_xml.txt' 2025-08-31T03:14:47,147 adding 'indra/literature/pubmed_client.py' 2025-08-31T03:14:47,150 adding 'indra/literature/s3_client.py' 2025-08-31T03:14:47,154 adding 'indra/mechlinker/__init__.py' 2025-08-31T03:14:47,156 adding 'indra/ontology/__init__.py' 2025-08-31T03:14:47,158 adding 'indra/ontology/ontology_graph.py' 2025-08-31T03:14:47,159 adding 'indra/ontology/standardize.py' 2025-08-31T03:14:47,161 adding 'indra/ontology/app/__init__.py' 2025-08-31T03:14:47,162 adding 'indra/ontology/app/app.py' 2025-08-31T03:14:47,164 adding 'indra/ontology/bio/__init__.py' 2025-08-31T03:14:47,165 adding 'indra/ontology/bio/__main__.py' 2025-08-31T03:14:47,168 adding 'indra/ontology/bio/ontology.py' 2025-08-31T03:14:47,170 adding 'indra/ontology/bio/sqlite_ontology.py' 2025-08-31T03:14:47,171 adding 'indra/ontology/virtual/__init__.py' 2025-08-31T03:14:47,173 adding 'indra/ontology/virtual/ontology.py' 2025-08-31T03:14:47,174 adding 'indra/pipeline/__init__.py' 2025-08-31T03:14:47,176 adding 'indra/pipeline/decorators.py' 2025-08-31T03:14:47,178 adding 'indra/pipeline/pipeline.py' 2025-08-31T03:14:47,183 adding 'indra/preassembler/__init__.py' 2025-08-31T03:14:47,185 adding 'indra/preassembler/custom_preassembly.py' 2025-08-31T03:14:47,188 adding 'indra/preassembler/refinement.py' 2025-08-31T03:14:47,190 adding 'indra/preassembler/sitemapper.py' 2025-08-31T03:14:47,192 adding 'indra/preassembler/grounding_mapper/__init__.py' 2025-08-31T03:14:47,194 adding 'indra/preassembler/grounding_mapper/analysis.py' 2025-08-31T03:14:47,196 adding 'indra/preassembler/grounding_mapper/disambiguate.py' 2025-08-31T03:14:47,198 adding 'indra/preassembler/grounding_mapper/gilda.py' 2025-08-31T03:14:47,201 adding 'indra/preassembler/grounding_mapper/mapper.py' 2025-08-31T03:14:47,204 adding 'indra/resources/README.txt' 2025-08-31T03:14:47,205 adding 'indra/resources/__init__.py' 2025-08-31T03:14:47,207 adding 'indra/resources/add_grounding_resources_from_csv.py' 2025-08-31T03:14:47,209 adding 'indra/resources/amino_acids.tsv' 2025-08-31T03:14:47,500 adding 'indra/resources/bel_chebi_map.tsv' 2025-08-31T03:14:47,520 adding 'indra/resources/biomappings.tsv' 2025-08-31T03:14:47,529 adding 'indra/resources/bioregistry.json' 2025-08-31T03:14:47,680 adding 'indra/resources/cas_to_chebi.tsv' 2025-08-31T03:14:49,704 adding 'indra/resources/chebi.json' 2025-08-31T03:14:50,174 adding 'indra/resources/chebi_to_chembl.tsv' 2025-08-31T03:14:50,866 adding 'indra/resources/chebi_to_pubchem.tsv' 2025-08-31T03:14:51,071 adding 'indra/resources/chembl_tas.csv' 2025-08-31T03:14:51,082 adding 'indra/resources/curated_site_map.csv' 2025-08-31T03:14:51,083 adding 'indra/resources/db_refs_map.csv' 2025-08-31T03:14:51,084 adding 'indra/resources/default_belief_probs.json' 2025-08-31T03:14:51,085 adding 'indra/resources/default_config.ini' 2025-08-31T03:14:51,344 adding 'indra/resources/doid.json' 2025-08-31T03:14:51,504 adding 'indra/resources/drugbank_mappings.tsv' 2025-08-31T03:14:51,596 adding 'indra/resources/eccode.json' 2025-08-31T03:14:51,904 adding 'indra/resources/efo.json' 2025-08-31T03:14:51,946 adding 'indra/resources/famplex_map.tsv' 2025-08-31T03:14:52,911 adding 'indra/resources/go.json' 2025-08-31T03:14:53,009 adding 'indra/resources/greek_alphabet.py' 2025-08-31T03:14:53,687 adding 'indra/resources/hgnc_entries.tsv' 2025-08-31T03:14:53,729 adding 'indra/resources/hgnc_uniprot_preferred.csv' 2025-08-31T03:14:53,754 adding 'indra/resources/hmdb_to_chebi.tsv' 2025-08-31T03:14:53,760 adding 'indra/resources/hms_lincs_extra.tsv' 2025-08-31T03:14:54,053 adding 'indra/resources/hp.json' 2025-08-31T03:14:54,090 adding 'indra/resources/identifiers_patterns.json' 2025-08-31T03:14:54,093 adding 'indra/resources/ido.json' 2025-08-31T03:14:54,095 adding 'indra/resources/index_card_schema.json' 2025-08-31T03:14:54,098 adding 'indra/resources/kinases.tsv' 2025-08-31T03:14:54,139 adding 'indra/resources/lincs_proteins.json' 2025-08-31T03:14:54,180 adding 'indra/resources/lincs_small_molecules.json' 2025-08-31T03:14:54,353 adding 'indra/resources/lspci.tsv' 2025-08-31T03:14:54,564 adding 'indra/resources/mesh_cas_mappings.tsv' 2025-08-31T03:14:55,216 adding 'indra/resources/mesh_id_label_mappings.tsv' 2025-08-31T03:14:55,448 adding 'indra/resources/mesh_mappings.tsv' 2025-08-31T03:14:58,945 adding 'indra/resources/mesh_supp_id_label_mappings.tsv' 2025-08-31T03:14:59,673 adding 'indra/resources/mgi_entries.tsv' 2025-08-31T03:14:59,748 adding 'indra/resources/mirbase.tsv' 2025-08-31T03:15:00,596 adding 'indra/resources/mondo.json' 2025-08-31T03:15:00,701 adding 'indra/resources/ncit_allele_map.tsv' 2025-08-31T03:15:00,784 adding 'indra/resources/ncit_map.tsv' 2025-08-31T03:15:00,788 adding 'indra/resources/phosphatases.tsv' 2025-08-31T03:15:01,171 adding 'indra/resources/pubchem_mesh_map.tsv' 2025-08-31T03:15:01,230 adding 'indra/resources/pubmed_retractions.tsv' 2025-08-31T03:15:01,235 adding 'indra/resources/ras_pathway_proteins.csv' 2025-08-31T03:15:01,662 adding 'indra/resources/rgd_entries.tsv' 2025-08-31T03:15:01,732 adding 'indra/resources/selventa_entries.tsv' 2025-08-31T03:15:01,736 adding 'indra/resources/source_info.json' 2025-08-31T03:15:01,737 adding 'indra/resources/source_mapping.json' 2025-08-31T03:15:01,741 adding 'indra/resources/statements_schema.json' 2025-08-31T03:15:01,748 adding 'indra/resources/transcription_factors.csv' 2025-08-31T03:15:01,750 adding 'indra/resources/uniprot_subcell_loc.tsv' 2025-08-31T03:15:01,756 adding 'indra/resources/update_resources.py' 2025-08-31T03:15:01,759 adding 'indra/resources/famplex/entities.csv' 2025-08-31T03:15:01,766 adding 'indra/resources/famplex/equivalences.csv' 2025-08-31T03:15:01,768 adding 'indra/resources/famplex/gene_prefixes.csv' 2025-08-31T03:15:01,781 adding 'indra/resources/famplex/grounding_map.csv' 2025-08-31T03:15:01,793 adding 'indra/resources/famplex/relations.csv' 2025-08-31T03:15:01,796 adding 'indra/resources/grounding/agents.json' 2025-08-31T03:15:01,798 adding 'indra/resources/grounding/covid_grounding.csv' 2025-08-31T03:15:01,799 adding 'indra/resources/grounding/extra_gmap_files.json' 2025-08-31T03:15:01,801 adding 'indra/resources/grounding/gene_grounding.csv' 2025-08-31T03:15:01,814 adding 'indra/resources/grounding/grounding_map.csv' 2025-08-31T03:15:01,816 adding 'indra/resources/grounding/ignore.csv' 2025-08-31T03:15:01,818 adding 'indra/resources/grounding/misgrounding_map.csv' 2025-08-31T03:15:01,820 adding 'indra/sources/__init__.py' 2025-08-31T03:15:01,822 adding 'indra/sources/biogrid.py' 2025-08-31T03:15:01,824 adding 'indra/sources/utils.py' 2025-08-31T03:15:01,826 adding 'indra/sources/acsn/__init__.py' 2025-08-31T03:15:01,827 adding 'indra/sources/acsn/api.py' 2025-08-31T03:15:01,828 adding 'indra/sources/acsn/processor.py' 2025-08-31T03:15:01,830 adding 'indra/sources/bel/__init__.py' 2025-08-31T03:15:01,832 adding 'indra/sources/bel/api.py' 2025-08-31T03:15:01,837 adding 'indra/sources/bel/processor.py' 2025-08-31T03:15:01,839 adding 'indra/sources/biofactoid/__init__.py' 2025-08-31T03:15:01,840 adding 'indra/sources/biofactoid/api.py' 2025-08-31T03:15:01,842 adding 'indra/sources/biofactoid/processor.py' 2025-08-31T03:15:01,844 adding 'indra/sources/biopax/__init__.py' 2025-08-31T03:15:01,845 adding 'indra/sources/biopax/api.py' 2025-08-31T03:15:01,851 adding 'indra/sources/biopax/processor.py' 2025-08-31T03:15:01,853 adding 'indra/sources/creeds/__init__.py' 2025-08-31T03:15:01,854 adding 'indra/sources/creeds/api.py' 2025-08-31T03:15:01,856 adding 'indra/sources/creeds/processor.py' 2025-08-31T03:15:01,858 adding 'indra/sources/crog/__init__.py' 2025-08-31T03:15:01,859 adding 'indra/sources/crog/__main__.py' 2025-08-31T03:15:01,860 adding 'indra/sources/crog/api.py' 2025-08-31T03:15:01,861 adding 'indra/sources/crog/processor.py' 2025-08-31T03:15:01,863 adding 'indra/sources/ctd/__init__.py' 2025-08-31T03:15:01,865 adding 'indra/sources/ctd/api.py' 2025-08-31T03:15:01,866 adding 'indra/sources/ctd/processor.py' 2025-08-31T03:15:01,868 adding 'indra/sources/dgi/__init__.py' 2025-08-31T03:15:01,869 adding 'indra/sources/dgi/__main__.py' 2025-08-31T03:15:01,870 adding 'indra/sources/dgi/api.py' 2025-08-31T03:15:01,872 adding 'indra/sources/dgi/processor.py' 2025-08-31T03:15:01,874 adding 'indra/sources/drugbank/__init__.py' 2025-08-31T03:15:01,875 adding 'indra/sources/drugbank/api.py' 2025-08-31T03:15:01,877 adding 'indra/sources/drugbank/processor.py' 2025-08-31T03:15:01,879 adding 'indra/sources/eidos/__init__.py' 2025-08-31T03:15:01,880 adding 'indra/sources/eidos/api.py' 2025-08-31T03:15:01,882 adding 'indra/sources/eidos/bio_processor.py' 2025-08-31T03:15:01,883 adding 'indra/sources/eidos/cli.py' 2025-08-31T03:15:01,884 adding 'indra/sources/eidos/client.py' 2025-08-31T03:15:01,887 adding 'indra/sources/eidos/processor.py' 2025-08-31T03:15:01,888 adding 'indra/sources/eidos/reader.py' 2025-08-31T03:15:01,890 adding 'indra/sources/eidos/server.py' 2025-08-31T03:15:01,891 adding 'indra/sources/geneways/__init__.py' 2025-08-31T03:15:01,893 adding 'indra/sources/geneways/action_parser.py' 2025-08-31T03:15:01,895 adding 'indra/sources/geneways/actionmention_parser.py' 2025-08-31T03:15:01,896 adding 'indra/sources/geneways/api.py' 2025-08-31T03:15:01,898 adding 'indra/sources/geneways/find_full_text_sentence.py' 2025-08-31T03:15:01,900 adding 'indra/sources/geneways/processor.py' 2025-08-31T03:15:01,901 adding 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2025-08-31T03:15:01,931 adding 'indra/sources/indra_db_rest/exceptions.py' 2025-08-31T03:15:01,934 adding 'indra/sources/indra_db_rest/processor.py' 2025-08-31T03:15:01,937 adding 'indra/sources/indra_db_rest/query.py' 2025-08-31T03:15:01,939 adding 'indra/sources/indra_db_rest/query_results.py' 2025-08-31T03:15:01,941 adding 'indra/sources/indra_db_rest/util.py' 2025-08-31T03:15:01,943 adding 'indra/sources/isi/__init__.py' 2025-08-31T03:15:01,945 adding 'indra/sources/isi/api.py' 2025-08-31T03:15:01,946 adding 'indra/sources/isi/experiments.py' 2025-08-31T03:15:01,947 adding 'indra/sources/isi/isi_verb_to_indra_statement_type.tsv' 2025-08-31T03:15:01,949 adding 'indra/sources/isi/preprocessor.py' 2025-08-31T03:15:01,951 adding 'indra/sources/isi/processor.py' 2025-08-31T03:15:01,953 adding 'indra/sources/minerva/__init__.py' 2025-08-31T03:15:01,954 adding 'indra/sources/minerva/api.py' 2025-08-31T03:15:01,955 adding 'indra/sources/minerva/id_mapping.py' 2025-08-31T03:15:01,957 adding 'indra/sources/minerva/minerva_client.py' 2025-08-31T03:15:01,958 adding 'indra/sources/minerva/processor.py' 2025-08-31T03:15:01,960 adding 'indra/sources/ndex_cx/__init__.py' 2025-08-31T03:15:01,961 adding 'indra/sources/ndex_cx/api.py' 2025-08-31T03:15:01,963 adding 'indra/sources/ndex_cx/processor.py' 2025-08-31T03:15:01,965 adding 'indra/sources/omnipath/__init__.py' 2025-08-31T03:15:01,966 adding 'indra/sources/omnipath/api.py' 2025-08-31T03:15:01,968 adding 'indra/sources/omnipath/processor.py' 2025-08-31T03:15:01,969 adding 'indra/sources/phosphoelm/__init__.py' 2025-08-31T03:15:01,971 adding 'indra/sources/phosphoelm/api.py' 2025-08-31T03:15:01,972 adding 'indra/sources/phosphoelm/phosphoelm_mapping.py' 2025-08-31T03:15:01,974 adding 'indra/sources/phosphoelm/processor.py' 2025-08-31T03:15:01,976 adding 'indra/sources/reach/__init__.py' 2025-08-31T03:15:01,979 adding 'indra/sources/reach/api.py' 2025-08-31T03:15:01,984 adding 'indra/sources/reach/processor.py' 2025-08-31T03:15:01,986 adding 'indra/sources/reach/reach_rule_regexps.txt' 2025-08-31T03:15:01,987 adding 'indra/sources/reach/reader.py' 2025-08-31T03:15:01,989 adding 'indra/sources/rlimsp/__init__.py' 2025-08-31T03:15:01,990 adding 'indra/sources/rlimsp/api.py' 2025-08-31T03:15:01,992 adding 'indra/sources/rlimsp/processor.py' 2025-08-31T03:15:01,994 adding 'indra/sources/semrep/Dockerfile' 2025-08-31T03:15:01,996 adding 'indra/sources/semrep/__init__.py' 2025-08-31T03:15:01,997 adding 'indra/sources/semrep/api.py' 2025-08-31T03:15:01,998 adding 'indra/sources/semrep/processor.py' 2025-08-31T03:15:02,000 adding 'indra/sources/signor/__init__.py' 2025-08-31T03:15:02,001 adding 'indra/sources/signor/api.py' 2025-08-31T03:15:02,005 adding 'indra/sources/signor/processor.py' 2025-08-31T03:15:02,006 adding 'indra/sources/sparser/__init__.py' 2025-08-31T03:15:02,008 adding 'indra/sources/sparser/api.py' 2025-08-31T03:15:02,011 adding 'indra/sources/sparser/processor.py' 2025-08-31T03:15:02,013 adding 'indra/sources/sparser/xml_processor.py' 2025-08-31T03:15:02,014 adding 'indra/sources/tas/__init__.py' 2025-08-31T03:15:02,016 adding 'indra/sources/tas/api.py' 2025-08-31T03:15:02,018 adding 'indra/sources/tas/processor.py' 2025-08-31T03:15:02,020 adding 'indra/sources/tees/__init__.py' 2025-08-31T03:15:02,022 adding 'indra/sources/tees/api.py' 2025-08-31T03:15:02,024 adding 'indra/sources/tees/parse_tees.py' 2025-08-31T03:15:02,027 adding 'indra/sources/tees/processor.py' 2025-08-31T03:15:02,030 adding 'indra/sources/trips/__init__.py' 2025-08-31T03:15:02,032 adding 'indra/sources/trips/analyze_ekbs.py' 2025-08-31T03:15:02,034 adding 'indra/sources/trips/api.py' 2025-08-31T03:15:02,035 adding 'indra/sources/trips/client.py' 2025-08-31T03:15:02,037 adding 'indra/sources/trips/drum_reader.py' 2025-08-31T03:15:02,048 adding 'indra/sources/trips/processor.py' 2025-08-31T03:15:02,050 adding 'indra/sources/trrust/__init__.py' 2025-08-31T03:15:02,052 adding 'indra/sources/trrust/api.py' 2025-08-31T03:15:02,053 adding 'indra/sources/trrust/processor.py' 2025-08-31T03:15:02,055 adding 'indra/sources/ubibrowser/__init__.py' 2025-08-31T03:15:02,056 adding 'indra/sources/ubibrowser/api.py' 2025-08-31T03:15:02,058 adding 'indra/sources/ubibrowser/processor.py' 2025-08-31T03:15:02,060 adding 'indra/sources/virhostnet/__init__.py' 2025-08-31T03:15:02,062 adding 'indra/sources/virhostnet/api.py' 2025-08-31T03:15:02,063 adding 'indra/sources/virhostnet/processor.py' 2025-08-31T03:15:02,065 adding 'indra/sources/wormbase/__init__.py' 2025-08-31T03:15:02,067 adding 'indra/sources/wormbase/api.py' 2025-08-31T03:15:02,070 adding 'indra/sources/wormbase/processor.py' 2025-08-31T03:15:02,072 adding 'indra/statements/__init__.py' 2025-08-31T03:15:02,075 adding 'indra/statements/agent.py' 2025-08-31T03:15:02,077 adding 'indra/statements/concept.py' 2025-08-31T03:15:02,079 adding 'indra/statements/context.py' 2025-08-31T03:15:02,081 adding 'indra/statements/delta.py' 2025-08-31T03:15:02,083 adding 'indra/statements/evidence.py' 2025-08-31T03:15:02,086 adding 'indra/statements/io.py' 2025-08-31T03:15:02,087 adding 'indra/statements/resources.py' 2025-08-31T03:15:02,098 adding 'indra/statements/statements.py' 2025-08-31T03:15:02,100 adding 'indra/statements/util.py' 2025-08-31T03:15:02,102 adding 'indra/statements/validate.py' 2025-08-31T03:15:02,106 adding 'indra/tests/__init__.py' 2025-08-31T03:15:02,107 adding 'indra/tests/conftest.py' 2025-08-31T03:15:02,108 adding 'indra/tests/make_mock_ontology.py' 2025-08-31T03:15:02,325 adding 'indra/tests/test_acsn.py' 2025-08-31T03:15:02,328 adding 'indra/tests/test_adaptive_assembly.py' 2025-08-31T03:15:02,330 adding 'indra/tests/test_adeft_tools.py' 2025-08-31T03:15:02,337 adding 'indra/tests/test_assemble_corpus.py' 2025-08-31T03:15:02,340 adding 'indra/tests/test_belief_engine.py' 2025-08-31T03:15:02,343 adding 'indra/tests/test_belief_sklearn.py' 2025-08-31T03:15:02,345 adding 'indra/tests/test_benchmarks.py' 2025-08-31T03:15:02,347 adding 'indra/tests/test_biofactoid.py' 2025-08-31T03:15:02,349 adding 'indra/tests/test_biogrid.py' 2025-08-31T03:15:02,350 adding 'indra/tests/test_biolookup_client.py' 2025-08-31T03:15:02,352 adding 'indra/tests/test_biopax.py' 2025-08-31T03:15:02,354 adding 'indra/tests/test_bioregistry.py' 2025-08-31T03:15:02,355 adding 'indra/tests/test_bmi_wrapper.py' 2025-08-31T03:15:02,357 adding 'indra/tests/test_cbio_client.py' 2025-08-31T03:15:02,358 adding 'indra/tests/test_chebi_client.py' 2025-08-31T03:15:02,359 adding 'indra/tests/test_chembl_client.py' 2025-08-31T03:15:02,361 adding 'indra/tests/test_coci_client.py' 2025-08-31T03:15:02,362 adding 'indra/tests/test_context.py' 2025-08-31T03:15:02,363 adding 'indra/tests/test_crossref_client.py' 2025-08-31T03:15:02,365 adding 'indra/tests/test_ctd.py' 2025-08-31T03:15:02,366 adding 'indra/tests/test_custom_preassembly.py' 2025-08-31T03:15:02,367 adding 'indra/tests/test_cx_assembler.py' 2025-08-31T03:15:02,369 adding 'indra/tests/test_cyjs_assembler.py' 2025-08-31T03:15:02,371 adding 'indra/tests/test_db_rest.py' 2025-08-31T03:15:02,373 adding 'indra/tests/test_delta.py' 2025-08-31T03:15:02,374 adding 'indra/tests/test_docs_code.py' 2025-08-31T03:15:02,376 adding 'indra/tests/test_drugbank.py' 2025-08-31T03:15:02,377 adding 'indra/tests/test_eidos.py' 2025-08-31T03:15:02,379 adding 'indra/tests/test_elsevier_client.py' 2025-08-31T03:15:02,381 adding 'indra/tests/test_english_assembler.py' 2025-08-31T03:15:02,382 adding 'indra/tests/test_expand_families.py' 2025-08-31T03:15:02,384 adding 'indra/tests/test_fix_invalidities.py' 2025-08-31T03:15:02,385 adding 'indra/tests/test_geneways.py' 2025-08-31T03:15:02,387 adding 'indra/tests/test_gnbr.py' 2025-08-31T03:15:02,388 adding 'indra/tests/test_go_client.py' 2025-08-31T03:15:02,390 adding 'indra/tests/test_graph_assembler.py' 2025-08-31T03:15:02,391 adding 'indra/tests/test_grounding_resources.py' 2025-08-31T03:15:02,394 adding 'indra/tests/test_groundingmapper.py' 2025-08-31T03:15:02,396 adding 'indra/tests/test_hgnc_client.py' 2025-08-31T03:15:02,397 adding 'indra/tests/test_hprd.py' 2025-08-31T03:15:02,401 adding 'indra/tests/test_html_assembler.py' 2025-08-31T03:15:02,402 adding 'indra/tests/test_hypothesis.py' 2025-08-31T03:15:02,404 adding 'indra/tests/test_identifiers.py' 2025-08-31T03:15:02,406 adding 'indra/tests/test_incremental_model.py' 2025-08-31T03:15:02,407 adding 'indra/tests/test_index_card_assembler.py' 2025-08-31T03:15:02,409 adding 'indra/tests/test_indranet_assembler.py' 2025-08-31T03:15:02,410 adding 'indra/tests/test_isi.py' 2025-08-31T03:15:02,412 adding 'indra/tests/test_json_schema.py' 2025-08-31T03:15:02,414 adding 'indra/tests/test_kami_assembler.py' 2025-08-31T03:15:02,415 adding 'indra/tests/test_kappa_util.py' 2025-08-31T03:15:02,416 adding 'indra/tests/test_lincs_client.py' 2025-08-31T03:15:02,418 adding 'indra/tests/test_literature.py' 2025-08-31T03:15:02,419 adding 'indra/tests/test_mechlinker.py' 2025-08-31T03:15:02,421 adding 'indra/tests/test_medscan.py' 2025-08-31T03:15:02,423 adding 'indra/tests/test_mesh.py' 2025-08-31T03:15:02,424 adding 'indra/tests/test_mgi_client.py' 2025-08-31T03:15:02,425 adding 'indra/tests/test_minerva.py' 2025-08-31T03:15:02,426 adding 'indra/tests/test_mirbase_client.py' 2025-08-31T03:15:02,434 adding 'indra/tests/test_model_checker.py' 2025-08-31T03:15:02,436 adding 'indra/tests/test_ndex_client.py' 2025-08-31T03:15:02,437 adding 'indra/tests/test_ndex_cx_processor.py' 2025-08-31T03:15:02,439 adding 'indra/tests/test_omnipath.py' 2025-08-31T03:15:02,441 adding 'indra/tests/test_ontology.py' 2025-08-31T03:15:02,443 adding 'indra/tests/test_pathfinding.py' 2025-08-31T03:15:02,445 adding 'indra/tests/test_phosphoelm_processor.py' 2025-08-31T03:15:02,447 adding 'indra/tests/test_pipeline.py' 2025-08-31T03:15:02,448 adding 'indra/tests/test_pmc_client.py' 2025-08-31T03:15:02,453 adding 'indra/tests/test_preassembler.py' 2025-08-31T03:15:02,454 adding 'indra/tests/test_pubchem_client.py' 2025-08-31T03:15:02,456 adding 'indra/tests/test_pubmed_client.py' 2025-08-31T03:15:02,459 adding 'indra/tests/test_pybel_api.py' 2025-08-31T03:15:02,462 adding 'indra/tests/test_pybel_assembler.py' 2025-08-31T03:15:02,466 adding 'indra/tests/test_pysb_assembler.py' 2025-08-31T03:15:02,468 adding 'indra/tests/test_rasmachine.py' 2025-08-31T03:15:02,470 adding 'indra/tests/test_reach.py' 2025-08-31T03:15:02,474 adding 'indra/tests/test_rest_api.py' 2025-08-31T03:15:02,476 adding 'indra/tests/test_rgd_client.py' 2025-08-31T03:15:02,477 adding 'indra/tests/test_rlimsp.py' 2025-08-31T03:15:02,478 adding 'indra/tests/test_s3_client.py' 2025-08-31T03:15:02,480 adding 'indra/tests/test_sbgn_assembler.py' 2025-08-31T03:15:02,481 adding 'indra/tests/test_sif_assembler.py' 2025-08-31T03:15:02,484 adding 'indra/tests/test_signor.py' 2025-08-31T03:15:02,486 adding 'indra/tests/test_sitemapper.py' 2025-08-31T03:15:02,487 adding 'indra/tests/test_sparser.py' 2025-08-31T03:15:02,489 adding 'indra/tests/test_sparser_xml.py' 2025-08-31T03:15:02,490 adding 'indra/tests/test_statement_validate.py' 2025-08-31T03:15:02,496 adding 'indra/tests/test_statements.py' 2025-08-31T03:15:02,499 adding 'indra/tests/test_statements_serialization.py' 2025-08-31T03:15:02,500 adding 'indra/tests/test_tas.py' 2025-08-31T03:15:02,501 adding 'indra/tests/test_taxonomy_client.py' 2025-08-31T03:15:02,503 adding 'indra/tests/test_tees.py' 2025-08-31T03:15:02,504 adding 'indra/tests/test_trips.py' 2025-08-31T03:15:02,507 adding 'indra/tests/test_trips_ekbs.py' 2025-08-31T03:15:02,508 adding 'indra/tests/test_trrust.py' 2025-08-31T03:15:02,509 adding 'indra/tests/test_tsv_assembler.py' 2025-08-31T03:15:02,511 adding 'indra/tests/test_uniprot_client.py' 2025-08-31T03:15:02,512 adding 'indra/tests/test_util.py' 2025-08-31T03:15:02,514 adding 'indra/tests/test_virhostnet.py' 2025-08-31T03:15:02,515 adding 'indra/tests/test_wormbase_processor.py' 2025-08-31T03:15:02,516 adding 'indra/tests/util.py' 2025-08-31T03:15:02,518 adding 'indra/tests/test_obo_clients/__init__.py' 2025-08-31T03:15:02,520 adding 'indra/tests/test_obo_clients/test_doid_client.py' 2025-08-31T03:15:02,521 adding 'indra/tests/test_obo_clients/test_ec_client.py' 2025-08-31T03:15:02,522 adding 'indra/tests/test_obo_clients/test_efo_client.py' 2025-08-31T03:15:02,523 adding 'indra/tests/test_obo_clients/test_hp_client.py' 2025-08-31T03:15:02,525 adding 'indra/tests/test_obo_clients/test_ido_client.py' 2025-08-31T03:15:02,526 adding 'indra/tests/test_obo_clients/test_mondo_client.py' 2025-08-31T03:15:02,528 adding 'indra/tools/__init__.py' 2025-08-31T03:15:02,529 adding 'indra/tools/adaptive_assembly.py' 2025-08-31T03:15:02,531 adding 'indra/tools/analyze_ontology.py' 2025-08-31T03:15:02,541 adding 'indra/tools/assemble_corpus.py' 2025-08-31T03:15:02,542 adding 'indra/tools/executable_subnetwork.py' 2025-08-31T03:15:02,544 adding 'indra/tools/expand_families.py' 2025-08-31T03:15:02,545 adding 'indra/tools/extract_grounding_map.py' 2025-08-31T03:15:02,547 adding 'indra/tools/fix_invalidities.py' 2025-08-31T03:15:02,549 adding 'indra/tools/gene_network.py' 2025-08-31T03:15:02,550 adding 'indra/tools/hypothesis_annotator.py' 2025-08-31T03:15:02,552 adding 'indra/tools/incremental_model.py' 2025-08-31T03:15:02,554 adding 'indra/tools/mechlinker_queries.py' 2025-08-31T03:15:02,555 adding 'indra/tools/machine/__init__.py' 2025-08-31T03:15:02,557 adding 'indra/tools/machine/__main__.py' 2025-08-31T03:15:02,558 adding 'indra/tools/machine/cli.py' 2025-08-31T03:15:02,559 adding 'indra/tools/machine/config.py' 2025-08-31T03:15:02,560 adding 'indra/tools/machine/default-config.yaml' 2025-08-31T03:15:02,562 adding 'indra/tools/machine/gmail_client.py' 2025-08-31T03:15:02,565 adding 'indra/tools/machine/machine.py' 2025-08-31T03:15:02,566 adding 'indra/tools/machine/twitter_client.py' 2025-08-31T03:15:02,568 adding 'indra/util/__init__.py' 2025-08-31T03:15:02,570 adding 'indra/util/_require_python3.py' 2025-08-31T03:15:02,572 adding 'indra/util/aws.py' 2025-08-31T03:15:02,574 adding 'indra/util/get_version.py' 2025-08-31T03:15:02,575 adding 'indra/util/multiprocessing_traceback.py' 2025-08-31T03:15:02,577 adding 'indra/util/nested_dict.py' 2025-08-31T03:15:02,578 adding 'indra/util/perm_cache.py' 2025-08-31T03:15:02,579 adding 'indra/util/plot_formatting.py' 2025-08-31T03:15:02,580 adding 'indra/util/repickle_stmts.py' 2025-08-31T03:15:02,587 adding 'indra/util/statement_presentation.py' 2025-08-31T03:15:02,589 adding 'indra-1.24.0.dist-info/licenses/LICENSE' 2025-08-31T03:15:02,593 adding 'indra-1.24.0.dist-info/METADATA' 2025-08-31T03:15:02,595 adding 'indra-1.24.0.dist-info/WHEEL' 2025-08-31T03:15:02,595 adding 'indra-1.24.0.dist-info/entry_points.txt' 2025-08-31T03:15:02,596 adding 'indra-1.24.0.dist-info/top_level.txt' 2025-08-31T03:15:02,605 adding 'indra-1.24.0.dist-info/RECORD' 2025-08-31T03:15:03,016 removing build/bdist.linux-armv7l/wheel 2025-08-31T03:15:03,352 Building wheel for indra (setup.py): finished with status 'done' 2025-08-31T03:15:04,338 Created wheel for indra: filename=indra-1.24.0-py3-none-any.whl size=44016289 sha256=04f5731924041809f512199dfaa23b312ed1990a4bf6ba80e297cea33c620561 2025-08-31T03:15:04,339 Stored in directory: /tmp/pip-ephem-wheel-cache-fwo_r7i4/wheels/e4/93/41/0708b7eb4ab7ead536cad2cfe0e7509eba8e27b2ae6b2a7ef6 2025-08-31T03:15:04,389 Successfully built indra 2025-08-31T03:15:05,963 Removed build tracker: '/tmp/pip-build-tracker-wzlg57s2'