2025-08-31T04:11:11,803 Created temporary directory: /tmp/pip-build-tracker-kctmtbwh 2025-08-31T04:11:11,804 Initialized build tracking at /tmp/pip-build-tracker-kctmtbwh 2025-08-31T04:11:11,805 Created build tracker: /tmp/pip-build-tracker-kctmtbwh 2025-08-31T04:11:11,805 Entered build tracker: /tmp/pip-build-tracker-kctmtbwh 2025-08-31T04:11:11,806 Created temporary directory: /tmp/pip-wheel-_9bzpnnt 2025-08-31T04:11:11,812 Created temporary directory: /tmp/pip-ephem-wheel-cache-kgia5ydi 2025-08-31T04:11:11,860 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-08-31T04:11:11,863 2 location(s) to search for versions of biobb-adapters: 2025-08-31T04:11:11,863 * https://pypi.org/simple/biobb-adapters/ 2025-08-31T04:11:11,863 * https://www.piwheels.org/simple/biobb-adapters/ 2025-08-31T04:11:11,864 Fetching project page and analyzing links: https://pypi.org/simple/biobb-adapters/ 2025-08-31T04:11:11,864 Getting page https://pypi.org/simple/biobb-adapters/ 2025-08-31T04:11:11,866 Found index url https://pypi.org/simple/ 2025-08-31T04:11:12,086 Fetched page https://pypi.org/simple/biobb-adapters/ as application/vnd.pypi.simple.v1+json 2025-08-31T04:11:12,090 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/6e/48/fa9f1781406343cda29442d0ad67f8fa113f3661c8a62ae599a225e559d6/biobb_adapters-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,091 Found link https://files.pythonhosted.org/packages/ea/47/5763ae5620f550174e112f8231676887f996c7c7bdacb854a46860abf447/biobb_adapters-0.0.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.0.1 2025-08-31T04:11:12,092 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/0f/61/dc32b2bcfb9b1d1c8d79dc96d32671a901cd83acd1b6184772cdef43c920/biobb_adapters-0.1.2-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,092 Found link https://files.pythonhosted.org/packages/3e/05/6809d3f7ea93db6f0bceb198539299a5e33e6315b666d04e6e57568e7f11/biobb_adapters-0.1.2.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.2 2025-08-31T04:11:12,093 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/d8/34/06237256a2caa148311d8093a3f71206668f61b7cd20799b8ecf6563cbce/biobb_adapters-0.1.3-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,094 Found link https://files.pythonhosted.org/packages/cf/8d/f1da413a4007f55934dff4375e5d87d0b0f8fb7d84c1062157948f4392c9/biobb_adapters-0.1.3.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.3 2025-08-31T04:11:12,095 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/10/82/a1f366057fb6d101117ace12799cda70ce00ea9c76277d2c8e08e2fafc14/biobb_adapters-0.1.4-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,095 Found link https://files.pythonhosted.org/packages/fc/71/7d6174c4c56a7b38322a5a99c1d72c4f6b1115106508a887fbbda63e30d4/biobb_adapters-0.1.4.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.4 2025-08-31T04:11:12,096 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/af/fd/491ede12a15215794041755b568998a5ff3e8c2e1e8df7b5cec044dcdc6e/biobb_adapters-3.6.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,097 Found link https://files.pythonhosted.org/packages/d4/8e/89622b96a2f6255ba0313fb1eaf264343e3c7c1c2e2bcbb0544b990d32bc/biobb_adapters-3.6.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.0 2025-08-31T04:11:12,097 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/76/dc/444595a3497f5b5e9220cfb8c683abb044a799aa63249e69fa1c8c46c51b/biobb_adapters-3.6.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,098 Found link https://files.pythonhosted.org/packages/1c/c1/1cb78ece834741799903f6eac3dd0035297ff1c7cbb75f391ec9d5edd95b/biobb_adapters-3.6.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.1 2025-08-31T04:11:12,099 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/ba/21/064ebc456bb946b0e94829c80dfd6adc302bc65cf2d4eb774a5a1da47d90/biobb_adapters-3.7.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,099 Found link https://files.pythonhosted.org/packages/8d/bd/df127a6c4c110ffd8e6cf6a5a186fb0ddd180f7fd15f3283f5588834a605/biobb_adapters-3.7.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.7.0 2025-08-31T04:11:12,100 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/48/da/7e3fc1435ec04371f16bcc6c8d39f0b4c5c74195d1847a07862f23aa5c59/biobb_adapters-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-08-31T04:11:12,101 Found link https://files.pythonhosted.org/packages/9c/cc/757e3378f55f0e6de3c20e924e551493315d7be28a5c304397faf993bab3/biobb_adapters-3.8.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.0 2025-08-31T04:11:12,101 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/cb/e7/5a1b54a0aecde3bf2fb8f891afba3f75349a0d2b0941b7984d15b06cf0e5/biobb_adapters-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-08-31T04:11:12,102 Found link https://files.pythonhosted.org/packages/50/7a/7ce78a35dfc275fa95aaa96e3f52ff9bb12ccb5d6c47697439aa4ea737ae/biobb_adapters-3.8.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.1 2025-08-31T04:11:12,102 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/8b/ae/17f6e16c46b7e6ef350f695a2b4403b28df876ec5ffb821925132737dc45/biobb_adapters-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-08-31T04:11:12,104 Link requires a different Python (3.11.2 not in: '>=3.7,<=3.10'): https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-08-31T04:11:12,105 Skipping link: 4.0.0 Requires-Python >=3.7,<=3.10: https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-08-31T04:11:12,105 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/e2/9f/7e9855633ce80e59ec2733606467433ea96f114bd5e848013f81eb3ace9e/biobb_adapters-5.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9) 2025-08-31T04:11:12,107 Found link https://files.pythonhosted.org/packages/34/f9/4f960faa0ca763adb38734777f9133c31dd5d3df72379759905f024964c1/biobb_adapters-5.1.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9), version: 5.1.0 2025-08-31T04:11:12,107 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/4d/61/3db95cd03e19560c8b66f731352f4b05e4675862e5b7bf5b63a48f5965e6/biobb_adapters-5.1.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9) 2025-08-31T04:11:12,108 Found link https://files.pythonhosted.org/packages/8e/d7/2458662f9c7829a77f10314b5ea188d9e7c320e8cb54442c718a09c3a6b1/biobb_adapters-5.1.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9), version: 5.1.1 2025-08-31T04:11:12,109 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-adapters/ 2025-08-31T04:11:12,110 Getting page https://www.piwheels.org/simple/biobb-adapters/ 2025-08-31T04:11:12,111 Found index url https://www.piwheels.org/simple/ 2025-08-31T04:11:12,279 Fetched page https://www.piwheels.org/simple/biobb-adapters/ as text/html 2025-08-31T04:11:12,283 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-4.0.0-py3-none-any.whl#sha256=cb9dd142294b4d6a6c6a16e59ad3af487d4f7907e1e521d4ee451a71dbb75811 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-08-31T04:11:12,283 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.8.1-py3-none-any.whl#sha256=7a3438d481b9100a9515c17f6a2c639a03c777ef4bfcf0cf98a0402e52e7361e (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-08-31T04:11:12,284 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.8.0-py3-none-any.whl#sha256=b292fb32ccd27073b7e6361b3aba9b76a5c482a106f56dab11448ab7f34019e2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-08-31T04:11:12,284 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.7.0-py3-none-any.whl#sha256=87c2d259b7048ea5f5b42b1af9b4ec0ebeea79a3bf75d12b74e150a6912939ec (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,285 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.1-py3-none-any.whl#sha256=8260317060e532fea600980ac833bd79b07ac5df283349b573221a8a7c732506 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,285 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.0-py3-none-any.whl#sha256=deec3d977dc1d2088be8a28197d1bd98650e1baba87d45b5d2ef7fed41fa671c (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,286 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.4-py3-none-any.whl#sha256=f26f2aaffd33d22a606ba569276dcfd04bce56a2e8ab8e382acc2646b01f3a85 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,286 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.3-py3-none-any.whl#sha256=3d9b62abc78a28b54c050954fd6ee0e3a1fed164a3d3b8d6eadadd0b25b775d2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,287 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.2-py3-none-any.whl#sha256=0acb06de199e0ac06376a0ffe5e2071445ee7a36fce431a17edc27fdf218492d (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,287 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.0.1-py3-none-any.whl#sha256=cf710e8eb6bc1256248c69baea53ce2727fc707766e31bcf25fc9b9cfe66745a (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T04:11:12,288 Skipping link: not a file: https://www.piwheels.org/simple/biobb-adapters/ 2025-08-31T04:11:12,288 Skipping link: not a file: https://pypi.org/simple/biobb-adapters/ 2025-08-31T04:11:12,308 Given no hashes to check 1 links for project 'biobb-adapters': discarding no candidates 2025-08-31T04:11:12,310 Collecting biobb-adapters==5.1.0 2025-08-31T04:11:12,312 Created temporary directory: /tmp/pip-unpack-sgnx4w77 2025-08-31T04:11:12,530 Downloading biobb_adapters-5.1.0.tar.gz (100 kB) 2025-08-31T04:11:13,437 Added biobb-adapters==5.1.0 from https://files.pythonhosted.org/packages/34/f9/4f960faa0ca763adb38734777f9133c31dd5d3df72379759905f024964c1/biobb_adapters-5.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-kctmtbwh' 2025-08-31T04:11:13,440 Running setup.py (path:/tmp/pip-wheel-_9bzpnnt/biobb-adapters_6e3ce6bb71124cedb635a235748c9b9f/setup.py) egg_info for package biobb-adapters 2025-08-31T04:11:13,440 Created temporary directory: /tmp/pip-pip-egg-info-rkl9_5yz 2025-08-31T04:11:13,441 Preparing metadata (setup.py): started 2025-08-31T04:11:13,442 Running command python setup.py egg_info 2025-08-31T04:11:14,017 Warning: 'classifiers' should be a list, got type 'tuple' 2025-08-31T04:11:14,319 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-31T04:11:14,319 !! 2025-08-31T04:11:14,320 ******************************************************************************** 2025-08-31T04:11:14,321 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-31T04:11:14,322 License :: OSI Approved :: Apache Software License 2025-08-31T04:11:14,323 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-31T04:11:14,323 ******************************************************************************** 2025-08-31T04:11:14,324 !! 2025-08-31T04:11:14,325 self._finalize_license_expression() 2025-08-31T04:11:14,348 running egg_info 2025-08-31T04:11:14,375 creating /tmp/pip-pip-egg-info-rkl9_5yz/biobb_adapters.egg-info 2025-08-31T04:11:14,376 writing /tmp/pip-pip-egg-info-rkl9_5yz/biobb_adapters.egg-info/PKG-INFO 2025-08-31T04:11:14,379 writing dependency_links to /tmp/pip-pip-egg-info-rkl9_5yz/biobb_adapters.egg-info/dependency_links.txt 2025-08-31T04:11:14,381 writing requirements to /tmp/pip-pip-egg-info-rkl9_5yz/biobb_adapters.egg-info/requires.txt 2025-08-31T04:11:14,382 writing top-level names to /tmp/pip-pip-egg-info-rkl9_5yz/biobb_adapters.egg-info/top_level.txt 2025-08-31T04:11:14,384 writing manifest file '/tmp/pip-pip-egg-info-rkl9_5yz/biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T04:11:14,519 reading manifest file '/tmp/pip-pip-egg-info-rkl9_5yz/biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T04:11:14,520 reading manifest template 'MANIFEST.in' 2025-08-31T04:11:14,621 adding license file 'LICENSE' 2025-08-31T04:11:14,640 writing manifest file '/tmp/pip-pip-egg-info-rkl9_5yz/biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T04:11:14,745 Preparing metadata (setup.py): finished with status 'done' 2025-08-31T04:11:14,749 Source in /tmp/pip-wheel-_9bzpnnt/biobb-adapters_6e3ce6bb71124cedb635a235748c9b9f has version 5.1.0, which satisfies requirement biobb-adapters==5.1.0 from https://files.pythonhosted.org/packages/34/f9/4f960faa0ca763adb38734777f9133c31dd5d3df72379759905f024964c1/biobb_adapters-5.1.0.tar.gz 2025-08-31T04:11:14,750 Removed biobb-adapters==5.1.0 from https://files.pythonhosted.org/packages/34/f9/4f960faa0ca763adb38734777f9133c31dd5d3df72379759905f024964c1/biobb_adapters-5.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-kctmtbwh' 2025-08-31T04:11:14,756 Created temporary directory: /tmp/pip-unpack-frdy913a 2025-08-31T04:11:14,757 Created temporary directory: /tmp/pip-unpack-tx1sg1j3 2025-08-31T04:11:14,757 Building wheels for collected packages: biobb-adapters 2025-08-31T04:11:14,761 Created temporary directory: /tmp/pip-wheel-knphhiz8 2025-08-31T04:11:14,762 DEPRECATION: Building 'biobb-adapters' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biobb-adapters'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-08-31T04:11:14,763 Building wheel for biobb-adapters (setup.py): started 2025-08-31T04:11:14,765 Destination directory: /tmp/pip-wheel-knphhiz8 2025-08-31T04:11:14,765 Running command python setup.py bdist_wheel 2025-08-31T04:11:15,308 Warning: 'classifiers' should be a list, got type 'tuple' 2025-08-31T04:11:15,597 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-31T04:11:15,597 !! 2025-08-31T04:11:15,598 ******************************************************************************** 2025-08-31T04:11:15,599 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-31T04:11:15,600 License :: OSI Approved :: Apache Software License 2025-08-31T04:11:15,601 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-31T04:11:15,601 ******************************************************************************** 2025-08-31T04:11:15,602 !! 2025-08-31T04:11:15,603 self._finalize_license_expression() 2025-08-31T04:11:15,603 running bdist_wheel 2025-08-31T04:11:15,731 running build 2025-08-31T04:11:15,732 running build_py 2025-08-31T04:11:15,761 creating build/lib/biobb_adapters 2025-08-31T04:11:15,763 copying biobb_adapters/__init__.py -> build/lib/biobb_adapters 2025-08-31T04:11:15,765 creating build/lib/biobb_adapters/pycompss 2025-08-31T04:11:15,766 copying biobb_adapters/pycompss/__init__.py -> build/lib/biobb_adapters/pycompss 2025-08-31T04:11:15,769 creating build/lib/biobb_adapters/pycompss/biobb_vs 2025-08-31T04:11:15,770 copying biobb_adapters/pycompss/biobb_vs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs 2025-08-31T04:11:15,772 creating build/lib/biobb_adapters/pycompss/biobb_pmx 2025-08-31T04:11:15,773 copying biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx 2025-08-31T04:11:15,775 creating build/lib/biobb_adapters/pycompss/biobb_ml 2025-08-31T04:11:15,776 copying biobb_adapters/pycompss/biobb_ml/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml 2025-08-31T04:11:15,778 creating build/lib/biobb_adapters/pycompss/biobb_cmip 2025-08-31T04:11:15,779 copying biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip 2025-08-31T04:11:15,781 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils 2025-08-31T04:11:15,782 copying biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils 2025-08-31T04:11:15,784 creating build/lib/biobb_adapters/pycompss/biobb_md 2025-08-31T04:11:15,786 copying biobb_adapters/pycompss/biobb_md/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md 2025-08-31T04:11:15,788 creating build/lib/biobb_adapters/pycompss/biobb_commons 2025-08-31T04:11:15,789 copying biobb_adapters/pycompss/biobb_commons/task_config.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2025-08-31T04:11:15,791 copying biobb_adapters/pycompss/biobb_commons/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2025-08-31T04:11:15,793 creating build/lib/biobb_adapters/pycompss/biobb_io 2025-08-31T04:11:15,794 copying biobb_adapters/pycompss/biobb_io/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io 2025-08-31T04:11:15,796 creating build/lib/biobb_adapters/pycompss/biobb_analysis 2025-08-31T04:11:15,797 copying biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis 2025-08-31T04:11:15,799 creating build/lib/biobb_adapters/pycompss/biobb_model 2025-08-31T04:11:15,800 copying biobb_adapters/pycompss/biobb_model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model 2025-08-31T04:11:15,802 creating build/lib/biobb_adapters/pycompss/biobb_chemistry 2025-08-31T04:11:15,803 copying biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry 2025-08-31T04:11:15,805 creating build/lib/biobb_adapters/pycompss/biobb_amber 2025-08-31T04:11:15,807 copying biobb_adapters/pycompss/biobb_amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber 2025-08-31T04:11:15,809 creating build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T04:11:15,810 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T04:11:15,812 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T04:11:15,814 copying biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T04:11:15,816 creating build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:15,817 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:15,819 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:15,820 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:15,822 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:15,824 copying biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:15,826 creating build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:15,827 copying biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:15,829 copying biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:15,831 copying biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:15,833 copying biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:15,835 copying biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:15,837 creating build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,839 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,841 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,843 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,845 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,847 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,849 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,850 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,852 copying biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,854 copying biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,856 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,859 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,861 copying biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:15,863 creating build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:15,864 copying biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:15,866 copying biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:15,868 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:15,870 copying biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:15,872 copying biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:15,874 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:15,876 copying biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:15,878 creating build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,879 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,881 copying biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,883 copying biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,885 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,887 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,889 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,891 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,893 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,895 copying biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:15,897 creating build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:15,898 copying biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:15,900 copying biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:15,902 copying biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:15,904 copying biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:15,907 creating build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:15,908 copying biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:15,910 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:15,912 copying biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:15,914 copying biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:15,916 copying biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:15,918 copying biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:15,920 copying biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:15,921 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:15,924 creating build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:15,925 copying biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:15,927 copying biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:15,929 copying biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:15,931 copying biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:15,933 copying biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:15,935 creating build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:15,936 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:15,938 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:15,940 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:15,942 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:15,944 creating build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:15,945 copying biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:15,947 copying biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:15,949 copying biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:15,951 copying biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:15,953 copying biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:15,955 copying biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:15,957 copying biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:15,958 copying biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:15,961 creating build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,962 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_ignore_residues.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,964 copying biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,966 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,968 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_structure.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,970 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,972 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,974 copying biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,976 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,978 copying biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,979 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_titration.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,981 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_run.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:15,984 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:15,985 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:15,987 copying biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:15,989 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:15,991 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:15,993 copying biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:15,995 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:15,997 copying biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:15,999 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,001 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,003 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,005 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,007 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,008 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,010 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,012 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,014 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,016 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,019 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,020 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,022 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,024 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,026 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,028 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,030 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,032 copying biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,034 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,036 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:16,039 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:16,040 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:16,042 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:16,044 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:16,046 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:16,048 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:16,050 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,051 copying biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,054 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,056 copying biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,058 copying biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,060 copying biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,062 copying biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,063 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,065 copying biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,068 copying biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,070 copying biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,072 copying biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:16,075 creating build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,076 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,078 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,080 copying biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,082 copying biobb_adapters/pycompss/biobb_io/api/alphafold.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,084 copying biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,085 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,087 copying biobb_adapters/pycompss/biobb_io/api/mddb.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,089 copying biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,091 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,093 copying biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,095 copying biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,097 copying biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,098 copying biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,100 copying biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,102 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,104 copying biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,106 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,108 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,110 copying biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,111 copying biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,113 copying biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:16,116 creating build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,117 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,119 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,122 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,124 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,126 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,127 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,129 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,131 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,133 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,135 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,137 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,139 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,140 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,143 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,144 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,146 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,148 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,150 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,152 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,154 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,156 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,158 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,159 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,161 copying biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,163 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:16,165 creating build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,166 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,169 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,170 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,173 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,174 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,176 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,178 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,180 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,182 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,184 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,186 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,188 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,190 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,192 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,194 copying biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,195 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,197 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:16,200 creating build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,201 copying biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,203 copying biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,205 copying biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,207 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,209 copying biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,211 copying biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,213 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,215 copying biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,217 copying biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,219 copying biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,220 copying biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,222 copying biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:16,225 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,226 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,228 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,230 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,232 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,234 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,236 copying biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,237 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,239 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,241 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:16,243 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,244 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,246 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,248 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,250 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,252 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,254 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,256 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,258 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,260 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,262 copying biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:16,264 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:16,265 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:16,267 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:16,269 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:16,271 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:16,272 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:16,275 creating build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T04:11:16,276 copying biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T04:11:16,278 copying biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T04:11:16,280 creating build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T04:11:16,281 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T04:11:16,283 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T04:11:16,285 copying biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T04:11:16,287 creating build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T04:11:16,288 copying biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T04:11:16,290 copying biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T04:11:16,292 creating build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T04:11:16,293 copying biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T04:11:16,295 copying biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T04:11:16,297 creating build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T04:11:16,298 copying biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T04:11:16,300 copying biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T04:11:16,302 copying biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T04:11:16,304 creating build/lib/biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T04:11:16,305 copying biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T04:11:16,307 copying biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T04:11:16,309 creating build/lib/biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T04:11:16,310 copying biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T04:11:16,312 copying biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T04:11:16,314 creating build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T04:11:16,315 copying biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T04:11:16,317 copying biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T04:11:16,319 copying biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T04:11:16,321 creating build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:16,322 copying biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:16,325 copying biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:16,327 copying biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:16,329 copying biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:16,330 copying biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:16,332 creating build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T04:11:16,333 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T04:11:16,335 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T04:11:16,337 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T04:11:16,339 running egg_info 2025-08-31T04:11:16,366 writing biobb_adapters.egg-info/PKG-INFO 2025-08-31T04:11:16,369 writing dependency_links to biobb_adapters.egg-info/dependency_links.txt 2025-08-31T04:11:16,371 writing requirements to biobb_adapters.egg-info/requires.txt 2025-08-31T04:11:16,372 writing top-level names to biobb_adapters.egg-info/top_level.txt 2025-08-31T04:11:16,444 reading manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T04:11:16,476 reading manifest template 'MANIFEST.in' 2025-08-31T04:11:16,571 adding license file 'LICENSE' 2025-08-31T04:11:16,597 writing manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T04:11:16,600 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_amber' is absent from the `packages` configuration. 2025-08-31T04:11:16,601 !! 2025-08-31T04:11:16,601 ******************************************************************************** 2025-08-31T04:11:16,602 ############################ 2025-08-31T04:11:16,602 # Package would be ignored # 2025-08-31T04:11:16,603 ############################ 2025-08-31T04:11:16,603 Python recognizes 'biobb_adapters.cwl.biobb_amber' as an importable package[^1], 2025-08-31T04:11:16,604 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,605 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,605 package, please make sure that 'biobb_adapters.cwl.biobb_amber' is explicitly added 2025-08-31T04:11:16,606 to the `packages` configuration field. 2025-08-31T04:11:16,607 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,608 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,609 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,610 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,611 If you don't want 'biobb_adapters.cwl.biobb_amber' to be distributed and are 2025-08-31T04:11:16,612 already explicitly excluding 'biobb_adapters.cwl.biobb_amber' via 2025-08-31T04:11:16,612 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,613 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,613 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,614 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,615 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,617 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,617 even if it does not contain any `.py` files. 2025-08-31T04:11:16,618 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,618 directory, all directories are treated like packages. 2025-08-31T04:11:16,619 ******************************************************************************** 2025-08-31T04:11:16,620 !! 2025-08-31T04:11:16,620 check.warn(importable) 2025-08-31T04:11:16,621 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_analysis' is absent from the `packages` configuration. 2025-08-31T04:11:16,621 !! 2025-08-31T04:11:16,622 ******************************************************************************** 2025-08-31T04:11:16,623 ############################ 2025-08-31T04:11:16,623 # Package would be ignored # 2025-08-31T04:11:16,624 ############################ 2025-08-31T04:11:16,624 Python recognizes 'biobb_adapters.cwl.biobb_analysis' as an importable package[^1], 2025-08-31T04:11:16,625 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,625 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,626 package, please make sure that 'biobb_adapters.cwl.biobb_analysis' is explicitly added 2025-08-31T04:11:16,626 to the `packages` configuration field. 2025-08-31T04:11:16,627 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,628 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,628 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,629 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,630 If you don't want 'biobb_adapters.cwl.biobb_analysis' to be distributed and are 2025-08-31T04:11:16,630 already explicitly excluding 'biobb_adapters.cwl.biobb_analysis' via 2025-08-31T04:11:16,631 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,632 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,633 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,634 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,635 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,636 even if it does not contain any `.py` files. 2025-08-31T04:11:16,636 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,637 directory, all directories are treated like packages. 2025-08-31T04:11:16,637 ******************************************************************************** 2025-08-31T04:11:16,638 !! 2025-08-31T04:11:16,639 check.warn(importable) 2025-08-31T04:11:16,639 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_chemistry' is absent from the `packages` configuration. 2025-08-31T04:11:16,639 !! 2025-08-31T04:11:16,640 ******************************************************************************** 2025-08-31T04:11:16,641 ############################ 2025-08-31T04:11:16,641 # Package would be ignored # 2025-08-31T04:11:16,642 ############################ 2025-08-31T04:11:16,642 Python recognizes 'biobb_adapters.cwl.biobb_chemistry' as an importable package[^1], 2025-08-31T04:11:16,643 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,644 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,644 package, please make sure that 'biobb_adapters.cwl.biobb_chemistry' is explicitly added 2025-08-31T04:11:16,645 to the `packages` configuration field. 2025-08-31T04:11:16,646 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,646 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,646 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,647 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,647 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,648 If you don't want 'biobb_adapters.cwl.biobb_chemistry' to be distributed and are 2025-08-31T04:11:16,648 already explicitly excluding 'biobb_adapters.cwl.biobb_chemistry' via 2025-08-31T04:11:16,649 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,649 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,650 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,650 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,651 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,652 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,652 even if it does not contain any `.py` files. 2025-08-31T04:11:16,653 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,653 directory, all directories are treated like packages. 2025-08-31T04:11:16,654 ******************************************************************************** 2025-08-31T04:11:16,655 !! 2025-08-31T04:11:16,655 check.warn(importable) 2025-08-31T04:11:16,655 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_cmip' is absent from the `packages` configuration. 2025-08-31T04:11:16,656 !! 2025-08-31T04:11:16,657 ******************************************************************************** 2025-08-31T04:11:16,657 ############################ 2025-08-31T04:11:16,658 # Package would be ignored # 2025-08-31T04:11:16,658 ############################ 2025-08-31T04:11:16,658 Python recognizes 'biobb_adapters.cwl.biobb_cmip' as an importable package[^1], 2025-08-31T04:11:16,659 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,660 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,660 package, please make sure that 'biobb_adapters.cwl.biobb_cmip' is explicitly added 2025-08-31T04:11:16,660 to the `packages` configuration field. 2025-08-31T04:11:16,661 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,662 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,662 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,663 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,664 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,665 If you don't want 'biobb_adapters.cwl.biobb_cmip' to be distributed and are 2025-08-31T04:11:16,665 already explicitly excluding 'biobb_adapters.cwl.biobb_cmip' via 2025-08-31T04:11:16,666 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,666 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,667 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,668 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,669 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,670 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,671 even if it does not contain any `.py` files. 2025-08-31T04:11:16,671 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,671 directory, all directories are treated like packages. 2025-08-31T04:11:16,671 ******************************************************************************** 2025-08-31T04:11:16,672 !! 2025-08-31T04:11:16,672 check.warn(importable) 2025-08-31T04:11:16,673 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_cp2k' is absent from the `packages` configuration. 2025-08-31T04:11:16,673 !! 2025-08-31T04:11:16,674 ******************************************************************************** 2025-08-31T04:11:16,674 ############################ 2025-08-31T04:11:16,675 # Package would be ignored # 2025-08-31T04:11:16,675 ############################ 2025-08-31T04:11:16,675 Python recognizes 'biobb_adapters.cwl.biobb_cp2k' as an importable package[^1], 2025-08-31T04:11:16,676 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,677 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,677 package, please make sure that 'biobb_adapters.cwl.biobb_cp2k' is explicitly added 2025-08-31T04:11:16,678 to the `packages` configuration field. 2025-08-31T04:11:16,678 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,679 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,679 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,680 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,681 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,682 If you don't want 'biobb_adapters.cwl.biobb_cp2k' to be distributed and are 2025-08-31T04:11:16,683 already explicitly excluding 'biobb_adapters.cwl.biobb_cp2k' via 2025-08-31T04:11:16,683 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,684 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,684 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,685 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,686 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,687 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,687 even if it does not contain any `.py` files. 2025-08-31T04:11:16,688 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,689 directory, all directories are treated like packages. 2025-08-31T04:11:16,689 ******************************************************************************** 2025-08-31T04:11:16,690 !! 2025-08-31T04:11:16,691 check.warn(importable) 2025-08-31T04:11:16,691 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_dna' is absent from the `packages` configuration. 2025-08-31T04:11:16,692 !! 2025-08-31T04:11:16,693 ******************************************************************************** 2025-08-31T04:11:16,693 ############################ 2025-08-31T04:11:16,694 # Package would be ignored # 2025-08-31T04:11:16,694 ############################ 2025-08-31T04:11:16,695 Python recognizes 'biobb_adapters.cwl.biobb_dna' as an importable package[^1], 2025-08-31T04:11:16,696 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,697 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,697 package, please make sure that 'biobb_adapters.cwl.biobb_dna' is explicitly added 2025-08-31T04:11:16,697 to the `packages` configuration field. 2025-08-31T04:11:16,698 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,698 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,699 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,700 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,700 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,701 If you don't want 'biobb_adapters.cwl.biobb_dna' to be distributed and are 2025-08-31T04:11:16,701 already explicitly excluding 'biobb_adapters.cwl.biobb_dna' via 2025-08-31T04:11:16,702 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,702 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,703 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,704 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,705 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,706 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,706 even if it does not contain any `.py` files. 2025-08-31T04:11:16,707 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,707 directory, all directories are treated like packages. 2025-08-31T04:11:16,708 ******************************************************************************** 2025-08-31T04:11:16,709 !! 2025-08-31T04:11:16,709 check.warn(importable) 2025-08-31T04:11:16,710 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_flexdyn' is absent from the `packages` configuration. 2025-08-31T04:11:16,711 !! 2025-08-31T04:11:16,712 ******************************************************************************** 2025-08-31T04:11:16,712 ############################ 2025-08-31T04:11:16,712 # Package would be ignored # 2025-08-31T04:11:16,713 ############################ 2025-08-31T04:11:16,714 Python recognizes 'biobb_adapters.cwl.biobb_flexdyn' as an importable package[^1], 2025-08-31T04:11:16,714 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,715 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,716 package, please make sure that 'biobb_adapters.cwl.biobb_flexdyn' is explicitly added 2025-08-31T04:11:16,716 to the `packages` configuration field. 2025-08-31T04:11:16,717 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,718 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,719 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,720 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,721 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,722 If you don't want 'biobb_adapters.cwl.biobb_flexdyn' to be distributed and are 2025-08-31T04:11:16,722 already explicitly excluding 'biobb_adapters.cwl.biobb_flexdyn' via 2025-08-31T04:11:16,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,724 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,724 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,725 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,726 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,727 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,728 even if it does not contain any `.py` files. 2025-08-31T04:11:16,728 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,728 directory, all directories are treated like packages. 2025-08-31T04:11:16,729 ******************************************************************************** 2025-08-31T04:11:16,730 !! 2025-08-31T04:11:16,730 check.warn(importable) 2025-08-31T04:11:16,731 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_flexserv' is absent from the `packages` configuration. 2025-08-31T04:11:16,731 !! 2025-08-31T04:11:16,732 ******************************************************************************** 2025-08-31T04:11:16,733 ############################ 2025-08-31T04:11:16,733 # Package would be ignored # 2025-08-31T04:11:16,734 ############################ 2025-08-31T04:11:16,734 Python recognizes 'biobb_adapters.cwl.biobb_flexserv' as an importable package[^1], 2025-08-31T04:11:16,735 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,736 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,736 package, please make sure that 'biobb_adapters.cwl.biobb_flexserv' is explicitly added 2025-08-31T04:11:16,737 to the `packages` configuration field. 2025-08-31T04:11:16,738 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,738 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,739 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,740 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,741 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,742 If you don't want 'biobb_adapters.cwl.biobb_flexserv' to be distributed and are 2025-08-31T04:11:16,742 already explicitly excluding 'biobb_adapters.cwl.biobb_flexserv' via 2025-08-31T04:11:16,743 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,743 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,744 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,745 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,746 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,747 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,748 even if it does not contain any `.py` files. 2025-08-31T04:11:16,748 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,749 directory, all directories are treated like packages. 2025-08-31T04:11:16,749 ******************************************************************************** 2025-08-31T04:11:16,751 !! 2025-08-31T04:11:16,751 check.warn(importable) 2025-08-31T04:11:16,752 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_godmd' is absent from the `packages` configuration. 2025-08-31T04:11:16,752 !! 2025-08-31T04:11:16,753 ******************************************************************************** 2025-08-31T04:11:16,754 ############################ 2025-08-31T04:11:16,754 # Package would be ignored # 2025-08-31T04:11:16,755 ############################ 2025-08-31T04:11:16,755 Python recognizes 'biobb_adapters.cwl.biobb_godmd' as an importable package[^1], 2025-08-31T04:11:16,755 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,756 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,757 package, please make sure that 'biobb_adapters.cwl.biobb_godmd' is explicitly added 2025-08-31T04:11:16,757 to the `packages` configuration field. 2025-08-31T04:11:16,758 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,759 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,760 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,761 If you don't want 'biobb_adapters.cwl.biobb_godmd' to be distributed and are 2025-08-31T04:11:16,762 already explicitly excluding 'biobb_adapters.cwl.biobb_godmd' via 2025-08-31T04:11:16,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,763 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,764 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,767 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,767 even if it does not contain any `.py` files. 2025-08-31T04:11:16,768 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,768 directory, all directories are treated like packages. 2025-08-31T04:11:16,769 ******************************************************************************** 2025-08-31T04:11:16,770 !! 2025-08-31T04:11:16,770 check.warn(importable) 2025-08-31T04:11:16,771 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_gromacs' is absent from the `packages` configuration. 2025-08-31T04:11:16,771 !! 2025-08-31T04:11:16,772 ******************************************************************************** 2025-08-31T04:11:16,773 ############################ 2025-08-31T04:11:16,773 # Package would be ignored # 2025-08-31T04:11:16,774 ############################ 2025-08-31T04:11:16,774 Python recognizes 'biobb_adapters.cwl.biobb_gromacs' as an importable package[^1], 2025-08-31T04:11:16,775 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,776 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,777 package, please make sure that 'biobb_adapters.cwl.biobb_gromacs' is explicitly added 2025-08-31T04:11:16,777 to the `packages` configuration field. 2025-08-31T04:11:16,778 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,779 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,780 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,781 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,782 If you don't want 'biobb_adapters.cwl.biobb_gromacs' to be distributed and are 2025-08-31T04:11:16,783 already explicitly excluding 'biobb_adapters.cwl.biobb_gromacs' via 2025-08-31T04:11:16,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,784 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,784 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,785 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,786 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,787 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,787 even if it does not contain any `.py` files. 2025-08-31T04:11:16,788 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,788 directory, all directories are treated like packages. 2025-08-31T04:11:16,789 ******************************************************************************** 2025-08-31T04:11:16,790 !! 2025-08-31T04:11:16,790 check.warn(importable) 2025-08-31T04:11:16,791 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_haddock' is absent from the `packages` configuration. 2025-08-31T04:11:16,791 !! 2025-08-31T04:11:16,792 ******************************************************************************** 2025-08-31T04:11:16,793 ############################ 2025-08-31T04:11:16,794 # Package would be ignored # 2025-08-31T04:11:16,794 ############################ 2025-08-31T04:11:16,795 Python recognizes 'biobb_adapters.cwl.biobb_haddock' as an importable package[^1], 2025-08-31T04:11:16,795 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,796 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,797 package, please make sure that 'biobb_adapters.cwl.biobb_haddock' is explicitly added 2025-08-31T04:11:16,797 to the `packages` configuration field. 2025-08-31T04:11:16,799 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,799 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,800 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,801 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,802 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,803 If you don't want 'biobb_adapters.cwl.biobb_haddock' to be distributed and are 2025-08-31T04:11:16,803 already explicitly excluding 'biobb_adapters.cwl.biobb_haddock' via 2025-08-31T04:11:16,804 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,804 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,805 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,806 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,807 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,808 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,809 even if it does not contain any `.py` files. 2025-08-31T04:11:16,810 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,810 directory, all directories are treated like packages. 2025-08-31T04:11:16,811 ******************************************************************************** 2025-08-31T04:11:16,811 !! 2025-08-31T04:11:16,812 check.warn(importable) 2025-08-31T04:11:16,812 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_io' is absent from the `packages` configuration. 2025-08-31T04:11:16,813 !! 2025-08-31T04:11:16,814 ******************************************************************************** 2025-08-31T04:11:16,814 ############################ 2025-08-31T04:11:16,814 # Package would be ignored # 2025-08-31T04:11:16,815 ############################ 2025-08-31T04:11:16,815 Python recognizes 'biobb_adapters.cwl.biobb_io' as an importable package[^1], 2025-08-31T04:11:16,816 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,817 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,817 package, please make sure that 'biobb_adapters.cwl.biobb_io' is explicitly added 2025-08-31T04:11:16,818 to the `packages` configuration field. 2025-08-31T04:11:16,818 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,819 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,819 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,820 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,821 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,822 If you don't want 'biobb_adapters.cwl.biobb_io' to be distributed and are 2025-08-31T04:11:16,823 already explicitly excluding 'biobb_adapters.cwl.biobb_io' via 2025-08-31T04:11:16,823 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,824 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,824 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,825 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,826 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,828 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,828 even if it does not contain any `.py` files. 2025-08-31T04:11:16,829 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,829 directory, all directories are treated like packages. 2025-08-31T04:11:16,830 ******************************************************************************** 2025-08-31T04:11:16,831 !! 2025-08-31T04:11:16,831 check.warn(importable) 2025-08-31T04:11:16,832 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_md' is absent from the `packages` configuration. 2025-08-31T04:11:16,832 !! 2025-08-31T04:11:16,833 ******************************************************************************** 2025-08-31T04:11:16,834 ############################ 2025-08-31T04:11:16,834 # Package would be ignored # 2025-08-31T04:11:16,835 ############################ 2025-08-31T04:11:16,835 Python recognizes 'biobb_adapters.cwl.biobb_md' as an importable package[^1], 2025-08-31T04:11:16,836 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,837 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,837 package, please make sure that 'biobb_adapters.cwl.biobb_md' is explicitly added 2025-08-31T04:11:16,838 to the `packages` configuration field. 2025-08-31T04:11:16,839 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,839 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,839 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,840 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,841 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,842 If you don't want 'biobb_adapters.cwl.biobb_md' to be distributed and are 2025-08-31T04:11:16,843 already explicitly excluding 'biobb_adapters.cwl.biobb_md' via 2025-08-31T04:11:16,843 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,843 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,844 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,845 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,846 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,847 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,847 even if it does not contain any `.py` files. 2025-08-31T04:11:16,848 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,848 directory, all directories are treated like packages. 2025-08-31T04:11:16,849 ******************************************************************************** 2025-08-31T04:11:16,850 !! 2025-08-31T04:11:16,850 check.warn(importable) 2025-08-31T04:11:16,851 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_mem' is absent from the `packages` configuration. 2025-08-31T04:11:16,851 !! 2025-08-31T04:11:16,852 ******************************************************************************** 2025-08-31T04:11:16,853 ############################ 2025-08-31T04:11:16,853 # Package would be ignored # 2025-08-31T04:11:16,854 ############################ 2025-08-31T04:11:16,854 Python recognizes 'biobb_adapters.cwl.biobb_mem' as an importable package[^1], 2025-08-31T04:11:16,855 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,856 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,856 package, please make sure that 'biobb_adapters.cwl.biobb_mem' is explicitly added 2025-08-31T04:11:16,857 to the `packages` configuration field. 2025-08-31T04:11:16,858 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,858 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,859 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,860 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,861 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,862 If you don't want 'biobb_adapters.cwl.biobb_mem' to be distributed and are 2025-08-31T04:11:16,862 already explicitly excluding 'biobb_adapters.cwl.biobb_mem' via 2025-08-31T04:11:16,863 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,863 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,864 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,865 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,866 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,867 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,868 even if it does not contain any `.py` files. 2025-08-31T04:11:16,868 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,868 directory, all directories are treated like packages. 2025-08-31T04:11:16,869 ******************************************************************************** 2025-08-31T04:11:16,870 !! 2025-08-31T04:11:16,870 check.warn(importable) 2025-08-31T04:11:16,871 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_ml' is absent from the `packages` configuration. 2025-08-31T04:11:16,871 !! 2025-08-31T04:11:16,872 ******************************************************************************** 2025-08-31T04:11:16,873 ############################ 2025-08-31T04:11:16,873 # Package would be ignored # 2025-08-31T04:11:16,874 ############################ 2025-08-31T04:11:16,874 Python recognizes 'biobb_adapters.cwl.biobb_ml' as an importable package[^1], 2025-08-31T04:11:16,875 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,875 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,876 package, please make sure that 'biobb_adapters.cwl.biobb_ml' is explicitly added 2025-08-31T04:11:16,876 to the `packages` configuration field. 2025-08-31T04:11:16,877 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,878 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,878 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,879 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,881 If you don't want 'biobb_adapters.cwl.biobb_ml' to be distributed and are 2025-08-31T04:11:16,881 already explicitly excluding 'biobb_adapters.cwl.biobb_ml' via 2025-08-31T04:11:16,882 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,882 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,883 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,884 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,885 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,886 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,887 even if it does not contain any `.py` files. 2025-08-31T04:11:16,887 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,888 directory, all directories are treated like packages. 2025-08-31T04:11:16,888 ******************************************************************************** 2025-08-31T04:11:16,889 !! 2025-08-31T04:11:16,890 check.warn(importable) 2025-08-31T04:11:16,890 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_model' is absent from the `packages` configuration. 2025-08-31T04:11:16,891 !! 2025-08-31T04:11:16,892 ******************************************************************************** 2025-08-31T04:11:16,892 ############################ 2025-08-31T04:11:16,893 # Package would be ignored # 2025-08-31T04:11:16,894 ############################ 2025-08-31T04:11:16,894 Python recognizes 'biobb_adapters.cwl.biobb_model' as an importable package[^1], 2025-08-31T04:11:16,895 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,895 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,896 package, please make sure that 'biobb_adapters.cwl.biobb_model' is explicitly added 2025-08-31T04:11:16,896 to the `packages` configuration field. 2025-08-31T04:11:16,897 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,897 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,898 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,899 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,899 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,900 If you don't want 'biobb_adapters.cwl.biobb_model' to be distributed and are 2025-08-31T04:11:16,901 already explicitly excluding 'biobb_adapters.cwl.biobb_model' via 2025-08-31T04:11:16,901 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,902 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,902 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,903 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,904 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,905 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,906 even if it does not contain any `.py` files. 2025-08-31T04:11:16,906 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,907 directory, all directories are treated like packages. 2025-08-31T04:11:16,907 ******************************************************************************** 2025-08-31T04:11:16,908 !! 2025-08-31T04:11:16,909 check.warn(importable) 2025-08-31T04:11:16,909 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_pdb_tools' is absent from the `packages` configuration. 2025-08-31T04:11:16,910 !! 2025-08-31T04:11:16,911 ******************************************************************************** 2025-08-31T04:11:16,911 ############################ 2025-08-31T04:11:16,912 # Package would be ignored # 2025-08-31T04:11:16,912 ############################ 2025-08-31T04:11:16,913 Python recognizes 'biobb_adapters.cwl.biobb_pdb_tools' as an importable package[^1], 2025-08-31T04:11:16,913 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,914 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,915 package, please make sure that 'biobb_adapters.cwl.biobb_pdb_tools' is explicitly added 2025-08-31T04:11:16,915 to the `packages` configuration field. 2025-08-31T04:11:16,916 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,917 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,917 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,918 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,919 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,921 If you don't want 'biobb_adapters.cwl.biobb_pdb_tools' to be distributed and are 2025-08-31T04:11:16,921 already explicitly excluding 'biobb_adapters.cwl.biobb_pdb_tools' via 2025-08-31T04:11:16,922 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,922 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,923 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,923 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,924 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,926 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,926 even if it does not contain any `.py` files. 2025-08-31T04:11:16,926 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,927 directory, all directories are treated like packages. 2025-08-31T04:11:16,927 ******************************************************************************** 2025-08-31T04:11:16,928 !! 2025-08-31T04:11:16,929 check.warn(importable) 2025-08-31T04:11:16,929 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_pmx' is absent from the `packages` configuration. 2025-08-31T04:11:16,929 !! 2025-08-31T04:11:16,930 ******************************************************************************** 2025-08-31T04:11:16,931 ############################ 2025-08-31T04:11:16,931 # Package would be ignored # 2025-08-31T04:11:16,932 ############################ 2025-08-31T04:11:16,932 Python recognizes 'biobb_adapters.cwl.biobb_pmx' as an importable package[^1], 2025-08-31T04:11:16,933 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,934 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,934 package, please make sure that 'biobb_adapters.cwl.biobb_pmx' is explicitly added 2025-08-31T04:11:16,934 to the `packages` configuration field. 2025-08-31T04:11:16,935 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,936 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,936 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,937 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,938 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,939 If you don't want 'biobb_adapters.cwl.biobb_pmx' to be distributed and are 2025-08-31T04:11:16,940 already explicitly excluding 'biobb_adapters.cwl.biobb_pmx' via 2025-08-31T04:11:16,940 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,941 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,941 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,942 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,943 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,945 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,945 even if it does not contain any `.py` files. 2025-08-31T04:11:16,946 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,946 directory, all directories are treated like packages. 2025-08-31T04:11:16,947 ******************************************************************************** 2025-08-31T04:11:16,948 !! 2025-08-31T04:11:16,949 check.warn(importable) 2025-08-31T04:11:16,949 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_pytorch' is absent from the `packages` configuration. 2025-08-31T04:11:16,949 !! 2025-08-31T04:11:16,950 ******************************************************************************** 2025-08-31T04:11:16,951 ############################ 2025-08-31T04:11:16,951 # Package would be ignored # 2025-08-31T04:11:16,951 ############################ 2025-08-31T04:11:16,952 Python recognizes 'biobb_adapters.cwl.biobb_pytorch' as an importable package[^1], 2025-08-31T04:11:16,952 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,953 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,953 package, please make sure that 'biobb_adapters.cwl.biobb_pytorch' is explicitly added 2025-08-31T04:11:16,954 to the `packages` configuration field. 2025-08-31T04:11:16,955 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,955 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,956 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,956 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,957 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,958 If you don't want 'biobb_adapters.cwl.biobb_pytorch' to be distributed and are 2025-08-31T04:11:16,959 already explicitly excluding 'biobb_adapters.cwl.biobb_pytorch' via 2025-08-31T04:11:16,959 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,960 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,960 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,961 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,962 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,963 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,964 even if it does not contain any `.py` files. 2025-08-31T04:11:16,964 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,965 directory, all directories are treated like packages. 2025-08-31T04:11:16,965 ******************************************************************************** 2025-08-31T04:11:16,966 !! 2025-08-31T04:11:16,967 check.warn(importable) 2025-08-31T04:11:16,967 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_structure_utils' is absent from the `packages` configuration. 2025-08-31T04:11:16,968 !! 2025-08-31T04:11:16,969 ******************************************************************************** 2025-08-31T04:11:16,969 ############################ 2025-08-31T04:11:16,970 # Package would be ignored # 2025-08-31T04:11:16,970 ############################ 2025-08-31T04:11:16,971 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils' as an importable package[^1], 2025-08-31T04:11:16,971 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,972 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,973 package, please make sure that 'biobb_adapters.cwl.biobb_structure_utils' is explicitly added 2025-08-31T04:11:16,973 to the `packages` configuration field. 2025-08-31T04:11:16,975 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,975 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,976 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,976 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,977 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,978 If you don't want 'biobb_adapters.cwl.biobb_structure_utils' to be distributed and are 2025-08-31T04:11:16,978 already explicitly excluding 'biobb_adapters.cwl.biobb_structure_utils' via 2025-08-31T04:11:16,979 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,979 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,980 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:16,980 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:16,981 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:16,983 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:16,983 even if it does not contain any `.py` files. 2025-08-31T04:11:16,984 On the other hand, currently there is no concept of package data 2025-08-31T04:11:16,984 directory, all directories are treated like packages. 2025-08-31T04:11:16,985 ******************************************************************************** 2025-08-31T04:11:16,985 !! 2025-08-31T04:11:16,986 check.warn(importable) 2025-08-31T04:11:16,986 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_vs' is absent from the `packages` configuration. 2025-08-31T04:11:16,987 !! 2025-08-31T04:11:16,988 ******************************************************************************** 2025-08-31T04:11:16,988 ############################ 2025-08-31T04:11:16,989 # Package would be ignored # 2025-08-31T04:11:16,990 ############################ 2025-08-31T04:11:16,990 Python recognizes 'biobb_adapters.cwl.biobb_vs' as an importable package[^1], 2025-08-31T04:11:16,990 but it is absent from setuptools' `packages` configuration. 2025-08-31T04:11:16,991 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T04:11:16,992 package, please make sure that 'biobb_adapters.cwl.biobb_vs' is explicitly added 2025-08-31T04:11:16,992 to the `packages` configuration field. 2025-08-31T04:11:16,993 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T04:11:16,994 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T04:11:16,994 instead of `find_packages(...)`/`find:`). 2025-08-31T04:11:16,995 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T04:11:16,996 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T04:11:16,997 If you don't want 'biobb_adapters.cwl.biobb_vs' to be distributed and are 2025-08-31T04:11:16,998 already explicitly excluding 'biobb_adapters.cwl.biobb_vs' via 2025-08-31T04:11:16,998 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T04:11:16,999 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T04:11:16,999 combination with a more fine grained `package-data` configuration. 2025-08-31T04:11:17,000 You can read more about "package data files" on setuptools documentation page: 2025-08-31T04:11:17,001 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T04:11:17,003 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T04:11:17,003 even if it does not contain any `.py` files. 2025-08-31T04:11:17,004 On the other hand, currently there is no concept of package data 2025-08-31T04:11:17,004 directory, all directories are treated like packages. 2025-08-31T04:11:17,004 ******************************************************************************** 2025-08-31T04:11:17,005 !! 2025-08-31T04:11:17,006 check.warn(importable) 2025-08-31T04:11:17,006 copying biobb_adapters/py.typed -> build/lib/biobb_adapters 2025-08-31T04:11:17,006 creating build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,007 copying biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,007 copying biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,008 copying biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,008 copying biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,009 copying biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,009 copying biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,010 copying biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,010 copying biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,010 copying biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,011 copying biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,011 copying biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,012 copying biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,012 copying biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,013 copying biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,013 copying biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,014 copying biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:17,014 creating build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,015 copying biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,015 copying biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,016 copying biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,016 copying biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,017 copying biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,017 copying biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,018 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,018 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,018 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,019 copying biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,020 copying biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,020 copying biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,021 copying biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,021 copying biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,022 copying biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,022 copying biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,022 copying biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,023 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,023 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,024 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:17,024 creating build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,025 copying biobb_adapters/cwl/biobb_chemistry/acpype_convert_amber_to_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,025 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,026 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,026 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,027 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,027 copying biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,028 copying biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,028 copying biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,029 copying biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,029 copying biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,029 copying biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:17,030 creating build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,030 copying biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,031 copying biobb_adapters/cwl/biobb_cmip/cmip_ignore_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,031 copying biobb_adapters/cwl/biobb_cmip/cmip_prepare_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,032 copying biobb_adapters/cwl/biobb_cmip/cmip_prepare_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,032 copying biobb_adapters/cwl/biobb_cmip/cmip_run.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,033 copying biobb_adapters/cwl/biobb_cmip/cmip_titration.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,033 copying biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,034 copying biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,035 copying biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,035 copying biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:17,035 creating build/lib/biobb_adapters/cwl/biobb_cp2k 2025-08-31T04:11:17,036 copying biobb_adapters/cwl/biobb_cp2k/cp2k_prep.cwl -> build/lib/biobb_adapters/cwl/biobb_cp2k 2025-08-31T04:11:17,036 copying biobb_adapters/cwl/biobb_cp2k/cp2k_run.cwl -> build/lib/biobb_adapters/cwl/biobb_cp2k 2025-08-31T04:11:17,037 creating build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,037 copying biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,037 copying biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,038 copying biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,038 copying biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,039 copying biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,039 copying biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,040 copying biobb_adapters/cwl/biobb_dna/canal_unzip.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,040 copying biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,041 copying biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,041 copying biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,042 copying biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,042 copying biobb_adapters/cwl/biobb_dna/dna_timeseries_unzip.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,043 copying biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,043 copying biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,044 copying biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,044 copying biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,045 copying biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,045 copying biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,046 copying biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:17,046 creating build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:17,047 copying biobb_adapters/cwl/biobb_flexdyn/concoord_disco.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:17,047 copying biobb_adapters/cwl/biobb_flexdyn/concoord_dist.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:17,048 copying biobb_adapters/cwl/biobb_flexdyn/imod_imc.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:17,048 copying biobb_adapters/cwl/biobb_flexdyn/imod_imode.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:17,048 copying biobb_adapters/cwl/biobb_flexdyn/imod_imove.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:17,049 copying biobb_adapters/cwl/biobb_flexdyn/nolb_nma.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:17,049 copying biobb_adapters/cwl/biobb_flexdyn/prody_anm.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:17,050 creating build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,051 copying biobb_adapters/cwl/biobb_flexserv/bd_run.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,051 copying biobb_adapters/cwl/biobb_flexserv/dmd_run.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,052 copying biobb_adapters/cwl/biobb_flexserv/nma_run.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,052 copying biobb_adapters/cwl/biobb_flexserv/pcz_animate.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,052 copying biobb_adapters/cwl/biobb_flexserv/pcz_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,053 copying biobb_adapters/cwl/biobb_flexserv/pcz_collectivity.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,053 copying biobb_adapters/cwl/biobb_flexserv/pcz_evecs.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,054 copying biobb_adapters/cwl/biobb_flexserv/pcz_hinges.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,054 copying biobb_adapters/cwl/biobb_flexserv/pcz_info.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,055 copying biobb_adapters/cwl/biobb_flexserv/pcz_lindemann.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,055 copying biobb_adapters/cwl/biobb_flexserv/pcz_similarity.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,056 copying biobb_adapters/cwl/biobb_flexserv/pcz_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,056 copying biobb_adapters/cwl/biobb_flexserv/pcz_unzip.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,056 copying biobb_adapters/cwl/biobb_flexserv/pcz_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:17,057 creating build/lib/biobb_adapters/cwl/biobb_godmd 2025-08-31T04:11:17,057 copying biobb_adapters/cwl/biobb_godmd/godmd_prep.cwl -> build/lib/biobb_adapters/cwl/biobb_godmd 2025-08-31T04:11:17,058 copying biobb_adapters/cwl/biobb_godmd/godmd_run.cwl -> build/lib/biobb_adapters/cwl/biobb_godmd 2025-08-31T04:11:17,058 creating build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,059 copying biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,059 copying biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,060 copying biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,060 copying biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,061 copying biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,061 copying biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,062 copying biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,062 copying biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,063 copying biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,063 copying biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,064 copying biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,064 copying biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,065 copying biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:17,065 creating build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,066 copying biobb_adapters/cwl/biobb_haddock/capri_eval.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,067 copying biobb_adapters/cwl/biobb_haddock/clust_fcc.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,069 copying biobb_adapters/cwl/biobb_haddock/contact_map.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,071 copying biobb_adapters/cwl/biobb_haddock/em_ref.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,074 copying biobb_adapters/cwl/biobb_haddock/flex_ref.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,076 copying biobb_adapters/cwl/biobb_haddock/haddock3_accessibility.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,078 copying biobb_adapters/cwl/biobb_haddock/haddock3_actpass_to_ambig.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,081 copying biobb_adapters/cwl/biobb_haddock/haddock3_extend.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,083 copying biobb_adapters/cwl/biobb_haddock/haddock3_passive_from_active.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,085 copying biobb_adapters/cwl/biobb_haddock/haddock3_restrain_bodies.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,087 copying biobb_adapters/cwl/biobb_haddock/haddock3_run.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,090 copying biobb_adapters/cwl/biobb_haddock/rigid_body.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,092 copying biobb_adapters/cwl/biobb_haddock/sele_top.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,094 copying biobb_adapters/cwl/biobb_haddock/sele_top_clusts.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,097 copying biobb_adapters/cwl/biobb_haddock/topology.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:17,099 creating build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,100 copying biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,102 copying biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,105 copying biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,107 copying biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,109 copying biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,111 copying biobb_adapters/cwl/biobb_io/ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,113 copying biobb_adapters/cwl/biobb_io/mddb.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,116 copying biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,118 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,120 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,122 copying biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,124 copying biobb_adapters/cwl/biobb_io/pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,126 copying biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,129 copying biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,131 copying biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:17,133 creating build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,134 copying biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,136 copying biobb_adapters/cwl/biobb_md/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,138 copying biobb_adapters/cwl/biobb_md/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,140 copying biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,143 copying biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,145 copying biobb_adapters/cwl/biobb_md/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,147 copying biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,150 copying biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,152 copying biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,154 copying biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,157 copying biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,159 copying biobb_adapters/cwl/biobb_md/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:17,161 creating build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:17,162 copying biobb_adapters/cwl/biobb_mem/cpptraj_density.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:17,164 copying biobb_adapters/cwl/biobb_mem/fatslim_apl.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:17,167 copying biobb_adapters/cwl/biobb_mem/fatslim_membranes.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:17,169 copying biobb_adapters/cwl/biobb_mem/gmx_order.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:17,171 copying biobb_adapters/cwl/biobb_mem/lpp_assign_leaflets.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:17,173 copying biobb_adapters/cwl/biobb_mem/lpp_flip_flop.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:17,175 copying biobb_adapters/cwl/biobb_mem/lpp_zpositions.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:17,178 copying biobb_adapters/cwl/biobb_mem/mda_hole.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:17,180 creating build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,181 copying biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,183 copying biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,186 copying biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,188 copying biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,191 copying biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,193 copying biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,196 copying biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,198 copying biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,200 copying biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,202 copying biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,205 copying biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,207 copying biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,210 copying biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,212 copying biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,214 copying biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,217 copying biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,219 copying biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,221 copying biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,224 copying biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,226 copying biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,228 copying biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,230 copying biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,233 copying biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,235 copying biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,237 copying biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,239 copying biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,242 copying biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,244 copying biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,246 copying biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,249 copying biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,251 copying biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,253 copying biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,255 copying biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,258 copying biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,260 copying biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,262 copying biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,265 copying biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,267 copying biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:17,269 creating build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,270 copying biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,273 copying biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,276 copying biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,278 copying biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,281 copying biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,283 copying biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,285 copying biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,287 copying biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,289 copying biobb_adapters/cwl/biobb_model/mutate.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:17,291 creating build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,292 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,295 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chainxseg.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,297 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_delhetatm.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,299 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fetch.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,301 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fixinsert.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,303 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_keepcoord.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,305 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_merge.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,307 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_mkensemble.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,309 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_reres.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,311 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_seg.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,314 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selaltloc.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,316 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selchain.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,318 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selres.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,320 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitmodel.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,322 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitseg.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,325 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tidy.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,327 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tofasta.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,329 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_uniqname.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:17,331 creating build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:17,332 copying biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:17,335 copying biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:17,337 copying biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:17,339 copying biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:17,342 copying biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:17,344 copying biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:17,346 copying biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:17,348 creating build/lib/biobb_adapters/cwl/biobb_pytorch 2025-08-31T04:11:17,350 copying biobb_adapters/cwl/biobb_pytorch/apply_mdae.cwl -> build/lib/biobb_adapters/cwl/biobb_pytorch 2025-08-31T04:11:17,352 copying biobb_adapters/cwl/biobb_pytorch/train_mdae.cwl -> build/lib/biobb_adapters/cwl/biobb_pytorch 2025-08-31T04:11:17,354 creating build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,355 copying biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,358 copying biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,360 copying biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,362 copying biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,364 copying biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,367 copying biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,369 copying biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,371 copying biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,373 copying biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,375 copying biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,377 copying biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,379 copying biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,382 copying biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,384 copying biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,386 copying biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:17,388 creating build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,389 copying biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,391 copying biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,394 copying biobb_adapters/cwl/biobb_vs/box.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,396 copying biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,398 copying biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,400 copying biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,402 copying biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,405 copying biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,407 copying biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:17,457 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-08-31T04:11:17,458 !! 2025-08-31T04:11:17,459 ******************************************************************************** 2025-08-31T04:11:17,460 Please avoid running ``setup.py`` directly. 2025-08-31T04:11:17,460 Instead, use pypa/build, pypa/installer or other 2025-08-31T04:11:17,461 standards-based tools. 2025-08-31T04:11:17,462 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-08-31T04:11:17,463 or your builds will no longer be supported. 2025-08-31T04:11:17,464 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-08-31T04:11:17,464 ******************************************************************************** 2025-08-31T04:11:17,466 !! 2025-08-31T04:11:17,466 self.initialize_options() 2025-08-31T04:11:17,485 installing to build/bdist.linux-armv7l/wheel 2025-08-31T04:11:17,486 running install 2025-08-31T04:11:17,510 running install_lib 2025-08-31T04:11:17,539 creating build/bdist.linux-armv7l/wheel 2025-08-31T04:11:17,541 creating build/bdist.linux-armv7l/wheel/biobb_adapters 2025-08-31T04:11:17,543 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss 2025-08-31T04:11:17,545 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs 2025-08-31T04:11:17,547 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T04:11:17,548 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T04:11:17,550 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T04:11:17,552 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T04:11:17,554 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:17,555 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:17,557 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:17,559 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:17,561 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:17,563 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T04:11:17,566 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:17,567 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:17,569 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:17,571 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:17,573 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:17,575 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T04:11:17,577 copying build/lib/biobb_adapters/pycompss/biobb_vs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs 2025-08-31T04:11:17,579 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx 2025-08-31T04:11:17,580 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,582 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,584 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,586 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,588 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,590 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,592 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,593 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,595 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,597 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,600 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,602 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,605 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T04:11:17,608 copying build/lib/biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx 2025-08-31T04:11:17,610 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml 2025-08-31T04:11:17,611 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:17,613 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:17,615 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:17,616 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:17,618 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:17,620 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:17,622 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:17,624 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T04:11:17,626 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,627 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,629 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,631 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,633 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,635 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,637 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,639 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,641 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,643 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T04:11:17,645 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:17,646 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:17,647 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:17,649 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:17,651 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T04:11:17,653 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:17,654 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:17,656 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:17,658 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:17,660 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:17,662 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:17,664 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:17,666 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:17,667 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T04:11:17,669 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:17,671 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:17,673 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:17,674 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:17,676 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:17,678 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T04:11:17,680 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:17,681 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:17,683 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:17,685 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:17,687 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T04:11:17,689 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:17,690 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:17,692 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:17,694 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:17,696 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:17,697 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:17,699 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:17,701 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:17,703 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T04:11:17,705 copying build/lib/biobb_adapters/pycompss/biobb_ml/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml 2025-08-31T04:11:17,707 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip 2025-08-31T04:11:17,708 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,709 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_ignore_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,712 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,714 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,718 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,720 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,722 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,724 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,725 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,727 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,728 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_titration.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,730 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T04:11:17,732 copying build/lib/biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip 2025-08-31T04:11:17,734 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils 2025-08-31T04:11:17,735 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,737 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,738 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,740 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,742 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,744 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,745 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,747 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,749 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,751 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,753 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,755 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,756 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,758 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,760 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,762 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,764 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,766 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,768 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,770 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,771 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,773 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,775 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,777 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,778 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,780 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,782 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,784 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T04:11:17,785 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils 2025-08-31T04:11:17,787 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md 2025-08-31T04:11:17,789 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:17,790 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:17,792 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:17,794 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:17,796 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:17,798 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T04:11:17,799 copying build/lib/biobb_adapters/pycompss/biobb_md/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md 2025-08-31T04:11:17,801 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,802 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,804 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,806 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,808 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,810 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,811 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,813 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,815 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,817 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,819 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,820 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T04:11:17,823 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2025-08-31T04:11:17,824 copying build/lib/biobb_adapters/pycompss/biobb_commons/task_config.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_commons 2025-08-31T04:11:17,826 copying build/lib/biobb_adapters/pycompss/biobb_commons/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_commons 2025-08-31T04:11:17,828 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io 2025-08-31T04:11:17,829 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,831 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,833 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,835 copying build/lib/biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,837 copying build/lib/biobb_adapters/pycompss/biobb_io/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,838 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,840 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,842 copying build/lib/biobb_adapters/pycompss/biobb_io/api/mddb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,845 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,846 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,848 copying build/lib/biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,850 copying build/lib/biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,852 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,854 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,857 copying build/lib/biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,860 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,862 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,864 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,866 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,868 copying build/lib/biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,869 copying build/lib/biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,871 copying build/lib/biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T04:11:17,873 copying build/lib/biobb_adapters/pycompss/biobb_io/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io 2025-08-31T04:11:17,875 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis 2025-08-31T04:11:17,876 copying build/lib/biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis 2025-08-31T04:11:17,878 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,879 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,881 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,883 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,885 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,887 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,888 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,890 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,892 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,894 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,895 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,897 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,899 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,900 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,902 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,904 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,906 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,908 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,910 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,911 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,913 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,915 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,917 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,919 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,921 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,923 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T04:11:17,925 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,927 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,929 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,931 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,934 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,935 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,937 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,939 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,940 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,942 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,944 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,946 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,947 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,949 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,951 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,953 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,954 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,956 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T04:11:17,959 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model 2025-08-31T04:11:17,960 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,962 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,964 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,966 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,968 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,970 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,972 copying build/lib/biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,974 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,976 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,978 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,980 copying build/lib/biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,981 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,983 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T04:11:17,985 copying build/lib/biobb_adapters/pycompss/biobb_model/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model 2025-08-31T04:11:17,987 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry 2025-08-31T04:11:17,989 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:17,990 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:17,992 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:17,994 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:17,996 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:17,997 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:17,999 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:18,001 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:18,002 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:18,004 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T04:11:18,006 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,008 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,010 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,012 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,014 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,016 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,017 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,019 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,021 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,022 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,024 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T04:11:18,026 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry 2025-08-31T04:11:18,028 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:18,029 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:18,031 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:18,032 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:18,034 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:18,036 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T04:11:18,038 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber 2025-08-31T04:11:18,040 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T04:11:18,041 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T04:11:18,043 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T04:11:18,045 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T04:11:18,046 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T04:11:18,048 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T04:11:18,050 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T04:11:18,052 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T04:11:18,053 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T04:11:18,055 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T04:11:18,057 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T04:11:18,058 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T04:11:18,059 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T04:11:18,061 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T04:11:18,062 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T04:11:18,064 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T04:11:18,066 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T04:11:18,068 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T04:11:18,069 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T04:11:18,071 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T04:11:18,073 copying build/lib/biobb_adapters/pycompss/biobb_amber/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber 2025-08-31T04:11:18,075 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T04:11:18,076 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T04:11:18,078 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T04:11:18,080 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T04:11:18,081 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/process 2025-08-31T04:11:18,083 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/process 2025-08-31T04:11:18,085 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/process 2025-08-31T04:11:18,087 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:18,089 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:18,092 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:18,094 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:18,097 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:18,100 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T04:11:18,102 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T04:11:18,104 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T04:11:18,107 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T04:11:18,109 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T04:11:18,111 copying build/lib/biobb_adapters/pycompss/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss 2025-08-31T04:11:18,112 copying build/lib/biobb_adapters/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_adapters 2025-08-31T04:11:18,114 copying build/lib/biobb_adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters 2025-08-31T04:11:18,117 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl 2025-08-31T04:11:18,119 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,121 copying build/lib/biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,124 copying build/lib/biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,127 copying build/lib/biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,129 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,131 copying build/lib/biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,133 copying build/lib/biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,135 copying build/lib/biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,137 copying build/lib/biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,139 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,141 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,143 copying build/lib/biobb_adapters/cwl/biobb_dna/canal_unzip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,145 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,147 copying build/lib/biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,149 copying build/lib/biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,151 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,153 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,155 copying build/lib/biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,157 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_timeseries_unzip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,159 copying build/lib/biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T04:11:18,162 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:18,163 copying build/lib/biobb_adapters/cwl/biobb_mem/lpp_zpositions.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:18,165 copying build/lib/biobb_adapters/cwl/biobb_mem/lpp_assign_leaflets.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:18,167 copying build/lib/biobb_adapters/cwl/biobb_mem/fatslim_membranes.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:18,168 copying build/lib/biobb_adapters/cwl/biobb_mem/cpptraj_density.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:18,170 copying build/lib/biobb_adapters/cwl/biobb_mem/lpp_flip_flop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:18,172 copying build/lib/biobb_adapters/cwl/biobb_mem/gmx_order.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:18,174 copying build/lib/biobb_adapters/cwl/biobb_mem/fatslim_apl.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:18,176 copying build/lib/biobb_adapters/cwl/biobb_mem/mda_hole.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T04:11:18,179 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_godmd 2025-08-31T04:11:18,180 copying build/lib/biobb_adapters/cwl/biobb_godmd/godmd_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_godmd 2025-08-31T04:11:18,182 copying build/lib/biobb_adapters/cwl/biobb_godmd/godmd_prep.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_godmd 2025-08-31T04:11:18,184 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,185 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,187 copying build/lib/biobb_adapters/cwl/biobb_vs/box.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,189 copying build/lib/biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,191 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,193 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,195 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,197 copying build/lib/biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,199 copying build/lib/biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,200 copying build/lib/biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T04:11:18,203 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:18,204 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:18,206 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:18,209 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:18,211 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:18,212 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:18,214 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:18,216 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T04:11:18,219 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,220 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,222 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,224 copying build/lib/biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,226 copying build/lib/biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,228 copying build/lib/biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,230 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,233 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,236 copying build/lib/biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,238 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,240 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,242 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,244 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,246 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,247 copying build/lib/biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,249 copying build/lib/biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,251 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,254 copying build/lib/biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,256 copying build/lib/biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,259 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,261 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,264 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,266 copying build/lib/biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,268 copying build/lib/biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,270 copying build/lib/biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,272 copying build/lib/biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,274 copying build/lib/biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,276 copying build/lib/biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,278 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,280 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,281 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,283 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,285 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,287 copying build/lib/biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,289 copying build/lib/biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,291 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,293 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,295 copying build/lib/biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,297 copying build/lib/biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T04:11:18,300 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,301 copying build/lib/biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,303 copying build/lib/biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,305 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,307 copying build/lib/biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,309 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,311 copying build/lib/biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,312 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,314 copying build/lib/biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,316 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,318 copying build/lib/biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,320 copying build/lib/biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,322 copying build/lib/biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,324 copying build/lib/biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T04:11:18,326 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,327 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,330 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_ignore_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,544 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,547 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_prepare_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,548 copying build/lib/biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,550 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_prepare_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,552 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,554 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,556 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_titration.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,558 copying build/lib/biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T04:11:18,560 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,561 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,563 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,565 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,567 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,569 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,571 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,573 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,574 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,576 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,578 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,580 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,582 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,583 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,585 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,587 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T04:11:18,590 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,591 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitseg.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,592 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selres.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,594 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fixinsert.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,596 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_uniqname.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,598 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selchain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,600 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fetch.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,601 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tofasta.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,603 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tidy.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,605 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_merge.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,607 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_seg.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,609 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_reres.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,611 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_delhetatm.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,612 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selaltloc.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,614 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,616 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_mkensemble.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,618 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chainxseg.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,620 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_keepcoord.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,622 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitmodel.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T04:11:18,624 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:18,625 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/imod_imove.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:18,627 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/nolb_nma.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:18,629 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/imod_imc.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:18,630 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/imod_imode.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:18,632 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/concoord_disco.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:18,634 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/prody_anm.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:18,636 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/concoord_dist.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T04:11:18,638 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,639 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,641 copying build/lib/biobb_adapters/cwl/biobb_haddock/sele_top.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,643 copying build/lib/biobb_adapters/cwl/biobb_haddock/topology.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,646 copying build/lib/biobb_adapters/cwl/biobb_haddock/capri_eval.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,648 copying build/lib/biobb_adapters/cwl/biobb_haddock/flex_ref.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,650 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_restrain_bodies.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,652 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_actpass_to_ambig.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,654 copying build/lib/biobb_adapters/cwl/biobb_haddock/rigid_body.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,656 copying build/lib/biobb_adapters/cwl/biobb_haddock/em_ref.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,658 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_extend.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,660 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_accessibility.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,662 copying build/lib/biobb_adapters/cwl/biobb_haddock/clust_fcc.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,664 copying build/lib/biobb_adapters/cwl/biobb_haddock/contact_map.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,666 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_passive_from_active.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,667 copying build/lib/biobb_adapters/cwl/biobb_haddock/sele_top_clusts.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T04:11:18,670 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pytorch 2025-08-31T04:11:18,671 copying build/lib/biobb_adapters/cwl/biobb_pytorch/apply_mdae.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pytorch 2025-08-31T04:11:18,673 copying build/lib/biobb_adapters/cwl/biobb_pytorch/train_mdae.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pytorch 2025-08-31T04:11:18,675 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,676 copying build/lib/biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,678 copying build/lib/biobb_adapters/cwl/biobb_md/solvate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,680 copying build/lib/biobb_adapters/cwl/biobb_md/grompp.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,682 copying build/lib/biobb_adapters/cwl/biobb_md/editconf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,684 copying build/lib/biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,686 copying build/lib/biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,688 copying build/lib/biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,690 copying build/lib/biobb_adapters/cwl/biobb_md/genion.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,692 copying build/lib/biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,694 copying build/lib/biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,695 copying build/lib/biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,698 copying build/lib/biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T04:11:18,700 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,701 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_zip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,704 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_evecs.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,705 copying build/lib/biobb_adapters/cwl/biobb_flexserv/nma_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,707 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_hinges.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,709 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_lindemann.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,711 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_animate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,713 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_info.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,715 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_similarity.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,717 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_stiffness.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,719 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_collectivity.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,721 copying build/lib/biobb_adapters/cwl/biobb_flexserv/dmd_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,723 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_bfactor.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,725 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_unzip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,727 copying build/lib/biobb_adapters/cwl/biobb_flexserv/bd_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T04:11:18,730 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,731 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,733 copying build/lib/biobb_adapters/cwl/biobb_io/mddb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,735 copying build/lib/biobb_adapters/cwl/biobb_io/ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,736 copying build/lib/biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,738 copying build/lib/biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,740 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,742 copying build/lib/biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,744 copying build/lib/biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,746 copying build/lib/biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,747 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,749 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,751 copying build/lib/biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,753 copying build/lib/biobb_adapters/cwl/biobb_io/pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,755 copying build/lib/biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,757 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T04:11:18,759 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cp2k 2025-08-31T04:11:18,760 copying build/lib/biobb_adapters/cwl/biobb_cp2k/cp2k_prep.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cp2k 2025-08-31T04:11:18,762 copying build/lib/biobb_adapters/cwl/biobb_cp2k/cp2k_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cp2k 2025-08-31T04:11:18,764 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,766 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,768 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,769 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,771 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,773 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,775 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,777 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,779 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,781 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,783 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,785 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,787 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,789 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,790 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,792 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,794 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,796 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,798 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,800 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,802 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T04:11:18,804 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,805 copying build/lib/biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,807 copying build/lib/biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,809 copying build/lib/biobb_adapters/cwl/biobb_model/mutate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,811 copying build/lib/biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,813 copying build/lib/biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,815 copying build/lib/biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,817 copying build/lib/biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,819 copying build/lib/biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,821 copying build/lib/biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T04:11:18,823 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,824 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,827 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,829 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,830 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,833 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,835 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,836 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,838 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,840 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,842 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,844 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_convert_amber_to_gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T04:11:18,846 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,847 copying build/lib/biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,849 copying build/lib/biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,851 copying build/lib/biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,853 copying build/lib/biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,855 copying build/lib/biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,857 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,859 copying build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,861 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,863 copying build/lib/biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,865 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,867 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,870 copying build/lib/biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,872 copying build/lib/biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,874 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,877 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,879 copying build/lib/biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T04:11:18,882 running install_egg_info 2025-08-31T04:11:18,931 Copying biobb_adapters.egg-info to build/bdist.linux-armv7l/wheel/./biobb_adapters-5.1.0-py3.11.egg-info 2025-08-31T04:11:18,947 running install_scripts 2025-08-31T04:11:18,962 creating build/bdist.linux-armv7l/wheel/biobb_adapters-5.1.0.dist-info/WHEEL 2025-08-31T04:11:18,966 creating '/tmp/pip-wheel-knphhiz8/biobb_adapters-5.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-08-31T04:11:18,968 adding 'biobb_adapters/__init__.py' 2025-08-31T04:11:18,970 adding 'biobb_adapters/py.typed' 2025-08-31T04:11:18,974 adding 'biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl' 2025-08-31T04:11:18,976 adding 'biobb_adapters/cwl/biobb_amber/cestats_run.cwl' 2025-08-31T04:11:18,978 adding 'biobb_adapters/cwl/biobb_amber/cphstats_run.cwl' 2025-08-31T04:11:18,979 adding 'biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl' 2025-08-31T04:11:18,981 adding 'biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl' 2025-08-31T04:11:18,982 adding 'biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl' 2025-08-31T04:11:18,983 adding 'biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl' 2025-08-31T04:11:18,985 adding 'biobb_adapters/cwl/biobb_amber/leap_solvate.cwl' 2025-08-31T04:11:18,986 adding 'biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl' 2025-08-31T04:11:18,988 adding 'biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl' 2025-08-31T04:11:18,989 adding 'biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl' 2025-08-31T04:11:18,990 adding 'biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl' 2025-08-31T04:11:18,992 adding 'biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl' 2025-08-31T04:11:18,993 adding 'biobb_adapters/cwl/biobb_amber/process_mdout.cwl' 2025-08-31T04:11:18,994 adding 'biobb_adapters/cwl/biobb_amber/process_minout.cwl' 2025-08-31T04:11:18,996 adding 'biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl' 2025-08-31T04:11:18,998 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl' 2025-08-31T04:11:18,999 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl' 2025-08-31T04:11:19,001 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl' 2025-08-31T04:11:19,002 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl' 2025-08-31T04:11:19,004 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl' 2025-08-31T04:11:19,005 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl' 2025-08-31T04:11:19,006 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl' 2025-08-31T04:11:19,008 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl' 2025-08-31T04:11:19,009 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl' 2025-08-31T04:11:19,011 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl' 2025-08-31T04:11:19,012 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl' 2025-08-31T04:11:19,014 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl' 2025-08-31T04:11:19,015 adding 'biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl' 2025-08-31T04:11:19,016 adding 'biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl' 2025-08-31T04:11:19,018 adding 'biobb_adapters/cwl/biobb_analysis/gmx_image.cwl' 2025-08-31T04:11:19,019 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl' 2025-08-31T04:11:19,020 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl' 2025-08-31T04:11:19,022 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl' 2025-08-31T04:11:19,023 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl' 2025-08-31T04:11:19,024 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl' 2025-08-31T04:11:19,026 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_convert_amber_to_gmx.cwl' 2025-08-31T04:11:19,028 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl' 2025-08-31T04:11:19,029 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl' 2025-08-31T04:11:19,030 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl' 2025-08-31T04:11:19,032 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl' 2025-08-31T04:11:19,033 adding 'biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl' 2025-08-31T04:11:19,034 adding 'biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl' 2025-08-31T04:11:19,036 adding 'biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl' 2025-08-31T04:11:19,037 adding 'biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl' 2025-08-31T04:11:19,038 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl' 2025-08-31T04:11:19,040 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl' 2025-08-31T04:11:19,042 adding 'biobb_adapters/cwl/biobb_cmip/cmip.cwl' 2025-08-31T04:11:19,043 adding 'biobb_adapters/cwl/biobb_cmip/cmip_ignore_residues.cwl' 2025-08-31T04:11:19,044 adding 'biobb_adapters/cwl/biobb_cmip/cmip_prepare_pdb.cwl' 2025-08-31T04:11:19,046 adding 'biobb_adapters/cwl/biobb_cmip/cmip_prepare_structure.cwl' 2025-08-31T04:11:19,047 adding 'biobb_adapters/cwl/biobb_cmip/cmip_run.cwl' 2025-08-31T04:11:19,048 adding 'biobb_adapters/cwl/biobb_cmip/cmip_titration.cwl' 2025-08-31T04:11:19,050 adding 'biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl' 2025-08-31T04:11:19,051 adding 'biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl' 2025-08-31T04:11:19,052 adding 'biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl' 2025-08-31T04:11:19,054 adding 'biobb_adapters/cwl/biobb_cmip/titration.cwl' 2025-08-31T04:11:19,056 adding 'biobb_adapters/cwl/biobb_cp2k/cp2k_prep.cwl' 2025-08-31T04:11:19,057 adding 'biobb_adapters/cwl/biobb_cp2k/cp2k_run.cwl' 2025-08-31T04:11:19,059 adding 'biobb_adapters/cwl/biobb_dna/average_stiffness.cwl' 2025-08-31T04:11:19,060 adding 'biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl' 2025-08-31T04:11:19,062 adding 'biobb_adapters/cwl/biobb_dna/biobb_canal.cwl' 2025-08-31T04:11:19,063 adding 'biobb_adapters/cwl/biobb_dna/biobb_canion.cwl' 2025-08-31T04:11:19,065 adding 'biobb_adapters/cwl/biobb_dna/biobb_curves.cwl' 2025-08-31T04:11:19,066 adding 'biobb_adapters/cwl/biobb_dna/bipopulations.cwl' 2025-08-31T04:11:19,067 adding 'biobb_adapters/cwl/biobb_dna/canal_unzip.cwl' 2025-08-31T04:11:19,069 adding 'biobb_adapters/cwl/biobb_dna/canonicalag.cwl' 2025-08-31T04:11:19,070 adding 'biobb_adapters/cwl/biobb_dna/dna_averages.cwl' 2025-08-31T04:11:19,071 adding 'biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl' 2025-08-31T04:11:19,073 adding 'biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl' 2025-08-31T04:11:19,074 adding 'biobb_adapters/cwl/biobb_dna/dna_timeseries_unzip.cwl' 2025-08-31T04:11:19,076 adding 'biobb_adapters/cwl/biobb_dna/interbpcorr.cwl' 2025-08-31T04:11:19,077 adding 'biobb_adapters/cwl/biobb_dna/interhpcorr.cwl' 2025-08-31T04:11:19,078 adding 'biobb_adapters/cwl/biobb_dna/interseqcorr.cwl' 2025-08-31T04:11:19,080 adding 'biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl' 2025-08-31T04:11:19,081 adding 'biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl' 2025-08-31T04:11:19,083 adding 'biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl' 2025-08-31T04:11:19,084 adding 'biobb_adapters/cwl/biobb_dna/puckering.cwl' 2025-08-31T04:11:19,086 adding 'biobb_adapters/cwl/biobb_flexdyn/concoord_disco.cwl' 2025-08-31T04:11:19,087 adding 'biobb_adapters/cwl/biobb_flexdyn/concoord_dist.cwl' 2025-08-31T04:11:19,089 adding 'biobb_adapters/cwl/biobb_flexdyn/imod_imc.cwl' 2025-08-31T04:11:19,090 adding 'biobb_adapters/cwl/biobb_flexdyn/imod_imode.cwl' 2025-08-31T04:11:19,091 adding 'biobb_adapters/cwl/biobb_flexdyn/imod_imove.cwl' 2025-08-31T04:11:19,093 adding 'biobb_adapters/cwl/biobb_flexdyn/nolb_nma.cwl' 2025-08-31T04:11:19,094 adding 'biobb_adapters/cwl/biobb_flexdyn/prody_anm.cwl' 2025-08-31T04:11:19,096 adding 'biobb_adapters/cwl/biobb_flexserv/bd_run.cwl' 2025-08-31T04:11:19,097 adding 'biobb_adapters/cwl/biobb_flexserv/dmd_run.cwl' 2025-08-31T04:11:19,099 adding 'biobb_adapters/cwl/biobb_flexserv/nma_run.cwl' 2025-08-31T04:11:19,100 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_animate.cwl' 2025-08-31T04:11:19,101 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_bfactor.cwl' 2025-08-31T04:11:19,102 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_collectivity.cwl' 2025-08-31T04:11:19,104 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_evecs.cwl' 2025-08-31T04:11:19,105 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_hinges.cwl' 2025-08-31T04:11:19,106 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_info.cwl' 2025-08-31T04:11:19,108 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_lindemann.cwl' 2025-08-31T04:11:19,109 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_similarity.cwl' 2025-08-31T04:11:19,110 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_stiffness.cwl' 2025-08-31T04:11:19,112 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_unzip.cwl' 2025-08-31T04:11:19,113 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_zip.cwl' 2025-08-31T04:11:19,115 adding 'biobb_adapters/cwl/biobb_godmd/godmd_prep.cwl' 2025-08-31T04:11:19,117 adding 'biobb_adapters/cwl/biobb_godmd/godmd_run.cwl' 2025-08-31T04:11:19,119 adding 'biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl' 2025-08-31T04:11:19,120 adding 'biobb_adapters/cwl/biobb_gromacs/editconf.cwl' 2025-08-31T04:11:19,121 adding 'biobb_adapters/cwl/biobb_gromacs/genion.cwl' 2025-08-31T04:11:19,123 adding 'biobb_adapters/cwl/biobb_gromacs/genrestr.cwl' 2025-08-31T04:11:19,124 adding 'biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl' 2025-08-31T04:11:19,125 adding 'biobb_adapters/cwl/biobb_gromacs/grompp.cwl' 2025-08-31T04:11:19,127 adding 'biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl' 2025-08-31T04:11:19,128 adding 'biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl' 2025-08-31T04:11:19,130 adding 'biobb_adapters/cwl/biobb_gromacs/mdrun.cwl' 2025-08-31T04:11:19,131 adding 'biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl' 2025-08-31T04:11:19,132 adding 'biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl' 2025-08-31T04:11:19,134 adding 'biobb_adapters/cwl/biobb_gromacs/solvate.cwl' 2025-08-31T04:11:19,135 adding 'biobb_adapters/cwl/biobb_gromacs/trjcat.cwl' 2025-08-31T04:11:19,137 adding 'biobb_adapters/cwl/biobb_haddock/capri_eval.cwl' 2025-08-31T04:11:19,138 adding 'biobb_adapters/cwl/biobb_haddock/clust_fcc.cwl' 2025-08-31T04:11:19,140 adding 'biobb_adapters/cwl/biobb_haddock/contact_map.cwl' 2025-08-31T04:11:19,141 adding 'biobb_adapters/cwl/biobb_haddock/em_ref.cwl' 2025-08-31T04:11:19,143 adding 'biobb_adapters/cwl/biobb_haddock/flex_ref.cwl' 2025-08-31T04:11:19,144 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_accessibility.cwl' 2025-08-31T04:11:19,145 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_actpass_to_ambig.cwl' 2025-08-31T04:11:19,147 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_extend.cwl' 2025-08-31T04:11:19,148 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_passive_from_active.cwl' 2025-08-31T04:11:19,149 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_restrain_bodies.cwl' 2025-08-31T04:11:19,151 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_run.cwl' 2025-08-31T04:11:19,152 adding 'biobb_adapters/cwl/biobb_haddock/rigid_body.cwl' 2025-08-31T04:11:19,153 adding 'biobb_adapters/cwl/biobb_haddock/sele_top.cwl' 2025-08-31T04:11:19,155 adding 'biobb_adapters/cwl/biobb_haddock/sele_top_clusts.cwl' 2025-08-31T04:11:19,156 adding 'biobb_adapters/cwl/biobb_haddock/topology.cwl' 2025-08-31T04:11:19,158 adding 'biobb_adapters/cwl/biobb_io/alphafold.cwl' 2025-08-31T04:11:19,159 adding 'biobb_adapters/cwl/biobb_io/api_binding_site.cwl' 2025-08-31T04:11:19,160 adding 'biobb_adapters/cwl/biobb_io/canonical_fasta.cwl' 2025-08-31T04:11:19,162 adding 'biobb_adapters/cwl/biobb_io/drugbank.cwl' 2025-08-31T04:11:19,163 adding 'biobb_adapters/cwl/biobb_io/ideal_sdf.cwl' 2025-08-31T04:11:19,164 adding 'biobb_adapters/cwl/biobb_io/ligand.cwl' 2025-08-31T04:11:19,165 adding 'biobb_adapters/cwl/biobb_io/mddb.cwl' 2025-08-31T04:11:19,166 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl' 2025-08-31T04:11:19,168 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl' 2025-08-31T04:11:19,169 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl' 2025-08-31T04:11:19,170 adding 'biobb_adapters/cwl/biobb_io/mmcif.cwl' 2025-08-31T04:11:19,171 adding 'biobb_adapters/cwl/biobb_io/pdb.cwl' 2025-08-31T04:11:19,173 adding 'biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl' 2025-08-31T04:11:19,174 adding 'biobb_adapters/cwl/biobb_io/pdb_variants.cwl' 2025-08-31T04:11:19,175 adding 'biobb_adapters/cwl/biobb_io/structure_info.cwl' 2025-08-31T04:11:19,177 adding 'biobb_adapters/cwl/biobb_md/append_ligand.cwl' 2025-08-31T04:11:19,178 adding 'biobb_adapters/cwl/biobb_md/editconf.cwl' 2025-08-31T04:11:19,180 adding 'biobb_adapters/cwl/biobb_md/genion.cwl' 2025-08-31T04:11:19,181 adding 'biobb_adapters/cwl/biobb_md/genrestr.cwl' 2025-08-31T04:11:19,182 adding 'biobb_adapters/cwl/biobb_md/gmxselect.cwl' 2025-08-31T04:11:19,184 adding 'biobb_adapters/cwl/biobb_md/grompp.cwl' 2025-08-31T04:11:19,185 adding 'biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl' 2025-08-31T04:11:19,187 adding 'biobb_adapters/cwl/biobb_md/make_ndx.cwl' 2025-08-31T04:11:19,188 adding 'biobb_adapters/cwl/biobb_md/mdrun.cwl' 2025-08-31T04:11:19,189 adding 'biobb_adapters/cwl/biobb_md/ndx2resttop.cwl' 2025-08-31T04:11:19,190 adding 'biobb_adapters/cwl/biobb_md/pdb2gmx.cwl' 2025-08-31T04:11:19,192 adding 'biobb_adapters/cwl/biobb_md/solvate.cwl' 2025-08-31T04:11:19,194 adding 'biobb_adapters/cwl/biobb_mem/cpptraj_density.cwl' 2025-08-31T04:11:19,195 adding 'biobb_adapters/cwl/biobb_mem/fatslim_apl.cwl' 2025-08-31T04:11:19,197 adding 'biobb_adapters/cwl/biobb_mem/fatslim_membranes.cwl' 2025-08-31T04:11:19,198 adding 'biobb_adapters/cwl/biobb_mem/gmx_order.cwl' 2025-08-31T04:11:19,199 adding 'biobb_adapters/cwl/biobb_mem/lpp_assign_leaflets.cwl' 2025-08-31T04:11:19,201 adding 'biobb_adapters/cwl/biobb_mem/lpp_flip_flop.cwl' 2025-08-31T04:11:19,202 adding 'biobb_adapters/cwl/biobb_mem/lpp_zpositions.cwl' 2025-08-31T04:11:19,203 adding 'biobb_adapters/cwl/biobb_mem/mda_hole.cwl' 2025-08-31T04:11:19,206 adding 'biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl' 2025-08-31T04:11:19,207 adding 'biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl' 2025-08-31T04:11:19,208 adding 'biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl' 2025-08-31T04:11:19,210 adding 'biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl' 2025-08-31T04:11:19,211 adding 'biobb_adapters/cwl/biobb_ml/classification_predict.cwl' 2025-08-31T04:11:19,212 adding 'biobb_adapters/cwl/biobb_ml/clustering_predict.cwl' 2025-08-31T04:11:19,214 adding 'biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl' 2025-08-31T04:11:19,215 adding 'biobb_adapters/cwl/biobb_ml/dbscan.cwl' 2025-08-31T04:11:19,217 adding 'biobb_adapters/cwl/biobb_ml/decision_tree.cwl' 2025-08-31T04:11:19,218 adding 'biobb_adapters/cwl/biobb_ml/dendrogram.cwl' 2025-08-31T04:11:19,219 adding 'biobb_adapters/cwl/biobb_ml/drop_columns.cwl' 2025-08-31T04:11:19,221 adding 'biobb_adapters/cwl/biobb_ml/dummy_variables.cwl' 2025-08-31T04:11:19,222 adding 'biobb_adapters/cwl/biobb_ml/k_means.cwl' 2025-08-31T04:11:19,223 adding 'biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl' 2025-08-31T04:11:19,225 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors.cwl' 2025-08-31T04:11:19,226 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl' 2025-08-31T04:11:19,227 adding 'biobb_adapters/cwl/biobb_ml/linear_regression.cwl' 2025-08-31T04:11:19,229 adding 'biobb_adapters/cwl/biobb_ml/logistic_regression.cwl' 2025-08-31T04:11:19,230 adding 'biobb_adapters/cwl/biobb_ml/map_variables.cwl' 2025-08-31T04:11:19,231 adding 'biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl' 2025-08-31T04:11:19,232 adding 'biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl' 2025-08-31T04:11:19,234 adding 'biobb_adapters/cwl/biobb_ml/oversampling.cwl' 2025-08-31T04:11:19,235 adding 'biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl' 2025-08-31T04:11:19,236 adding 'biobb_adapters/cwl/biobb_ml/pls_components.cwl' 2025-08-31T04:11:19,237 adding 'biobb_adapters/cwl/biobb_ml/pls_regression.cwl' 2025-08-31T04:11:19,239 adding 'biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl' 2025-08-31T04:11:19,240 adding 'biobb_adapters/cwl/biobb_ml/principal_component.cwl' 2025-08-31T04:11:19,241 adding 'biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl' 2025-08-31T04:11:19,243 adding 'biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl' 2025-08-31T04:11:19,244 adding 'biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl' 2025-08-31T04:11:19,245 adding 'biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl' 2025-08-31T04:11:19,247 adding 'biobb_adapters/cwl/biobb_ml/regression_predict.cwl' 2025-08-31T04:11:19,248 adding 'biobb_adapters/cwl/biobb_ml/resampling.cwl' 2025-08-31T04:11:19,249 adding 'biobb_adapters/cwl/biobb_ml/scale_columns.cwl' 2025-08-31T04:11:19,251 adding 'biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl' 2025-08-31T04:11:19,252 adding 'biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl' 2025-08-31T04:11:19,253 adding 'biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl' 2025-08-31T04:11:19,255 adding 'biobb_adapters/cwl/biobb_ml/undersampling.cwl' 2025-08-31T04:11:19,257 adding 'biobb_adapters/cwl/biobb_model/checking_log.cwl' 2025-08-31T04:11:19,258 adding 'biobb_adapters/cwl/biobb_model/fix_altlocs.cwl' 2025-08-31T04:11:19,259 adding 'biobb_adapters/cwl/biobb_model/fix_amides.cwl' 2025-08-31T04:11:19,260 adding 'biobb_adapters/cwl/biobb_model/fix_backbone.cwl' 2025-08-31T04:11:19,262 adding 'biobb_adapters/cwl/biobb_model/fix_chirality.cwl' 2025-08-31T04:11:19,263 adding 'biobb_adapters/cwl/biobb_model/fix_pdb.cwl' 2025-08-31T04:11:19,264 adding 'biobb_adapters/cwl/biobb_model/fix_side_chain.cwl' 2025-08-31T04:11:19,266 adding 'biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl' 2025-08-31T04:11:19,267 adding 'biobb_adapters/cwl/biobb_model/mutate.cwl' 2025-08-31T04:11:19,269 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chain.cwl' 2025-08-31T04:11:19,270 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chainxseg.cwl' 2025-08-31T04:11:19,271 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_delhetatm.cwl' 2025-08-31T04:11:19,273 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fetch.cwl' 2025-08-31T04:11:19,274 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fixinsert.cwl' 2025-08-31T04:11:19,275 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_keepcoord.cwl' 2025-08-31T04:11:19,277 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_merge.cwl' 2025-08-31T04:11:19,278 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_mkensemble.cwl' 2025-08-31T04:11:19,279 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_reres.cwl' 2025-08-31T04:11:19,281 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_seg.cwl' 2025-08-31T04:11:19,282 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selaltloc.cwl' 2025-08-31T04:11:19,285 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selchain.cwl' 2025-08-31T04:11:19,286 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selres.cwl' 2025-08-31T04:11:19,287 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitmodel.cwl' 2025-08-31T04:11:19,289 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitseg.cwl' 2025-08-31T04:11:19,290 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tidy.cwl' 2025-08-31T04:11:19,291 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tofasta.cwl' 2025-08-31T04:11:19,292 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_uniqname.cwl' 2025-08-31T04:11:19,294 adding 'biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl' 2025-08-31T04:11:19,295 adding 'biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl' 2025-08-31T04:11:19,297 adding 'biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl' 2025-08-31T04:11:19,298 adding 'biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl' 2025-08-31T04:11:19,300 adding 'biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl' 2025-08-31T04:11:19,301 adding 'biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl' 2025-08-31T04:11:19,302 adding 'biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl' 2025-08-31T04:11:19,304 adding 'biobb_adapters/cwl/biobb_pytorch/apply_mdae.cwl' 2025-08-31T04:11:19,305 adding 'biobb_adapters/cwl/biobb_pytorch/train_mdae.cwl' 2025-08-31T04:11:19,307 adding 'biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl' 2025-08-31T04:11:19,308 adding 'biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl' 2025-08-31T04:11:19,310 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl' 2025-08-31T04:11:19,311 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl' 2025-08-31T04:11:19,312 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl' 2025-08-31T04:11:19,313 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl' 2025-08-31T04:11:19,315 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl' 2025-08-31T04:11:19,316 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl' 2025-08-31T04:11:19,317 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl' 2025-08-31T04:11:19,318 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl' 2025-08-31T04:11:19,320 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl' 2025-08-31T04:11:19,321 adding 'biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl' 2025-08-31T04:11:19,322 adding 'biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl' 2025-08-31T04:11:19,324 adding 'biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl' 2025-08-31T04:11:19,325 adding 'biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl' 2025-08-31T04:11:19,327 adding 'biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl' 2025-08-31T04:11:19,328 adding 'biobb_adapters/cwl/biobb_vs/bindingsite.cwl' 2025-08-31T04:11:19,330 adding 'biobb_adapters/cwl/biobb_vs/box.cwl' 2025-08-31T04:11:19,331 adding 'biobb_adapters/cwl/biobb_vs/box_residues.cwl' 2025-08-31T04:11:19,332 adding 'biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl' 2025-08-31T04:11:19,333 adding 'biobb_adapters/cwl/biobb_vs/fpocket.cwl' 2025-08-31T04:11:19,335 adding 'biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl' 2025-08-31T04:11:19,336 adding 'biobb_adapters/cwl/biobb_vs/fpocket_run.cwl' 2025-08-31T04:11:19,337 adding 'biobb_adapters/cwl/biobb_vs/fpocket_select.cwl' 2025-08-31T04:11:19,339 adding 'biobb_adapters/pycompss/__init__.py' 2025-08-31T04:11:19,341 adding 'biobb_adapters/pycompss/biobb_amber/__init__.py' 2025-08-31T04:11:19,342 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py' 2025-08-31T04:11:19,344 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py' 2025-08-31T04:11:19,345 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py' 2025-08-31T04:11:19,347 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py' 2025-08-31T04:11:19,348 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py' 2025-08-31T04:11:19,350 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py' 2025-08-31T04:11:19,351 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py' 2025-08-31T04:11:19,353 adding 'biobb_adapters/pycompss/biobb_amber/leap/__init__.py' 2025-08-31T04:11:19,354 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py' 2025-08-31T04:11:19,355 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py' 2025-08-31T04:11:19,356 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py' 2025-08-31T04:11:19,358 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py' 2025-08-31T04:11:19,359 adding 'biobb_adapters/pycompss/biobb_amber/nab/__init__.py' 2025-08-31T04:11:19,360 adding 'biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py' 2025-08-31T04:11:19,362 adding 'biobb_adapters/pycompss/biobb_amber/parmed/__init__.py' 2025-08-31T04:11:19,363 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py' 2025-08-31T04:11:19,364 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py' 2025-08-31T04:11:19,366 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py' 2025-08-31T04:11:19,367 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py' 2025-08-31T04:11:19,368 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py' 2025-08-31T04:11:19,369 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py' 2025-08-31T04:11:19,371 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py' 2025-08-31T04:11:19,372 adding 'biobb_adapters/pycompss/biobb_amber/process/__init__.py' 2025-08-31T04:11:19,374 adding 'biobb_adapters/pycompss/biobb_amber/process/process_mdout.py' 2025-08-31T04:11:19,375 adding 'biobb_adapters/pycompss/biobb_amber/process/process_minout.py' 2025-08-31T04:11:19,376 adding 'biobb_adapters/pycompss/biobb_amber/sander/__init__.py' 2025-08-31T04:11:19,377 adding 'biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py' 2025-08-31T04:11:19,379 adding 'biobb_adapters/pycompss/biobb_analysis/__init__.py' 2025-08-31T04:11:19,381 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py' 2025-08-31T04:11:19,382 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py' 2025-08-31T04:11:19,384 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py' 2025-08-31T04:11:19,385 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py' 2025-08-31T04:11:19,386 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py' 2025-08-31T04:11:19,387 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py' 2025-08-31T04:11:19,388 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py' 2025-08-31T04:11:19,389 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py' 2025-08-31T04:11:19,391 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py' 2025-08-31T04:11:19,392 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py' 2025-08-31T04:11:19,393 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py' 2025-08-31T04:11:19,394 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py' 2025-08-31T04:11:19,396 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py' 2025-08-31T04:11:19,397 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py' 2025-08-31T04:11:19,398 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py' 2025-08-31T04:11:19,399 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py' 2025-08-31T04:11:19,401 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py' 2025-08-31T04:11:19,402 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py' 2025-08-31T04:11:19,403 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py' 2025-08-31T04:11:19,404 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py' 2025-08-31T04:11:19,405 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py' 2025-08-31T04:11:19,407 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py' 2025-08-31T04:11:19,408 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py' 2025-08-31T04:11:19,409 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py' 2025-08-31T04:11:19,410 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py' 2025-08-31T04:11:19,412 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py' 2025-08-31T04:11:19,413 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py' 2025-08-31T04:11:19,414 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py' 2025-08-31T04:11:19,415 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py' 2025-08-31T04:11:19,416 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py' 2025-08-31T04:11:19,418 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py' 2025-08-31T04:11:19,419 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py' 2025-08-31T04:11:19,420 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py' 2025-08-31T04:11:19,421 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py' 2025-08-31T04:11:19,422 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py' 2025-08-31T04:11:19,424 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py' 2025-08-31T04:11:19,425 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py' 2025-08-31T04:11:19,426 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py' 2025-08-31T04:11:19,427 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py' 2025-08-31T04:11:19,428 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py' 2025-08-31T04:11:19,430 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py' 2025-08-31T04:11:19,431 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py' 2025-08-31T04:11:19,433 adding 'biobb_adapters/pycompss/biobb_chemistry/__init__.py' 2025-08-31T04:11:19,434 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py' 2025-08-31T04:11:19,435 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py' 2025-08-31T04:11:19,437 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py' 2025-08-31T04:11:19,438 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py' 2025-08-31T04:11:19,439 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py' 2025-08-31T04:11:19,440 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py' 2025-08-31T04:11:19,442 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py' 2025-08-31T04:11:19,443 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py' 2025-08-31T04:11:19,444 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py' 2025-08-31T04:11:19,445 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py' 2025-08-31T04:11:19,447 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py' 2025-08-31T04:11:19,448 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py' 2025-08-31T04:11:19,449 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py' 2025-08-31T04:11:19,451 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py' 2025-08-31T04:11:19,452 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py' 2025-08-31T04:11:19,454 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py' 2025-08-31T04:11:19,455 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py' 2025-08-31T04:11:19,456 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py' 2025-08-31T04:11:19,457 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py' 2025-08-31T04:11:19,458 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py' 2025-08-31T04:11:19,460 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py' 2025-08-31T04:11:19,461 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py' 2025-08-31T04:11:19,462 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py' 2025-08-31T04:11:19,463 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py' 2025-08-31T04:11:19,464 adding 'biobb_adapters/pycompss/biobb_cmip/__init__.py' 2025-08-31T04:11:19,466 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py' 2025-08-31T04:11:19,467 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py' 2025-08-31T04:11:19,468 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_ignore_residues.py' 2025-08-31T04:11:19,470 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_pdb.py' 2025-08-31T04:11:19,471 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_structure.py' 2025-08-31T04:11:19,472 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_run.py' 2025-08-31T04:11:19,474 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_titration.py' 2025-08-31T04:11:19,475 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py' 2025-08-31T04:11:19,476 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py' 2025-08-31T04:11:19,477 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py' 2025-08-31T04:11:19,478 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/titration.py' 2025-08-31T04:11:19,480 adding 'biobb_adapters/pycompss/biobb_commons/__init__.py' 2025-08-31T04:11:19,481 adding 'biobb_adapters/pycompss/biobb_commons/task_config.py' 2025-08-31T04:11:19,483 adding 'biobb_adapters/pycompss/biobb_io/__init__.py' 2025-08-31T04:11:19,485 adding 'biobb_adapters/pycompss/biobb_io/api/__init__.py' 2025-08-31T04:11:19,486 adding 'biobb_adapters/pycompss/biobb_io/api/alphafold.py' 2025-08-31T04:11:19,487 adding 'biobb_adapters/pycompss/biobb_io/api/api_binding_site.py' 2025-08-31T04:11:19,488 adding 'biobb_adapters/pycompss/biobb_io/api/binding_site.py' 2025-08-31T04:11:19,490 adding 'biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py' 2025-08-31T04:11:19,491 adding 'biobb_adapters/pycompss/biobb_io/api/drugbank.py' 2025-08-31T04:11:19,492 adding 'biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py' 2025-08-31T04:11:19,493 adding 'biobb_adapters/pycompss/biobb_io/api/ligand.py' 2025-08-31T04:11:19,495 adding 'biobb_adapters/pycompss/biobb_io/api/ligand_pc.py' 2025-08-31T04:11:19,496 adding 'biobb_adapters/pycompss/biobb_io/api/mddb.py' 2025-08-31T04:11:19,497 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py' 2025-08-31T04:11:19,498 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py' 2025-08-31T04:11:19,499 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py' 2025-08-31T04:11:19,501 adding 'biobb_adapters/pycompss/biobb_io/api/mmcif.py' 2025-08-31T04:11:19,502 adding 'biobb_adapters/pycompss/biobb_io/api/pdb.py' 2025-08-31T04:11:19,503 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py' 2025-08-31T04:11:19,504 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py' 2025-08-31T04:11:19,505 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_pc.py' 2025-08-31T04:11:19,507 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants.py' 2025-08-31T04:11:19,508 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py' 2025-08-31T04:11:19,509 adding 'biobb_adapters/pycompss/biobb_io/api/structure_info.py' 2025-08-31T04:11:19,511 adding 'biobb_adapters/pycompss/biobb_md/__init__.py' 2025-08-31T04:11:19,513 adding 'biobb_adapters/pycompss/biobb_md/gromacs/__init__.py' 2025-08-31T04:11:19,514 adding 'biobb_adapters/pycompss/biobb_md/gromacs/editconf.py' 2025-08-31T04:11:19,515 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genion.py' 2025-08-31T04:11:19,516 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py' 2025-08-31T04:11:19,517 adding 'biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py' 2025-08-31T04:11:19,518 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp.py' 2025-08-31T04:11:19,520 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py' 2025-08-31T04:11:19,521 adding 'biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py' 2025-08-31T04:11:19,522 adding 'biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py' 2025-08-31T04:11:19,524 adding 'biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py' 2025-08-31T04:11:19,525 adding 'biobb_adapters/pycompss/biobb_md/gromacs/solvate.py' 2025-08-31T04:11:19,526 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py' 2025-08-31T04:11:19,528 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py' 2025-08-31T04:11:19,529 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py' 2025-08-31T04:11:19,530 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py' 2025-08-31T04:11:19,531 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py' 2025-08-31T04:11:19,533 adding 'biobb_adapters/pycompss/biobb_ml/__init__.py' 2025-08-31T04:11:19,534 adding 'biobb_adapters/pycompss/biobb_ml/classification/__init__.py' 2025-08-31T04:11:19,536 adding 'biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py' 2025-08-31T04:11:19,537 adding 'biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py' 2025-08-31T04:11:19,538 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py' 2025-08-31T04:11:19,539 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py' 2025-08-31T04:11:19,540 adding 'biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py' 2025-08-31T04:11:19,542 adding 'biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py' 2025-08-31T04:11:19,543 adding 'biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py' 2025-08-31T04:11:19,545 adding 'biobb_adapters/pycompss/biobb_ml/clustering/__init__.py' 2025-08-31T04:11:19,546 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py' 2025-08-31T04:11:19,547 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py' 2025-08-31T04:11:19,548 adding 'biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py' 2025-08-31T04:11:19,550 adding 'biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py' 2025-08-31T04:11:19,551 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means.py' 2025-08-31T04:11:19,552 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py' 2025-08-31T04:11:19,553 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py' 2025-08-31T04:11:19,555 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py' 2025-08-31T04:11:19,556 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py' 2025-08-31T04:11:19,557 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py' 2025-08-31T04:11:19,559 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py' 2025-08-31T04:11:19,560 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py' 2025-08-31T04:11:19,562 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py' 2025-08-31T04:11:19,563 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py' 2025-08-31T04:11:19,564 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py' 2025-08-31T04:11:19,566 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py' 2025-08-31T04:11:19,567 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py' 2025-08-31T04:11:19,568 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py' 2025-08-31T04:11:19,569 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py' 2025-08-31T04:11:19,571 adding 'biobb_adapters/pycompss/biobb_ml/regression/__init__.py' 2025-08-31T04:11:19,572 adding 'biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py' 2025-08-31T04:11:19,573 adding 'biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py' 2025-08-31T04:11:19,574 adding 'biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py' 2025-08-31T04:11:19,576 adding 'biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py' 2025-08-31T04:11:19,577 adding 'biobb_adapters/pycompss/biobb_ml/resampling/__init__.py' 2025-08-31T04:11:19,578 adding 'biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py' 2025-08-31T04:11:19,579 adding 'biobb_adapters/pycompss/biobb_ml/resampling/resampling.py' 2025-08-31T04:11:19,581 adding 'biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py' 2025-08-31T04:11:19,582 adding 'biobb_adapters/pycompss/biobb_ml/utils/__init__.py' 2025-08-31T04:11:19,584 adding 'biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py' 2025-08-31T04:11:19,585 adding 'biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py' 2025-08-31T04:11:19,586 adding 'biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py' 2025-08-31T04:11:19,587 adding 'biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py' 2025-08-31T04:11:19,589 adding 'biobb_adapters/pycompss/biobb_ml/utils/map_variables.py' 2025-08-31T04:11:19,590 adding 'biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py' 2025-08-31T04:11:19,591 adding 'biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py' 2025-08-31T04:11:19,593 adding 'biobb_adapters/pycompss/biobb_model/__init__.py' 2025-08-31T04:11:19,595 adding 'biobb_adapters/pycompss/biobb_model/model/__init__.py' 2025-08-31T04:11:19,596 adding 'biobb_adapters/pycompss/biobb_model/model/checking_log.py' 2025-08-31T04:11:19,597 adding 'biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py' 2025-08-31T04:11:19,599 adding 'biobb_adapters/pycompss/biobb_model/model/fix_amides.py' 2025-08-31T04:11:19,600 adding 'biobb_adapters/pycompss/biobb_model/model/fix_backbone.py' 2025-08-31T04:11:19,601 adding 'biobb_adapters/pycompss/biobb_model/model/fix_chirality.py' 2025-08-31T04:11:19,602 adding 'biobb_adapters/pycompss/biobb_model/model/fix_pdb.py' 2025-08-31T04:11:19,604 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py' 2025-08-31T04:11:19,605 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py' 2025-08-31T04:11:19,606 adding 'biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py' 2025-08-31T04:11:19,607 adding 'biobb_adapters/pycompss/biobb_model/model/mutate.py' 2025-08-31T04:11:19,608 adding 'biobb_adapters/pycompss/biobb_model/model/mutate_pc.py' 2025-08-31T04:11:19,610 adding 'biobb_adapters/pycompss/biobb_pmx/__init__.py' 2025-08-31T04:11:19,612 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py' 2025-08-31T04:11:19,613 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py' 2025-08-31T04:11:19,614 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py' 2025-08-31T04:11:19,615 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py' 2025-08-31T04:11:19,617 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py' 2025-08-31T04:11:19,618 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py' 2025-08-31T04:11:19,619 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py' 2025-08-31T04:11:19,620 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py' 2025-08-31T04:11:19,622 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py' 2025-08-31T04:11:19,623 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py' 2025-08-31T04:11:19,625 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py' 2025-08-31T04:11:19,626 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py' 2025-08-31T04:11:19,628 adding 'biobb_adapters/pycompss/biobb_structure_utils/__init__.py' 2025-08-31T04:11:19,629 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py' 2025-08-31T04:11:19,631 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py' 2025-08-31T04:11:19,632 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py' 2025-08-31T04:11:19,633 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py' 2025-08-31T04:11:19,635 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py' 2025-08-31T04:11:19,636 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py' 2025-08-31T04:11:19,637 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py' 2025-08-31T04:11:19,638 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py' 2025-08-31T04:11:19,639 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py' 2025-08-31T04:11:19,641 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py' 2025-08-31T04:11:19,642 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py' 2025-08-31T04:11:19,643 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py' 2025-08-31T04:11:19,644 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py' 2025-08-31T04:11:19,646 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py' 2025-08-31T04:11:19,647 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py' 2025-08-31T04:11:19,648 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py' 2025-08-31T04:11:19,649 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py' 2025-08-31T04:11:19,650 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py' 2025-08-31T04:11:19,652 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py' 2025-08-31T04:11:19,653 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py' 2025-08-31T04:11:19,654 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py' 2025-08-31T04:11:19,655 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py' 2025-08-31T04:11:19,656 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py' 2025-08-31T04:11:19,658 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py' 2025-08-31T04:11:19,659 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py' 2025-08-31T04:11:19,660 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py' 2025-08-31T04:11:19,661 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py' 2025-08-31T04:11:19,663 adding 'biobb_adapters/pycompss/biobb_vs/__init__.py' 2025-08-31T04:11:19,665 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py' 2025-08-31T04:11:19,666 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py' 2025-08-31T04:11:19,667 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py' 2025-08-31T04:11:19,668 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py' 2025-08-31T04:11:19,670 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py' 2025-08-31T04:11:19,671 adding 'biobb_adapters/pycompss/biobb_vs/utils/__init__.py' 2025-08-31T04:11:19,673 adding 'biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py' 2025-08-31T04:11:19,674 adding 'biobb_adapters/pycompss/biobb_vs/utils/box.py' 2025-08-31T04:11:19,675 adding 'biobb_adapters/pycompss/biobb_vs/utils/box_residues.py' 2025-08-31T04:11:19,676 adding 'biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py' 2025-08-31T04:11:19,678 adding 'biobb_adapters/pycompss/biobb_vs/vina/__init__.py' 2025-08-31T04:11:19,680 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py' 2025-08-31T04:11:19,681 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py' 2025-08-31T04:11:19,685 adding 'biobb_adapters-5.1.0.dist-info/licenses/LICENSE' 2025-08-31T04:11:19,686 adding 'biobb_adapters-5.1.0.dist-info/METADATA' 2025-08-31T04:11:19,687 adding 'biobb_adapters-5.1.0.dist-info/WHEEL' 2025-08-31T04:11:19,688 adding 'biobb_adapters-5.1.0.dist-info/top_level.txt' 2025-08-31T04:11:19,697 adding 'biobb_adapters-5.1.0.dist-info/RECORD' 2025-08-31T04:11:19,712 removing build/bdist.linux-armv7l/wheel 2025-08-31T04:11:19,941 Building wheel for biobb-adapters (setup.py): finished with status 'done' 2025-08-31T04:11:19,948 Created wheel for biobb-adapters: filename=biobb_adapters-5.1.0-py3-none-any.whl size=482311 sha256=3da56d6d85f10b70181e1528e87acf2ffffe23814eae39e3db91262d42166fbd 2025-08-31T04:11:19,949 Stored in directory: /tmp/pip-ephem-wheel-cache-kgia5ydi/wheels/07/8d/15/7d9dfe31b49b805e25d9cf6200a71a1604e6d155e37fb05ba5 2025-08-31T04:11:19,975 Successfully built biobb-adapters 2025-08-31T04:11:19,995 Removed build tracker: '/tmp/pip-build-tracker-kctmtbwh'