2025-08-31T12:58:52,214 Created temporary directory: /tmp/pip-build-tracker-qin90y8s 2025-08-31T12:58:52,215 Initialized build tracking at /tmp/pip-build-tracker-qin90y8s 2025-08-31T12:58:52,215 Created build tracker: /tmp/pip-build-tracker-qin90y8s 2025-08-31T12:58:52,216 Entered build tracker: /tmp/pip-build-tracker-qin90y8s 2025-08-31T12:58:52,217 Created temporary directory: /tmp/pip-wheel-p8fiz7lx 2025-08-31T12:58:52,221 Created temporary directory: /tmp/pip-ephem-wheel-cache-_iubrcix 2025-08-31T12:58:52,271 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-08-31T12:58:52,274 2 location(s) to search for versions of biobb-gromacs: 2025-08-31T12:58:52,274 * https://pypi.org/simple/biobb-gromacs/ 2025-08-31T12:58:52,274 * https://www.piwheels.org/simple/biobb-gromacs/ 2025-08-31T12:58:52,275 Fetching project page and analyzing links: https://pypi.org/simple/biobb-gromacs/ 2025-08-31T12:58:52,275 Getting page https://pypi.org/simple/biobb-gromacs/ 2025-08-31T12:58:52,277 Found index url https://pypi.org/simple/ 2025-08-31T12:58:52,510 Fetched page https://pypi.org/simple/biobb-gromacs/ as application/vnd.pypi.simple.v1+json 2025-08-31T12:58:52,516 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/86/a0/f92aeb96c32f5abc4e8642e95ab8248f3105dfde5dd0e89435ae70448607/biobb_gromacs-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7) 2025-08-31T12:58:52,518 Found link https://files.pythonhosted.org/packages/2a/4b/be17e7b27a96404d0f87426fbabd98dde1c97a7b8a1c54d041066c23ccf4/biobb_gromacs-3.8.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.0 2025-08-31T12:58:52,519 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/2e/0e/747bdb6621a1a44e3f02427166092650a9a68398395ca67f2937b15d7f41/biobb_gromacs-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7) 2025-08-31T12:58:52,520 Found link https://files.pythonhosted.org/packages/ea/60/3112f633e90ddc93f3db9c2f4e9e4e3eb1100e3a09c87afbfc7abda281a8/biobb_gromacs-3.8.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.1 2025-08-31T12:58:52,521 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/05/a4/d455ddd59bf78a5737d5d259f73dfd02c519a3e283039a8e017a09f1cfa0/biobb_gromacs-3.9.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10) 2025-08-31T12:58:52,523 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10) 2025-08-31T12:58:52,524 Skipping link: 3.9.0 Requires-Python >=3.7,<3.10: https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10) 2025-08-31T12:58:52,525 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/21/48/4004837530aeaa5b0355627b3d5bde2d1ecaec3f03e10c6251df81d26543/biobb_gromacs-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10) 2025-08-31T12:58:52,527 Link requires a different Python (3.11.2 not in: '>=3.7,<=3.10'): https://files.pythonhosted.org/packages/35/4e/cb24d7828d758e84bc9b4264303238d2372c7daf6081a88efce3e7e0f316/biobb_gromacs-4.0.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10) 2025-08-31T12:58:52,529 Skipping link: 4.0.0 Requires-Python >=3.7,<=3.10: https://files.pythonhosted.org/packages/35/4e/cb24d7828d758e84bc9b4264303238d2372c7daf6081a88efce3e7e0f316/biobb_gromacs-4.0.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10) 2025-08-31T12:58:52,530 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/7c/12/2f616a3f4236c15346886c35c7001f657ac2dcf00cd0787d3660abaf91fe/biobb_gromacs-4.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8) 2025-08-31T12:58:52,531 Found link https://files.pythonhosted.org/packages/a1/8e/a64eb1d1994ab01a2c561aa9b4c10aecbcbee823304e8fb9e8dc91ed0d68/biobb_gromacs-4.1.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8), version: 4.1.0 2025-08-31T12:58:52,532 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/83/29/ba77b856d70014284b072f30499704544fff363802a87e370306e0076e2d/biobb_gromacs-4.1.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8) 2025-08-31T12:58:52,533 Found link https://files.pythonhosted.org/packages/e0/93/15b79b6f2e563c079e1407285989e8942a0523b53a2234033cb9b60d5324/biobb_gromacs-4.1.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8), version: 4.1.1 2025-08-31T12:58:52,534 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/92/36/bb026e676c4c3f89143726c5e147df3a93cc51ad64991be78deeb6f5e1ea/biobb_gromacs-4.2.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8) 2025-08-31T12:58:52,534 Found link https://files.pythonhosted.org/packages/77/64/e76a7729998be35d6332beb40024d7e2a1e4f104ec31cbabafdbf7c0dd7c/biobb_gromacs-4.2.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8), version: 4.2.0 2025-08-31T12:58:52,535 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/3d/77/54af43bdff43a41844e21972a53a00e29cc6494beff4daf6a232faf4f422/biobb_gromacs-5.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9) 2025-08-31T12:58:52,536 Found link https://files.pythonhosted.org/packages/da/cd/75fa22e6eeb7622bce04a5468bddc39a687a8fb0a0315e716210f390d8a1/biobb_gromacs-5.0.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9), version: 5.0.0 2025-08-31T12:58:52,537 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/27/ae/18cf98eecaefaf0ad33b170333b0d855733e0722e48ca721941a8eadb525/biobb_gromacs-5.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9) 2025-08-31T12:58:52,537 Found link https://files.pythonhosted.org/packages/76/aa/314fa0f16db514b438450b97bdac627959f5d8e458480849023b06bb7b31/biobb_gromacs-5.1.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9), version: 5.1.0 2025-08-31T12:58:52,538 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/54/5a/9a9f893a8a031cdbdf327c4c9af1c28058b4bf3cd8fd0cbdb9409b7b63d8/biobb_gromacs-5.1.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9) 2025-08-31T12:58:52,539 Found link https://files.pythonhosted.org/packages/44/c1/ec968234df3ffb99e4e013c9f6d20635fb9507bed0aaa2a89716e97146ff/biobb_gromacs-5.1.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9), version: 5.1.1 2025-08-31T12:58:52,540 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-gromacs/ 2025-08-31T12:58:52,541 Getting page https://www.piwheels.org/simple/biobb-gromacs/ 2025-08-31T12:58:52,542 Found index url https://www.piwheels.org/simple/ 2025-08-31T12:58:52,733 Fetched page https://www.piwheels.org/simple/biobb-gromacs/ as text/html 2025-08-31T12:58:52,737 Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-5.1.0-py3-none-any.whl#sha256=2b2ef4c5974296a1ed89f590951484d8d07212fa3d2202f5cb8756f5fe8fc932 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.9) 2025-08-31T12:58:52,738 Skipping link: No binaries permitted for biobb-gromacs: https://archive1.piwheels.org/simple/biobb-gromacs/biobb_gromacs-5.0.0-py3-none-any.whl#sha256=6e23bb6788b797738f24deb4ce3b46c1a7f8b2b8bee7014c98e27cd590885773 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.9) 2025-08-31T12:58:52,739 Skipping link: No binaries permitted for biobb-gromacs: https://archive1.piwheels.org/simple/biobb-gromacs/biobb_gromacs-4.2.0-py3-none-any.whl#sha256=73bef6e699a1e9bcbaf39b5ad568be326cd5dff5ff5a5676a2891b5051f67995 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.8) 2025-08-31T12:58:52,741 Skipping link: No binaries permitted for biobb-gromacs: https://archive1.piwheels.org/simple/biobb-gromacs/biobb_gromacs-4.1.1-py3-none-any.whl#sha256=6f8780d0f7ce59dfd9fe3d28ae798d2435fa67c832f9099846ee2d4129ab3edf (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.8) 2025-08-31T12:58:52,742 Skipping link: No binaries permitted for biobb-gromacs: https://archive1.piwheels.org/simple/biobb-gromacs/biobb_gromacs-4.1.0-py3-none-any.whl#sha256=d564543e13ad745f780c6cf0d622b4fd306acfa5ff43ca2c3a7c673d548995ce (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.8) 2025-08-31T12:58:52,743 Skipping link: No binaries permitted for biobb-gromacs: https://archive1.piwheels.org/simple/biobb-gromacs/biobb_gromacs-4.0.0-py3-none-any.whl#sha256=00be99495c4d1a3f70e885bd0cb38842008213f1dfc171b1fbfa7d151023622b (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10) 2025-08-31T12:58:52,744 Skipping link: No binaries permitted for biobb-gromacs: https://archive1.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.9.0-py3-none-any.whl#sha256=e1c466d044d7e03844c9ce91c981d715f42706f993e4307cd4a2c3fefe057200 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10) 2025-08-31T12:58:52,745 Skipping link: No binaries permitted for biobb-gromacs: https://archive1.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.8.1-py3-none-any.whl#sha256=dc62def4ee04dacfa7a29ad52d42e1fa4c563b5ce844e1ae8f55221271bf2382 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7) 2025-08-31T12:58:52,745 Skipping link: No binaries permitted for biobb-gromacs: https://archive1.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.8.0-py3-none-any.whl#sha256=7add16113788a2a933020f11c3ee9750cca1751c59ff4805bf3cc10ad2088928 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7) 2025-08-31T12:58:52,746 Skipping link: not a file: https://www.piwheels.org/simple/biobb-gromacs/ 2025-08-31T12:58:52,748 Skipping link: not a file: https://pypi.org/simple/biobb-gromacs/ 2025-08-31T12:58:52,772 Given no hashes to check 1 links for project 'biobb-gromacs': discarding no candidates 2025-08-31T12:58:52,775 Collecting biobb-gromacs==5.1.1 2025-08-31T12:58:52,777 Created temporary directory: /tmp/pip-unpack-8csnapi8 2025-08-31T12:58:53,007 Downloading biobb_gromacs-5.1.1.tar.gz (32 kB) 2025-08-31T12:58:53,102 Added biobb-gromacs==5.1.1 from https://files.pythonhosted.org/packages/44/c1/ec968234df3ffb99e4e013c9f6d20635fb9507bed0aaa2a89716e97146ff/biobb_gromacs-5.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-qin90y8s' 2025-08-31T12:58:53,105 Running setup.py (path:/tmp/pip-wheel-p8fiz7lx/biobb-gromacs_c4435e3a28fb47d58cd633a1c234dbde/setup.py) egg_info for package biobb-gromacs 2025-08-31T12:58:53,106 Created temporary directory: /tmp/pip-pip-egg-info-5a7fawjo 2025-08-31T12:58:53,107 Preparing metadata (setup.py): started 2025-08-31T12:58:53,109 Running command python setup.py egg_info 2025-08-31T12:58:54,012 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-31T12:58:54,012 !! 2025-08-31T12:58:54,013 ******************************************************************************** 2025-08-31T12:58:54,014 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-31T12:58:54,015 License :: OSI Approved :: Apache Software License 2025-08-31T12:58:54,017 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-31T12:58:54,018 ******************************************************************************** 2025-08-31T12:58:54,020 !! 2025-08-31T12:58:54,021 self._finalize_license_expression() 2025-08-31T12:58:54,049 running egg_info 2025-08-31T12:58:54,078 creating /tmp/pip-pip-egg-info-5a7fawjo/biobb_gromacs.egg-info 2025-08-31T12:58:54,078 writing /tmp/pip-pip-egg-info-5a7fawjo/biobb_gromacs.egg-info/PKG-INFO 2025-08-31T12:58:54,082 writing dependency_links to /tmp/pip-pip-egg-info-5a7fawjo/biobb_gromacs.egg-info/dependency_links.txt 2025-08-31T12:58:54,083 writing entry points to /tmp/pip-pip-egg-info-5a7fawjo/biobb_gromacs.egg-info/entry_points.txt 2025-08-31T12:58:54,085 writing requirements to /tmp/pip-pip-egg-info-5a7fawjo/biobb_gromacs.egg-info/requires.txt 2025-08-31T12:58:54,086 writing top-level names to /tmp/pip-pip-egg-info-5a7fawjo/biobb_gromacs.egg-info/top_level.txt 2025-08-31T12:58:54,087 writing manifest file '/tmp/pip-pip-egg-info-5a7fawjo/biobb_gromacs.egg-info/SOURCES.txt' 2025-08-31T12:58:54,181 reading manifest file '/tmp/pip-pip-egg-info-5a7fawjo/biobb_gromacs.egg-info/SOURCES.txt' 2025-08-31T12:58:54,182 adding license file 'LICENSE' 2025-08-31T12:58:54,185 writing manifest file '/tmp/pip-pip-egg-info-5a7fawjo/biobb_gromacs.egg-info/SOURCES.txt' 2025-08-31T12:58:54,291 Preparing metadata (setup.py): finished with status 'done' 2025-08-31T12:58:54,295 Source in /tmp/pip-wheel-p8fiz7lx/biobb-gromacs_c4435e3a28fb47d58cd633a1c234dbde has version 5.1.1, which satisfies requirement biobb-gromacs==5.1.1 from https://files.pythonhosted.org/packages/44/c1/ec968234df3ffb99e4e013c9f6d20635fb9507bed0aaa2a89716e97146ff/biobb_gromacs-5.1.1.tar.gz 2025-08-31T12:58:54,296 Removed biobb-gromacs==5.1.1 from https://files.pythonhosted.org/packages/44/c1/ec968234df3ffb99e4e013c9f6d20635fb9507bed0aaa2a89716e97146ff/biobb_gromacs-5.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-qin90y8s' 2025-08-31T12:58:54,302 Created temporary directory: /tmp/pip-unpack-9djirl92 2025-08-31T12:58:54,303 Created temporary directory: /tmp/pip-unpack-7iitfmfg 2025-08-31T12:58:54,304 Building wheels for collected packages: biobb-gromacs 2025-08-31T12:58:54,308 Created temporary directory: /tmp/pip-wheel-pk29rhcq 2025-08-31T12:58:54,309 DEPRECATION: Building 'biobb-gromacs' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biobb-gromacs'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-08-31T12:58:54,310 Building wheel for biobb-gromacs (setup.py): started 2025-08-31T12:58:54,312 Destination directory: /tmp/pip-wheel-pk29rhcq 2025-08-31T12:58:54,312 Running command python setup.py bdist_wheel 2025-08-31T12:58:55,149 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-31T12:58:55,149 !! 2025-08-31T12:58:55,150 ******************************************************************************** 2025-08-31T12:58:55,151 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-31T12:58:55,152 License :: OSI Approved :: Apache Software License 2025-08-31T12:58:55,153 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-31T12:58:55,154 ******************************************************************************** 2025-08-31T12:58:55,155 !! 2025-08-31T12:58:55,156 self._finalize_license_expression() 2025-08-31T12:58:55,156 running bdist_wheel 2025-08-31T12:58:55,292 running build 2025-08-31T12:58:55,293 running build_py 2025-08-31T12:58:55,324 creating build/lib/biobb_gromacs 2025-08-31T12:58:55,327 copying biobb_gromacs/__init__.py -> build/lib/biobb_gromacs 2025-08-31T12:58:55,330 creating build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,331 copying biobb_gromacs/gromacs/solvate.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,334 copying biobb_gromacs/gromacs/pdb2gmx.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,337 copying biobb_gromacs/gromacs/gmxselect.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,340 copying biobb_gromacs/gromacs/__init__.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,342 copying biobb_gromacs/gromacs/grompp.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,345 copying biobb_gromacs/gromacs/grompp_mdrun.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,349 copying biobb_gromacs/gromacs/genion.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,352 copying biobb_gromacs/gromacs/genrestr.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,354 copying biobb_gromacs/gromacs/make_ndx.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,357 copying biobb_gromacs/gromacs/common.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,360 copying biobb_gromacs/gromacs/editconf.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,363 copying biobb_gromacs/gromacs/mdrun.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,366 copying biobb_gromacs/gromacs/trjcat.py -> build/lib/biobb_gromacs/gromacs 2025-08-31T12:58:55,370 creating build/lib/biobb_gromacs/test 2025-08-31T12:58:55,371 copying biobb_gromacs/test/__init__.py -> build/lib/biobb_gromacs/test 2025-08-31T12:58:55,374 creating build/lib/biobb_gromacs/gromacs_extra 2025-08-31T12:58:55,375 copying biobb_gromacs/gromacs_extra/__init__.py -> build/lib/biobb_gromacs/gromacs_extra 2025-08-31T12:58:55,378 copying biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/lib/biobb_gromacs/gromacs_extra 2025-08-31T12:58:55,381 copying biobb_gromacs/gromacs_extra/append_ligand.py -> build/lib/biobb_gromacs/gromacs_extra 2025-08-31T12:58:55,387 copying biobb_gromacs/py.typed -> build/lib/biobb_gromacs 2025-08-31T12:58:55,421 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-08-31T12:58:55,422 !! 2025-08-31T12:58:55,423 ******************************************************************************** 2025-08-31T12:58:55,423 Please avoid running ``setup.py`` directly. 2025-08-31T12:58:55,424 Instead, use pypa/build, pypa/installer or other 2025-08-31T12:58:55,425 standards-based tools. 2025-08-31T12:58:55,426 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-08-31T12:58:55,427 or your builds will no longer be supported. 2025-08-31T12:58:55,428 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-08-31T12:58:55,428 ******************************************************************************** 2025-08-31T12:58:55,430 !! 2025-08-31T12:58:55,430 self.initialize_options() 2025-08-31T12:58:55,455 installing to build/bdist.linux-armv7l/wheel 2025-08-31T12:58:55,455 running install 2025-08-31T12:58:55,481 running install_lib 2025-08-31T12:58:55,509 creating build/bdist.linux-armv7l/wheel 2025-08-31T12:58:55,511 creating build/bdist.linux-armv7l/wheel/biobb_gromacs 2025-08-31T12:58:55,513 creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs 2025-08-31T12:58:55,515 copying build/lib/biobb_gromacs/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,518 copying build/lib/biobb_gromacs/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,520 copying build/lib/biobb_gromacs/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,523 copying build/lib/biobb_gromacs/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,525 copying build/lib/biobb_gromacs/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,529 copying build/lib/biobb_gromacs/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,531 copying build/lib/biobb_gromacs/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,534 copying build/lib/biobb_gromacs/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,537 copying build/lib/biobb_gromacs/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,540 copying build/lib/biobb_gromacs/gromacs/common.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,542 copying build/lib/biobb_gromacs/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,545 copying build/lib/biobb_gromacs/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,548 copying build/lib/biobb_gromacs/gromacs/trjcat.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-08-31T12:58:55,552 creating build/bdist.linux-armv7l/wheel/biobb_gromacs/test 2025-08-31T12:58:55,554 copying build/lib/biobb_gromacs/test/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/test 2025-08-31T12:58:55,556 copying build/lib/biobb_gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs 2025-08-31T12:58:55,558 copying build/lib/biobb_gromacs/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_gromacs 2025-08-31T12:58:55,561 creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra 2025-08-31T12:58:55,562 copying build/lib/biobb_gromacs/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs_extra 2025-08-31T12:58:55,565 copying build/lib/biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs_extra 2025-08-31T12:58:55,568 copying build/lib/biobb_gromacs/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs_extra 2025-08-31T12:58:55,571 running install_egg_info 2025-08-31T12:58:55,610 running egg_info 2025-08-31T12:58:55,639 writing biobb_gromacs.egg-info/PKG-INFO 2025-08-31T12:58:55,642 writing dependency_links to biobb_gromacs.egg-info/dependency_links.txt 2025-08-31T12:58:55,645 writing entry points to biobb_gromacs.egg-info/entry_points.txt 2025-08-31T12:58:55,646 writing requirements to biobb_gromacs.egg-info/requires.txt 2025-08-31T12:58:55,648 writing top-level names to biobb_gromacs.egg-info/top_level.txt 2025-08-31T12:58:55,683 reading manifest file 'biobb_gromacs.egg-info/SOURCES.txt' 2025-08-31T12:58:55,687 adding license file 'LICENSE' 2025-08-31T12:58:55,691 writing manifest file 'biobb_gromacs.egg-info/SOURCES.txt' 2025-08-31T12:58:55,693 Copying biobb_gromacs.egg-info to build/bdist.linux-armv7l/wheel/./biobb_gromacs-5.1.1-py3.11.egg-info 2025-08-31T12:58:55,704 running install_scripts 2025-08-31T12:58:55,719 creating build/bdist.linux-armv7l/wheel/biobb_gromacs-5.1.1.dist-info/WHEEL 2025-08-31T12:58:55,722 creating '/tmp/pip-wheel-pk29rhcq/biobb_gromacs-5.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-08-31T12:58:55,725 adding 'biobb_gromacs/__init__.py' 2025-08-31T12:58:55,727 adding 'biobb_gromacs/py.typed' 2025-08-31T12:58:55,729 adding 'biobb_gromacs/gromacs/__init__.py' 2025-08-31T12:58:55,732 adding 'biobb_gromacs/gromacs/common.py' 2025-08-31T12:58:55,734 adding 'biobb_gromacs/gromacs/editconf.py' 2025-08-31T12:58:55,737 adding 'biobb_gromacs/gromacs/genion.py' 2025-08-31T12:58:55,739 adding 'biobb_gromacs/gromacs/genrestr.py' 2025-08-31T12:58:55,742 adding 'biobb_gromacs/gromacs/gmxselect.py' 2025-08-31T12:58:55,745 adding 'biobb_gromacs/gromacs/grompp.py' 2025-08-31T12:58:55,748 adding 'biobb_gromacs/gromacs/grompp_mdrun.py' 2025-08-31T12:58:55,750 adding 'biobb_gromacs/gromacs/make_ndx.py' 2025-08-31T12:58:55,753 adding 'biobb_gromacs/gromacs/mdrun.py' 2025-08-31T12:58:55,756 adding 'biobb_gromacs/gromacs/pdb2gmx.py' 2025-08-31T12:58:55,758 adding 'biobb_gromacs/gromacs/solvate.py' 2025-08-31T12:58:55,760 adding 'biobb_gromacs/gromacs/trjcat.py' 2025-08-31T12:58:55,762 adding 'biobb_gromacs/gromacs_extra/__init__.py' 2025-08-31T12:58:55,765 adding 'biobb_gromacs/gromacs_extra/append_ligand.py' 2025-08-31T12:58:55,767 adding 'biobb_gromacs/gromacs_extra/ndx2resttop.py' 2025-08-31T12:58:55,769 adding 'biobb_gromacs/test/__init__.py' 2025-08-31T12:58:55,773 adding 'biobb_gromacs-5.1.1.dist-info/licenses/LICENSE' 2025-08-31T12:58:55,775 adding 'biobb_gromacs-5.1.1.dist-info/METADATA' 2025-08-31T12:58:55,776 adding 'biobb_gromacs-5.1.1.dist-info/WHEEL' 2025-08-31T12:58:55,778 adding 'biobb_gromacs-5.1.1.dist-info/entry_points.txt' 2025-08-31T12:58:55,779 adding 'biobb_gromacs-5.1.1.dist-info/top_level.txt' 2025-08-31T12:58:55,781 adding 'biobb_gromacs-5.1.1.dist-info/RECORD' 2025-08-31T12:58:55,783 removing build/bdist.linux-armv7l/wheel 2025-08-31T12:58:55,899 Building wheel for biobb-gromacs (setup.py): finished with status 'done' 2025-08-31T12:58:55,902 Created wheel for biobb-gromacs: filename=biobb_gromacs-5.1.1-py3-none-any.whl size=56716 sha256=d49fdc6b5755e37333158870f6ddc8f33d393780b79a64dd9af96ba10b3eb0fc 2025-08-31T12:58:55,903 Stored in directory: /tmp/pip-ephem-wheel-cache-_iubrcix/wheels/2a/6c/72/5b5843b5a4ce96c63875dafb13c7571ea6ced27fa03e0f1900 2025-08-31T12:58:55,916 Successfully built biobb-gromacs 2025-08-31T12:58:55,922 Removed build tracker: '/tmp/pip-build-tracker-qin90y8s'