2025-08-31T14:07:49,968 Created temporary directory: /tmp/pip-build-tracker-_ncs3kpc 2025-08-31T14:07:49,970 Initialized build tracking at /tmp/pip-build-tracker-_ncs3kpc 2025-08-31T14:07:49,970 Created build tracker: /tmp/pip-build-tracker-_ncs3kpc 2025-08-31T14:07:49,970 Entered build tracker: /tmp/pip-build-tracker-_ncs3kpc 2025-08-31T14:07:49,971 Created temporary directory: /tmp/pip-wheel-26x183fr 2025-08-31T14:07:49,975 Created temporary directory: /tmp/pip-ephem-wheel-cache-fxwmqq88 2025-08-31T14:07:50,022 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-08-31T14:07:50,024 2 location(s) to search for versions of biobb-adapters: 2025-08-31T14:07:50,024 * https://pypi.org/simple/biobb-adapters/ 2025-08-31T14:07:50,024 * https://www.piwheels.org/simple/biobb-adapters/ 2025-08-31T14:07:50,025 Fetching project page and analyzing links: https://pypi.org/simple/biobb-adapters/ 2025-08-31T14:07:50,025 Getting page https://pypi.org/simple/biobb-adapters/ 2025-08-31T14:07:50,027 Found index url https://pypi.org/simple/ 2025-08-31T14:07:50,174 Fetched page https://pypi.org/simple/biobb-adapters/ as application/vnd.pypi.simple.v1+json 2025-08-31T14:07:50,178 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/6e/48/fa9f1781406343cda29442d0ad67f8fa113f3661c8a62ae599a225e559d6/biobb_adapters-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,179 Found link https://files.pythonhosted.org/packages/ea/47/5763ae5620f550174e112f8231676887f996c7c7bdacb854a46860abf447/biobb_adapters-0.0.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.0.1 2025-08-31T14:07:50,180 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/0f/61/dc32b2bcfb9b1d1c8d79dc96d32671a901cd83acd1b6184772cdef43c920/biobb_adapters-0.1.2-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,180 Found link https://files.pythonhosted.org/packages/3e/05/6809d3f7ea93db6f0bceb198539299a5e33e6315b666d04e6e57568e7f11/biobb_adapters-0.1.2.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.2 2025-08-31T14:07:50,181 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/d8/34/06237256a2caa148311d8093a3f71206668f61b7cd20799b8ecf6563cbce/biobb_adapters-0.1.3-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,182 Found link https://files.pythonhosted.org/packages/cf/8d/f1da413a4007f55934dff4375e5d87d0b0f8fb7d84c1062157948f4392c9/biobb_adapters-0.1.3.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.3 2025-08-31T14:07:50,182 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/10/82/a1f366057fb6d101117ace12799cda70ce00ea9c76277d2c8e08e2fafc14/biobb_adapters-0.1.4-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,183 Found link https://files.pythonhosted.org/packages/fc/71/7d6174c4c56a7b38322a5a99c1d72c4f6b1115106508a887fbbda63e30d4/biobb_adapters-0.1.4.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.4 2025-08-31T14:07:50,184 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/af/fd/491ede12a15215794041755b568998a5ff3e8c2e1e8df7b5cec044dcdc6e/biobb_adapters-3.6.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,184 Found link https://files.pythonhosted.org/packages/d4/8e/89622b96a2f6255ba0313fb1eaf264343e3c7c1c2e2bcbb0544b990d32bc/biobb_adapters-3.6.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.0 2025-08-31T14:07:50,185 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/76/dc/444595a3497f5b5e9220cfb8c683abb044a799aa63249e69fa1c8c46c51b/biobb_adapters-3.6.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,186 Found link https://files.pythonhosted.org/packages/1c/c1/1cb78ece834741799903f6eac3dd0035297ff1c7cbb75f391ec9d5edd95b/biobb_adapters-3.6.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.1 2025-08-31T14:07:50,186 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/ba/21/064ebc456bb946b0e94829c80dfd6adc302bc65cf2d4eb774a5a1da47d90/biobb_adapters-3.7.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,187 Found link https://files.pythonhosted.org/packages/8d/bd/df127a6c4c110ffd8e6cf6a5a186fb0ddd180f7fd15f3283f5588834a605/biobb_adapters-3.7.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.7.0 2025-08-31T14:07:50,187 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/48/da/7e3fc1435ec04371f16bcc6c8d39f0b4c5c74195d1847a07862f23aa5c59/biobb_adapters-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-08-31T14:07:50,188 Found link https://files.pythonhosted.org/packages/9c/cc/757e3378f55f0e6de3c20e924e551493315d7be28a5c304397faf993bab3/biobb_adapters-3.8.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.0 2025-08-31T14:07:50,189 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/cb/e7/5a1b54a0aecde3bf2fb8f891afba3f75349a0d2b0941b7984d15b06cf0e5/biobb_adapters-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-08-31T14:07:50,189 Found link https://files.pythonhosted.org/packages/50/7a/7ce78a35dfc275fa95aaa96e3f52ff9bb12ccb5d6c47697439aa4ea737ae/biobb_adapters-3.8.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.1 2025-08-31T14:07:50,190 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/8b/ae/17f6e16c46b7e6ef350f695a2b4403b28df876ec5ffb821925132737dc45/biobb_adapters-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-08-31T14:07:50,191 Link requires a different Python (3.11.2 not in: '>=3.7,<=3.10'): https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-08-31T14:07:50,192 Skipping link: 4.0.0 Requires-Python >=3.7,<=3.10: https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-08-31T14:07:50,193 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/e2/9f/7e9855633ce80e59ec2733606467433ea96f114bd5e848013f81eb3ace9e/biobb_adapters-5.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9) 2025-08-31T14:07:50,194 Found link https://files.pythonhosted.org/packages/34/f9/4f960faa0ca763adb38734777f9133c31dd5d3df72379759905f024964c1/biobb_adapters-5.1.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9), version: 5.1.0 2025-08-31T14:07:50,195 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/4d/61/3db95cd03e19560c8b66f731352f4b05e4675862e5b7bf5b63a48f5965e6/biobb_adapters-5.1.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9) 2025-08-31T14:07:50,195 Found link https://files.pythonhosted.org/packages/8e/d7/2458662f9c7829a77f10314b5ea188d9e7c320e8cb54442c718a09c3a6b1/biobb_adapters-5.1.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9), version: 5.1.1 2025-08-31T14:07:50,196 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-adapters/ 2025-08-31T14:07:50,197 Getting page https://www.piwheels.org/simple/biobb-adapters/ 2025-08-31T14:07:50,198 Found index url https://www.piwheels.org/simple/ 2025-08-31T14:07:50,367 Fetched page https://www.piwheels.org/simple/biobb-adapters/ as text/html 2025-08-31T14:07:50,370 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-5.1.0-py3-none-any.whl#sha256=3da56d6d85f10b70181e1528e87acf2ffffe23814eae39e3db91262d42166fbd (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.9,<=3.12) 2025-08-31T14:07:50,371 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-4.0.0-py3-none-any.whl#sha256=cb9dd142294b4d6a6c6a16e59ad3af487d4f7907e1e521d4ee451a71dbb75811 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-08-31T14:07:50,371 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.8.1-py3-none-any.whl#sha256=7a3438d481b9100a9515c17f6a2c639a03c777ef4bfcf0cf98a0402e52e7361e (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-08-31T14:07:50,371 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.8.0-py3-none-any.whl#sha256=b292fb32ccd27073b7e6361b3aba9b76a5c482a106f56dab11448ab7f34019e2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-08-31T14:07:50,372 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.7.0-py3-none-any.whl#sha256=87c2d259b7048ea5f5b42b1af9b4ec0ebeea79a3bf75d12b74e150a6912939ec (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,372 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.1-py3-none-any.whl#sha256=8260317060e532fea600980ac833bd79b07ac5df283349b573221a8a7c732506 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,373 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.0-py3-none-any.whl#sha256=deec3d977dc1d2088be8a28197d1bd98650e1baba87d45b5d2ef7fed41fa671c (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,374 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.4-py3-none-any.whl#sha256=f26f2aaffd33d22a606ba569276dcfd04bce56a2e8ab8e382acc2646b01f3a85 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,374 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.3-py3-none-any.whl#sha256=3d9b62abc78a28b54c050954fd6ee0e3a1fed164a3d3b8d6eadadd0b25b775d2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,375 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.2-py3-none-any.whl#sha256=0acb06de199e0ac06376a0ffe5e2071445ee7a36fce431a17edc27fdf218492d (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,376 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.0.1-py3-none-any.whl#sha256=cf710e8eb6bc1256248c69baea53ce2727fc707766e31bcf25fc9b9cfe66745a (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-08-31T14:07:50,376 Skipping link: not a file: https://www.piwheels.org/simple/biobb-adapters/ 2025-08-31T14:07:50,377 Skipping link: not a file: https://pypi.org/simple/biobb-adapters/ 2025-08-31T14:07:50,395 Given no hashes to check 1 links for project 'biobb-adapters': discarding no candidates 2025-08-31T14:07:50,397 Collecting biobb-adapters==5.1.1 2025-08-31T14:07:50,399 Created temporary directory: /tmp/pip-unpack-bxspfc9g 2025-08-31T14:07:50,618 Downloading biobb_adapters-5.1.1.tar.gz (100 kB) 2025-08-31T14:07:51,540 Added biobb-adapters==5.1.1 from https://files.pythonhosted.org/packages/8e/d7/2458662f9c7829a77f10314b5ea188d9e7c320e8cb54442c718a09c3a6b1/biobb_adapters-5.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-_ncs3kpc' 2025-08-31T14:07:51,541 Running setup.py (path:/tmp/pip-wheel-26x183fr/biobb-adapters_5cccff62406a4408b724b1a4cfc8816a/setup.py) egg_info for package biobb-adapters 2025-08-31T14:07:51,542 Created temporary directory: /tmp/pip-pip-egg-info-im0l_12k 2025-08-31T14:07:51,542 Preparing metadata (setup.py): started 2025-08-31T14:07:51,544 Running command python setup.py egg_info 2025-08-31T14:07:52,090 Warning: 'classifiers' should be a list, got type 'tuple' 2025-08-31T14:07:52,378 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-31T14:07:52,379 !! 2025-08-31T14:07:52,380 ******************************************************************************** 2025-08-31T14:07:52,380 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-31T14:07:52,381 License :: OSI Approved :: Apache Software License 2025-08-31T14:07:52,382 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-31T14:07:52,383 ******************************************************************************** 2025-08-31T14:07:52,384 !! 2025-08-31T14:07:52,385 self._finalize_license_expression() 2025-08-31T14:07:52,406 running egg_info 2025-08-31T14:07:52,433 creating /tmp/pip-pip-egg-info-im0l_12k/biobb_adapters.egg-info 2025-08-31T14:07:52,434 writing /tmp/pip-pip-egg-info-im0l_12k/biobb_adapters.egg-info/PKG-INFO 2025-08-31T14:07:52,437 writing dependency_links to /tmp/pip-pip-egg-info-im0l_12k/biobb_adapters.egg-info/dependency_links.txt 2025-08-31T14:07:52,439 writing requirements to /tmp/pip-pip-egg-info-im0l_12k/biobb_adapters.egg-info/requires.txt 2025-08-31T14:07:52,440 writing top-level names to /tmp/pip-pip-egg-info-im0l_12k/biobb_adapters.egg-info/top_level.txt 2025-08-31T14:07:52,442 writing manifest file '/tmp/pip-pip-egg-info-im0l_12k/biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T14:07:52,577 reading manifest file '/tmp/pip-pip-egg-info-im0l_12k/biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T14:07:52,578 reading manifest template 'MANIFEST.in' 2025-08-31T14:07:52,691 adding license file 'LICENSE' 2025-08-31T14:07:52,709 writing manifest file '/tmp/pip-pip-egg-info-im0l_12k/biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T14:07:52,814 Preparing metadata (setup.py): finished with status 'done' 2025-08-31T14:07:52,819 Source in /tmp/pip-wheel-26x183fr/biobb-adapters_5cccff62406a4408b724b1a4cfc8816a has version 5.1.1, which satisfies requirement biobb-adapters==5.1.1 from https://files.pythonhosted.org/packages/8e/d7/2458662f9c7829a77f10314b5ea188d9e7c320e8cb54442c718a09c3a6b1/biobb_adapters-5.1.1.tar.gz 2025-08-31T14:07:52,820 Removed biobb-adapters==5.1.1 from https://files.pythonhosted.org/packages/8e/d7/2458662f9c7829a77f10314b5ea188d9e7c320e8cb54442c718a09c3a6b1/biobb_adapters-5.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-_ncs3kpc' 2025-08-31T14:07:52,826 Created temporary directory: /tmp/pip-unpack-mn4dsnnn 2025-08-31T14:07:52,828 Created temporary directory: /tmp/pip-unpack-f6u7oj39 2025-08-31T14:07:52,828 Building wheels for collected packages: biobb-adapters 2025-08-31T14:07:52,832 Created temporary directory: /tmp/pip-wheel-5p45o1qr 2025-08-31T14:07:52,833 DEPRECATION: Building 'biobb-adapters' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biobb-adapters'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-08-31T14:07:52,835 Building wheel for biobb-adapters (setup.py): started 2025-08-31T14:07:52,836 Destination directory: /tmp/pip-wheel-5p45o1qr 2025-08-31T14:07:52,837 Running command python setup.py bdist_wheel 2025-08-31T14:07:53,382 Warning: 'classifiers' should be a list, got type 'tuple' 2025-08-31T14:07:53,669 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-31T14:07:53,670 !! 2025-08-31T14:07:53,671 ******************************************************************************** 2025-08-31T14:07:53,672 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-31T14:07:53,673 License :: OSI Approved :: Apache Software License 2025-08-31T14:07:53,674 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-31T14:07:53,674 ******************************************************************************** 2025-08-31T14:07:53,675 !! 2025-08-31T14:07:53,676 self._finalize_license_expression() 2025-08-31T14:07:53,676 running bdist_wheel 2025-08-31T14:07:53,807 running build 2025-08-31T14:07:53,807 running build_py 2025-08-31T14:07:53,837 creating build/lib/biobb_adapters 2025-08-31T14:07:53,840 copying biobb_adapters/__init__.py -> build/lib/biobb_adapters 2025-08-31T14:07:53,843 creating build/lib/biobb_adapters/pycompss 2025-08-31T14:07:53,844 copying biobb_adapters/pycompss/__init__.py -> build/lib/biobb_adapters/pycompss 2025-08-31T14:07:53,846 creating build/lib/biobb_adapters/pycompss/biobb_cmip 2025-08-31T14:07:53,847 copying biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip 2025-08-31T14:07:53,849 creating build/lib/biobb_adapters/pycompss/biobb_ml 2025-08-31T14:07:53,850 copying biobb_adapters/pycompss/biobb_ml/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml 2025-08-31T14:07:53,852 creating build/lib/biobb_adapters/pycompss/biobb_pmx 2025-08-31T14:07:53,853 copying biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx 2025-08-31T14:07:53,855 creating build/lib/biobb_adapters/pycompss/biobb_vs 2025-08-31T14:07:53,856 copying biobb_adapters/pycompss/biobb_vs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs 2025-08-31T14:07:53,859 creating build/lib/biobb_adapters/pycompss/biobb_chemistry 2025-08-31T14:07:53,860 copying biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry 2025-08-31T14:07:53,862 creating build/lib/biobb_adapters/pycompss/biobb_commons 2025-08-31T14:07:53,863 copying biobb_adapters/pycompss/biobb_commons/task_config.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2025-08-31T14:07:53,865 copying biobb_adapters/pycompss/biobb_commons/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2025-08-31T14:07:53,867 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils 2025-08-31T14:07:53,868 copying biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils 2025-08-31T14:07:53,870 creating build/lib/biobb_adapters/pycompss/biobb_analysis 2025-08-31T14:07:53,871 copying biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis 2025-08-31T14:07:53,873 creating build/lib/biobb_adapters/pycompss/biobb_md 2025-08-31T14:07:53,874 copying biobb_adapters/pycompss/biobb_md/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md 2025-08-31T14:07:53,876 creating build/lib/biobb_adapters/pycompss/biobb_io 2025-08-31T14:07:53,877 copying biobb_adapters/pycompss/biobb_io/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io 2025-08-31T14:07:53,880 creating build/lib/biobb_adapters/pycompss/biobb_model 2025-08-31T14:07:53,881 copying biobb_adapters/pycompss/biobb_model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model 2025-08-31T14:07:53,882 creating build/lib/biobb_adapters/pycompss/biobb_amber 2025-08-31T14:07:53,883 copying biobb_adapters/pycompss/biobb_amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber 2025-08-31T14:07:53,886 creating build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,887 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_titration.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,889 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_run.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,891 copying biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,892 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,894 copying biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,896 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_ignore_residues.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,898 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,900 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,901 copying biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,903 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_structure.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,905 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:53,907 creating build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:53,909 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:53,911 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:53,912 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:53,914 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:53,917 creating build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:53,918 copying biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:53,920 copying biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:53,922 copying biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:53,923 copying biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:53,925 copying biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:53,927 copying biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:53,929 copying biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:53,931 copying biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:53,933 creating build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:53,934 copying biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:53,936 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:53,938 copying biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:53,940 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:53,942 copying biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:53,944 copying biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:53,945 copying biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:53,948 creating build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:53,949 copying biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:53,951 copying biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:53,954 copying biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:53,956 copying biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:53,958 copying biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:53,960 creating build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:53,961 copying biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:53,963 copying biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:53,965 copying biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:53,967 copying biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:53,969 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:53,971 copying biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:53,972 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:53,974 copying biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:53,977 creating build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:53,978 copying biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:53,980 copying biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:53,982 copying biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:53,983 copying biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:53,986 creating build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:53,986 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:53,989 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:53,991 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:53,992 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:53,994 copying biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:53,996 copying biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:53,997 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:53,999 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:54,001 copying biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:54,004 creating build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,005 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,007 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,008 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,010 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,012 copying biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,014 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,016 copying biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,017 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,019 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,021 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,023 copying biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,025 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:54,027 creating build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:54,028 copying biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:54,030 copying biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:54,032 copying biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:54,034 copying biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:54,036 copying biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:54,038 creating build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T14:07:54,039 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T14:07:54,041 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T14:07:54,043 copying biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T14:07:54,045 creating build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:54,046 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:54,047 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:54,049 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:54,052 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:54,054 copying biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:54,057 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:54,059 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:54,063 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:54,067 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:54,103 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:54,108 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:54,114 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,117 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,123 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,129 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,134 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,174 copying biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,178 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,181 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,184 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,186 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:54,197 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,201 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,203 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,205 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,206 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,208 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,210 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,212 copying biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,213 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,215 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,217 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:54,220 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,221 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,223 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,224 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,226 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,228 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,229 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,231 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,233 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,234 copying biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,236 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,238 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,240 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,242 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,244 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,246 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,248 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,250 copying biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,252 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,254 copying biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,256 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,258 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,260 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,262 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,264 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,265 copying biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,267 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,269 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:54,272 creating build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,273 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,275 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,276 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,278 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,280 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,282 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,284 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,286 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,287 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,289 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,291 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,293 copying biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,295 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,296 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,298 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,300 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,301 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:54,304 creating build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,305 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,307 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,308 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,310 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,312 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,313 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,315 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,316 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,318 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,320 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,322 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,323 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,325 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,327 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,329 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,331 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,332 copying biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,334 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,336 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,338 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,339 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,341 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,343 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,344 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,346 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:54,348 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,349 copying biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,351 copying biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,353 copying biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,355 copying biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,357 copying biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,358 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,360 copying biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,362 copying biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,363 copying biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,366 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,368 copying biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:54,371 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:54,372 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:54,374 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:54,376 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:54,377 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:54,379 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:54,382 creating build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,383 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,385 copying biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,387 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,389 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,390 copying biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,392 copying biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,394 copying biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,395 copying biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,397 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,399 copying biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,400 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,402 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,404 copying biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,405 copying biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,407 copying biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,409 copying biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,410 copying biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,412 copying biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,414 copying biobb_adapters/pycompss/biobb_io/api/mddb.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,416 copying biobb_adapters/pycompss/biobb_io/api/alphafold.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,418 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:54,421 creating build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,422 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,425 copying biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,427 copying biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,429 copying biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,431 copying biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,434 copying biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,436 copying biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,438 copying biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,440 copying biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,442 copying biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,445 copying biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,447 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:54,449 creating build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T14:07:54,450 copying biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T14:07:54,453 copying biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T14:07:54,455 creating build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T14:07:54,456 copying biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T14:07:54,459 copying biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T14:07:54,462 creating build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T14:07:54,464 copying biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T14:07:54,466 copying biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T14:07:54,469 copying biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T14:07:54,471 creating build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T14:07:54,472 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T14:07:54,474 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T14:07:54,477 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T14:07:54,479 creating build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T14:07:54,480 copying biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T14:07:54,483 copying biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T14:07:54,485 creating build/lib/biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T14:07:54,487 copying biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T14:07:54,489 copying biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T14:07:54,491 creating build/lib/biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T14:07:54,492 copying biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T14:07:54,495 copying biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T14:07:54,498 creating build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:54,499 copying biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:54,501 copying biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:54,504 copying biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:54,506 copying biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:54,508 copying biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:54,511 creating build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T14:07:54,512 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T14:07:54,514 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T14:07:54,516 copying biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T14:07:54,518 creating build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T14:07:54,520 copying biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T14:07:54,523 copying biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T14:07:54,525 copying biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T14:07:54,527 running egg_info 2025-08-31T14:07:54,558 writing biobb_adapters.egg-info/PKG-INFO 2025-08-31T14:07:54,561 writing dependency_links to biobb_adapters.egg-info/dependency_links.txt 2025-08-31T14:07:54,563 writing requirements to biobb_adapters.egg-info/requires.txt 2025-08-31T14:07:54,565 writing top-level names to biobb_adapters.egg-info/top_level.txt 2025-08-31T14:07:54,695 reading manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T14:07:54,729 reading manifest template 'MANIFEST.in' 2025-08-31T14:07:55,157 adding license file 'LICENSE' 2025-08-31T14:07:55,204 writing manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2025-08-31T14:07:55,207 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_amber' is absent from the `packages` configuration. 2025-08-31T14:07:55,208 !! 2025-08-31T14:07:55,209 ******************************************************************************** 2025-08-31T14:07:55,210 ############################ 2025-08-31T14:07:55,211 # Package would be ignored # 2025-08-31T14:07:55,211 ############################ 2025-08-31T14:07:55,212 Python recognizes 'biobb_adapters.cwl.biobb_amber' as an importable package[^1], 2025-08-31T14:07:55,213 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,214 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,215 package, please make sure that 'biobb_adapters.cwl.biobb_amber' is explicitly added 2025-08-31T14:07:55,216 to the `packages` configuration field. 2025-08-31T14:07:55,217 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,217 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,218 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,219 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,220 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,221 If you don't want 'biobb_adapters.cwl.biobb_amber' to be distributed and are 2025-08-31T14:07:55,222 already explicitly excluding 'biobb_adapters.cwl.biobb_amber' via 2025-08-31T14:07:55,222 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,224 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,225 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,227 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,228 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,229 even if it does not contain any `.py` files. 2025-08-31T14:07:55,230 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,231 directory, all directories are treated like packages. 2025-08-31T14:07:55,231 ******************************************************************************** 2025-08-31T14:07:55,232 !! 2025-08-31T14:07:55,232 check.warn(importable) 2025-08-31T14:07:55,233 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_analysis' is absent from the `packages` configuration. 2025-08-31T14:07:55,233 !! 2025-08-31T14:07:55,234 ******************************************************************************** 2025-08-31T14:07:55,235 ############################ 2025-08-31T14:07:55,235 # Package would be ignored # 2025-08-31T14:07:55,236 ############################ 2025-08-31T14:07:55,236 Python recognizes 'biobb_adapters.cwl.biobb_analysis' as an importable package[^1], 2025-08-31T14:07:55,237 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,238 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,238 package, please make sure that 'biobb_adapters.cwl.biobb_analysis' is explicitly added 2025-08-31T14:07:55,238 to the `packages` configuration field. 2025-08-31T14:07:55,239 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,240 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,241 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,242 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,243 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,244 If you don't want 'biobb_adapters.cwl.biobb_analysis' to be distributed and are 2025-08-31T14:07:55,245 already explicitly excluding 'biobb_adapters.cwl.biobb_analysis' via 2025-08-31T14:07:55,246 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,246 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,247 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,248 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,250 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,251 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,251 even if it does not contain any `.py` files. 2025-08-31T14:07:55,252 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,253 directory, all directories are treated like packages. 2025-08-31T14:07:55,253 ******************************************************************************** 2025-08-31T14:07:55,255 !! 2025-08-31T14:07:55,255 check.warn(importable) 2025-08-31T14:07:55,256 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_chemistry' is absent from the `packages` configuration. 2025-08-31T14:07:55,257 !! 2025-08-31T14:07:55,258 ******************************************************************************** 2025-08-31T14:07:55,259 ############################ 2025-08-31T14:07:55,260 # Package would be ignored # 2025-08-31T14:07:55,260 ############################ 2025-08-31T14:07:55,261 Python recognizes 'biobb_adapters.cwl.biobb_chemistry' as an importable package[^1], 2025-08-31T14:07:55,261 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,263 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,263 package, please make sure that 'biobb_adapters.cwl.biobb_chemistry' is explicitly added 2025-08-31T14:07:55,264 to the `packages` configuration field. 2025-08-31T14:07:55,265 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,265 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,265 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,266 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,267 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,268 If you don't want 'biobb_adapters.cwl.biobb_chemistry' to be distributed and are 2025-08-31T14:07:55,268 already explicitly excluding 'biobb_adapters.cwl.biobb_chemistry' via 2025-08-31T14:07:55,269 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,269 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,269 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,270 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,271 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,273 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,273 even if it does not contain any `.py` files. 2025-08-31T14:07:55,274 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,274 directory, all directories are treated like packages. 2025-08-31T14:07:55,275 ******************************************************************************** 2025-08-31T14:07:55,276 !! 2025-08-31T14:07:55,277 check.warn(importable) 2025-08-31T14:07:55,277 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_cmip' is absent from the `packages` configuration. 2025-08-31T14:07:55,278 !! 2025-08-31T14:07:55,279 ******************************************************************************** 2025-08-31T14:07:55,280 ############################ 2025-08-31T14:07:55,280 # Package would be ignored # 2025-08-31T14:07:55,281 ############################ 2025-08-31T14:07:55,282 Python recognizes 'biobb_adapters.cwl.biobb_cmip' as an importable package[^1], 2025-08-31T14:07:55,282 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,283 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,284 package, please make sure that 'biobb_adapters.cwl.biobb_cmip' is explicitly added 2025-08-31T14:07:55,285 to the `packages` configuration field. 2025-08-31T14:07:55,287 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,288 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,289 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,548 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,549 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,550 If you don't want 'biobb_adapters.cwl.biobb_cmip' to be distributed and are 2025-08-31T14:07:55,551 already explicitly excluding 'biobb_adapters.cwl.biobb_cmip' via 2025-08-31T14:07:55,551 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,552 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,553 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,553 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,554 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,555 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,555 even if it does not contain any `.py` files. 2025-08-31T14:07:55,556 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,556 directory, all directories are treated like packages. 2025-08-31T14:07:55,556 ******************************************************************************** 2025-08-31T14:07:55,557 !! 2025-08-31T14:07:55,557 check.warn(importable) 2025-08-31T14:07:55,558 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_cp2k' is absent from the `packages` configuration. 2025-08-31T14:07:55,558 !! 2025-08-31T14:07:55,559 ******************************************************************************** 2025-08-31T14:07:55,559 ############################ 2025-08-31T14:07:55,560 # Package would be ignored # 2025-08-31T14:07:55,560 ############################ 2025-08-31T14:07:55,560 Python recognizes 'biobb_adapters.cwl.biobb_cp2k' as an importable package[^1], 2025-08-31T14:07:55,561 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,562 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,562 package, please make sure that 'biobb_adapters.cwl.biobb_cp2k' is explicitly added 2025-08-31T14:07:55,563 to the `packages` configuration field. 2025-08-31T14:07:55,564 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,564 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,565 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,566 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,567 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,568 If you don't want 'biobb_adapters.cwl.biobb_cp2k' to be distributed and are 2025-08-31T14:07:55,569 already explicitly excluding 'biobb_adapters.cwl.biobb_cp2k' via 2025-08-31T14:07:55,569 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,570 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,570 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,571 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,572 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,573 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,574 even if it does not contain any `.py` files. 2025-08-31T14:07:55,574 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,575 directory, all directories are treated like packages. 2025-08-31T14:07:55,575 ******************************************************************************** 2025-08-31T14:07:55,577 !! 2025-08-31T14:07:55,577 check.warn(importable) 2025-08-31T14:07:55,578 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_dna' is absent from the `packages` configuration. 2025-08-31T14:07:55,578 !! 2025-08-31T14:07:55,580 ******************************************************************************** 2025-08-31T14:07:55,580 ############################ 2025-08-31T14:07:55,580 # Package would be ignored # 2025-08-31T14:07:55,581 ############################ 2025-08-31T14:07:55,581 Python recognizes 'biobb_adapters.cwl.biobb_dna' as an importable package[^1], 2025-08-31T14:07:55,581 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,582 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,582 package, please make sure that 'biobb_adapters.cwl.biobb_dna' is explicitly added 2025-08-31T14:07:55,583 to the `packages` configuration field. 2025-08-31T14:07:55,584 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,584 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,584 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,585 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,586 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,587 If you don't want 'biobb_adapters.cwl.biobb_dna' to be distributed and are 2025-08-31T14:07:55,587 already explicitly excluding 'biobb_adapters.cwl.biobb_dna' via 2025-08-31T14:07:55,587 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,588 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,588 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,589 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,590 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,592 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,593 even if it does not contain any `.py` files. 2025-08-31T14:07:55,593 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,594 directory, all directories are treated like packages. 2025-08-31T14:07:55,594 ******************************************************************************** 2025-08-31T14:07:55,595 !! 2025-08-31T14:07:55,596 check.warn(importable) 2025-08-31T14:07:55,596 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_flexdyn' is absent from the `packages` configuration. 2025-08-31T14:07:55,597 !! 2025-08-31T14:07:55,598 ******************************************************************************** 2025-08-31T14:07:55,598 ############################ 2025-08-31T14:07:55,599 # Package would be ignored # 2025-08-31T14:07:55,599 ############################ 2025-08-31T14:07:55,600 Python recognizes 'biobb_adapters.cwl.biobb_flexdyn' as an importable package[^1], 2025-08-31T14:07:55,600 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,601 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,602 package, please make sure that 'biobb_adapters.cwl.biobb_flexdyn' is explicitly added 2025-08-31T14:07:55,602 to the `packages` configuration field. 2025-08-31T14:07:55,604 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,604 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,605 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,606 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,607 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,608 If you don't want 'biobb_adapters.cwl.biobb_flexdyn' to be distributed and are 2025-08-31T14:07:55,609 already explicitly excluding 'biobb_adapters.cwl.biobb_flexdyn' via 2025-08-31T14:07:55,609 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,610 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,610 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,611 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,612 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,613 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,614 even if it does not contain any `.py` files. 2025-08-31T14:07:55,614 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,615 directory, all directories are treated like packages. 2025-08-31T14:07:55,615 ******************************************************************************** 2025-08-31T14:07:55,616 !! 2025-08-31T14:07:55,617 check.warn(importable) 2025-08-31T14:07:55,618 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_flexserv' is absent from the `packages` configuration. 2025-08-31T14:07:55,618 !! 2025-08-31T14:07:55,619 ******************************************************************************** 2025-08-31T14:07:55,620 ############################ 2025-08-31T14:07:55,620 # Package would be ignored # 2025-08-31T14:07:55,621 ############################ 2025-08-31T14:07:55,621 Python recognizes 'biobb_adapters.cwl.biobb_flexserv' as an importable package[^1], 2025-08-31T14:07:55,622 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,623 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,623 package, please make sure that 'biobb_adapters.cwl.biobb_flexserv' is explicitly added 2025-08-31T14:07:55,624 to the `packages` configuration field. 2025-08-31T14:07:55,625 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,626 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,627 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,628 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,629 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,630 If you don't want 'biobb_adapters.cwl.biobb_flexserv' to be distributed and are 2025-08-31T14:07:55,631 already explicitly excluding 'biobb_adapters.cwl.biobb_flexserv' via 2025-08-31T14:07:55,631 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,632 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,633 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,634 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,635 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,637 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,637 even if it does not contain any `.py` files. 2025-08-31T14:07:55,638 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,639 directory, all directories are treated like packages. 2025-08-31T14:07:55,640 ******************************************************************************** 2025-08-31T14:07:55,641 !! 2025-08-31T14:07:55,641 check.warn(importable) 2025-08-31T14:07:55,642 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_godmd' is absent from the `packages` configuration. 2025-08-31T14:07:55,642 !! 2025-08-31T14:07:55,643 ******************************************************************************** 2025-08-31T14:07:55,644 ############################ 2025-08-31T14:07:55,644 # Package would be ignored # 2025-08-31T14:07:55,644 ############################ 2025-08-31T14:07:55,645 Python recognizes 'biobb_adapters.cwl.biobb_godmd' as an importable package[^1], 2025-08-31T14:07:55,645 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,646 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,647 package, please make sure that 'biobb_adapters.cwl.biobb_godmd' is explicitly added 2025-08-31T14:07:55,647 to the `packages` configuration field. 2025-08-31T14:07:55,648 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,649 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,650 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,651 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,652 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,653 If you don't want 'biobb_adapters.cwl.biobb_godmd' to be distributed and are 2025-08-31T14:07:55,653 already explicitly excluding 'biobb_adapters.cwl.biobb_godmd' via 2025-08-31T14:07:55,654 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,655 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,655 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,657 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,658 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,660 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,660 even if it does not contain any `.py` files. 2025-08-31T14:07:55,661 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,662 directory, all directories are treated like packages. 2025-08-31T14:07:55,662 ******************************************************************************** 2025-08-31T14:07:55,663 !! 2025-08-31T14:07:55,664 check.warn(importable) 2025-08-31T14:07:55,664 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_gromacs' is absent from the `packages` configuration. 2025-08-31T14:07:55,665 !! 2025-08-31T14:07:55,666 ******************************************************************************** 2025-08-31T14:07:55,667 ############################ 2025-08-31T14:07:55,667 # Package would be ignored # 2025-08-31T14:07:55,668 ############################ 2025-08-31T14:07:55,668 Python recognizes 'biobb_adapters.cwl.biobb_gromacs' as an importable package[^1], 2025-08-31T14:07:55,669 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,670 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,671 package, please make sure that 'biobb_adapters.cwl.biobb_gromacs' is explicitly added 2025-08-31T14:07:55,671 to the `packages` configuration field. 2025-08-31T14:07:55,672 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,673 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,673 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,674 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,675 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,676 If you don't want 'biobb_adapters.cwl.biobb_gromacs' to be distributed and are 2025-08-31T14:07:55,676 already explicitly excluding 'biobb_adapters.cwl.biobb_gromacs' via 2025-08-31T14:07:55,677 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,677 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,678 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,679 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,680 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,681 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,682 even if it does not contain any `.py` files. 2025-08-31T14:07:55,682 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,683 directory, all directories are treated like packages. 2025-08-31T14:07:55,684 ******************************************************************************** 2025-08-31T14:07:55,685 !! 2025-08-31T14:07:55,685 check.warn(importable) 2025-08-31T14:07:55,686 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_haddock' is absent from the `packages` configuration. 2025-08-31T14:07:55,686 !! 2025-08-31T14:07:55,688 ******************************************************************************** 2025-08-31T14:07:55,688 ############################ 2025-08-31T14:07:55,689 # Package would be ignored # 2025-08-31T14:07:55,689 ############################ 2025-08-31T14:07:55,690 Python recognizes 'biobb_adapters.cwl.biobb_haddock' as an importable package[^1], 2025-08-31T14:07:55,690 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,691 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,692 package, please make sure that 'biobb_adapters.cwl.biobb_haddock' is explicitly added 2025-08-31T14:07:55,693 to the `packages` configuration field. 2025-08-31T14:07:55,694 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,695 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,695 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,697 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,698 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,699 If you don't want 'biobb_adapters.cwl.biobb_haddock' to be distributed and are 2025-08-31T14:07:55,700 already explicitly excluding 'biobb_adapters.cwl.biobb_haddock' via 2025-08-31T14:07:55,700 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,702 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,703 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,704 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,705 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,705 even if it does not contain any `.py` files. 2025-08-31T14:07:55,706 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,706 directory, all directories are treated like packages. 2025-08-31T14:07:55,707 ******************************************************************************** 2025-08-31T14:07:55,708 !! 2025-08-31T14:07:55,708 check.warn(importable) 2025-08-31T14:07:55,709 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_io' is absent from the `packages` configuration. 2025-08-31T14:07:55,709 !! 2025-08-31T14:07:55,710 ******************************************************************************** 2025-08-31T14:07:55,711 ############################ 2025-08-31T14:07:55,711 # Package would be ignored # 2025-08-31T14:07:55,712 ############################ 2025-08-31T14:07:55,712 Python recognizes 'biobb_adapters.cwl.biobb_io' as an importable package[^1], 2025-08-31T14:07:55,713 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,714 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,714 package, please make sure that 'biobb_adapters.cwl.biobb_io' is explicitly added 2025-08-31T14:07:55,714 to the `packages` configuration field. 2025-08-31T14:07:55,716 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,716 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,717 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,718 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,720 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,721 If you don't want 'biobb_adapters.cwl.biobb_io' to be distributed and are 2025-08-31T14:07:55,722 already explicitly excluding 'biobb_adapters.cwl.biobb_io' via 2025-08-31T14:07:55,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,724 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,725 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,726 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,728 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,728 even if it does not contain any `.py` files. 2025-08-31T14:07:55,729 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,730 directory, all directories are treated like packages. 2025-08-31T14:07:55,730 ******************************************************************************** 2025-08-31T14:07:55,732 !! 2025-08-31T14:07:55,732 check.warn(importable) 2025-08-31T14:07:55,733 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_md' is absent from the `packages` configuration. 2025-08-31T14:07:55,733 !! 2025-08-31T14:07:55,735 ******************************************************************************** 2025-08-31T14:07:55,735 ############################ 2025-08-31T14:07:55,736 # Package would be ignored # 2025-08-31T14:07:55,736 ############################ 2025-08-31T14:07:55,737 Python recognizes 'biobb_adapters.cwl.biobb_md' as an importable package[^1], 2025-08-31T14:07:55,738 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,739 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,740 package, please make sure that 'biobb_adapters.cwl.biobb_md' is explicitly added 2025-08-31T14:07:55,740 to the `packages` configuration field. 2025-08-31T14:07:55,741 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,743 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,744 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,745 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,746 If you don't want 'biobb_adapters.cwl.biobb_md' to be distributed and are 2025-08-31T14:07:55,746 already explicitly excluding 'biobb_adapters.cwl.biobb_md' via 2025-08-31T14:07:55,747 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,748 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,749 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,750 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,752 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,752 even if it does not contain any `.py` files. 2025-08-31T14:07:55,753 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,753 directory, all directories are treated like packages. 2025-08-31T14:07:55,754 ******************************************************************************** 2025-08-31T14:07:55,755 !! 2025-08-31T14:07:55,756 check.warn(importable) 2025-08-31T14:07:55,756 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_mem' is absent from the `packages` configuration. 2025-08-31T14:07:55,757 !! 2025-08-31T14:07:55,758 ******************************************************************************** 2025-08-31T14:07:55,759 ############################ 2025-08-31T14:07:55,759 # Package would be ignored # 2025-08-31T14:07:55,760 ############################ 2025-08-31T14:07:55,760 Python recognizes 'biobb_adapters.cwl.biobb_mem' as an importable package[^1], 2025-08-31T14:07:55,761 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,762 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,763 package, please make sure that 'biobb_adapters.cwl.biobb_mem' is explicitly added 2025-08-31T14:07:55,763 to the `packages` configuration field. 2025-08-31T14:07:55,765 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,765 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,766 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,767 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,769 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,770 If you don't want 'biobb_adapters.cwl.biobb_mem' to be distributed and are 2025-08-31T14:07:55,771 already explicitly excluding 'biobb_adapters.cwl.biobb_mem' via 2025-08-31T14:07:55,771 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,772 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,773 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,774 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,775 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,777 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,777 even if it does not contain any `.py` files. 2025-08-31T14:07:55,778 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,779 directory, all directories are treated like packages. 2025-08-31T14:07:55,779 ******************************************************************************** 2025-08-31T14:07:55,780 !! 2025-08-31T14:07:55,781 check.warn(importable) 2025-08-31T14:07:55,781 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_ml' is absent from the `packages` configuration. 2025-08-31T14:07:55,782 !! 2025-08-31T14:07:55,783 ******************************************************************************** 2025-08-31T14:07:55,784 ############################ 2025-08-31T14:07:55,784 # Package would be ignored # 2025-08-31T14:07:55,785 ############################ 2025-08-31T14:07:55,785 Python recognizes 'biobb_adapters.cwl.biobb_ml' as an importable package[^1], 2025-08-31T14:07:55,786 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,787 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,788 package, please make sure that 'biobb_adapters.cwl.biobb_ml' is explicitly added 2025-08-31T14:07:55,789 to the `packages` configuration field. 2025-08-31T14:07:55,790 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,791 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,792 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,793 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,794 If you don't want 'biobb_adapters.cwl.biobb_ml' to be distributed and are 2025-08-31T14:07:55,795 already explicitly excluding 'biobb_adapters.cwl.biobb_ml' via 2025-08-31T14:07:55,796 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,796 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,797 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,798 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,799 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,801 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,802 even if it does not contain any `.py` files. 2025-08-31T14:07:55,802 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,803 directory, all directories are treated like packages. 2025-08-31T14:07:55,804 ******************************************************************************** 2025-08-31T14:07:55,805 !! 2025-08-31T14:07:55,806 check.warn(importable) 2025-08-31T14:07:55,807 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_model' is absent from the `packages` configuration. 2025-08-31T14:07:55,808 !! 2025-08-31T14:07:55,810 ******************************************************************************** 2025-08-31T14:07:55,811 ############################ 2025-08-31T14:07:55,811 # Package would be ignored # 2025-08-31T14:07:55,812 ############################ 2025-08-31T14:07:55,813 Python recognizes 'biobb_adapters.cwl.biobb_model' as an importable package[^1], 2025-08-31T14:07:55,813 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,814 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,815 package, please make sure that 'biobb_adapters.cwl.biobb_model' is explicitly added 2025-08-31T14:07:55,815 to the `packages` configuration field. 2025-08-31T14:07:55,816 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,817 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,817 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,819 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,820 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,821 If you don't want 'biobb_adapters.cwl.biobb_model' to be distributed and are 2025-08-31T14:07:55,821 already explicitly excluding 'biobb_adapters.cwl.biobb_model' via 2025-08-31T14:07:55,822 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,823 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,823 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,825 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,826 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,828 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,829 even if it does not contain any `.py` files. 2025-08-31T14:07:55,829 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,830 directory, all directories are treated like packages. 2025-08-31T14:07:55,831 ******************************************************************************** 2025-08-31T14:07:55,832 !! 2025-08-31T14:07:55,833 check.warn(importable) 2025-08-31T14:07:55,833 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_pdb_tools' is absent from the `packages` configuration. 2025-08-31T14:07:55,834 !! 2025-08-31T14:07:55,835 ******************************************************************************** 2025-08-31T14:07:55,836 ############################ 2025-08-31T14:07:55,836 # Package would be ignored # 2025-08-31T14:07:55,837 ############################ 2025-08-31T14:07:55,837 Python recognizes 'biobb_adapters.cwl.biobb_pdb_tools' as an importable package[^1], 2025-08-31T14:07:55,838 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,839 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,840 package, please make sure that 'biobb_adapters.cwl.biobb_pdb_tools' is explicitly added 2025-08-31T14:07:55,840 to the `packages` configuration field. 2025-08-31T14:07:55,842 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,842 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,843 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,844 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,845 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,845 If you don't want 'biobb_adapters.cwl.biobb_pdb_tools' to be distributed and are 2025-08-31T14:07:55,846 already explicitly excluding 'biobb_adapters.cwl.biobb_pdb_tools' via 2025-08-31T14:07:55,846 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,847 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,847 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,848 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,849 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,851 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,851 even if it does not contain any `.py` files. 2025-08-31T14:07:55,852 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,852 directory, all directories are treated like packages. 2025-08-31T14:07:55,853 ******************************************************************************** 2025-08-31T14:07:55,854 !! 2025-08-31T14:07:55,854 check.warn(importable) 2025-08-31T14:07:55,855 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_pmx' is absent from the `packages` configuration. 2025-08-31T14:07:55,855 !! 2025-08-31T14:07:55,857 ******************************************************************************** 2025-08-31T14:07:55,857 ############################ 2025-08-31T14:07:55,858 # Package would be ignored # 2025-08-31T14:07:55,858 ############################ 2025-08-31T14:07:55,859 Python recognizes 'biobb_adapters.cwl.biobb_pmx' as an importable package[^1], 2025-08-31T14:07:55,859 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,861 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,898 package, please make sure that 'biobb_adapters.cwl.biobb_pmx' is explicitly added 2025-08-31T14:07:55,899 to the `packages` configuration field. 2025-08-31T14:07:55,900 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,901 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,902 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,904 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,905 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,907 If you don't want 'biobb_adapters.cwl.biobb_pmx' to be distributed and are 2025-08-31T14:07:55,908 already explicitly excluding 'biobb_adapters.cwl.biobb_pmx' via 2025-08-31T14:07:55,908 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,909 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,910 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,911 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,913 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,915 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,916 even if it does not contain any `.py` files. 2025-08-31T14:07:55,916 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,917 directory, all directories are treated like packages. 2025-08-31T14:07:55,918 ******************************************************************************** 2025-08-31T14:07:55,919 !! 2025-08-31T14:07:55,920 check.warn(importable) 2025-08-31T14:07:55,920 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_pytorch' is absent from the `packages` configuration. 2025-08-31T14:07:55,921 !! 2025-08-31T14:07:55,922 ******************************************************************************** 2025-08-31T14:07:55,923 ############################ 2025-08-31T14:07:55,923 # Package would be ignored # 2025-08-31T14:07:55,924 ############################ 2025-08-31T14:07:55,925 Python recognizes 'biobb_adapters.cwl.biobb_pytorch' as an importable package[^1], 2025-08-31T14:07:55,925 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,926 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,927 package, please make sure that 'biobb_adapters.cwl.biobb_pytorch' is explicitly added 2025-08-31T14:07:55,928 to the `packages` configuration field. 2025-08-31T14:07:55,929 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,930 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,930 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,932 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,933 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,935 If you don't want 'biobb_adapters.cwl.biobb_pytorch' to be distributed and are 2025-08-31T14:07:55,935 already explicitly excluding 'biobb_adapters.cwl.biobb_pytorch' via 2025-08-31T14:07:55,936 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,937 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,938 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,939 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,940 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,943 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,944 even if it does not contain any `.py` files. 2025-08-31T14:07:55,944 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,945 directory, all directories are treated like packages. 2025-08-31T14:07:55,946 ******************************************************************************** 2025-08-31T14:07:55,947 !! 2025-08-31T14:07:55,948 check.warn(importable) 2025-08-31T14:07:55,949 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_structure_utils' is absent from the `packages` configuration. 2025-08-31T14:07:55,949 !! 2025-08-31T14:07:55,951 ******************************************************************************** 2025-08-31T14:07:55,952 ############################ 2025-08-31T14:07:55,952 # Package would be ignored # 2025-08-31T14:07:55,953 ############################ 2025-08-31T14:07:55,954 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils' as an importable package[^1], 2025-08-31T14:07:55,955 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,956 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,957 package, please make sure that 'biobb_adapters.cwl.biobb_structure_utils' is explicitly added 2025-08-31T14:07:55,957 to the `packages` configuration field. 2025-08-31T14:07:55,959 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,960 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,961 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,963 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,964 If you don't want 'biobb_adapters.cwl.biobb_structure_utils' to be distributed and are 2025-08-31T14:07:55,964 already explicitly excluding 'biobb_adapters.cwl.biobb_structure_utils' via 2025-08-31T14:07:55,965 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,966 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,966 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:55,968 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:55,969 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:55,971 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:55,972 even if it does not contain any `.py` files. 2025-08-31T14:07:55,972 On the other hand, currently there is no concept of package data 2025-08-31T14:07:55,973 directory, all directories are treated like packages. 2025-08-31T14:07:55,974 ******************************************************************************** 2025-08-31T14:07:55,975 !! 2025-08-31T14:07:55,976 check.warn(importable) 2025-08-31T14:07:55,976 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_vs' is absent from the `packages` configuration. 2025-08-31T14:07:55,977 !! 2025-08-31T14:07:55,979 ******************************************************************************** 2025-08-31T14:07:55,979 ############################ 2025-08-31T14:07:55,980 # Package would be ignored # 2025-08-31T14:07:55,981 ############################ 2025-08-31T14:07:55,982 Python recognizes 'biobb_adapters.cwl.biobb_vs' as an importable package[^1], 2025-08-31T14:07:55,982 but it is absent from setuptools' `packages` configuration. 2025-08-31T14:07:55,984 This leads to an ambiguous overall configuration. If you want to distribute this 2025-08-31T14:07:55,984 package, please make sure that 'biobb_adapters.cwl.biobb_vs' is explicitly added 2025-08-31T14:07:55,985 to the `packages` configuration field. 2025-08-31T14:07:55,986 Alternatively, you can also rely on setuptools' discovery methods 2025-08-31T14:07:55,987 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-08-31T14:07:55,988 instead of `find_packages(...)`/`find:`). 2025-08-31T14:07:55,990 You can read more about "package discovery" on setuptools documentation page: 2025-08-31T14:07:55,992 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-08-31T14:07:55,994 If you don't want 'biobb_adapters.cwl.biobb_vs' to be distributed and are 2025-08-31T14:07:55,995 already explicitly excluding 'biobb_adapters.cwl.biobb_vs' via 2025-08-31T14:07:55,996 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-08-31T14:07:55,997 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-08-31T14:07:55,999 combination with a more fine grained `package-data` configuration. 2025-08-31T14:07:56,000 You can read more about "package data files" on setuptools documentation page: 2025-08-31T14:07:56,001 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-08-31T14:07:56,003 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-08-31T14:07:56,003 even if it does not contain any `.py` files. 2025-08-31T14:07:56,004 On the other hand, currently there is no concept of package data 2025-08-31T14:07:56,004 directory, all directories are treated like packages. 2025-08-31T14:07:56,005 ******************************************************************************** 2025-08-31T14:07:56,006 !! 2025-08-31T14:07:56,006 check.warn(importable) 2025-08-31T14:07:56,007 copying biobb_adapters/py.typed -> build/lib/biobb_adapters 2025-08-31T14:07:56,007 creating build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,008 copying biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,009 copying biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,009 copying biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,010 copying biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,010 copying biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,011 copying biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,012 copying biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,012 copying biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,013 copying biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,013 copying biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,014 copying biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,014 copying biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,015 copying biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,016 copying biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,016 copying biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,017 copying biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:56,017 creating build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,018 copying biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,019 copying biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,019 copying biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,020 copying biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,020 copying biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,021 copying biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,022 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,023 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,023 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,024 copying biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,024 copying biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,024 copying biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,025 copying biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,026 copying biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,026 copying biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,027 copying biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,027 copying biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,028 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,028 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,029 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:56,029 creating build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,030 copying biobb_adapters/cwl/biobb_chemistry/acpype_convert_amber_to_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,031 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,031 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,032 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,032 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,033 copying biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,034 copying biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,035 copying biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,035 copying biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,036 copying biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,037 copying biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:56,037 creating build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,038 copying biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,038 copying biobb_adapters/cwl/biobb_cmip/cmip_ignore_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,039 copying biobb_adapters/cwl/biobb_cmip/cmip_prepare_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,040 copying biobb_adapters/cwl/biobb_cmip/cmip_prepare_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,040 copying biobb_adapters/cwl/biobb_cmip/cmip_run.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,041 copying biobb_adapters/cwl/biobb_cmip/cmip_titration.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,042 copying biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,042 copying biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,043 copying biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,043 copying biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:56,044 creating build/lib/biobb_adapters/cwl/biobb_cp2k 2025-08-31T14:07:56,044 copying biobb_adapters/cwl/biobb_cp2k/cp2k_prep.cwl -> build/lib/biobb_adapters/cwl/biobb_cp2k 2025-08-31T14:07:56,045 copying biobb_adapters/cwl/biobb_cp2k/cp2k_run.cwl -> build/lib/biobb_adapters/cwl/biobb_cp2k 2025-08-31T14:07:56,046 creating build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,046 copying biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,047 copying biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,047 copying biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,048 copying biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,049 copying biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,049 copying biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,050 copying biobb_adapters/cwl/biobb_dna/canal_unzip.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,051 copying biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,052 copying biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,053 copying biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,054 copying biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,055 copying biobb_adapters/cwl/biobb_dna/dna_timeseries_unzip.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,055 copying biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,056 copying biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,057 copying biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,057 copying biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,058 copying biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,059 copying biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,061 copying biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:56,062 creating build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:56,063 copying biobb_adapters/cwl/biobb_flexdyn/concoord_disco.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:56,064 copying biobb_adapters/cwl/biobb_flexdyn/concoord_dist.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:56,065 copying biobb_adapters/cwl/biobb_flexdyn/imod_imc.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:56,066 copying biobb_adapters/cwl/biobb_flexdyn/imod_imode.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:56,067 copying biobb_adapters/cwl/biobb_flexdyn/imod_imove.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:56,068 copying biobb_adapters/cwl/biobb_flexdyn/nolb_nma.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:56,070 copying biobb_adapters/cwl/biobb_flexdyn/prody_anm.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:56,070 creating build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,071 copying biobb_adapters/cwl/biobb_flexserv/bd_run.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,072 copying biobb_adapters/cwl/biobb_flexserv/dmd_run.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,072 copying biobb_adapters/cwl/biobb_flexserv/nma_run.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,073 copying biobb_adapters/cwl/biobb_flexserv/pcz_animate.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,074 copying biobb_adapters/cwl/biobb_flexserv/pcz_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,074 copying biobb_adapters/cwl/biobb_flexserv/pcz_collectivity.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,075 copying biobb_adapters/cwl/biobb_flexserv/pcz_evecs.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,076 copying biobb_adapters/cwl/biobb_flexserv/pcz_hinges.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,076 copying biobb_adapters/cwl/biobb_flexserv/pcz_info.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,077 copying biobb_adapters/cwl/biobb_flexserv/pcz_lindemann.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,078 copying biobb_adapters/cwl/biobb_flexserv/pcz_similarity.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,078 copying biobb_adapters/cwl/biobb_flexserv/pcz_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,079 copying biobb_adapters/cwl/biobb_flexserv/pcz_unzip.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,080 copying biobb_adapters/cwl/biobb_flexserv/pcz_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:56,080 creating build/lib/biobb_adapters/cwl/biobb_godmd 2025-08-31T14:07:56,081 copying biobb_adapters/cwl/biobb_godmd/godmd_prep.cwl -> build/lib/biobb_adapters/cwl/biobb_godmd 2025-08-31T14:07:56,082 copying biobb_adapters/cwl/biobb_godmd/godmd_run.cwl -> build/lib/biobb_adapters/cwl/biobb_godmd 2025-08-31T14:07:56,083 creating build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,083 copying biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,084 copying biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,085 copying biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,086 copying biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,086 copying biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,087 copying biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,088 copying biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,088 copying biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,089 copying biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,090 copying biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,091 copying biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,091 copying biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,092 copying biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:56,093 creating build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,094 copying biobb_adapters/cwl/biobb_haddock/capri_eval.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,094 copying biobb_adapters/cwl/biobb_haddock/clust_fcc.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,095 copying biobb_adapters/cwl/biobb_haddock/contact_map.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,096 copying biobb_adapters/cwl/biobb_haddock/em_ref.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,096 copying biobb_adapters/cwl/biobb_haddock/flex_ref.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,097 copying biobb_adapters/cwl/biobb_haddock/haddock3_accessibility.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,098 copying biobb_adapters/cwl/biobb_haddock/haddock3_actpass_to_ambig.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,098 copying biobb_adapters/cwl/biobb_haddock/haddock3_extend.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,099 copying biobb_adapters/cwl/biobb_haddock/haddock3_passive_from_active.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,100 copying biobb_adapters/cwl/biobb_haddock/haddock3_restrain_bodies.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,100 copying biobb_adapters/cwl/biobb_haddock/haddock3_run.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,101 copying biobb_adapters/cwl/biobb_haddock/rigid_body.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,102 copying biobb_adapters/cwl/biobb_haddock/sele_top.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,103 copying biobb_adapters/cwl/biobb_haddock/sele_top_clusts.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,103 copying biobb_adapters/cwl/biobb_haddock/topology.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:56,104 creating build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,104 copying biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,106 copying biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,106 copying biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,107 copying biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,107 copying biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,108 copying biobb_adapters/cwl/biobb_io/ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,109 copying biobb_adapters/cwl/biobb_io/mddb.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,110 copying biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,110 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,111 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,112 copying biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,115 copying biobb_adapters/cwl/biobb_io/pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,117 copying biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,120 copying biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,122 copying biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:56,125 creating build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,126 copying biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,129 copying biobb_adapters/cwl/biobb_md/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,132 copying biobb_adapters/cwl/biobb_md/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,134 copying biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,136 copying biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,139 copying biobb_adapters/cwl/biobb_md/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,141 copying biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,145 copying biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,148 copying biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,150 copying biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,153 copying biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,155 copying biobb_adapters/cwl/biobb_md/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:56,157 creating build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:56,159 copying biobb_adapters/cwl/biobb_mem/cpptraj_density.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:56,162 copying biobb_adapters/cwl/biobb_mem/fatslim_apl.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:56,164 copying biobb_adapters/cwl/biobb_mem/fatslim_membranes.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:56,167 copying biobb_adapters/cwl/biobb_mem/gmx_order.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:56,169 copying biobb_adapters/cwl/biobb_mem/lpp_assign_leaflets.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:56,172 copying biobb_adapters/cwl/biobb_mem/lpp_flip_flop.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:56,174 copying biobb_adapters/cwl/biobb_mem/lpp_zpositions.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:56,176 copying biobb_adapters/cwl/biobb_mem/mda_hole.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:56,179 creating build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,180 copying biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,183 copying biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,185 copying biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,188 copying biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,191 copying biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,193 copying biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,195 copying biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,198 copying biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,200 copying biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,203 copying biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,205 copying biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,208 copying biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,211 copying biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,213 copying biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,216 copying biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,218 copying biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,221 copying biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,223 copying biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,225 copying biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,228 copying biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,230 copying biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,233 copying biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,235 copying biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,237 copying biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,240 copying biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,242 copying biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,245 copying biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,248 copying biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,250 copying biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,252 copying biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,254 copying biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,257 copying biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,259 copying biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,261 copying biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,263 copying biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,265 copying biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,268 copying biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,270 copying biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:56,272 creating build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,273 copying biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,276 copying biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,278 copying biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,280 copying biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,283 copying biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,285 copying biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,288 copying biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,290 copying biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,292 copying biobb_adapters/cwl/biobb_model/mutate.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:56,294 creating build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,295 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,297 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chainxseg.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,299 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_delhetatm.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,301 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fetch.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,303 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fixinsert.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,306 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_keepcoord.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,308 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_merge.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,310 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_mkensemble.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,312 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_reres.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,315 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_seg.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,317 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selaltloc.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,319 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selchain.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,321 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selres.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,324 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitmodel.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,326 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitseg.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,329 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tidy.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,331 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tofasta.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,334 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_uniqname.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:56,336 creating build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:56,337 copying biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:56,341 copying biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:56,345 copying biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:56,348 copying biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:56,350 copying biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:56,353 copying biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:56,355 copying biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:56,357 creating build/lib/biobb_adapters/cwl/biobb_pytorch 2025-08-31T14:07:56,358 copying biobb_adapters/cwl/biobb_pytorch/apply_mdae.cwl -> build/lib/biobb_adapters/cwl/biobb_pytorch 2025-08-31T14:07:56,360 copying biobb_adapters/cwl/biobb_pytorch/train_mdae.cwl -> build/lib/biobb_adapters/cwl/biobb_pytorch 2025-08-31T14:07:56,363 creating build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,363 copying biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,366 copying biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,368 copying biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,370 copying biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,372 copying biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,374 copying biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,376 copying biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,379 copying biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,381 copying biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,383 copying biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,385 copying biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,387 copying biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,389 copying biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,391 copying biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,394 copying biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:56,396 creating build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,397 copying biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,399 copying biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,401 copying biobb_adapters/cwl/biobb_vs/box.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,404 copying biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,406 copying biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,408 copying biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,410 copying biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,412 copying biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,414 copying biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:56,469 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-08-31T14:07:56,470 !! 2025-08-31T14:07:56,471 ******************************************************************************** 2025-08-31T14:07:56,472 Please avoid running ``setup.py`` directly. 2025-08-31T14:07:56,473 Instead, use pypa/build, pypa/installer or other 2025-08-31T14:07:56,473 standards-based tools. 2025-08-31T14:07:56,474 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-08-31T14:07:56,475 or your builds will no longer be supported. 2025-08-31T14:07:56,476 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-08-31T14:07:56,476 ******************************************************************************** 2025-08-31T14:07:56,477 !! 2025-08-31T14:07:56,477 self.initialize_options() 2025-08-31T14:07:56,496 installing to build/bdist.linux-armv7l/wheel 2025-08-31T14:07:56,496 running install 2025-08-31T14:07:56,519 running install_lib 2025-08-31T14:07:56,547 creating build/bdist.linux-armv7l/wheel 2025-08-31T14:07:56,549 creating build/bdist.linux-armv7l/wheel/biobb_adapters 2025-08-31T14:07:56,550 copying build/lib/biobb_adapters/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_adapters 2025-08-31T14:07:56,552 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss 2025-08-31T14:07:56,553 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip 2025-08-31T14:07:56,555 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,556 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_titration.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,557 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,559 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,561 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,563 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,564 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_ignore_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,566 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,568 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,570 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,571 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,573 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-08-31T14:07:56,575 copying build/lib/biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip 2025-08-31T14:07:56,577 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml 2025-08-31T14:07:56,578 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:56,579 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:56,581 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:56,583 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:56,584 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-08-31T14:07:56,586 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:56,587 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:56,589 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:56,591 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:56,592 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:56,594 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:56,595 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:56,597 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:56,599 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-08-31T14:07:56,601 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:56,602 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:56,604 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:56,606 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:56,607 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:56,609 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:56,611 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:56,612 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-08-31T14:07:56,615 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:56,616 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:56,618 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:56,621 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:56,623 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:56,625 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-08-31T14:07:56,627 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:56,628 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:56,630 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:56,632 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:56,633 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:56,635 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:56,637 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:56,638 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:56,640 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-08-31T14:07:56,643 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:56,644 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:56,645 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:56,647 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:56,649 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-08-31T14:07:56,651 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,652 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,654 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,656 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,657 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,659 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,661 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,663 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,665 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,667 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-08-31T14:07:56,669 copying build/lib/biobb_adapters/pycompss/biobb_ml/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml 2025-08-31T14:07:56,671 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx 2025-08-31T14:07:56,673 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,674 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,676 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,678 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,680 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,682 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,684 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,686 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,688 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,690 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,691 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,693 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,695 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmx 2025-08-31T14:07:56,696 copying build/lib/biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx 2025-08-31T14:07:56,698 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs 2025-08-31T14:07:56,700 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:56,701 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:56,703 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:56,705 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:56,708 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:56,712 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-08-31T14:07:56,715 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T14:07:56,716 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T14:07:56,719 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T14:07:56,721 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/vina 2025-08-31T14:07:56,723 copying build/lib/biobb_adapters/pycompss/biobb_vs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs 2025-08-31T14:07:56,725 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:56,727 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:56,729 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:56,731 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:56,733 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:56,735 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-08-31T14:07:56,738 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry 2025-08-31T14:07:56,740 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:56,741 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:56,743 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:56,745 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:56,747 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:56,749 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-08-31T14:07:56,752 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,753 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,755 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,757 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,760 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,762 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,764 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,766 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,768 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,770 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-08-31T14:07:56,773 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,774 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,776 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,778 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,780 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,782 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,784 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,787 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,788 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,790 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,793 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-08-31T14:07:56,795 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry 2025-08-31T14:07:56,797 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2025-08-31T14:07:56,798 copying build/lib/biobb_adapters/pycompss/biobb_commons/task_config.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_commons 2025-08-31T14:07:56,801 copying build/lib/biobb_adapters/pycompss/biobb_commons/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_commons 2025-08-31T14:07:56,803 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils 2025-08-31T14:07:56,805 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,806 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,808 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,810 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,812 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,813 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,815 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,816 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,818 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,820 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,821 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,823 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,825 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,826 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,828 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,830 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,832 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,833 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,835 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,837 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,838 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,840 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,842 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,843 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,845 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,847 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,848 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,850 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-08-31T14:07:56,852 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils 2025-08-31T14:07:56,853 copying build/lib/biobb_adapters/pycompss/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss 2025-08-31T14:07:56,855 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis 2025-08-31T14:07:56,857 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,858 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,860 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,862 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,863 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,865 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,867 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,868 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,870 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,872 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,874 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,875 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,877 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,879 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,881 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,883 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,884 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,886 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-08-31T14:07:56,888 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,889 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,891 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,893 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,895 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,897 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,899 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,900 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,902 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,904 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,906 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,907 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,909 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,911 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,912 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,914 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,916 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,918 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,920 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,922 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,924 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,926 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,928 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,930 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,931 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,933 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-08-31T14:07:56,935 copying build/lib/biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis 2025-08-31T14:07:56,937 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md 2025-08-31T14:07:56,939 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,940 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,942 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,944 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,946 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,948 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,949 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,951 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,953 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,954 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,956 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,958 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-08-31T14:07:56,961 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:56,962 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:56,964 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:56,965 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:56,967 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:56,968 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-08-31T14:07:56,970 copying build/lib/biobb_adapters/pycompss/biobb_md/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md 2025-08-31T14:07:56,972 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io 2025-08-31T14:07:56,974 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,975 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,976 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,978 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,980 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,982 copying build/lib/biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,984 copying build/lib/biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,986 copying build/lib/biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,987 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,989 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,991 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,992 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,994 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,996 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,997 copying build/lib/biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:56,999 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:57,001 copying build/lib/biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:57,002 copying build/lib/biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:57,004 copying build/lib/biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:57,006 copying build/lib/biobb_adapters/pycompss/biobb_io/api/mddb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:57,007 copying build/lib/biobb_adapters/pycompss/biobb_io/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:57,009 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-08-31T14:07:57,011 copying build/lib/biobb_adapters/pycompss/biobb_io/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io 2025-08-31T14:07:57,013 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model 2025-08-31T14:07:57,014 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,015 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,017 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,018 copying build/lib/biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,020 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,022 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,024 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,025 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,027 copying build/lib/biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,029 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,030 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,032 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,034 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-08-31T14:07:57,036 copying build/lib/biobb_adapters/pycompss/biobb_model/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model 2025-08-31T14:07:57,038 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber 2025-08-31T14:07:57,040 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T14:07:57,042 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T14:07:57,044 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pmemd 2025-08-31T14:07:57,046 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T14:07:57,047 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T14:07:57,049 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/ambpdb 2025-08-31T14:07:57,051 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T14:07:57,052 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T14:07:57,054 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T14:07:57,055 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cphstats 2025-08-31T14:07:57,057 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T14:07:57,058 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T14:07:57,060 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T14:07:57,062 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-08-31T14:07:57,063 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T14:07:57,064 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T14:07:57,066 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cpptraj 2025-08-31T14:07:57,068 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T14:07:57,069 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T14:07:57,071 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/sander 2025-08-31T14:07:57,073 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T14:07:57,074 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T14:07:57,076 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/nab 2025-08-31T14:07:57,079 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:57,080 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:57,083 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:57,085 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:57,087 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:57,089 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-08-31T14:07:57,091 copying build/lib/biobb_adapters/pycompss/biobb_amber/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber 2025-08-31T14:07:57,093 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T14:07:57,094 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T14:07:57,096 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T14:07:57,099 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/parmed 2025-08-31T14:07:57,101 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2025-08-31T14:07:57,102 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/process 2025-08-31T14:07:57,104 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/process 2025-08-31T14:07:57,105 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/process 2025-08-31T14:07:57,108 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl 2025-08-31T14:07:57,109 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:57,110 copying build/lib/biobb_adapters/cwl/biobb_mem/fatslim_membranes.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:57,112 copying build/lib/biobb_adapters/cwl/biobb_mem/cpptraj_density.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:57,115 copying build/lib/biobb_adapters/cwl/biobb_mem/lpp_flip_flop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:57,116 copying build/lib/biobb_adapters/cwl/biobb_mem/lpp_assign_leaflets.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:57,118 copying build/lib/biobb_adapters/cwl/biobb_mem/mda_hole.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:57,120 copying build/lib/biobb_adapters/cwl/biobb_mem/fatslim_apl.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:57,122 copying build/lib/biobb_adapters/cwl/biobb_mem/gmx_order.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:57,124 copying build/lib/biobb_adapters/cwl/biobb_mem/lpp_zpositions.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-08-31T14:07:57,126 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pytorch 2025-08-31T14:07:57,127 copying build/lib/biobb_adapters/cwl/biobb_pytorch/apply_mdae.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pytorch 2025-08-31T14:07:57,129 copying build/lib/biobb_adapters/cwl/biobb_pytorch/train_mdae.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pytorch 2025-08-31T14:07:57,132 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,133 copying build/lib/biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,135 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_ignore_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,137 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_titration.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,139 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,140 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,143 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,144 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_prepare_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,146 copying build/lib/biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,148 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_prepare_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,150 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-08-31T14:07:57,154 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_godmd 2025-08-31T14:07:57,155 copying build/lib/biobb_adapters/cwl/biobb_godmd/godmd_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_godmd 2025-08-31T14:07:57,157 copying build/lib/biobb_adapters/cwl/biobb_godmd/godmd_prep.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_godmd 2025-08-31T14:07:57,160 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,161 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,163 copying build/lib/biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,165 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,167 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,168 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,170 copying build/lib/biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,172 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,174 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,176 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,177 copying build/lib/biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,179 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,181 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,183 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,185 copying build/lib/biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,187 copying build/lib/biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,189 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,190 copying build/lib/biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,192 copying build/lib/biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,195 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,196 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,198 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,200 copying build/lib/biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,202 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,204 copying build/lib/biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,206 copying build/lib/biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,207 copying build/lib/biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,209 copying build/lib/biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,211 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,213 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,215 copying build/lib/biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,217 copying build/lib/biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,219 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,221 copying build/lib/biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,223 copying build/lib/biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,224 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,226 copying build/lib/biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,228 copying build/lib/biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,230 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-08-31T14:07:57,232 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:57,233 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:57,235 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:57,237 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:57,239 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:57,241 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:57,243 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:57,245 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-08-31T14:07:57,247 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,248 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fetch.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,250 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tofasta.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,252 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitseg.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,254 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_keepcoord.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,255 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fixinsert.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,257 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chainxseg.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,259 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_delhetatm.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,261 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selchain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,263 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,265 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selres.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,266 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_mkensemble.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,268 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_reres.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,270 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selaltloc.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,272 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_seg.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,274 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitmodel.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,275 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_merge.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,277 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tidy.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,279 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_uniqname.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-08-31T14:07:57,281 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,282 copying build/lib/biobb_adapters/cwl/biobb_vs/box.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,284 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,286 copying build/lib/biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,288 copying build/lib/biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,290 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,292 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,293 copying build/lib/biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,295 copying build/lib/biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,297 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-08-31T14:07:57,299 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,300 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,302 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,303 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,305 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,307 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,309 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,311 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,313 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,315 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,316 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,318 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_convert_amber_to_gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-08-31T14:07:57,321 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,322 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_stiffness.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,323 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_zip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,325 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_hinges.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,327 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_collectivity.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,329 copying build/lib/biobb_adapters/cwl/biobb_flexserv/nma_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,331 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_unzip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,333 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_info.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,335 copying build/lib/biobb_adapters/cwl/biobb_flexserv/bd_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,336 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_lindemann.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,338 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_animate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,340 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_evecs.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,341 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_bfactor.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,343 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_similarity.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,345 copying build/lib/biobb_adapters/cwl/biobb_flexserv/dmd_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-08-31T14:07:57,347 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,348 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,350 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,352 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,354 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,356 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,358 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,359 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,361 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,363 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,365 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,367 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,369 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,371 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,372 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,374 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-08-31T14:07:57,377 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:57,377 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/imod_imc.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:57,379 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/concoord_disco.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:57,381 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/prody_anm.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:57,383 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/imod_imode.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:57,385 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/concoord_dist.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:57,386 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/imod_imove.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:57,388 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/nolb_nma.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-08-31T14:07:57,391 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,392 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,394 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,396 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,398 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,400 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,402 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,403 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,405 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,407 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,409 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,411 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,413 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,415 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,417 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,418 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,420 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,422 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,424 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,426 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,428 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-08-31T14:07:57,430 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cp2k 2025-08-31T14:07:57,431 copying build/lib/biobb_adapters/cwl/biobb_cp2k/cp2k_prep.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cp2k 2025-08-31T14:07:57,433 copying build/lib/biobb_adapters/cwl/biobb_cp2k/cp2k_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cp2k 2025-08-31T14:07:57,436 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,437 copying build/lib/biobb_adapters/cwl/biobb_md/editconf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,439 copying build/lib/biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,442 copying build/lib/biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,444 copying build/lib/biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,446 copying build/lib/biobb_adapters/cwl/biobb_md/solvate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,448 copying build/lib/biobb_adapters/cwl/biobb_md/genion.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,450 copying build/lib/biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,452 copying build/lib/biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,454 copying build/lib/biobb_adapters/cwl/biobb_md/grompp.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,456 copying build/lib/biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,459 copying build/lib/biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,461 copying build/lib/biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-08-31T14:07:57,464 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,465 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,467 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,469 copying build/lib/biobb_adapters/cwl/biobb_io/ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,471 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,473 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,475 copying build/lib/biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,477 copying build/lib/biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,479 copying build/lib/biobb_adapters/cwl/biobb_io/pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,481 copying build/lib/biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,483 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,485 copying build/lib/biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,486 copying build/lib/biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,488 copying build/lib/biobb_adapters/cwl/biobb_io/mddb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,490 copying build/lib/biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,492 copying build/lib/biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-08-31T14:07:57,494 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,495 copying build/lib/biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,497 copying build/lib/biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,499 copying build/lib/biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,500 copying build/lib/biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,502 copying build/lib/biobb_adapters/cwl/biobb_model/mutate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,504 copying build/lib/biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,506 copying build/lib/biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,508 copying build/lib/biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,510 copying build/lib/biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-08-31T14:07:57,512 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,513 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,515 copying build/lib/biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,517 copying build/lib/biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,519 copying build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,520 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,523 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,525 copying build/lib/biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,527 copying build/lib/biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,529 copying build/lib/biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,531 copying build/lib/biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,533 copying build/lib/biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,535 copying build/lib/biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,537 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,538 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,540 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,542 copying build/lib/biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-08-31T14:07:57,545 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,545 copying build/lib/biobb_adapters/cwl/biobb_haddock/rigid_body.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,548 copying build/lib/biobb_adapters/cwl/biobb_haddock/flex_ref.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,550 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_restrain_bodies.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,552 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_accessibility.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,554 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,556 copying build/lib/biobb_adapters/cwl/biobb_haddock/capri_eval.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,558 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_extend.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,559 copying build/lib/biobb_adapters/cwl/biobb_haddock/em_ref.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,562 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_actpass_to_ambig.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,563 copying build/lib/biobb_adapters/cwl/biobb_haddock/contact_map.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,565 copying build/lib/biobb_adapters/cwl/biobb_haddock/topology.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,568 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_passive_from_active.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,570 copying build/lib/biobb_adapters/cwl/biobb_haddock/sele_top_clusts.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,571 copying build/lib/biobb_adapters/cwl/biobb_haddock/sele_top.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,573 copying build/lib/biobb_adapters/cwl/biobb_haddock/clust_fcc.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-08-31T14:07:57,576 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,577 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,579 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,580 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,582 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,584 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,586 copying build/lib/biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,588 copying build/lib/biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,590 copying build/lib/biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,592 copying build/lib/biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,594 copying build/lib/biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,596 copying build/lib/biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,598 copying build/lib/biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,600 copying build/lib/biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,601 copying build/lib/biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,603 copying build/lib/biobb_adapters/cwl/biobb_dna/canal_unzip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,605 copying build/lib/biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,608 copying build/lib/biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,610 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_timeseries_unzip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,611 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-08-31T14:07:57,614 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,615 copying build/lib/biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,617 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,619 copying build/lib/biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,621 copying build/lib/biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,623 copying build/lib/biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,625 copying build/lib/biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,627 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,629 copying build/lib/biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,631 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,632 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,634 copying build/lib/biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,636 copying build/lib/biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,638 copying build/lib/biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-08-31T14:07:57,640 copying build/lib/biobb_adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters 2025-08-31T14:07:57,641 running install_egg_info 2025-08-31T14:07:57,684 Copying biobb_adapters.egg-info to build/bdist.linux-armv7l/wheel/./biobb_adapters-5.1.1-py3.11.egg-info 2025-08-31T14:07:57,696 running install_scripts 2025-08-31T14:07:57,708 creating build/bdist.linux-armv7l/wheel/biobb_adapters-5.1.1.dist-info/WHEEL 2025-08-31T14:07:57,710 creating '/tmp/pip-wheel-5p45o1qr/biobb_adapters-5.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-08-31T14:07:57,712 adding 'biobb_adapters/__init__.py' 2025-08-31T14:07:57,713 adding 'biobb_adapters/py.typed' 2025-08-31T14:07:57,715 adding 'biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl' 2025-08-31T14:07:57,717 adding 'biobb_adapters/cwl/biobb_amber/cestats_run.cwl' 2025-08-31T14:07:57,719 adding 'biobb_adapters/cwl/biobb_amber/cphstats_run.cwl' 2025-08-31T14:07:57,720 adding 'biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl' 2025-08-31T14:07:57,721 adding 'biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl' 2025-08-31T14:07:57,723 adding 'biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl' 2025-08-31T14:07:57,724 adding 'biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl' 2025-08-31T14:07:57,726 adding 'biobb_adapters/cwl/biobb_amber/leap_solvate.cwl' 2025-08-31T14:07:57,727 adding 'biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl' 2025-08-31T14:07:57,728 adding 'biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl' 2025-08-31T14:07:57,730 adding 'biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl' 2025-08-31T14:07:57,731 adding 'biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl' 2025-08-31T14:07:57,732 adding 'biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl' 2025-08-31T14:07:57,734 adding 'biobb_adapters/cwl/biobb_amber/process_mdout.cwl' 2025-08-31T14:07:57,735 adding 'biobb_adapters/cwl/biobb_amber/process_minout.cwl' 2025-08-31T14:07:57,736 adding 'biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl' 2025-08-31T14:07:57,739 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl' 2025-08-31T14:07:57,740 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl' 2025-08-31T14:07:57,741 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl' 2025-08-31T14:07:57,743 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl' 2025-08-31T14:07:57,744 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl' 2025-08-31T14:07:57,745 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl' 2025-08-31T14:07:57,747 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl' 2025-08-31T14:07:57,748 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl' 2025-08-31T14:07:57,750 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl' 2025-08-31T14:07:57,751 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl' 2025-08-31T14:07:57,752 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl' 2025-08-31T14:07:57,754 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl' 2025-08-31T14:07:57,755 adding 'biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl' 2025-08-31T14:07:57,756 adding 'biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl' 2025-08-31T14:07:57,757 adding 'biobb_adapters/cwl/biobb_analysis/gmx_image.cwl' 2025-08-31T14:07:57,759 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl' 2025-08-31T14:07:57,760 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl' 2025-08-31T14:07:57,761 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl' 2025-08-31T14:07:57,762 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl' 2025-08-31T14:07:57,764 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl' 2025-08-31T14:07:57,766 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_convert_amber_to_gmx.cwl' 2025-08-31T14:07:57,767 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl' 2025-08-31T14:07:57,768 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl' 2025-08-31T14:07:57,769 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl' 2025-08-31T14:07:57,771 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl' 2025-08-31T14:07:57,772 adding 'biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl' 2025-08-31T14:07:57,773 adding 'biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl' 2025-08-31T14:07:57,775 adding 'biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl' 2025-08-31T14:07:57,776 adding 'biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl' 2025-08-31T14:07:57,777 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl' 2025-08-31T14:07:57,778 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl' 2025-08-31T14:07:57,781 adding 'biobb_adapters/cwl/biobb_cmip/cmip.cwl' 2025-08-31T14:07:57,782 adding 'biobb_adapters/cwl/biobb_cmip/cmip_ignore_residues.cwl' 2025-08-31T14:07:57,783 adding 'biobb_adapters/cwl/biobb_cmip/cmip_prepare_pdb.cwl' 2025-08-31T14:07:57,784 adding 'biobb_adapters/cwl/biobb_cmip/cmip_prepare_structure.cwl' 2025-08-31T14:07:57,786 adding 'biobb_adapters/cwl/biobb_cmip/cmip_run.cwl' 2025-08-31T14:07:57,787 adding 'biobb_adapters/cwl/biobb_cmip/cmip_titration.cwl' 2025-08-31T14:07:57,788 adding 'biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl' 2025-08-31T14:07:57,790 adding 'biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl' 2025-08-31T14:07:57,791 adding 'biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl' 2025-08-31T14:07:57,792 adding 'biobb_adapters/cwl/biobb_cmip/titration.cwl' 2025-08-31T14:07:57,794 adding 'biobb_adapters/cwl/biobb_cp2k/cp2k_prep.cwl' 2025-08-31T14:07:57,796 adding 'biobb_adapters/cwl/biobb_cp2k/cp2k_run.cwl' 2025-08-31T14:07:57,798 adding 'biobb_adapters/cwl/biobb_dna/average_stiffness.cwl' 2025-08-31T14:07:57,799 adding 'biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl' 2025-08-31T14:07:57,800 adding 'biobb_adapters/cwl/biobb_dna/biobb_canal.cwl' 2025-08-31T14:07:57,802 adding 'biobb_adapters/cwl/biobb_dna/biobb_canion.cwl' 2025-08-31T14:07:57,803 adding 'biobb_adapters/cwl/biobb_dna/biobb_curves.cwl' 2025-08-31T14:07:57,804 adding 'biobb_adapters/cwl/biobb_dna/bipopulations.cwl' 2025-08-31T14:07:57,806 adding 'biobb_adapters/cwl/biobb_dna/canal_unzip.cwl' 2025-08-31T14:07:57,807 adding 'biobb_adapters/cwl/biobb_dna/canonicalag.cwl' 2025-08-31T14:07:57,808 adding 'biobb_adapters/cwl/biobb_dna/dna_averages.cwl' 2025-08-31T14:07:57,810 adding 'biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl' 2025-08-31T14:07:57,811 adding 'biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl' 2025-08-31T14:07:57,812 adding 'biobb_adapters/cwl/biobb_dna/dna_timeseries_unzip.cwl' 2025-08-31T14:07:57,814 adding 'biobb_adapters/cwl/biobb_dna/interbpcorr.cwl' 2025-08-31T14:07:57,815 adding 'biobb_adapters/cwl/biobb_dna/interhpcorr.cwl' 2025-08-31T14:07:57,817 adding 'biobb_adapters/cwl/biobb_dna/interseqcorr.cwl' 2025-08-31T14:07:57,818 adding 'biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl' 2025-08-31T14:07:57,820 adding 'biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl' 2025-08-31T14:07:57,821 adding 'biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl' 2025-08-31T14:07:57,823 adding 'biobb_adapters/cwl/biobb_dna/puckering.cwl' 2025-08-31T14:07:57,825 adding 'biobb_adapters/cwl/biobb_flexdyn/concoord_disco.cwl' 2025-08-31T14:07:57,826 adding 'biobb_adapters/cwl/biobb_flexdyn/concoord_dist.cwl' 2025-08-31T14:07:57,827 adding 'biobb_adapters/cwl/biobb_flexdyn/imod_imc.cwl' 2025-08-31T14:07:57,828 adding 'biobb_adapters/cwl/biobb_flexdyn/imod_imode.cwl' 2025-08-31T14:07:57,830 adding 'biobb_adapters/cwl/biobb_flexdyn/imod_imove.cwl' 2025-08-31T14:07:57,831 adding 'biobb_adapters/cwl/biobb_flexdyn/nolb_nma.cwl' 2025-08-31T14:07:57,832 adding 'biobb_adapters/cwl/biobb_flexdyn/prody_anm.cwl' 2025-08-31T14:07:57,834 adding 'biobb_adapters/cwl/biobb_flexserv/bd_run.cwl' 2025-08-31T14:07:57,835 adding 'biobb_adapters/cwl/biobb_flexserv/dmd_run.cwl' 2025-08-31T14:07:57,836 adding 'biobb_adapters/cwl/biobb_flexserv/nma_run.cwl' 2025-08-31T14:07:57,838 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_animate.cwl' 2025-08-31T14:07:57,839 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_bfactor.cwl' 2025-08-31T14:07:57,840 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_collectivity.cwl' 2025-08-31T14:07:57,842 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_evecs.cwl' 2025-08-31T14:07:57,843 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_hinges.cwl' 2025-08-31T14:07:57,844 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_info.cwl' 2025-08-31T14:07:57,845 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_lindemann.cwl' 2025-08-31T14:07:57,846 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_similarity.cwl' 2025-08-31T14:07:57,848 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_stiffness.cwl' 2025-08-31T14:07:57,849 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_unzip.cwl' 2025-08-31T14:07:57,850 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_zip.cwl' 2025-08-31T14:07:57,852 adding 'biobb_adapters/cwl/biobb_godmd/godmd_prep.cwl' 2025-08-31T14:07:57,854 adding 'biobb_adapters/cwl/biobb_godmd/godmd_run.cwl' 2025-08-31T14:07:57,855 adding 'biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl' 2025-08-31T14:07:57,857 adding 'biobb_adapters/cwl/biobb_gromacs/editconf.cwl' 2025-08-31T14:07:57,858 adding 'biobb_adapters/cwl/biobb_gromacs/genion.cwl' 2025-08-31T14:07:57,859 adding 'biobb_adapters/cwl/biobb_gromacs/genrestr.cwl' 2025-08-31T14:07:57,861 adding 'biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl' 2025-08-31T14:07:57,862 adding 'biobb_adapters/cwl/biobb_gromacs/grompp.cwl' 2025-08-31T14:07:57,864 adding 'biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl' 2025-08-31T14:07:57,865 adding 'biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl' 2025-08-31T14:07:57,866 adding 'biobb_adapters/cwl/biobb_gromacs/mdrun.cwl' 2025-08-31T14:07:57,868 adding 'biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl' 2025-08-31T14:07:57,869 adding 'biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl' 2025-08-31T14:07:57,870 adding 'biobb_adapters/cwl/biobb_gromacs/solvate.cwl' 2025-08-31T14:07:57,872 adding 'biobb_adapters/cwl/biobb_gromacs/trjcat.cwl' 2025-08-31T14:07:57,874 adding 'biobb_adapters/cwl/biobb_haddock/capri_eval.cwl' 2025-08-31T14:07:57,875 adding 'biobb_adapters/cwl/biobb_haddock/clust_fcc.cwl' 2025-08-31T14:07:57,876 adding 'biobb_adapters/cwl/biobb_haddock/contact_map.cwl' 2025-08-31T14:07:57,878 adding 'biobb_adapters/cwl/biobb_haddock/em_ref.cwl' 2025-08-31T14:07:57,879 adding 'biobb_adapters/cwl/biobb_haddock/flex_ref.cwl' 2025-08-31T14:07:57,881 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_accessibility.cwl' 2025-08-31T14:07:57,882 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_actpass_to_ambig.cwl' 2025-08-31T14:07:57,883 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_extend.cwl' 2025-08-31T14:07:57,884 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_passive_from_active.cwl' 2025-08-31T14:07:57,886 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_restrain_bodies.cwl' 2025-08-31T14:07:57,887 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_run.cwl' 2025-08-31T14:07:57,889 adding 'biobb_adapters/cwl/biobb_haddock/rigid_body.cwl' 2025-08-31T14:07:57,890 adding 'biobb_adapters/cwl/biobb_haddock/sele_top.cwl' 2025-08-31T14:07:57,891 adding 'biobb_adapters/cwl/biobb_haddock/sele_top_clusts.cwl' 2025-08-31T14:07:57,892 adding 'biobb_adapters/cwl/biobb_haddock/topology.cwl' 2025-08-31T14:07:57,894 adding 'biobb_adapters/cwl/biobb_io/alphafold.cwl' 2025-08-31T14:07:57,895 adding 'biobb_adapters/cwl/biobb_io/api_binding_site.cwl' 2025-08-31T14:07:57,896 adding 'biobb_adapters/cwl/biobb_io/canonical_fasta.cwl' 2025-08-31T14:07:57,897 adding 'biobb_adapters/cwl/biobb_io/drugbank.cwl' 2025-08-31T14:07:57,899 adding 'biobb_adapters/cwl/biobb_io/ideal_sdf.cwl' 2025-08-31T14:07:57,900 adding 'biobb_adapters/cwl/biobb_io/ligand.cwl' 2025-08-31T14:07:57,901 adding 'biobb_adapters/cwl/biobb_io/mddb.cwl' 2025-08-31T14:07:57,902 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl' 2025-08-31T14:07:57,903 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl' 2025-08-31T14:07:57,905 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl' 2025-08-31T14:07:57,906 adding 'biobb_adapters/cwl/biobb_io/mmcif.cwl' 2025-08-31T14:07:57,907 adding 'biobb_adapters/cwl/biobb_io/pdb.cwl' 2025-08-31T14:07:57,908 adding 'biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl' 2025-08-31T14:07:57,909 adding 'biobb_adapters/cwl/biobb_io/pdb_variants.cwl' 2025-08-31T14:07:57,911 adding 'biobb_adapters/cwl/biobb_io/structure_info.cwl' 2025-08-31T14:07:57,913 adding 'biobb_adapters/cwl/biobb_md/append_ligand.cwl' 2025-08-31T14:07:57,914 adding 'biobb_adapters/cwl/biobb_md/editconf.cwl' 2025-08-31T14:07:57,915 adding 'biobb_adapters/cwl/biobb_md/genion.cwl' 2025-08-31T14:07:57,916 adding 'biobb_adapters/cwl/biobb_md/genrestr.cwl' 2025-08-31T14:07:57,918 adding 'biobb_adapters/cwl/biobb_md/gmxselect.cwl' 2025-08-31T14:07:57,919 adding 'biobb_adapters/cwl/biobb_md/grompp.cwl' 2025-08-31T14:07:57,921 adding 'biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl' 2025-08-31T14:07:57,922 adding 'biobb_adapters/cwl/biobb_md/make_ndx.cwl' 2025-08-31T14:07:57,923 adding 'biobb_adapters/cwl/biobb_md/mdrun.cwl' 2025-08-31T14:07:57,925 adding 'biobb_adapters/cwl/biobb_md/ndx2resttop.cwl' 2025-08-31T14:07:57,926 adding 'biobb_adapters/cwl/biobb_md/pdb2gmx.cwl' 2025-08-31T14:07:57,927 adding 'biobb_adapters/cwl/biobb_md/solvate.cwl' 2025-08-31T14:07:57,929 adding 'biobb_adapters/cwl/biobb_mem/cpptraj_density.cwl' 2025-08-31T14:07:57,931 adding 'biobb_adapters/cwl/biobb_mem/fatslim_apl.cwl' 2025-08-31T14:07:57,932 adding 'biobb_adapters/cwl/biobb_mem/fatslim_membranes.cwl' 2025-08-31T14:07:57,933 adding 'biobb_adapters/cwl/biobb_mem/gmx_order.cwl' 2025-08-31T14:07:57,935 adding 'biobb_adapters/cwl/biobb_mem/lpp_assign_leaflets.cwl' 2025-08-31T14:07:57,936 adding 'biobb_adapters/cwl/biobb_mem/lpp_flip_flop.cwl' 2025-08-31T14:07:57,937 adding 'biobb_adapters/cwl/biobb_mem/lpp_zpositions.cwl' 2025-08-31T14:07:57,939 adding 'biobb_adapters/cwl/biobb_mem/mda_hole.cwl' 2025-08-31T14:07:57,941 adding 'biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl' 2025-08-31T14:07:57,942 adding 'biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl' 2025-08-31T14:07:57,944 adding 'biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl' 2025-08-31T14:07:57,945 adding 'biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl' 2025-08-31T14:07:57,946 adding 'biobb_adapters/cwl/biobb_ml/classification_predict.cwl' 2025-08-31T14:07:57,947 adding 'biobb_adapters/cwl/biobb_ml/clustering_predict.cwl' 2025-08-31T14:07:57,949 adding 'biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl' 2025-08-31T14:07:57,950 adding 'biobb_adapters/cwl/biobb_ml/dbscan.cwl' 2025-08-31T14:07:57,952 adding 'biobb_adapters/cwl/biobb_ml/decision_tree.cwl' 2025-08-31T14:07:57,953 adding 'biobb_adapters/cwl/biobb_ml/dendrogram.cwl' 2025-08-31T14:07:57,954 adding 'biobb_adapters/cwl/biobb_ml/drop_columns.cwl' 2025-08-31T14:07:57,955 adding 'biobb_adapters/cwl/biobb_ml/dummy_variables.cwl' 2025-08-31T14:07:57,956 adding 'biobb_adapters/cwl/biobb_ml/k_means.cwl' 2025-08-31T14:07:57,958 adding 'biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl' 2025-08-31T14:07:57,959 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors.cwl' 2025-08-31T14:07:57,960 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl' 2025-08-31T14:07:57,961 adding 'biobb_adapters/cwl/biobb_ml/linear_regression.cwl' 2025-08-31T14:07:57,962 adding 'biobb_adapters/cwl/biobb_ml/logistic_regression.cwl' 2025-08-31T14:07:57,963 adding 'biobb_adapters/cwl/biobb_ml/map_variables.cwl' 2025-08-31T14:07:57,965 adding 'biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl' 2025-08-31T14:07:57,966 adding 'biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl' 2025-08-31T14:07:57,967 adding 'biobb_adapters/cwl/biobb_ml/oversampling.cwl' 2025-08-31T14:07:57,968 adding 'biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl' 2025-08-31T14:07:57,970 adding 'biobb_adapters/cwl/biobb_ml/pls_components.cwl' 2025-08-31T14:07:57,971 adding 'biobb_adapters/cwl/biobb_ml/pls_regression.cwl' 2025-08-31T14:07:57,972 adding 'biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl' 2025-08-31T14:07:57,973 adding 'biobb_adapters/cwl/biobb_ml/principal_component.cwl' 2025-08-31T14:07:57,975 adding 'biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl' 2025-08-31T14:07:57,976 adding 'biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl' 2025-08-31T14:07:57,977 adding 'biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl' 2025-08-31T14:07:57,979 adding 'biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl' 2025-08-31T14:07:57,980 adding 'biobb_adapters/cwl/biobb_ml/regression_predict.cwl' 2025-08-31T14:07:57,981 adding 'biobb_adapters/cwl/biobb_ml/resampling.cwl' 2025-08-31T14:07:57,982 adding 'biobb_adapters/cwl/biobb_ml/scale_columns.cwl' 2025-08-31T14:07:57,984 adding 'biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl' 2025-08-31T14:07:57,985 adding 'biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl' 2025-08-31T14:07:57,986 adding 'biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl' 2025-08-31T14:07:57,987 adding 'biobb_adapters/cwl/biobb_ml/undersampling.cwl' 2025-08-31T14:07:57,989 adding 'biobb_adapters/cwl/biobb_model/checking_log.cwl' 2025-08-31T14:07:57,991 adding 'biobb_adapters/cwl/biobb_model/fix_altlocs.cwl' 2025-08-31T14:07:57,992 adding 'biobb_adapters/cwl/biobb_model/fix_amides.cwl' 2025-08-31T14:07:57,993 adding 'biobb_adapters/cwl/biobb_model/fix_backbone.cwl' 2025-08-31T14:07:57,994 adding 'biobb_adapters/cwl/biobb_model/fix_chirality.cwl' 2025-08-31T14:07:57,996 adding 'biobb_adapters/cwl/biobb_model/fix_pdb.cwl' 2025-08-31T14:07:57,997 adding 'biobb_adapters/cwl/biobb_model/fix_side_chain.cwl' 2025-08-31T14:07:57,998 adding 'biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl' 2025-08-31T14:07:58,000 adding 'biobb_adapters/cwl/biobb_model/mutate.cwl' 2025-08-31T14:07:58,002 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chain.cwl' 2025-08-31T14:07:58,003 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chainxseg.cwl' 2025-08-31T14:07:58,004 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_delhetatm.cwl' 2025-08-31T14:07:58,005 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fetch.cwl' 2025-08-31T14:07:58,007 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fixinsert.cwl' 2025-08-31T14:07:58,008 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_keepcoord.cwl' 2025-08-31T14:07:58,009 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_merge.cwl' 2025-08-31T14:07:58,010 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_mkensemble.cwl' 2025-08-31T14:07:58,012 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_reres.cwl' 2025-08-31T14:07:58,013 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_seg.cwl' 2025-08-31T14:07:58,014 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selaltloc.cwl' 2025-08-31T14:07:58,016 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selchain.cwl' 2025-08-31T14:07:58,017 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selres.cwl' 2025-08-31T14:07:58,018 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitmodel.cwl' 2025-08-31T14:07:58,020 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitseg.cwl' 2025-08-31T14:07:58,021 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tidy.cwl' 2025-08-31T14:07:58,022 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tofasta.cwl' 2025-08-31T14:07:58,023 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_uniqname.cwl' 2025-08-31T14:07:58,025 adding 'biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl' 2025-08-31T14:07:58,026 adding 'biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl' 2025-08-31T14:07:58,027 adding 'biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl' 2025-08-31T14:07:58,029 adding 'biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl' 2025-08-31T14:07:58,030 adding 'biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl' 2025-08-31T14:07:58,031 adding 'biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl' 2025-08-31T14:07:58,033 adding 'biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl' 2025-08-31T14:07:58,034 adding 'biobb_adapters/cwl/biobb_pytorch/apply_mdae.cwl' 2025-08-31T14:07:58,035 adding 'biobb_adapters/cwl/biobb_pytorch/train_mdae.cwl' 2025-08-31T14:07:58,037 adding 'biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl' 2025-08-31T14:07:58,038 adding 'biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl' 2025-08-31T14:07:58,040 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl' 2025-08-31T14:07:58,041 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl' 2025-08-31T14:07:58,042 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl' 2025-08-31T14:07:58,043 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl' 2025-08-31T14:07:58,045 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl' 2025-08-31T14:07:58,046 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl' 2025-08-31T14:07:58,047 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl' 2025-08-31T14:07:58,048 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl' 2025-08-31T14:07:58,050 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl' 2025-08-31T14:07:58,051 adding 'biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl' 2025-08-31T14:07:58,052 adding 'biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl' 2025-08-31T14:07:58,054 adding 'biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl' 2025-08-31T14:07:58,055 adding 'biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl' 2025-08-31T14:07:58,057 adding 'biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl' 2025-08-31T14:07:58,059 adding 'biobb_adapters/cwl/biobb_vs/bindingsite.cwl' 2025-08-31T14:07:58,060 adding 'biobb_adapters/cwl/biobb_vs/box.cwl' 2025-08-31T14:07:58,061 adding 'biobb_adapters/cwl/biobb_vs/box_residues.cwl' 2025-08-31T14:07:58,062 adding 'biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl' 2025-08-31T14:07:58,064 adding 'biobb_adapters/cwl/biobb_vs/fpocket.cwl' 2025-08-31T14:07:58,065 adding 'biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl' 2025-08-31T14:07:58,066 adding 'biobb_adapters/cwl/biobb_vs/fpocket_run.cwl' 2025-08-31T14:07:58,068 adding 'biobb_adapters/cwl/biobb_vs/fpocket_select.cwl' 2025-08-31T14:07:58,069 adding 'biobb_adapters/pycompss/__init__.py' 2025-08-31T14:07:58,071 adding 'biobb_adapters/pycompss/biobb_amber/__init__.py' 2025-08-31T14:07:58,073 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py' 2025-08-31T14:07:58,074 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py' 2025-08-31T14:07:58,076 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py' 2025-08-31T14:07:58,077 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py' 2025-08-31T14:07:58,078 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py' 2025-08-31T14:07:58,080 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py' 2025-08-31T14:07:58,081 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py' 2025-08-31T14:07:58,082 adding 'biobb_adapters/pycompss/biobb_amber/leap/__init__.py' 2025-08-31T14:07:58,083 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py' 2025-08-31T14:07:58,084 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py' 2025-08-31T14:07:58,086 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py' 2025-08-31T14:07:58,087 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py' 2025-08-31T14:07:58,089 adding 'biobb_adapters/pycompss/biobb_amber/nab/__init__.py' 2025-08-31T14:07:58,090 adding 'biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py' 2025-08-31T14:07:58,092 adding 'biobb_adapters/pycompss/biobb_amber/parmed/__init__.py' 2025-08-31T14:07:58,093 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py' 2025-08-31T14:07:58,094 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py' 2025-08-31T14:07:58,096 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py' 2025-08-31T14:07:58,098 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py' 2025-08-31T14:07:58,099 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py' 2025-08-31T14:07:58,101 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py' 2025-08-31T14:07:58,102 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py' 2025-08-31T14:07:58,103 adding 'biobb_adapters/pycompss/biobb_amber/process/__init__.py' 2025-08-31T14:07:58,105 adding 'biobb_adapters/pycompss/biobb_amber/process/process_mdout.py' 2025-08-31T14:07:58,106 adding 'biobb_adapters/pycompss/biobb_amber/process/process_minout.py' 2025-08-31T14:07:58,108 adding 'biobb_adapters/pycompss/biobb_amber/sander/__init__.py' 2025-08-31T14:07:58,109 adding 'biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py' 2025-08-31T14:07:58,111 adding 'biobb_adapters/pycompss/biobb_analysis/__init__.py' 2025-08-31T14:07:58,112 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py' 2025-08-31T14:07:58,114 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py' 2025-08-31T14:07:58,115 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py' 2025-08-31T14:07:58,116 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py' 2025-08-31T14:07:58,117 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py' 2025-08-31T14:07:58,118 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py' 2025-08-31T14:07:58,120 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py' 2025-08-31T14:07:58,121 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py' 2025-08-31T14:07:58,122 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py' 2025-08-31T14:07:58,123 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py' 2025-08-31T14:07:58,124 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py' 2025-08-31T14:07:58,126 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py' 2025-08-31T14:07:58,127 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py' 2025-08-31T14:07:58,128 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py' 2025-08-31T14:07:58,129 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py' 2025-08-31T14:07:58,131 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py' 2025-08-31T14:07:58,132 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py' 2025-08-31T14:07:58,134 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py' 2025-08-31T14:07:58,135 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py' 2025-08-31T14:07:58,136 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py' 2025-08-31T14:07:58,137 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py' 2025-08-31T14:07:58,139 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py' 2025-08-31T14:07:58,140 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py' 2025-08-31T14:07:58,141 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py' 2025-08-31T14:07:58,142 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py' 2025-08-31T14:07:58,144 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py' 2025-08-31T14:07:58,145 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py' 2025-08-31T14:07:58,146 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py' 2025-08-31T14:07:58,147 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py' 2025-08-31T14:07:58,149 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py' 2025-08-31T14:07:58,150 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py' 2025-08-31T14:07:58,151 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py' 2025-08-31T14:07:58,152 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py' 2025-08-31T14:07:58,153 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py' 2025-08-31T14:07:58,154 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py' 2025-08-31T14:07:58,155 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py' 2025-08-31T14:07:58,157 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py' 2025-08-31T14:07:58,158 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py' 2025-08-31T14:07:58,159 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py' 2025-08-31T14:07:58,160 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py' 2025-08-31T14:07:58,162 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py' 2025-08-31T14:07:58,163 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py' 2025-08-31T14:07:58,164 adding 'biobb_adapters/pycompss/biobb_chemistry/__init__.py' 2025-08-31T14:07:58,166 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py' 2025-08-31T14:07:58,167 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py' 2025-08-31T14:07:58,168 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py' 2025-08-31T14:07:58,170 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py' 2025-08-31T14:07:58,171 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py' 2025-08-31T14:07:58,172 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py' 2025-08-31T14:07:58,174 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py' 2025-08-31T14:07:58,175 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py' 2025-08-31T14:07:58,177 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py' 2025-08-31T14:07:58,178 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py' 2025-08-31T14:07:58,180 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py' 2025-08-31T14:07:58,181 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py' 2025-08-31T14:07:58,182 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py' 2025-08-31T14:07:58,184 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py' 2025-08-31T14:07:58,185 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py' 2025-08-31T14:07:58,187 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py' 2025-08-31T14:07:58,188 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py' 2025-08-31T14:07:58,189 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py' 2025-08-31T14:07:58,190 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py' 2025-08-31T14:07:58,191 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py' 2025-08-31T14:07:58,192 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py' 2025-08-31T14:07:58,193 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py' 2025-08-31T14:07:58,195 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py' 2025-08-31T14:07:58,196 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py' 2025-08-31T14:07:58,197 adding 'biobb_adapters/pycompss/biobb_cmip/__init__.py' 2025-08-31T14:07:58,199 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py' 2025-08-31T14:07:58,200 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py' 2025-08-31T14:07:58,201 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_ignore_residues.py' 2025-08-31T14:07:58,202 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_pdb.py' 2025-08-31T14:07:58,204 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_structure.py' 2025-08-31T14:07:58,205 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_run.py' 2025-08-31T14:07:58,206 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_titration.py' 2025-08-31T14:07:58,207 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py' 2025-08-31T14:07:58,208 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py' 2025-08-31T14:07:58,210 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py' 2025-08-31T14:07:58,211 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/titration.py' 2025-08-31T14:07:58,212 adding 'biobb_adapters/pycompss/biobb_commons/__init__.py' 2025-08-31T14:07:58,214 adding 'biobb_adapters/pycompss/biobb_commons/task_config.py' 2025-08-31T14:07:58,215 adding 'biobb_adapters/pycompss/biobb_io/__init__.py' 2025-08-31T14:07:58,217 adding 'biobb_adapters/pycompss/biobb_io/api/__init__.py' 2025-08-31T14:07:58,218 adding 'biobb_adapters/pycompss/biobb_io/api/alphafold.py' 2025-08-31T14:07:58,219 adding 'biobb_adapters/pycompss/biobb_io/api/api_binding_site.py' 2025-08-31T14:07:58,221 adding 'biobb_adapters/pycompss/biobb_io/api/binding_site.py' 2025-08-31T14:07:58,222 adding 'biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py' 2025-08-31T14:07:58,223 adding 'biobb_adapters/pycompss/biobb_io/api/drugbank.py' 2025-08-31T14:07:58,224 adding 'biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py' 2025-08-31T14:07:58,225 adding 'biobb_adapters/pycompss/biobb_io/api/ligand.py' 2025-08-31T14:07:58,226 adding 'biobb_adapters/pycompss/biobb_io/api/ligand_pc.py' 2025-08-31T14:07:58,228 adding 'biobb_adapters/pycompss/biobb_io/api/mddb.py' 2025-08-31T14:07:58,229 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py' 2025-08-31T14:07:58,230 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py' 2025-08-31T14:07:58,231 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py' 2025-08-31T14:07:58,233 adding 'biobb_adapters/pycompss/biobb_io/api/mmcif.py' 2025-08-31T14:07:58,234 adding 'biobb_adapters/pycompss/biobb_io/api/pdb.py' 2025-08-31T14:07:58,235 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py' 2025-08-31T14:07:58,236 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py' 2025-08-31T14:07:58,237 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_pc.py' 2025-08-31T14:07:58,238 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants.py' 2025-08-31T14:07:58,240 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py' 2025-08-31T14:07:58,241 adding 'biobb_adapters/pycompss/biobb_io/api/structure_info.py' 2025-08-31T14:07:58,243 adding 'biobb_adapters/pycompss/biobb_md/__init__.py' 2025-08-31T14:07:58,244 adding 'biobb_adapters/pycompss/biobb_md/gromacs/__init__.py' 2025-08-31T14:07:58,245 adding 'biobb_adapters/pycompss/biobb_md/gromacs/editconf.py' 2025-08-31T14:07:58,246 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genion.py' 2025-08-31T14:07:58,247 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py' 2025-08-31T14:07:58,248 adding 'biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py' 2025-08-31T14:07:58,250 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp.py' 2025-08-31T14:07:58,251 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py' 2025-08-31T14:07:58,252 adding 'biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py' 2025-08-31T14:07:58,253 adding 'biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py' 2025-08-31T14:07:58,254 adding 'biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py' 2025-08-31T14:07:58,255 adding 'biobb_adapters/pycompss/biobb_md/gromacs/solvate.py' 2025-08-31T14:07:58,257 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py' 2025-08-31T14:07:58,258 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py' 2025-08-31T14:07:58,260 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py' 2025-08-31T14:07:58,261 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py' 2025-08-31T14:07:58,262 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py' 2025-08-31T14:07:58,263 adding 'biobb_adapters/pycompss/biobb_ml/__init__.py' 2025-08-31T14:07:58,265 adding 'biobb_adapters/pycompss/biobb_ml/classification/__init__.py' 2025-08-31T14:07:58,266 adding 'biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py' 2025-08-31T14:07:58,267 adding 'biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py' 2025-08-31T14:07:58,268 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py' 2025-08-31T14:07:58,270 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py' 2025-08-31T14:07:58,271 adding 'biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py' 2025-08-31T14:07:58,272 adding 'biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py' 2025-08-31T14:07:58,273 adding 'biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py' 2025-08-31T14:07:58,275 adding 'biobb_adapters/pycompss/biobb_ml/clustering/__init__.py' 2025-08-31T14:07:58,276 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py' 2025-08-31T14:07:58,277 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py' 2025-08-31T14:07:58,279 adding 'biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py' 2025-08-31T14:07:58,280 adding 'biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py' 2025-08-31T14:07:58,281 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means.py' 2025-08-31T14:07:58,282 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py' 2025-08-31T14:07:58,284 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py' 2025-08-31T14:07:58,285 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py' 2025-08-31T14:07:58,286 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py' 2025-08-31T14:07:58,288 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py' 2025-08-31T14:07:58,289 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py' 2025-08-31T14:07:58,290 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py' 2025-08-31T14:07:58,292 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py' 2025-08-31T14:07:58,293 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py' 2025-08-31T14:07:58,294 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py' 2025-08-31T14:07:58,296 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py' 2025-08-31T14:07:58,297 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py' 2025-08-31T14:07:58,298 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py' 2025-08-31T14:07:58,299 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py' 2025-08-31T14:07:58,301 adding 'biobb_adapters/pycompss/biobb_ml/regression/__init__.py' 2025-08-31T14:07:58,302 adding 'biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py' 2025-08-31T14:07:58,303 adding 'biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py' 2025-08-31T14:07:58,304 adding 'biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py' 2025-08-31T14:07:58,305 adding 'biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py' 2025-08-31T14:07:58,307 adding 'biobb_adapters/pycompss/biobb_ml/resampling/__init__.py' 2025-08-31T14:07:58,308 adding 'biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py' 2025-08-31T14:07:58,309 adding 'biobb_adapters/pycompss/biobb_ml/resampling/resampling.py' 2025-08-31T14:07:58,311 adding 'biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py' 2025-08-31T14:07:58,312 adding 'biobb_adapters/pycompss/biobb_ml/utils/__init__.py' 2025-08-31T14:07:58,313 adding 'biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py' 2025-08-31T14:07:58,314 adding 'biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py' 2025-08-31T14:07:58,316 adding 'biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py' 2025-08-31T14:07:58,317 adding 'biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py' 2025-08-31T14:07:58,318 adding 'biobb_adapters/pycompss/biobb_ml/utils/map_variables.py' 2025-08-31T14:07:58,319 adding 'biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py' 2025-08-31T14:07:58,321 adding 'biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py' 2025-08-31T14:07:58,322 adding 'biobb_adapters/pycompss/biobb_model/__init__.py' 2025-08-31T14:07:58,324 adding 'biobb_adapters/pycompss/biobb_model/model/__init__.py' 2025-08-31T14:07:58,325 adding 'biobb_adapters/pycompss/biobb_model/model/checking_log.py' 2025-08-31T14:07:58,326 adding 'biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py' 2025-08-31T14:07:58,327 adding 'biobb_adapters/pycompss/biobb_model/model/fix_amides.py' 2025-08-31T14:07:58,329 adding 'biobb_adapters/pycompss/biobb_model/model/fix_backbone.py' 2025-08-31T14:07:58,330 adding 'biobb_adapters/pycompss/biobb_model/model/fix_chirality.py' 2025-08-31T14:07:58,331 adding 'biobb_adapters/pycompss/biobb_model/model/fix_pdb.py' 2025-08-31T14:07:58,333 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py' 2025-08-31T14:07:58,334 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py' 2025-08-31T14:07:58,335 adding 'biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py' 2025-08-31T14:07:58,336 adding 'biobb_adapters/pycompss/biobb_model/model/mutate.py' 2025-08-31T14:07:58,337 adding 'biobb_adapters/pycompss/biobb_model/model/mutate_pc.py' 2025-08-31T14:07:58,339 adding 'biobb_adapters/pycompss/biobb_pmx/__init__.py' 2025-08-31T14:07:58,341 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py' 2025-08-31T14:07:58,342 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py' 2025-08-31T14:07:58,343 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py' 2025-08-31T14:07:58,344 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py' 2025-08-31T14:07:58,345 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py' 2025-08-31T14:07:58,347 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py' 2025-08-31T14:07:58,348 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py' 2025-08-31T14:07:58,349 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py' 2025-08-31T14:07:58,351 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py' 2025-08-31T14:07:58,352 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py' 2025-08-31T14:07:58,353 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py' 2025-08-31T14:07:58,354 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py' 2025-08-31T14:07:58,355 adding 'biobb_adapters/pycompss/biobb_structure_utils/__init__.py' 2025-08-31T14:07:58,357 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py' 2025-08-31T14:07:58,358 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py' 2025-08-31T14:07:58,359 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py' 2025-08-31T14:07:58,360 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py' 2025-08-31T14:07:58,362 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py' 2025-08-31T14:07:58,363 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py' 2025-08-31T14:07:58,364 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py' 2025-08-31T14:07:58,365 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py' 2025-08-31T14:07:58,366 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py' 2025-08-31T14:07:58,367 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py' 2025-08-31T14:07:58,369 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py' 2025-08-31T14:07:58,370 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py' 2025-08-31T14:07:58,371 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py' 2025-08-31T14:07:58,372 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py' 2025-08-31T14:07:58,373 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py' 2025-08-31T14:07:58,374 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py' 2025-08-31T14:07:58,376 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py' 2025-08-31T14:07:58,377 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py' 2025-08-31T14:07:58,378 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py' 2025-08-31T14:07:58,379 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py' 2025-08-31T14:07:58,381 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py' 2025-08-31T14:07:58,382 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py' 2025-08-31T14:07:58,383 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py' 2025-08-31T14:07:58,384 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py' 2025-08-31T14:07:58,385 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py' 2025-08-31T14:07:58,387 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py' 2025-08-31T14:07:58,388 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py' 2025-08-31T14:07:58,390 adding 'biobb_adapters/pycompss/biobb_vs/__init__.py' 2025-08-31T14:07:58,391 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py' 2025-08-31T14:07:58,393 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py' 2025-08-31T14:07:58,394 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py' 2025-08-31T14:07:58,395 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py' 2025-08-31T14:07:58,396 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py' 2025-08-31T14:07:58,398 adding 'biobb_adapters/pycompss/biobb_vs/utils/__init__.py' 2025-08-31T14:07:58,399 adding 'biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py' 2025-08-31T14:07:58,400 adding 'biobb_adapters/pycompss/biobb_vs/utils/box.py' 2025-08-31T14:07:58,402 adding 'biobb_adapters/pycompss/biobb_vs/utils/box_residues.py' 2025-08-31T14:07:58,403 adding 'biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py' 2025-08-31T14:07:58,404 adding 'biobb_adapters/pycompss/biobb_vs/vina/__init__.py' 2025-08-31T14:07:58,405 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py' 2025-08-31T14:07:58,407 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py' 2025-08-31T14:07:58,410 adding 'biobb_adapters-5.1.1.dist-info/licenses/LICENSE' 2025-08-31T14:07:58,411 adding 'biobb_adapters-5.1.1.dist-info/METADATA' 2025-08-31T14:07:58,412 adding 'biobb_adapters-5.1.1.dist-info/WHEEL' 2025-08-31T14:07:58,413 adding 'biobb_adapters-5.1.1.dist-info/top_level.txt' 2025-08-31T14:07:58,422 adding 'biobb_adapters-5.1.1.dist-info/RECORD' 2025-08-31T14:07:58,437 removing build/bdist.linux-armv7l/wheel 2025-08-31T14:07:58,663 Building wheel for biobb-adapters (setup.py): finished with status 'done' 2025-08-31T14:07:58,671 Created wheel for biobb-adapters: filename=biobb_adapters-5.1.1-py3-none-any.whl size=482358 sha256=3a7a7d6151633e45df8f60f1558275848ed3bfe9de8f3e0d7cd25e9ac52bf9cf 2025-08-31T14:07:58,672 Stored in directory: /tmp/pip-ephem-wheel-cache-fxwmqq88/wheels/19/6a/5f/9919f61088c7353d818cc61e3101cc37301eff013cc875d879 2025-08-31T14:07:58,697 Successfully built biobb-adapters 2025-08-31T14:07:58,717 Removed build tracker: '/tmp/pip-build-tracker-_ncs3kpc'