2025-09-01T01:22:30,472 Created temporary directory: /tmp/pip-build-tracker-zb0h7mgg
2025-09-01T01:22:30,473 Initialized build tracking at /tmp/pip-build-tracker-zb0h7mgg
2025-09-01T01:22:30,474 Created build tracker: /tmp/pip-build-tracker-zb0h7mgg
2025-09-01T01:22:30,474 Entered build tracker: /tmp/pip-build-tracker-zb0h7mgg
2025-09-01T01:22:30,475 Created temporary directory: /tmp/pip-wheel-sw682hly
2025-09-01T01:22:30,479 Created temporary directory: /tmp/pip-ephem-wheel-cache-ff9d_5i3
2025-09-01T01:22:30,536 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-01T01:22:30,538 2 location(s) to search for versions of pipemake:
2025-09-01T01:22:30,538 * https://pypi.org/simple/pipemake/
2025-09-01T01:22:30,538 * https://www.piwheels.org/simple/pipemake/
2025-09-01T01:22:30,539 Fetching project page and analyzing links: https://pypi.org/simple/pipemake/
2025-09-01T01:22:30,540 Getting page https://pypi.org/simple/pipemake/
2025-09-01T01:22:30,541 Found index url https://pypi.org/simple/
2025-09-01T01:22:30,787 Fetched page https://pypi.org/simple/pipemake/ as application/vnd.pypi.simple.v1+json
2025-09-01T01:22:30,792   Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/85/3c/e85c586f56d02d8d09a521b805e78dc78729a5d6317b4c615461ce4e0a20/pipemake-1.1.6-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7)
2025-09-01T01:22:30,794   Found link https://files.pythonhosted.org/packages/3c/27/7e6631025005005bb09c009c5dcd23dce7873acb164a96fc878604169221/pipemake-1.1.6.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.1.6
2025-09-01T01:22:30,795   Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/9f/5d/fdbeb97d5e01a2eb68f58d5ed1a4d3e287df3df03ee70d32001c8f6d2f92/pipemake-1.2.0-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7)
2025-09-01T01:22:30,796   Found link https://files.pythonhosted.org/packages/64/ea/98914f85bc5842004e75bc64cc484d95e744589e0b384ab5b087cb237e46/pipemake-1.2.0.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.0
2025-09-01T01:22:30,797   Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/d0/ac/2d378195629b40d80f65e862e99fbadefd463af034f2c63fa73fe17fe24e/pipemake-1.2.1-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7)
2025-09-01T01:22:30,798   Found link https://files.pythonhosted.org/packages/93/93/6baec4828f23bad04bb578ed7eb8c90f5d5b0ffe89941f64b844ebbb5cc2/pipemake-1.2.1.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.1
2025-09-01T01:22:30,799   Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/8f/98/5d0fd76bfc506e40d4573008c88c4af019ca6085ecf0bef5328e4d3a333d/pipemake-1.2.2-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7)
2025-09-01T01:22:30,800   Found link https://files.pythonhosted.org/packages/10/c5/ce42096a9450a0c2efea83f558bd47441f3f8a85a2cbb910cb9c0dcdb3dc/pipemake-1.2.2.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.2
2025-09-01T01:22:30,801   Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/48/55/92d35f850b6d6ae6d7a675b39498aeae900d67344c49bb784f997b1414ab/pipemake-1.3.1-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7)
2025-09-01T01:22:30,802   Found link https://files.pythonhosted.org/packages/aa/13/f9fc4da5f2fbe7116a5ee07d8465050aa3d8243017caed196c9823af09de/pipemake-1.3.1.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.3.1
2025-09-01T01:22:30,803 Fetching project page and analyzing links: https://www.piwheels.org/simple/pipemake/
2025-09-01T01:22:30,803 Getting page https://www.piwheels.org/simple/pipemake/
2025-09-01T01:22:30,805 Found index url https://www.piwheels.org/simple/
2025-09-01T01:22:31,006 Fetched page https://www.piwheels.org/simple/pipemake/ as text/html
2025-09-01T01:22:31,008   Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.2-py3-none-any.whl#sha256=6a60ca85f7a952b62e22fc12d78ff9f037652165d1622933685e910c950857c0 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7)
2025-09-01T01:22:31,008   Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.1-py3-none-any.whl#sha256=88a4cc17da64bec0ffefcb6cbcaf2984413a414030a104121812a9549e91e2a5 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7)
2025-09-01T01:22:31,009   Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.0-py3-none-any.whl#sha256=a967ea444e1752b8462fea812b5d0e808cae4f5797cf42deb53552aeaa23c723 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7)
2025-09-01T01:22:31,009   Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.1.6-py3-none-any.whl#sha256=52cbf72af082547b384938cb5f46a7ce2580584066283da4b7aff7400b9aa4a9 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7)
2025-09-01T01:22:31,010 Skipping link: not a file: https://www.piwheels.org/simple/pipemake/
2025-09-01T01:22:31,010 Skipping link: not a file: https://pypi.org/simple/pipemake/
2025-09-01T01:22:31,034 Given no hashes to check 1 links for project 'pipemake': discarding no candidates
2025-09-01T01:22:31,037 Collecting pipemake==1.3.1
2025-09-01T01:22:31,039   Created temporary directory: /tmp/pip-unpack-an2ivbds
2025-09-01T01:22:31,264   Downloading pipemake-1.3.1.tar.gz (31 kB)
2025-09-01T01:22:31,367   Added pipemake==1.3.1 from https://files.pythonhosted.org/packages/aa/13/f9fc4da5f2fbe7116a5ee07d8465050aa3d8243017caed196c9823af09de/pipemake-1.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-zb0h7mgg'
2025-09-01T01:22:31,370   Running setup.py (path:/tmp/pip-wheel-sw682hly/pipemake_7089c67a9364440b8c014504b0a2ccdc/setup.py) egg_info for package pipemake
2025-09-01T01:22:31,371   Created temporary directory: /tmp/pip-pip-egg-info-2um2dtky
2025-09-01T01:22:31,371   Preparing metadata (setup.py): started
2025-09-01T01:22:31,373   Running command python setup.py egg_info
2025-09-01T01:22:32,327   running egg_info
2025-09-01T01:22:32,357   creating /tmp/pip-pip-egg-info-2um2dtky/pipemake.egg-info
2025-09-01T01:22:32,358   writing /tmp/pip-pip-egg-info-2um2dtky/pipemake.egg-info/PKG-INFO
2025-09-01T01:22:32,362   writing dependency_links to /tmp/pip-pip-egg-info-2um2dtky/pipemake.egg-info/dependency_links.txt
2025-09-01T01:22:32,363   writing entry points to /tmp/pip-pip-egg-info-2um2dtky/pipemake.egg-info/entry_points.txt
2025-09-01T01:22:32,365   writing top-level names to /tmp/pip-pip-egg-info-2um2dtky/pipemake.egg-info/top_level.txt
2025-09-01T01:22:32,366   writing manifest file '/tmp/pip-pip-egg-info-2um2dtky/pipemake.egg-info/SOURCES.txt'
2025-09-01T01:22:32,458   reading manifest file '/tmp/pip-pip-egg-info-2um2dtky/pipemake.egg-info/SOURCES.txt'
2025-09-01T01:22:32,459   adding license file 'LICENSE'
2025-09-01T01:22:32,463   writing manifest file '/tmp/pip-pip-egg-info-2um2dtky/pipemake.egg-info/SOURCES.txt'
2025-09-01T01:22:32,568   Preparing metadata (setup.py): finished with status 'done'
2025-09-01T01:22:32,571   Source in /tmp/pip-wheel-sw682hly/pipemake_7089c67a9364440b8c014504b0a2ccdc has version 1.3.1, which satisfies requirement pipemake==1.3.1 from https://files.pythonhosted.org/packages/aa/13/f9fc4da5f2fbe7116a5ee07d8465050aa3d8243017caed196c9823af09de/pipemake-1.3.1.tar.gz
2025-09-01T01:22:32,572   Removed pipemake==1.3.1 from https://files.pythonhosted.org/packages/aa/13/f9fc4da5f2fbe7116a5ee07d8465050aa3d8243017caed196c9823af09de/pipemake-1.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-zb0h7mgg'
2025-09-01T01:22:32,578 Created temporary directory: /tmp/pip-unpack-76mimayb
2025-09-01T01:22:32,578 Created temporary directory: /tmp/pip-unpack-3w7catg_
2025-09-01T01:22:32,579 Building wheels for collected packages: pipemake
2025-09-01T01:22:32,583   Created temporary directory: /tmp/pip-wheel-__ige0_h
2025-09-01T01:22:32,585   DEPRECATION: Building 'pipemake' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pipemake'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-01T01:22:32,586   Building wheel for pipemake (setup.py): started
2025-09-01T01:22:32,587   Destination directory: /tmp/pip-wheel-__ige0_h
2025-09-01T01:22:32,588   Running command python setup.py bdist_wheel
2025-09-01T01:22:33,427   running bdist_wheel
2025-09-01T01:22:33,564   running build
2025-09-01T01:22:33,564   running build_py
2025-09-01T01:22:33,595   creating build/lib/pipemake
2025-09-01T01:22:33,598   copying pipemake/logger.py -> build/lib/pipemake
2025-09-01T01:22:33,600   copying pipemake/__init__.py -> build/lib/pipemake
2025-09-01T01:22:33,602   copying pipemake/parser.py -> build/lib/pipemake
2025-09-01T01:22:33,604   copying pipemake/pathIO.py -> build/lib/pipemake
2025-09-01T01:22:33,606   copying pipemake/pipelineIO.py -> build/lib/pipemake
2025-09-01T01:22:33,609   copying pipemake/wildcardIO.py -> build/lib/pipemake
2025-09-01T01:22:33,611   copying pipemake/fileIO.py -> build/lib/pipemake
2025-09-01T01:22:33,614   copying pipemake/processIO.py -> build/lib/pipemake
2025-09-01T01:22:33,616   copying pipemake/singularityIO.py -> build/lib/pipemake
2025-09-01T01:22:33,618   copying pipemake/pipemake.py -> build/lib/pipemake
2025-09-01T01:22:33,620   copying pipemake/snakemakeIO.py -> build/lib/pipemake
2025-09-01T01:22:33,658   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-01T01:22:33,659   !!

2025-09-01T01:22:33,660           ********************************************************************************
2025-09-01T01:22:33,660           Please avoid running ``setup.py`` directly.
2025-09-01T01:22:33,661           Instead, use pypa/build, pypa/installer or other
2025-09-01T01:22:33,661           standards-based tools.

2025-09-01T01:22:33,663           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-01T01:22:33,663           or your builds will no longer be supported.

2025-09-01T01:22:33,665           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-01T01:22:33,665           ********************************************************************************

2025-09-01T01:22:33,667   !!
2025-09-01T01:22:33,667     self.initialize_options()
2025-09-01T01:22:33,687   installing to build/bdist.linux-armv7l/wheel
2025-09-01T01:22:33,688   running install
2025-09-01T01:22:33,714   running install_lib
2025-09-01T01:22:33,742   creating build/bdist.linux-armv7l/wheel
2025-09-01T01:22:33,745   creating build/bdist.linux-armv7l/wheel/pipemake
2025-09-01T01:22:33,746   copying build/lib/pipemake/logger.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,748   copying build/lib/pipemake/__init__.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,750   copying build/lib/pipemake/parser.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,752   copying build/lib/pipemake/pathIO.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,754   copying build/lib/pipemake/pipelineIO.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,757   copying build/lib/pipemake/wildcardIO.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,759   copying build/lib/pipemake/fileIO.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,762   copying build/lib/pipemake/processIO.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,764   copying build/lib/pipemake/singularityIO.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,766   copying build/lib/pipemake/pipemake.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,768   copying build/lib/pipemake/snakemakeIO.py -> build/bdist.linux-armv7l/wheel/./pipemake
2025-09-01T01:22:33,773   running install_egg_info
2025-09-01T01:22:33,812   running egg_info
2025-09-01T01:22:33,840   writing pipemake.egg-info/PKG-INFO
2025-09-01T01:22:33,843   writing dependency_links to pipemake.egg-info/dependency_links.txt
2025-09-01T01:22:33,844   writing entry points to pipemake.egg-info/entry_points.txt
2025-09-01T01:22:33,846   deleting pipemake.egg-info/requires.txt
2025-09-01T01:22:33,846   writing top-level names to pipemake.egg-info/top_level.txt
2025-09-01T01:22:33,879   reading manifest file 'pipemake.egg-info/SOURCES.txt'
2025-09-01T01:22:33,882   adding license file 'LICENSE'
2025-09-01T01:22:33,886   writing manifest file 'pipemake.egg-info/SOURCES.txt'
2025-09-01T01:22:33,887   Copying pipemake.egg-info to build/bdist.linux-armv7l/wheel/./pipemake-1.3.1-py3.11.egg-info
2025-09-01T01:22:33,897   running install_scripts
2025-09-01T01:22:33,910   creating build/bdist.linux-armv7l/wheel/pipemake-1.3.1.dist-info/WHEEL
2025-09-01T01:22:33,913   creating '/tmp/pip-wheel-__ige0_h/pipemake-1.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-01T01:22:33,915   adding 'pipemake/__init__.py'
2025-09-01T01:22:33,918   adding 'pipemake/fileIO.py'
2025-09-01T01:22:33,919   adding 'pipemake/logger.py'
2025-09-01T01:22:33,922   adding 'pipemake/parser.py'
2025-09-01T01:22:33,924   adding 'pipemake/pathIO.py'
2025-09-01T01:22:33,926   adding 'pipemake/pipelineIO.py'
2025-09-01T01:22:33,928   adding 'pipemake/pipemake.py'
2025-09-01T01:22:33,929   adding 'pipemake/processIO.py'
2025-09-01T01:22:33,931   adding 'pipemake/singularityIO.py'
2025-09-01T01:22:33,937   adding 'pipemake/snakemakeIO.py'
2025-09-01T01:22:33,939   adding 'pipemake/wildcardIO.py'
2025-09-01T01:22:33,942   adding 'pipemake-1.3.1.dist-info/licenses/LICENSE'
2025-09-01T01:22:33,943   adding 'pipemake-1.3.1.dist-info/METADATA'
2025-09-01T01:22:33,944   adding 'pipemake-1.3.1.dist-info/WHEEL'
2025-09-01T01:22:33,945   adding 'pipemake-1.3.1.dist-info/entry_points.txt'
2025-09-01T01:22:33,946   adding 'pipemake-1.3.1.dist-info/top_level.txt'
2025-09-01T01:22:33,947   adding 'pipemake-1.3.1.dist-info/RECORD'
2025-09-01T01:22:33,948   removing build/bdist.linux-armv7l/wheel
2025-09-01T01:22:34,061   Building wheel for pipemake (setup.py): finished with status 'done'
2025-09-01T01:22:34,064   Created wheel for pipemake: filename=pipemake-1.3.1-py3-none-any.whl size=27965 sha256=128c69c4397832dd2ca1ad2f2129c2473f8af3c78545d96bca0ffc1854d1a50a
2025-09-01T01:22:34,065   Stored in directory: /tmp/pip-ephem-wheel-cache-ff9d_5i3/wheels/b5/bd/91/a3e533123856d26e4d9b179d5dc16adcf8d51b5305ab780706
2025-09-01T01:22:34,077 Successfully built pipemake
2025-09-01T01:22:34,081 Removed build tracker: '/tmp/pip-build-tracker-zb0h7mgg'