2025-09-01T23:34:36,034 Created temporary directory: /tmp/pip-build-tracker-lwkzt4el 2025-09-01T23:34:36,036 Initialized build tracking at /tmp/pip-build-tracker-lwkzt4el 2025-09-01T23:34:36,036 Created build tracker: /tmp/pip-build-tracker-lwkzt4el 2025-09-01T23:34:36,037 Entered build tracker: /tmp/pip-build-tracker-lwkzt4el 2025-09-01T23:34:36,037 Created temporary directory: /tmp/pip-wheel-3o_e1mhz 2025-09-01T23:34:36,041 Created temporary directory: /tmp/pip-ephem-wheel-cache-cgotnxbr 2025-09-01T23:34:36,088 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-01T23:34:36,090 2 location(s) to search for versions of emc-pypi: 2025-09-01T23:34:36,090 * https://pypi.org/simple/emc-pypi/ 2025-09-01T23:34:36,090 * https://www.piwheels.org/simple/emc-pypi/ 2025-09-01T23:34:36,091 Fetching project page and analyzing links: https://pypi.org/simple/emc-pypi/ 2025-09-01T23:34:36,092 Getting page https://pypi.org/simple/emc-pypi/ 2025-09-01T23:34:36,094 Found index url https://pypi.org/simple/ 2025-09-01T23:34:36,314 Fetched page https://pypi.org/simple/emc-pypi/ as application/vnd.pypi.simple.v1+json 2025-09-01T23:34:36,317 Found link https://files.pythonhosted.org/packages/05/1c/566ba0771b025c0b2ec0e39a6d131603305408614819603c71146f90eac1/emc-pypi-0.1.0.tar.gz (from https://pypi.org/simple/emc-pypi/), version: 0.1.0 2025-09-01T23:34:36,317 Skipping link: No binaries permitted for emc-pypi: https://files.pythonhosted.org/packages/59/a4/7fb0509c14724134aef6a2a45b94b67b66d54c4b0829a8f06f2acb7aaa6c/emc_pypi-0.1.0-py3-none-any.whl (from https://pypi.org/simple/emc-pypi/) 2025-09-01T23:34:36,318 Found link https://files.pythonhosted.org/packages/98/15/ac33b59925efb0833a5080f607bc135ed8da2824db2ec9a65f1a574e13b1/emc-pypi-0.1.1.tar.gz (from https://pypi.org/simple/emc-pypi/), version: 0.1.1 2025-09-01T23:34:36,319 Skipping link: No binaries permitted for emc-pypi: https://files.pythonhosted.org/packages/4f/d8/4364abb94f19ca3c2a0dca760f5ea095880ba49c142180b97536a412e95c/emc_pypi-0.1.1-py3-none-any.whl (from https://pypi.org/simple/emc-pypi/) 2025-09-01T23:34:36,319 Found link https://files.pythonhosted.org/packages/2e/09/9e21f85e11eeddddc95a7e9860fe2f0ecd3ac3c50c5c0069ae7a33cfe45c/emc-pypi-0.1.2.tar.gz (from https://pypi.org/simple/emc-pypi/), version: 0.1.2 2025-09-01T23:34:36,320 Skipping link: No binaries permitted for emc-pypi: https://files.pythonhosted.org/packages/41/3d/e33ef11fd8dcf0c215f65eeb7ffe9358aa15ae71f5ad85113c9075fe9217/emc_pypi-0.1.2-py3-none-any.whl (from https://pypi.org/simple/emc-pypi/) 2025-09-01T23:34:36,321 Found link https://files.pythonhosted.org/packages/dd/a9/0d34f718929879edfa4e57230fb7b7fa327b4873cd5bef62639c9258ad8c/emc-pypi-1.0.0.tar.gz (from https://pypi.org/simple/emc-pypi/), version: 1.0.0 2025-09-01T23:34:36,322 Skipping link: No binaries permitted for emc-pypi: https://files.pythonhosted.org/packages/89/54/fdc798260ba817180dd11b65e1e5218699bbaf1314b19eadfe96d1159b80/emc_pypi-1.0.0-py3-none-any.whl (from https://pypi.org/simple/emc-pypi/) 2025-09-01T23:34:36,322 Found link https://files.pythonhosted.org/packages/3d/a9/0f3a218a793610f4d7f59f9e80286866bcdb3fff7c0df3091c234ec0dd37/emc-pypi-2022.8.1.1.tar.gz (from https://pypi.org/simple/emc-pypi/), version: 2022.8.1.1 2025-09-01T23:34:36,323 Skipping link: No binaries permitted for emc-pypi: https://files.pythonhosted.org/packages/25/b1/68c02f153cb8938b7e2c4cdb0d37714e0ac0f4ac74dd4976022cee288bdb/emc_pypi-2022.8.1.1-py3-none-any.whl (from https://pypi.org/simple/emc-pypi/) 2025-09-01T23:34:36,323 Found link https://files.pythonhosted.org/packages/5f/48/aa78c45bcb52f7727217c0ebf23c176cba7fa19bfac05f20ba6899e4aeee/emc-pypi-2023.8.1.tar.gz (from https://pypi.org/simple/emc-pypi/), version: 2023.8.1 2025-09-01T23:34:36,324 Skipping link: No binaries permitted for emc-pypi: https://files.pythonhosted.org/packages/a1/a6/09da0f4b20cfe7098ac424ce6654ff897cf901f5b9ac6ead84e6ad68bcb9/emc_pypi-2023.8.1-py3-none-any.whl (from https://pypi.org/simple/emc-pypi/) 2025-09-01T23:34:36,325 Found link https://files.pythonhosted.org/packages/f7/6d/c80c9f1d1691ff0d235ccabbcf8c1d692109c137981e85b7d996b1f1cf4c/emc-pypi-2023.8.2.tar.gz (from https://pypi.org/simple/emc-pypi/), version: 2023.8.2 2025-09-01T23:34:36,326 Skipping link: No binaries permitted for emc-pypi: https://files.pythonhosted.org/packages/bc/9a/1b1b8fd8a892787aa465c29fbb156c47ff9fcf080aa55db406185be255d6/emc_pypi-2023.8.2-py3-none-any.whl (from https://pypi.org/simple/emc-pypi/) 2025-09-01T23:34:36,326 Found link https://files.pythonhosted.org/packages/de/6d/245197cc73bad4b29ec43a7f40e683716df8cb3b3ab47c0bc73f5ebf1182/emc-pypi-2024.8.1.post1.tar.gz (from https://pypi.org/simple/emc-pypi/), version: 2024.8.1.post1 2025-09-01T23:34:36,327 Skipping link: No binaries permitted for emc-pypi: https://files.pythonhosted.org/packages/40/3a/161a18f40c7d65588ae9bdfbf9d51e9ee7c4c26a4a760cbdb29a9f39ac11/emc_pypi-2024.8.1.post1-py3-none-any.whl (from https://pypi.org/simple/emc-pypi/) 2025-09-01T23:34:36,328 Found link https://files.pythonhosted.org/packages/c5/77/8d093c2b2820cc8b4b549e9a0507e8ee708ce2403fe2dd1cd9af70f00995/emc-pypi-2025.8.21.tar.gz (from https://pypi.org/simple/emc-pypi/), version: 2025.8.21 2025-09-01T23:34:36,328 Skipping link: No binaries permitted for emc-pypi: https://files.pythonhosted.org/packages/a4/c0/622d4b759415900b7f51566e26eb609178042a01d21a2058e6ae6537ad38/emc_pypi-2025.8.21-py3-none-any.whl (from https://pypi.org/simple/emc-pypi/) 2025-09-01T23:34:36,329 Fetching project page and analyzing links: https://www.piwheels.org/simple/emc-pypi/ 2025-09-01T23:34:36,329 Getting page https://www.piwheels.org/simple/emc-pypi/ 2025-09-01T23:34:36,330 Found index url https://www.piwheels.org/simple/ 2025-09-01T23:34:36,500 Fetched page https://www.piwheels.org/simple/emc-pypi/ as text/html 2025-09-01T23:34:36,502 Skipping link: No binaries permitted for emc-pypi: https://archive1.piwheels.org/simple/emc-pypi/emc_pypi-2024.8.1.post1-py3-none-any.whl#sha256=eb8074c9120169b7de21e0e00f23d8fcd62939e907121bcd8f6302f86fb9b1e9 (from https://www.piwheels.org/simple/emc-pypi/) 2025-09-01T23:34:36,503 Skipping link: No binaries permitted for emc-pypi: https://archive1.piwheels.org/simple/emc-pypi/emc_pypi-2023.8.2-py3-none-any.whl#sha256=99a7187c38441ba5680762c959cf90266fd8efd4d863f20a50e4fea97cc95ad5 (from https://www.piwheels.org/simple/emc-pypi/) 2025-09-01T23:34:36,504 Skipping link: No binaries permitted for emc-pypi: https://archive1.piwheels.org/simple/emc-pypi/emc_pypi-2023.8.1-py3-none-any.whl#sha256=f62a30e5919f246e9f958384e3b8feae6cc66df3f6b236448c859c89b8adcc9a (from https://www.piwheels.org/simple/emc-pypi/) 2025-09-01T23:34:36,504 Skipping link: No binaries permitted for emc-pypi: https://archive1.piwheels.org/simple/emc-pypi/emc_pypi-2022.8.1.1-py3-none-any.whl#sha256=fc43597a10dfe05555b57750e371309759f5bd703e1e5bb1f00a23b8287997a4 (from https://www.piwheels.org/simple/emc-pypi/) 2025-09-01T23:34:36,505 Skipping link: No binaries permitted for emc-pypi: https://archive1.piwheels.org/simple/emc-pypi/emc_pypi-1.0.0-py3-none-any.whl#sha256=b12c75163430c78ae9530cd5009e62797704c85261697f7954ffe3e5bf175e50 (from https://www.piwheels.org/simple/emc-pypi/) 2025-09-01T23:34:36,505 Skipping link: No binaries permitted for emc-pypi: https://archive1.piwheels.org/simple/emc-pypi/emc_pypi-0.1.2-py3-none-any.whl#sha256=810b71ab8d1eabeb5e53b110e59273573fdf97c79fda81a5cfb37e9d76063a3b (from https://www.piwheels.org/simple/emc-pypi/) 2025-09-01T23:34:36,506 Skipping link: No binaries permitted for emc-pypi: https://archive1.piwheels.org/simple/emc-pypi/emc_pypi-0.1.1-py3-none-any.whl#sha256=ddd71f35fe1d60d4b0e32da11bdd5104d90d0f4141b725529d4a119f64eaac83 (from https://www.piwheels.org/simple/emc-pypi/) 2025-09-01T23:34:36,506 Skipping link: No binaries permitted for emc-pypi: https://archive1.piwheels.org/simple/emc-pypi/emc_pypi-0.1.0-py3-none-any.whl#sha256=4eecff2eb455edc46b970a4a3085fccca3f33f9e20629cedd4ea993ecd66d5e8 (from https://www.piwheels.org/simple/emc-pypi/) 2025-09-01T23:34:36,507 Skipping link: not a file: https://www.piwheels.org/simple/emc-pypi/ 2025-09-01T23:34:36,508 Skipping link: not a file: https://pypi.org/simple/emc-pypi/ 2025-09-01T23:34:36,526 Given no hashes to check 1 links for project 'emc-pypi': discarding no candidates 2025-09-01T23:34:36,528 Collecting emc-pypi==2025.8.21 2025-09-01T23:34:36,530 Created temporary directory: /tmp/pip-unpack-_yxjut1o 2025-09-01T23:34:37,180 Downloading emc-pypi-2025.8.21.tar.gz (18.0 MB) 2025-09-01T23:34:43,072 Added emc-pypi==2025.8.21 from https://files.pythonhosted.org/packages/c5/77/8d093c2b2820cc8b4b549e9a0507e8ee708ce2403fe2dd1cd9af70f00995/emc-pypi-2025.8.21.tar.gz to build tracker '/tmp/pip-build-tracker-lwkzt4el' 2025-09-01T23:34:43,074 Running setup.py (path:/tmp/pip-wheel-3o_e1mhz/emc-pypi_22582b36f68e451fa3113f1350c60d01/setup.py) egg_info for package emc-pypi 2025-09-01T23:34:43,075 Created temporary directory: /tmp/pip-pip-egg-info-zmp9ttqp 2025-09-01T23:34:43,075 Preparing metadata (setup.py): started 2025-09-01T23:34:43,076 Running command python setup.py egg_info 2025-09-01T23:34:43,997 running egg_info 2025-09-01T23:34:44,026 creating /tmp/pip-pip-egg-info-zmp9ttqp/emc_pypi.egg-info 2025-09-01T23:34:44,027 writing /tmp/pip-pip-egg-info-zmp9ttqp/emc_pypi.egg-info/PKG-INFO 2025-09-01T23:34:44,031 writing dependency_links to /tmp/pip-pip-egg-info-zmp9ttqp/emc_pypi.egg-info/dependency_links.txt 2025-09-01T23:34:44,033 writing top-level names to /tmp/pip-pip-egg-info-zmp9ttqp/emc_pypi.egg-info/top_level.txt 2025-09-01T23:34:44,034 writing manifest file '/tmp/pip-pip-egg-info-zmp9ttqp/emc_pypi.egg-info/SOURCES.txt' 2025-09-01T23:34:44,248 reading manifest file '/tmp/pip-pip-egg-info-zmp9ttqp/emc_pypi.egg-info/SOURCES.txt' 2025-09-01T23:34:44,250 adding license file 'LICENSE' 2025-09-01T23:34:44,263 writing manifest file '/tmp/pip-pip-egg-info-zmp9ttqp/emc_pypi.egg-info/SOURCES.txt' 2025-09-01T23:34:44,372 Preparing metadata (setup.py): finished with status 'done' 2025-09-01T23:34:44,375 Source in /tmp/pip-wheel-3o_e1mhz/emc-pypi_22582b36f68e451fa3113f1350c60d01 has version 2025.8.21, which satisfies requirement emc-pypi==2025.8.21 from https://files.pythonhosted.org/packages/c5/77/8d093c2b2820cc8b4b549e9a0507e8ee708ce2403fe2dd1cd9af70f00995/emc-pypi-2025.8.21.tar.gz 2025-09-01T23:34:44,376 Removed emc-pypi==2025.8.21 from https://files.pythonhosted.org/packages/c5/77/8d093c2b2820cc8b4b549e9a0507e8ee708ce2403fe2dd1cd9af70f00995/emc-pypi-2025.8.21.tar.gz from build tracker '/tmp/pip-build-tracker-lwkzt4el' 2025-09-01T23:34:44,381 Created temporary directory: /tmp/pip-unpack-ue5zhvkz 2025-09-01T23:34:44,382 Created temporary directory: /tmp/pip-unpack-2ywvlqwm 2025-09-01T23:34:44,382 Building wheels for collected packages: emc-pypi 2025-09-01T23:34:44,386 Created temporary directory: /tmp/pip-wheel-3tcw5bdc 2025-09-01T23:34:44,387 DEPRECATION: Building 'emc-pypi' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'emc-pypi'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-01T23:34:44,388 Building wheel for emc-pypi (setup.py): started 2025-09-01T23:34:44,390 Destination directory: /tmp/pip-wheel-3tcw5bdc 2025-09-01T23:34:44,390 Running command python setup.py bdist_wheel 2025-09-01T23:34:45,218 running bdist_wheel 2025-09-01T23:34:45,348 running build 2025-09-01T23:34:45,348 running build_py 2025-09-01T23:34:45,377 creating build/lib/pyemc 2025-09-01T23:34:45,380 copying pyemc/__init__.py -> build/lib/pyemc 2025-09-01T23:34:45,382 copying pyemc/runner.py -> build/lib/pyemc 2025-09-01T23:34:45,435 creating build/lib/pyemc/emc 2025-09-01T23:34:45,436 copying pyemc/emc/LICENSE -> build/lib/pyemc/emc 2025-09-01T23:34:45,439 copying pyemc/emc/README -> build/lib/pyemc/emc 2025-09-01T23:34:45,441 copying pyemc/emc/HISTORY -> build/lib/pyemc/emc 2025-09-01T23:34:45,445 creating build/lib/pyemc/emc/bin 2025-09-01T23:34:45,446 copying pyemc/emc/bin/emc_win32.exe -> build/lib/pyemc/emc/bin 2025-09-01T23:34:45,542 copying pyemc/emc/bin/emc_linux_x86_64 -> build/lib/pyemc/emc/bin 2025-09-01T23:34:45,665 copying pyemc/emc/bin/emc_macos -> build/lib/pyemc/emc/bin 2025-09-01T23:34:45,819 copying pyemc/emc/bin/emc_linux_aarch64 -> build/lib/pyemc/emc/bin 2025-09-01T23:34:45,917 creating build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,918 copying pyemc/emc/scripts/prm_search.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,921 copying pyemc/emc/scripts/emc_error.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,924 copying pyemc/emc/scripts/run_host.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,927 copying pyemc/emc/scripts/myjobs.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,930 copying pyemc/emc/scripts/trj_reduce.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,932 copying pyemc/emc/scripts/prm_extract.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,935 copying pyemc/emc/scripts/prm_reduce.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,938 copying pyemc/emc/scripts/openff.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,941 copying pyemc/emc/scripts/emc2lammps.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,943 copying pyemc/emc/scripts/run_stat.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,946 copying pyemc/emc/scripts/prm_list_types.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,949 copying pyemc/emc/scripts/prm_duplicate.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,951 copying pyemc/emc/scripts/hold.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,954 copying pyemc/emc/scripts/emc_setup.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,965 copying pyemc/emc/scripts/view_record.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,968 copying pyemc/emc/scripts/lammps2emc.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,971 copying pyemc/emc/scripts/change_header.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,973 copying pyemc/emc/scripts/replace.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,976 copying pyemc/emc/scripts/.DS_Store -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,980 copying pyemc/emc/scripts/emc_trappe.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,983 copying pyemc/emc/scripts/prm_reduce.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,985 copying pyemc/emc/scripts/change.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,988 copying pyemc/emc/scripts/view_vmd.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,991 copying pyemc/emc/scripts/emc_opls.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,994 copying pyemc/emc/scripts/emc.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:45,998 copying pyemc/emc/scripts/lammps2pdb.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,000 copying pyemc/emc/scripts/pdb_extract.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,004 copying pyemc/emc/scripts/pdb.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,006 copying pyemc/emc/scripts/lammps2lammps.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,009 copying pyemc/emc/scripts/emc_align.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,012 copying pyemc/emc/scripts/run.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,015 copying pyemc/emc/scripts/insight2lammps.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,019 copying pyemc/emc/scripts/try.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,021 copying pyemc/emc/scripts/emc2volume.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,024 copying pyemc/emc/scripts/emc_gromacs.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,027 copying pyemc/emc/scripts/emc_sdk.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,030 copying pyemc/emc/scripts/last.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,033 copying pyemc/emc/scripts/xyz.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,035 copying pyemc/emc/scripts/emc2pdb.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,038 copying pyemc/emc/scripts/emc2insight.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,040 copying pyemc/emc/scripts/pack.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,042 copying pyemc/emc/scripts/avg_error.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,045 copying pyemc/emc/scripts/emc_generate.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,048 copying pyemc/emc/scripts/template.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,050 copying pyemc/emc/scripts/qjobs -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,053 copying pyemc/emc/scripts/emc_clean.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,055 copying pyemc/emc/scripts/run_analyze.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,057 copying pyemc/emc/scripts/run_restart.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,059 copying pyemc/emc/scripts/emc.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,061 copying pyemc/emc/scripts/average.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,064 copying pyemc/emc/scripts/psf_charge.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,066 copying pyemc/emc/scripts/emc_martini.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,069 copying pyemc/emc/scripts/emc2xyz.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,071 copying pyemc/emc/scripts/prm_compare.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,073 copying pyemc/emc/scripts/emc2emc.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,076 copying pyemc/emc/scripts/emc2gromacs.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,078 copying pyemc/emc/scripts/charmm2lammps.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,081 copying pyemc/emc/scripts/traject2pdb.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,083 copying pyemc/emc/scripts/emc_template.sh -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,086 copying pyemc/emc/scripts/emc2energy.emc -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,088 copying pyemc/emc/scripts/clean_restart.pl -> build/lib/pyemc/emc/scripts 2025-09-01T23:34:46,090 creating build/lib/pyemc/emc/scripts/modules 2025-09-01T23:34:46,092 copying pyemc/emc/scripts/modules/EMC.pm -> build/lib/pyemc/emc/scripts/modules 2025-09-01T23:34:46,094 copying pyemc/emc/scripts/modules/EMCField.pm -> build/lib/pyemc/emc/scripts/modules 2025-09-01T23:34:46,098 creating build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,099 copying pyemc/emc/scripts/modules/EMC/Hash.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,102 copying pyemc/emc/scripts/modules/EMC/Residues.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,105 copying pyemc/emc/scripts/modules/EMC/Atoms.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,108 copying pyemc/emc/scripts/modules/EMC/Dist.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,111 copying pyemc/emc/scripts/modules/EMC/Element.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,114 copying pyemc/emc/scripts/modules/EMC/Parameters.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,117 copying pyemc/emc/scripts/modules/EMC/PDB.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,120 copying pyemc/emc/scripts/modules/EMC/LAMMPS.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,125 copying pyemc/emc/scripts/modules/EMC/List.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,128 copying pyemc/emc/scripts/modules/EMC/Test.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,130 copying pyemc/emc/scripts/modules/EMC/Environment.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,134 copying pyemc/emc/scripts/modules/EMC/Fields.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,138 copying pyemc/emc/scripts/modules/EMC/Common.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,141 copying pyemc/emc/scripts/modules/EMC/Matrix.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,144 copying pyemc/emc/scripts/modules/EMC/Rules.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,147 copying pyemc/emc/scripts/modules/EMC/Options.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,150 copying pyemc/emc/scripts/modules/EMC/Types.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,153 copying pyemc/emc/scripts/modules/EMC/Job.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,157 copying pyemc/emc/scripts/modules/EMC/Message.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,160 copying pyemc/emc/scripts/modules/EMC/Analyze.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,163 copying pyemc/emc/scripts/modules/EMC/MD.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,166 copying pyemc/emc/scripts/modules/EMC/IO.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,170 copying pyemc/emc/scripts/modules/EMC/Profiles.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,172 copying pyemc/emc/scripts/modules/EMC/Variables.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,175 copying pyemc/emc/scripts/modules/EMC/XYZ.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,178 copying pyemc/emc/scripts/modules/EMC/Chemistry.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,181 copying pyemc/emc/scripts/modules/EMC/Global.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,185 copying pyemc/emc/scripts/modules/EMC/Polymers.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,188 copying pyemc/emc/scripts/modules/EMC/Mass.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,191 copying pyemc/emc/scripts/modules/EMC/GROMACS.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,195 copying pyemc/emc/scripts/modules/EMC/Groups.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,199 copying pyemc/emc/scripts/modules/EMC/EMC.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,204 copying pyemc/emc/scripts/modules/EMC/Item.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,207 copying pyemc/emc/scripts/modules/EMC/Script.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,210 copying pyemc/emc/scripts/modules/EMC/References.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,213 copying pyemc/emc/scripts/modules/EMC/NAMD.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,216 copying pyemc/emc/scripts/modules/EMC/Increments.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,219 copying pyemc/emc/scripts/modules/EMC/Math.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,221 copying pyemc/emc/scripts/modules/EMC/Clusters.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,224 copying pyemc/emc/scripts/modules/EMC/Struct.pm -> build/lib/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:46,227 creating build/lib/pyemc/emc/scripts/analyze 2025-09-01T23:34:46,228 copying pyemc/emc/scripts/analyze/harvest.sh -> build/lib/pyemc/emc/scripts/analyze 2025-09-01T23:34:46,230 copying pyemc/emc/scripts/analyze/project.sh -> build/lib/pyemc/emc/scripts/analyze 2025-09-01T23:34:46,233 copying pyemc/emc/scripts/analyze/files.sh -> build/lib/pyemc/emc/scripts/analyze 2025-09-01T23:34:46,235 copying pyemc/emc/scripts/analyze/script.sh -> build/lib/pyemc/emc/scripts/analyze 2025-09-01T23:34:46,238 copying pyemc/emc/scripts/analyze/last.sh -> build/lib/pyemc/emc/scripts/analyze 2025-09-01T23:34:46,240 copying pyemc/emc/scripts/analyze/cavity.sh -> build/lib/pyemc/emc/scripts/analyze 2025-09-01T23:34:46,243 creating build/lib/pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:46,244 copying pyemc/emc/scripts/analyze/sample/distance.emc -> build/lib/pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:46,246 copying pyemc/emc/scripts/analyze/sample/gyration.emc -> build/lib/pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:46,249 copying pyemc/emc/scripts/analyze/sample/bond.emc -> build/lib/pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:46,251 copying pyemc/emc/scripts/analyze/sample/cavity.emc -> build/lib/pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:46,253 copying pyemc/emc/scripts/analyze/sample/gr.emc -> build/lib/pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:46,255 creating build/lib/pyemc/emc/scripts/coding 2025-09-01T23:34:46,257 copying pyemc/emc/scripts/coding/hold.sh -> build/lib/pyemc/emc/scripts/coding 2025-09-01T23:34:46,259 copying pyemc/emc/scripts/coding/emc_parse_oper.pl -> build/lib/pyemc/emc/scripts/coding 2025-09-01T23:34:46,261 copying pyemc/emc/scripts/coding/cpmoddir.sh -> build/lib/pyemc/emc/scripts/coding 2025-09-01T23:34:46,263 copying pyemc/emc/scripts/coding/scrape.pl -> build/lib/pyemc/emc/scripts/coding 2025-09-01T23:34:46,265 copying pyemc/emc/scripts/coding/emc_comments.pl -> build/lib/pyemc/emc/scripts/coding 2025-09-01T23:34:46,268 copying pyemc/emc/scripts/coding/cpmod.pl -> build/lib/pyemc/emc/scripts/coding 2025-09-01T23:34:46,270 copying pyemc/emc/scripts/coding/header.pl -> build/lib/pyemc/emc/scripts/coding 2025-09-01T23:34:46,273 creating build/lib/pyemc/emc/check 2025-09-01T23:34:46,274 copying pyemc/emc/check/checked.txt -> build/lib/pyemc/emc/check 2025-09-01T23:34:46,276 copying pyemc/emc/check/void_funcion_n.txt -> build/lib/pyemc/emc/check 2025-09-01T23:34:46,279 copying pyemc/emc/check/notes.txt -> build/lib/pyemc/emc/check 2025-09-01T23:34:46,283 copying pyemc/emc/check/all.txt -> build/lib/pyemc/emc/check 2025-09-01T23:34:46,286 copying pyemc/emc/check/check.pl -> build/lib/pyemc/emc/check 2025-09-01T23:34:46,289 creating build/lib/pyemc/emc/docs 2025-09-01T23:34:46,290 copying pyemc/emc/docs/emc.pdf -> build/lib/pyemc/emc/docs 2025-09-01T23:34:46,307 creating build/lib/pyemc/emc/vmd 2025-09-01T23:34:46,308 copying pyemc/emc/vmd/README -> build/lib/pyemc/emc/vmd 2025-09-01T23:34:46,311 copying pyemc/emc/vmd/license.txt -> build/lib/pyemc/emc/vmd 2025-09-01T23:34:46,313 copying pyemc/emc/vmd/packages.tcl -> build/lib/pyemc/emc/vmd 2025-09-01T23:34:46,316 creating build/lib/pyemc/emc/vmd/packages 2025-09-01T23:34:46,317 copying pyemc/emc/vmd/packages/textview.tcl -> build/lib/pyemc/emc/vmd/packages 2025-09-01T23:34:46,320 copying pyemc/emc/vmd/packages/options.dat -> build/lib/pyemc/emc/vmd/packages 2025-09-01T23:34:46,323 copying pyemc/emc/vmd/packages/gui.tcl -> build/lib/pyemc/emc/vmd/packages 2025-09-01T23:34:46,333 creating build/lib/pyemc/emc/templates 2025-09-01T23:34:46,334 copying pyemc/emc/templates/import.esh -> build/lib/pyemc/emc/templates 2025-09-01T23:34:46,336 copying pyemc/emc/templates/chemistry.esh -> build/lib/pyemc/emc/templates 2025-09-01T23:34:46,339 copying pyemc/emc/templates/polymer.esh -> build/lib/pyemc/emc/templates 2025-09-01T23:34:46,341 copying pyemc/emc/templates/restart.sh -> build/lib/pyemc/emc/templates 2025-09-01T23:34:46,343 copying pyemc/emc/templates/cluster.esh -> build/lib/pyemc/emc/templates 2025-09-01T23:34:46,345 copying pyemc/emc/templates/field.define -> build/lib/pyemc/emc/templates 2025-09-01T23:34:46,348 copying pyemc/emc/templates/field.esh -> build/lib/pyemc/emc/templates 2025-09-01T23:34:46,350 copying pyemc/emc/templates/environment.esh -> build/lib/pyemc/emc/templates 2025-09-01T23:34:46,352 creating build/lib/pyemc/emc/examples/setup/chemistry/polymer/dendrimer 2025-09-01T23:34:46,356 copying pyemc/emc/examples/setup/chemistry/polymer/dendrimer/polymer.esh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/dendrimer 2025-09-01T23:34:46,358 copying pyemc/emc/examples/setup/chemistry/polymer/dendrimer/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/dendrimer 2025-09-01T23:34:46,360 creating build/lib/pyemc/emc/examples/setup/chemistry/polymer/star 2025-09-01T23:34:46,362 copying pyemc/emc/examples/setup/chemistry/polymer/star/setup.esh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/star 2025-09-01T23:34:46,364 creating build/lib/pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:46,365 copying pyemc/emc/examples/setup/chemistry/polymer/homopolymer/polymer.in -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:46,367 copying pyemc/emc/examples/setup/chemistry/polymer/homopolymer/polymer.esh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:46,370 copying pyemc/emc/examples/setup/chemistry/polymer/homopolymer/build.emc -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:46,372 copying pyemc/emc/examples/setup/chemistry/polymer/homopolymer/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:46,374 creating build/lib/pyemc/emc/examples/setup/chemistry/polymer/random 2025-09-01T23:34:46,375 copying pyemc/emc/examples/setup/chemistry/polymer/random/polymer.esh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/random 2025-09-01T23:34:46,378 copying pyemc/emc/examples/setup/chemistry/polymer/random/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/random 2025-09-01T23:34:46,380 creating build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:46,381 copying pyemc/emc/examples/setup/chemistry/polymer/random_block/polymer.esh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:46,383 copying pyemc/emc/examples/setup/chemistry/polymer/random_block/block.in -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:46,386 copying pyemc/emc/examples/setup/chemistry/polymer/random_block/build.emc -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:46,390 copying pyemc/emc/examples/setup/chemistry/polymer/random_block/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:46,392 copying pyemc/emc/examples/setup/chemistry/polymer/random_block/block.prm -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:46,395 creating build/lib/pyemc/emc/examples/setup/chemistry/polymer/biphase 2025-09-01T23:34:46,396 copying pyemc/emc/examples/setup/chemistry/polymer/biphase/polymer.esh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/biphase 2025-09-01T23:34:46,400 copying pyemc/emc/examples/setup/chemistry/polymer/biphase/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/biphase 2025-09-01T23:34:46,402 creating build/lib/pyemc/emc/examples/setup/chemistry/polymer/block 2025-09-01T23:34:46,404 copying pyemc/emc/examples/setup/chemistry/polymer/block/polymer.esh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/block 2025-09-01T23:34:46,406 copying pyemc/emc/examples/setup/chemistry/polymer/block/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/block 2025-09-01T23:34:46,409 creating build/lib/pyemc/emc/examples/setup/chemistry/polymer/copolymer 2025-09-01T23:34:46,411 copying pyemc/emc/examples/setup/chemistry/polymer/copolymer/polymer.esh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/copolymer 2025-09-01T23:34:46,414 creating build/lib/pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:46,415 copying pyemc/emc/examples/setup/chemistry/polymer/alternate/dpd.in -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:46,419 copying pyemc/emc/examples/setup/chemistry/polymer/alternate/polymer.esh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:46,421 copying pyemc/emc/examples/setup/chemistry/polymer/alternate/build.emc -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:46,425 copying pyemc/emc/examples/setup/chemistry/polymer/alternate/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:46,427 creating build/lib/pyemc/emc/examples/setup/chemistry/bulk 2025-09-01T23:34:46,429 copying pyemc/emc/examples/setup/chemistry/bulk/setup.esh -> build/lib/pyemc/emc/examples/setup/chemistry/bulk 2025-09-01T23:34:46,432 creating build/lib/pyemc/emc/examples/setup/chemistry/multiphase 2025-09-01T23:34:46,433 copying pyemc/emc/examples/setup/chemistry/multiphase/multiphase.esh -> build/lib/pyemc/emc/examples/setup/chemistry/multiphase 2025-09-01T23:34:46,436 creating build/lib/pyemc/emc/examples/setup/chemistry/qm 2025-09-01T23:34:46,437 copying pyemc/emc/examples/setup/chemistry/qm/setup.esh -> build/lib/pyemc/emc/examples/setup/chemistry/qm 2025-09-01T23:34:46,440 creating build/lib/pyemc/emc/examples/setup/chemistry/surface 2025-09-01T23:34:46,441 copying pyemc/emc/examples/setup/chemistry/surface/lmp2pdb.emc -> build/lib/pyemc/emc/examples/setup/chemistry/surface 2025-09-01T23:34:46,444 copying pyemc/emc/examples/setup/chemistry/surface/surface.esh -> build/lib/pyemc/emc/examples/setup/chemistry/surface 2025-09-01T23:34:46,447 copying pyemc/emc/examples/setup/chemistry/surface/lammps.sh -> build/lib/pyemc/emc/examples/setup/chemistry/surface 2025-09-01T23:34:46,450 creating build/lib/pyemc/emc/examples/setup/chemistry/record 2025-09-01T23:34:46,451 copying pyemc/emc/examples/setup/chemistry/record/fullerene.esh -> build/lib/pyemc/emc/examples/setup/chemistry/record 2025-09-01T23:34:46,454 copying pyemc/emc/examples/setup/chemistry/record/cat.sh -> build/lib/pyemc/emc/examples/setup/chemistry/record 2025-09-01T23:34:46,457 copying pyemc/emc/examples/setup/chemistry/record/exec.sh -> build/lib/pyemc/emc/examples/setup/chemistry/record 2025-09-01T23:34:46,459 creating build/lib/pyemc/emc/examples/setup/chemistry/gromacs 2025-09-01T23:34:46,461 copying pyemc/emc/examples/setup/chemistry/gromacs/setup.esh -> build/lib/pyemc/emc/examples/setup/chemistry/gromacs 2025-09-01T23:34:46,464 creating build/lib/pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:46,466 copying pyemc/emc/examples/setup/chemistry/field/generate/field.in -> build/lib/pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:46,469 copying pyemc/emc/examples/setup/chemistry/field/generate/field.prm -> build/lib/pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:46,472 copying pyemc/emc/examples/setup/chemistry/field/generate/build.emc -> build/lib/pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:46,474 copying pyemc/emc/examples/setup/chemistry/field/generate/field.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:46,477 creating build/lib/pyemc/emc/examples/setup/chemistry/field/charmm 2025-09-01T23:34:46,479 copying pyemc/emc/examples/setup/chemistry/field/charmm/chemistry.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/charmm 2025-09-01T23:34:46,482 copying pyemc/emc/examples/setup/chemistry/field/charmm/solution.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/charmm 2025-09-01T23:34:46,485 copying pyemc/emc/examples/setup/chemistry/field/charmm/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/field/charmm 2025-09-01T23:34:46,487 creating build/lib/pyemc/emc/examples/setup/chemistry/field/dpd 2025-09-01T23:34:46,488 copying pyemc/emc/examples/setup/chemistry/field/dpd/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/field/dpd 2025-09-01T23:34:46,490 copying pyemc/emc/examples/setup/chemistry/field/dpd/name.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/dpd 2025-09-01T23:34:46,492 creating build/lib/pyemc/emc/examples/setup/chemistry/field/pcff 2025-09-01T23:34:46,493 copying pyemc/emc/examples/setup/chemistry/field/pcff/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/field/pcff 2025-09-01T23:34:46,496 copying pyemc/emc/examples/setup/chemistry/field/pcff/name.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/pcff 2025-09-01T23:34:46,498 creating build/lib/pyemc/emc/examples/setup/chemistry/field/trappe 2025-09-01T23:34:46,499 copying pyemc/emc/examples/setup/chemistry/field/trappe/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/field/trappe 2025-09-01T23:34:46,502 copying pyemc/emc/examples/setup/chemistry/field/trappe/name.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/trappe 2025-09-01T23:34:46,504 creating build/lib/pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:46,505 copying pyemc/emc/examples/setup/chemistry/field/user/polymer.top -> build/lib/pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:46,507 copying pyemc/emc/examples/setup/chemistry/field/user/polymer.in -> build/lib/pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:46,509 copying pyemc/emc/examples/setup/chemistry/field/user/polymer.prm -> build/lib/pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:46,511 copying pyemc/emc/examples/setup/chemistry/field/user/polymer.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:46,514 copying pyemc/emc/examples/setup/chemistry/field/user/build.emc -> build/lib/pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:46,516 creating build/lib/pyemc/emc/examples/setup/chemistry/field/lj 2025-09-01T23:34:46,517 copying pyemc/emc/examples/setup/chemistry/field/lj/field.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/lj 2025-09-01T23:34:46,519 creating build/lib/pyemc/emc/examples/setup/chemistry/field/opls/ua 2025-09-01T23:34:46,521 copying pyemc/emc/examples/setup/chemistry/field/opls/ua/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/field/opls/ua 2025-09-01T23:34:46,523 copying pyemc/emc/examples/setup/chemistry/field/opls/ua/name.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/opls/ua 2025-09-01T23:34:46,525 creating build/lib/pyemc/emc/examples/setup/chemistry/field/opls/water 2025-09-01T23:34:46,526 copying pyemc/emc/examples/setup/chemistry/field/opls/water/water.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/opls/water 2025-09-01T23:34:46,528 creating build/lib/pyemc/emc/examples/setup/chemistry/field/opls/aa 2025-09-01T23:34:46,530 copying pyemc/emc/examples/setup/chemistry/field/opls/aa/setup.sh -> build/lib/pyemc/emc/examples/setup/chemistry/field/opls/aa 2025-09-01T23:34:46,532 copying pyemc/emc/examples/setup/chemistry/field/opls/aa/name.esh -> build/lib/pyemc/emc/examples/setup/chemistry/field/opls/aa 2025-09-01T23:34:46,534 creating build/lib/pyemc/emc/examples/setup/environment/green-kubo 2025-09-01T23:34:46,536 copying pyemc/emc/examples/setup/environment/green-kubo/viscosity.esh -> build/lib/pyemc/emc/examples/setup/environment/green-kubo 2025-09-01T23:34:46,539 creating build/lib/pyemc/emc/examples/setup/environment/t_glass 2025-09-01T23:34:46,540 copying pyemc/emc/examples/setup/environment/t_glass/README -> build/lib/pyemc/emc/examples/setup/environment/t_glass 2025-09-01T23:34:46,542 creating build/lib/pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:46,543 copying pyemc/emc/examples/setup/environment/t_glass/setup/2023072610.esh -> build/lib/pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:46,545 copying pyemc/emc/examples/setup/environment/t_glass/setup/2023072601.esh -> build/lib/pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:46,548 copying pyemc/emc/examples/setup/environment/t_glass/setup/2023072611.esh -> build/lib/pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:46,550 copying pyemc/emc/examples/setup/environment/t_glass/setup/2023072600.esh -> build/lib/pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:46,553 creating build/lib/pyemc/emc/examples/setup/environment/nemd 2025-09-01T23:34:46,554 copying pyemc/emc/examples/setup/environment/nemd/shear.esh -> build/lib/pyemc/emc/examples/setup/environment/nemd 2025-09-01T23:34:46,556 creating build/lib/pyemc/emc/examples/setup/environment/field 2025-09-01T23:34:46,557 copying pyemc/emc/examples/setup/environment/field/README -> build/lib/pyemc/emc/examples/setup/environment/field 2025-09-01T23:34:46,560 creating build/lib/pyemc/emc/examples/setup/environment/field/chemistry/stages/lj 2025-09-01T23:34:46,562 copying pyemc/emc/examples/setup/environment/field/chemistry/stages/lj/stage.esh -> build/lib/pyemc/emc/examples/setup/environment/field/chemistry/stages/lj 2025-09-01T23:34:46,564 creating build/lib/pyemc/emc/examples/setup/environment/field/chemistry/scripts 2025-09-01T23:34:46,565 copying pyemc/emc/examples/setup/environment/field/chemistry/scripts/lj.sh -> build/lib/pyemc/emc/examples/setup/environment/field/chemistry/scripts 2025-09-01T23:34:46,568 creating build/lib/pyemc/emc/examples/setup/environment/field/chemistry/field/stage 2025-09-01T23:34:46,569 copying pyemc/emc/examples/setup/environment/field/chemistry/field/stage/lj.prm -> build/lib/pyemc/emc/examples/setup/environment/field/chemistry/field/stage 2025-09-01T23:34:46,571 creating build/lib/pyemc/emc/examples/setup/environment/field/setup 2025-09-01T23:34:46,572 copying pyemc/emc/examples/setup/environment/field/setup/lj.esh -> build/lib/pyemc/emc/examples/setup/environment/field/setup 2025-09-01T23:34:46,575 copying pyemc/emc/examples/setup/environment/field/setup/2018070100.esh -> build/lib/pyemc/emc/examples/setup/environment/field/setup 2025-09-01T23:34:46,577 creating build/lib/pyemc/emc/field 2025-09-01T23:34:46,578 copying pyemc/emc/field/.DS_Store -> build/lib/pyemc/emc/field 2025-09-01T23:34:46,581 creating build/lib/pyemc/emc/field/martini 2025-09-01T23:34:46,582 copying pyemc/emc/field/martini/.DS_Store -> build/lib/pyemc/emc/field/martini 2025-09-01T23:34:46,584 creating build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,585 copying pyemc/emc/field/martini/v2.0/sugars.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,588 copying pyemc/emc/field/martini/v2.0/cholesterol.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,591 copying pyemc/emc/field/martini/v2.0/lipids.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,594 copying pyemc/emc/field/martini/v2.0/polymers.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,597 copying pyemc/emc/field/martini/v2.0/surfactants.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,599 copying pyemc/emc/field/martini/v2.0/xemium.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,601 copying pyemc/emc/field/martini/v2.0/martini.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,605 copying pyemc/emc/field/martini/v2.0/file.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,607 copying pyemc/emc/field/martini/v2.0/convert.sh -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,609 copying pyemc/emc/field/martini/v2.0/other.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,612 copying pyemc/emc/field/martini/v2.0/convert.out -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,615 copying pyemc/emc/field/martini/v2.0/solvents.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,618 copying pyemc/emc/field/martini/v2.0/aminoacids.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,621 copying pyemc/emc/field/martini/v2.0/ions.prm -> build/lib/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:46,623 creating build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,624 copying pyemc/emc/field/martini/v2.0/src/surfactants.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,627 copying pyemc/emc/field/martini/v2.0/src/lipids.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,630 copying pyemc/emc/field/martini/v2.0/src/cholesterol.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,633 copying pyemc/emc/field/martini/v2.0/src/polymers.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,639 copying pyemc/emc/field/martini/v2.0/src/aminoacids.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,643 copying pyemc/emc/field/martini/v2.0/src/other.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,649 copying pyemc/emc/field/martini/v2.0/src/solvents.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,653 copying pyemc/emc/field/martini/v2.0/src/sugars.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,657 copying pyemc/emc/field/martini/v2.0/src/martini.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,664 copying pyemc/emc/field/martini/v2.0/src/other.prm -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,669 copying pyemc/emc/field/martini/v2.0/src/xemium.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,673 copying pyemc/emc/field/martini/v2.0/src/ions.itp -> build/lib/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:46,676 creating build/lib/pyemc/emc/field/martini/v3.0 2025-09-01T23:34:46,677 copying pyemc/emc/field/martini/v3.0/martini.prm.gz -> build/lib/pyemc/emc/field/martini/v3.0 2025-09-01T23:34:46,740 copying pyemc/emc/field/martini/v3.0/sugars.prm.gz -> build/lib/pyemc/emc/field/martini/v3.0 2025-09-01T23:34:46,742 copying pyemc/emc/field/martini/v3.0/convert.sh -> build/lib/pyemc/emc/field/martini/v3.0 2025-09-01T23:34:46,745 copying pyemc/emc/field/martini/v3.0/convert.out -> build/lib/pyemc/emc/field/martini/v3.0 2025-09-01T23:34:46,747 creating build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:46,748 copying pyemc/emc/field/martini/v3.0/src/phospholipids.itp -> build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:46,753 copying pyemc/emc/field/martini/v3.0/src/sugars_v2.itp -> build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:46,756 copying pyemc/emc/field/martini/v3.0/src/solvents.itp -> build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:46,759 copying pyemc/emc/field/martini/v3.0/src/small_molecules.itp -> build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:46,762 copying pyemc/emc/field/martini/v3.0/src/sugars.itp -> build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:46,764 copying pyemc/emc/field/martini/v3.0/src/martini.itp -> build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:47,004 copying pyemc/emc/field/martini/v3.0/src/nucleobases.itp -> build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:47,006 copying pyemc/emc/field/martini/v3.0/src/small_molecules_v2.itp -> build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:47,010 copying pyemc/emc/field/martini/v3.0/src/ions.itp -> build/lib/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:47,013 creating build/lib/pyemc/emc/field/gauss 2025-09-01T23:34:47,014 copying pyemc/emc/field/gauss/general.prm -> build/lib/pyemc/emc/field/gauss 2025-09-01T23:34:47,016 creating build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,018 copying pyemc/emc/field/charmm/c36a/prot.prm -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,023 copying pyemc/emc/field/charmm/c36a/na.top -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,026 copying pyemc/emc/field/charmm/c36a/prot.top -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,029 copying pyemc/emc/field/charmm/c36a/ethers.prm -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,032 copying pyemc/emc/field/charmm/c36a/carb.prm -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,035 copying pyemc/emc/field/charmm/c36a/lipid.prm -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,038 copying pyemc/emc/field/charmm/c36a/lipid.top -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,041 copying pyemc/emc/field/charmm/c36a/ethers.top -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,044 copying pyemc/emc/field/charmm/c36a/carb.top -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,047 copying pyemc/emc/field/charmm/c36a/cgenff.prm -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,055 copying pyemc/emc/field/charmm/c36a/water_ions.top -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,057 copying pyemc/emc/field/charmm/c36a/water_ions.prm -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,061 copying pyemc/emc/field/charmm/c36a/na.prm -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,064 copying pyemc/emc/field/charmm/c36a/cgenff.top -> build/lib/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:47,068 creating build/lib/pyemc/emc/field/charmm/iff 2025-09-01T23:34:47,069 copying pyemc/emc/field/charmm/iff/caso4.prm -> build/lib/pyemc/emc/field/charmm/iff 2025-09-01T23:34:47,072 copying pyemc/emc/field/charmm/iff/al2o3_nb.prm -> build/lib/pyemc/emc/field/charmm/iff 2025-09-01T23:34:47,075 copying pyemc/emc/field/charmm/iff/convert.sh -> build/lib/pyemc/emc/field/charmm/iff 2025-09-01T23:34:47,077 copying pyemc/emc/field/charmm/iff/clay.top -> build/lib/pyemc/emc/field/charmm/iff 2025-09-01T23:34:47,080 copying pyemc/emc/field/charmm/iff/clay.prm -> build/lib/pyemc/emc/field/charmm/iff 2025-09-01T23:34:47,082 copying pyemc/emc/field/charmm/iff/al2o3_nb.top -> build/lib/pyemc/emc/field/charmm/iff 2025-09-01T23:34:47,085 copying pyemc/emc/field/charmm/iff/caso4.top -> build/lib/pyemc/emc/field/charmm/iff 2025-09-01T23:34:47,087 creating build/lib/pyemc/emc/field/pcff_ore 2025-09-01T23:34:47,088 copying pyemc/emc/field/pcff_ore/pcff_ore.frc -> build/lib/pyemc/emc/field/pcff_ore 2025-09-01T23:34:47,098 copying pyemc/emc/field/pcff_ore/pcff_ore_templates.dat -> build/lib/pyemc/emc/field/pcff_ore 2025-09-01T23:34:47,101 creating build/lib/pyemc/emc/field/dpd 2025-09-01T23:34:47,103 copying pyemc/emc/field/dpd/general.prm -> build/lib/pyemc/emc/field/dpd 2025-09-01T23:34:47,105 copying pyemc/emc/field/dpd/srp.prm -> build/lib/pyemc/emc/field/dpd 2025-09-01T23:34:47,107 creating build/lib/pyemc/emc/field/polystyrene 2025-09-01T23:34:47,109 copying pyemc/emc/field/polystyrene/smoothed_m-r.m -> build/lib/pyemc/emc/field/polystyrene 2025-09-01T23:34:47,112 copying pyemc/emc/field/polystyrene/README -> build/lib/pyemc/emc/field/polystyrene 2025-09-01T23:34:47,114 copying pyemc/emc/field/polystyrene/smoothed_e-e.m -> build/lib/pyemc/emc/field/polystyrene 2025-09-01T23:34:47,117 copying pyemc/emc/field/polystyrene/smoothed_r-e.m -> build/lib/pyemc/emc/field/polystyrene 2025-09-01T23:34:47,120 copying pyemc/emc/field/polystyrene/smoothed_r-r.m -> build/lib/pyemc/emc/field/polystyrene 2025-09-01T23:34:47,123 copying pyemc/emc/field/polystyrene/smoothed_m-e.m -> build/lib/pyemc/emc/field/polystyrene 2025-09-01T23:34:47,126 copying pyemc/emc/field/polystyrene/smoothed_m-m.m -> build/lib/pyemc/emc/field/polystyrene 2025-09-01T23:34:47,129 creating build/lib/pyemc/emc/field/uff/src 2025-09-01T23:34:47,131 copying pyemc/emc/field/uff/src/README -> build/lib/pyemc/emc/field/uff/src 2025-09-01T23:34:47,133 copying pyemc/emc/field/uff/src/uff.ff -> build/lib/pyemc/emc/field/uff/src 2025-09-01T23:34:47,136 creating build/lib/pyemc/emc/field/pcff 2025-09-01T23:34:47,137 copying pyemc/emc/field/pcff/pcff_templates.dat -> build/lib/pyemc/emc/field/pcff 2025-09-01T23:34:47,141 copying pyemc/emc/field/pcff/pcff.rlb -> build/lib/pyemc/emc/field/pcff 2025-09-01T23:34:47,143 copying pyemc/emc/field/pcff/pcff.frc -> build/lib/pyemc/emc/field/pcff 2025-09-01T23:34:47,150 creating build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,152 copying pyemc/emc/field/trappe/2014/list.pl -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,155 copying pyemc/emc/field/trappe/2014/e2k.sh -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,157 copying pyemc/emc/field/trappe/2014/trappe-ua.field -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,162 copying pyemc/emc/field/trappe/2014/trappe-ua.define.old -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,165 copying pyemc/emc/field/trappe/2014/trappe-ua.top -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,167 copying pyemc/emc/field/trappe/2014/trappe-eh.define -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,170 copying pyemc/emc/field/trappe/2014/torsions.txt -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,172 copying pyemc/emc/field/trappe/2014/convert.sh -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,175 copying pyemc/emc/field/trappe/2014/convert.emc -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,177 copying pyemc/emc/field/trappe/2014/trappe-ua.prm -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,180 copying pyemc/emc/field/trappe/2014/trappe-ua.define -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,183 copying pyemc/emc/field/trappe/2014/torsions.pl -> build/lib/pyemc/emc/field/trappe/2014 2025-09-01T23:34:47,185 creating build/lib/pyemc/emc/field/sdk/v1.0 2025-09-01T23:34:47,187 copying pyemc/emc/field/sdk/v1.0/sdk.define -> build/lib/pyemc/emc/field/sdk/v1.0 2025-09-01T23:34:47,189 copying pyemc/emc/field/sdk/v1.0/convert.sh -> build/lib/pyemc/emc/field/sdk/v1.0 2025-09-01T23:34:47,192 copying pyemc/emc/field/sdk/v1.0/sdk.prm -> build/lib/pyemc/emc/field/sdk/v1.0 2025-09-01T23:34:47,194 creating build/lib/pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:47,196 copying pyemc/emc/field/sdk/v1.0/src/convert.sh -> build/lib/pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:47,198 copying pyemc/emc/field/sdk/v1.0/src/mass.dat -> build/lib/pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:47,200 copying pyemc/emc/field/sdk/v1.0/src/pair.dat -> build/lib/pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:47,203 copying pyemc/emc/field/sdk/v1.0/src/bond.dat -> build/lib/pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:47,206 copying pyemc/emc/field/sdk/v1.0/src/angle.dat -> build/lib/pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:47,208 copying pyemc/emc/field/sdk/v1.0/src/sdk.xlsx -> build/lib/pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:47,213 copying pyemc/emc/field/sdk/v1.0/src/torsion.dat -> build/lib/pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:47,215 creating build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,216 copying pyemc/emc/field/cff/sio2_templates.dat -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,218 copying pyemc/emc/field/cff/caso4.frc -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,221 copying pyemc/emc/field/cff/c3a.frc -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,224 copying pyemc/emc/field/cff/zno_templates.dat -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,226 copying pyemc/emc/field/cff/sio2.frc -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,229 copying pyemc/emc/field/cff/al2o3_templates.dat -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,231 copying pyemc/emc/field/cff/template.frc -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,234 copying pyemc/emc/field/cff/template_templates.dat -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,236 copying pyemc/emc/field/cff/caso4_templates.dat -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,239 copying pyemc/emc/field/cff/c3s.frc -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,242 copying pyemc/emc/field/cff/zno.frc -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,245 copying pyemc/emc/field/cff/c3a_templates.dat -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,247 copying pyemc/emc/field/cff/al2o3.frc -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,250 copying pyemc/emc/field/cff/c3s_templates.dat -> build/lib/pyemc/emc/field/cff 2025-09-01T23:34:47,252 creating build/lib/pyemc/emc/field/born/2016 2025-09-01T23:34:47,254 copying pyemc/emc/field/born/2016/guillot.prm -> build/lib/pyemc/emc/field/born/2016 2025-09-01T23:34:47,257 copying pyemc/emc/field/born/2016/matsui.prm -> build/lib/pyemc/emc/field/born/2016 2025-09-01T23:34:47,259 copying pyemc/emc/field/born/2016/matsui.top -> build/lib/pyemc/emc/field/born/2016 2025-09-01T23:34:47,262 copying pyemc/emc/field/born/2016/convert.sh -> build/lib/pyemc/emc/field/born/2016 2025-09-01T23:34:47,264 copying pyemc/emc/field/born/2016/guillot.define -> build/lib/pyemc/emc/field/born/2016 2025-09-01T23:34:47,266 copying pyemc/emc/field/born/2016/guillot.top -> build/lib/pyemc/emc/field/born/2016 2025-09-01T23:34:47,269 copying pyemc/emc/field/born/2016/matsui.define -> build/lib/pyemc/emc/field/born/2016 2025-09-01T23:34:47,271 creating build/lib/pyemc/emc/field/opls/2024 2025-09-01T23:34:47,273 copying pyemc/emc/field/opls/2024/opls-aa.prm -> build/lib/pyemc/emc/field/opls/2024 2025-09-01T23:34:47,276 copying pyemc/emc/field/opls/2024/opls-aa.define -> build/lib/pyemc/emc/field/opls/2024 2025-09-01T23:34:47,281 copying pyemc/emc/field/opls/2024/opls-ua.define -> build/lib/pyemc/emc/field/opls/2024 2025-09-01T23:34:47,284 copying pyemc/emc/field/opls/2024/opls-ua.top -> build/lib/pyemc/emc/field/opls/2024 2025-09-01T23:34:47,286 copying pyemc/emc/field/opls/2024/opls-ua.prm -> build/lib/pyemc/emc/field/opls/2024 2025-09-01T23:34:47,290 copying pyemc/emc/field/opls/2024/opls-aa.top -> build/lib/pyemc/emc/field/opls/2024 2025-09-01T23:34:47,292 creating build/lib/pyemc/emc/field/opls/2024/src 2025-09-01T23:34:47,294 copying pyemc/emc/field/opls/2024/src/opls-ua.xref -> build/lib/pyemc/emc/field/opls/2024/src 2025-09-01T23:34:47,296 copying pyemc/emc/field/opls/2024/src/reoplsff.zip -> build/lib/pyemc/emc/field/opls/2024/src 2025-09-01T23:34:47,300 copying pyemc/emc/field/opls/2024/src/oplsaa.sb -> build/lib/pyemc/emc/field/opls/2024/src 2025-09-01T23:34:47,304 copying pyemc/emc/field/opls/2024/src/opls-aa.xref -> build/lib/pyemc/emc/field/opls/2024/src 2025-09-01T23:34:47,309 copying pyemc/emc/field/opls/2024/src/oplsaa.par -> build/lib/pyemc/emc/field/opls/2024/src 2025-09-01T23:34:47,317 creating build/lib/pyemc/emc/field/opls/2012 2025-09-01T23:34:47,318 copying pyemc/emc/field/opls/2012/opls-aa.prm -> build/lib/pyemc/emc/field/opls/2012 2025-09-01T23:34:47,322 copying pyemc/emc/field/opls/2012/opls-aa.define -> build/lib/pyemc/emc/field/opls/2012 2025-09-01T23:34:47,325 copying pyemc/emc/field/opls/2012/convert.sh -> build/lib/pyemc/emc/field/opls/2012 2025-09-01T23:34:47,327 copying pyemc/emc/field/opls/2012/opls-ua.define -> build/lib/pyemc/emc/field/opls/2012 2025-09-01T23:34:47,330 copying pyemc/emc/field/opls/2012/opls-ua.top -> build/lib/pyemc/emc/field/opls/2012 2025-09-01T23:34:47,334 copying pyemc/emc/field/opls/2012/opls-aa.debug -> build/lib/pyemc/emc/field/opls/2012 2025-09-01T23:34:47,337 copying pyemc/emc/field/opls/2012/opls-ua.prm -> build/lib/pyemc/emc/field/opls/2012 2025-09-01T23:34:47,340 copying pyemc/emc/field/opls/2012/opls-aa.top -> build/lib/pyemc/emc/field/opls/2012 2025-09-01T23:34:47,344 creating build/lib/pyemc/emc/field/opls/2012/src 2025-09-01T23:34:47,345 copying pyemc/emc/field/opls/2012/src/trim.pl -> build/lib/pyemc/emc/field/opls/2012/src 2025-09-01T23:34:47,347 copying pyemc/emc/field/opls/2012/src/reoplsff.zip -> build/lib/pyemc/emc/field/opls/2012/src 2025-09-01T23:34:47,352 copying pyemc/emc/field/opls/2012/src/oplsaa.sb -> build/lib/pyemc/emc/field/opls/2012/src 2025-09-01T23:34:47,356 copying pyemc/emc/field/opls/2012/src/add.txt -> build/lib/pyemc/emc/field/opls/2012/src 2025-09-01T23:34:47,358 copying pyemc/emc/field/opls/2012/src/oplsaa.par -> build/lib/pyemc/emc/field/opls/2012/src 2025-09-01T23:34:47,367 creating build/lib/pyemc/emc/field/compass 2025-09-01T23:34:47,368 copying pyemc/emc/field/compass/compass.frc -> build/lib/pyemc/emc/field/compass 2025-09-01T23:34:47,373 copying pyemc/emc/field/compass/compass_templates.dat -> build/lib/pyemc/emc/field/compass 2025-09-01T23:34:47,403 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-01T23:34:47,403 !! 2025-09-01T23:34:47,404 ******************************************************************************** 2025-09-01T23:34:47,405 Please avoid running ``setup.py`` directly. 2025-09-01T23:34:47,406 Instead, use pypa/build, pypa/installer or other 2025-09-01T23:34:47,406 standards-based tools. 2025-09-01T23:34:47,408 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-01T23:34:47,408 or your builds will no longer be supported. 2025-09-01T23:34:47,410 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-01T23:34:47,410 ******************************************************************************** 2025-09-01T23:34:47,411 !! 2025-09-01T23:34:47,412 self.initialize_options() 2025-09-01T23:34:47,432 installing to build/bdist.linux-armv7l/wheel 2025-09-01T23:34:47,432 running install 2025-09-01T23:34:47,456 running install_lib 2025-09-01T23:34:47,482 creating build/bdist.linux-armv7l/wheel 2025-09-01T23:34:47,484 creating build/bdist.linux-armv7l/wheel/pyemc 2025-09-01T23:34:47,486 creating build/bdist.linux-armv7l/wheel/pyemc/emc 2025-09-01T23:34:47,487 creating build/bdist.linux-armv7l/wheel/pyemc/emc/bin 2025-09-01T23:34:47,489 copying build/lib/pyemc/emc/bin/emc_win32.exe -> build/bdist.linux-armv7l/wheel/./pyemc/emc/bin 2025-09-01T23:34:47,784 copying build/lib/pyemc/emc/bin/emc_linux_x86_64 -> build/bdist.linux-armv7l/wheel/./pyemc/emc/bin 2025-09-01T23:34:47,922 copying build/lib/pyemc/emc/bin/emc_macos -> build/bdist.linux-armv7l/wheel/./pyemc/emc/bin 2025-09-01T23:34:48,085 copying build/lib/pyemc/emc/bin/emc_linux_aarch64 -> build/bdist.linux-armv7l/wheel/./pyemc/emc/bin 2025-09-01T23:34:48,187 creating build/bdist.linux-armv7l/wheel/pyemc/emc/scripts 2025-09-01T23:34:48,189 copying build/lib/pyemc/emc/scripts/prm_search.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,191 copying build/lib/pyemc/emc/scripts/emc_error.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,193 copying build/lib/pyemc/emc/scripts/run_host.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,195 copying build/lib/pyemc/emc/scripts/myjobs.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,197 copying build/lib/pyemc/emc/scripts/trj_reduce.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,199 copying build/lib/pyemc/emc/scripts/prm_extract.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,201 copying build/lib/pyemc/emc/scripts/prm_reduce.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,203 copying build/lib/pyemc/emc/scripts/openff.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,205 copying build/lib/pyemc/emc/scripts/emc2lammps.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,207 copying build/lib/pyemc/emc/scripts/run_stat.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,209 copying build/lib/pyemc/emc/scripts/prm_list_types.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,211 copying build/lib/pyemc/emc/scripts/prm_duplicate.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,213 copying build/lib/pyemc/emc/scripts/hold.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,215 copying build/lib/pyemc/emc/scripts/emc_setup.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,222 copying build/lib/pyemc/emc/scripts/view_record.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,224 copying build/lib/pyemc/emc/scripts/lammps2emc.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,226 copying build/lib/pyemc/emc/scripts/change_header.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,228 copying build/lib/pyemc/emc/scripts/replace.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,230 copying build/lib/pyemc/emc/scripts/.DS_Store -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,233 copying build/lib/pyemc/emc/scripts/emc_trappe.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,235 copying build/lib/pyemc/emc/scripts/prm_reduce.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,237 copying build/lib/pyemc/emc/scripts/change.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,240 copying build/lib/pyemc/emc/scripts/view_vmd.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,242 copying build/lib/pyemc/emc/scripts/emc_opls.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,246 copying build/lib/pyemc/emc/scripts/emc.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,249 copying build/lib/pyemc/emc/scripts/lammps2pdb.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,251 copying build/lib/pyemc/emc/scripts/pdb_extract.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,254 creating build/bdist.linux-armv7l/wheel/pyemc/emc/scripts/modules 2025-09-01T23:34:48,256 creating build/bdist.linux-armv7l/wheel/pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,257 copying build/lib/pyemc/emc/scripts/modules/EMC/Hash.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,260 copying build/lib/pyemc/emc/scripts/modules/EMC/Residues.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,262 copying build/lib/pyemc/emc/scripts/modules/EMC/Atoms.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,264 copying build/lib/pyemc/emc/scripts/modules/EMC/Dist.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,266 copying build/lib/pyemc/emc/scripts/modules/EMC/Element.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,269 copying build/lib/pyemc/emc/scripts/modules/EMC/Parameters.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,271 copying build/lib/pyemc/emc/scripts/modules/EMC/PDB.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,274 copying build/lib/pyemc/emc/scripts/modules/EMC/LAMMPS.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,277 copying build/lib/pyemc/emc/scripts/modules/EMC/List.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,279 copying build/lib/pyemc/emc/scripts/modules/EMC/Test.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,281 copying build/lib/pyemc/emc/scripts/modules/EMC/Environment.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,284 copying build/lib/pyemc/emc/scripts/modules/EMC/Fields.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,287 copying build/lib/pyemc/emc/scripts/modules/EMC/Common.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,290 copying build/lib/pyemc/emc/scripts/modules/EMC/Matrix.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,292 copying build/lib/pyemc/emc/scripts/modules/EMC/Rules.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,295 copying build/lib/pyemc/emc/scripts/modules/EMC/Options.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,297 copying build/lib/pyemc/emc/scripts/modules/EMC/Types.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,300 copying build/lib/pyemc/emc/scripts/modules/EMC/Job.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,304 copying build/lib/pyemc/emc/scripts/modules/EMC/Message.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,307 copying build/lib/pyemc/emc/scripts/modules/EMC/Analyze.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,309 copying build/lib/pyemc/emc/scripts/modules/EMC/MD.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,311 copying build/lib/pyemc/emc/scripts/modules/EMC/IO.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,314 copying build/lib/pyemc/emc/scripts/modules/EMC/Profiles.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,316 copying build/lib/pyemc/emc/scripts/modules/EMC/Variables.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,318 copying build/lib/pyemc/emc/scripts/modules/EMC/XYZ.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,320 copying build/lib/pyemc/emc/scripts/modules/EMC/Chemistry.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,323 copying build/lib/pyemc/emc/scripts/modules/EMC/Global.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,326 copying build/lib/pyemc/emc/scripts/modules/EMC/Polymers.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,328 copying build/lib/pyemc/emc/scripts/modules/EMC/Mass.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,330 copying build/lib/pyemc/emc/scripts/modules/EMC/GROMACS.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,334 copying build/lib/pyemc/emc/scripts/modules/EMC/Groups.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,336 copying build/lib/pyemc/emc/scripts/modules/EMC/EMC.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,341 copying build/lib/pyemc/emc/scripts/modules/EMC/Item.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,344 copying build/lib/pyemc/emc/scripts/modules/EMC/Script.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,346 copying build/lib/pyemc/emc/scripts/modules/EMC/References.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,348 copying build/lib/pyemc/emc/scripts/modules/EMC/NAMD.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,351 copying build/lib/pyemc/emc/scripts/modules/EMC/Increments.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,353 copying build/lib/pyemc/emc/scripts/modules/EMC/Math.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,355 copying build/lib/pyemc/emc/scripts/modules/EMC/Clusters.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,358 copying build/lib/pyemc/emc/scripts/modules/EMC/Struct.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules/EMC 2025-09-01T23:34:48,360 copying build/lib/pyemc/emc/scripts/modules/EMC.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules 2025-09-01T23:34:48,362 copying build/lib/pyemc/emc/scripts/modules/EMCField.pm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/modules 2025-09-01T23:34:48,365 copying build/lib/pyemc/emc/scripts/pdb.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,368 creating build/bdist.linux-armv7l/wheel/pyemc/emc/scripts/analyze 2025-09-01T23:34:48,369 copying build/lib/pyemc/emc/scripts/analyze/harvest.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze 2025-09-01T23:34:48,371 copying build/lib/pyemc/emc/scripts/analyze/project.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze 2025-09-01T23:34:48,373 copying build/lib/pyemc/emc/scripts/analyze/files.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze 2025-09-01T23:34:48,375 copying build/lib/pyemc/emc/scripts/analyze/script.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze 2025-09-01T23:34:48,377 copying build/lib/pyemc/emc/scripts/analyze/last.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze 2025-09-01T23:34:48,379 creating build/bdist.linux-armv7l/wheel/pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:48,380 copying build/lib/pyemc/emc/scripts/analyze/sample/distance.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:48,382 copying build/lib/pyemc/emc/scripts/analyze/sample/gyration.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:48,384 copying build/lib/pyemc/emc/scripts/analyze/sample/bond.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:48,386 copying build/lib/pyemc/emc/scripts/analyze/sample/cavity.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:48,387 copying build/lib/pyemc/emc/scripts/analyze/sample/gr.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze/sample 2025-09-01T23:34:48,389 copying build/lib/pyemc/emc/scripts/analyze/cavity.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/analyze 2025-09-01T23:34:48,391 copying build/lib/pyemc/emc/scripts/lammps2lammps.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,393 copying build/lib/pyemc/emc/scripts/emc_align.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,395 copying build/lib/pyemc/emc/scripts/run.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,398 copying build/lib/pyemc/emc/scripts/insight2lammps.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,400 copying build/lib/pyemc/emc/scripts/try.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,402 copying build/lib/pyemc/emc/scripts/emc2volume.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,404 copying build/lib/pyemc/emc/scripts/emc_gromacs.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,406 copying build/lib/pyemc/emc/scripts/emc_sdk.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,409 copying build/lib/pyemc/emc/scripts/last.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,411 copying build/lib/pyemc/emc/scripts/xyz.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,413 copying build/lib/pyemc/emc/scripts/emc2pdb.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,415 copying build/lib/pyemc/emc/scripts/emc2insight.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,417 copying build/lib/pyemc/emc/scripts/pack.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,419 copying build/lib/pyemc/emc/scripts/avg_error.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,421 copying build/lib/pyemc/emc/scripts/emc_generate.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,423 copying build/lib/pyemc/emc/scripts/template.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,425 copying build/lib/pyemc/emc/scripts/qjobs -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,427 copying build/lib/pyemc/emc/scripts/emc_clean.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,429 copying build/lib/pyemc/emc/scripts/run_analyze.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,431 copying build/lib/pyemc/emc/scripts/run_restart.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,433 copying build/lib/pyemc/emc/scripts/emc.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,435 copying build/lib/pyemc/emc/scripts/average.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,437 copying build/lib/pyemc/emc/scripts/psf_charge.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,439 copying build/lib/pyemc/emc/scripts/emc_martini.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,442 creating build/bdist.linux-armv7l/wheel/pyemc/emc/scripts/coding 2025-09-01T23:34:48,444 copying build/lib/pyemc/emc/scripts/coding/hold.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/coding 2025-09-01T23:34:48,445 copying build/lib/pyemc/emc/scripts/coding/emc_parse_oper.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/coding 2025-09-01T23:34:48,447 copying build/lib/pyemc/emc/scripts/coding/cpmoddir.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/coding 2025-09-01T23:34:48,449 copying build/lib/pyemc/emc/scripts/coding/scrape.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/coding 2025-09-01T23:34:48,450 copying build/lib/pyemc/emc/scripts/coding/emc_comments.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/coding 2025-09-01T23:34:48,452 copying build/lib/pyemc/emc/scripts/coding/cpmod.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/coding 2025-09-01T23:34:48,454 copying build/lib/pyemc/emc/scripts/coding/header.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts/coding 2025-09-01T23:34:48,456 copying build/lib/pyemc/emc/scripts/emc2xyz.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,458 copying build/lib/pyemc/emc/scripts/prm_compare.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,460 copying build/lib/pyemc/emc/scripts/emc2emc.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,462 copying build/lib/pyemc/emc/scripts/emc2gromacs.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,463 copying build/lib/pyemc/emc/scripts/charmm2lammps.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,466 copying build/lib/pyemc/emc/scripts/traject2pdb.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,468 copying build/lib/pyemc/emc/scripts/emc_template.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,470 copying build/lib/pyemc/emc/scripts/emc2energy.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,471 copying build/lib/pyemc/emc/scripts/clean_restart.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/scripts 2025-09-01T23:34:48,474 creating build/bdist.linux-armv7l/wheel/pyemc/emc/check 2025-09-01T23:34:48,474 copying build/lib/pyemc/emc/check/checked.txt -> build/bdist.linux-armv7l/wheel/./pyemc/emc/check 2025-09-01T23:34:48,476 copying build/lib/pyemc/emc/check/void_funcion_n.txt -> build/bdist.linux-armv7l/wheel/./pyemc/emc/check 2025-09-01T23:34:48,478 copying build/lib/pyemc/emc/check/notes.txt -> build/bdist.linux-armv7l/wheel/./pyemc/emc/check 2025-09-01T23:34:48,482 copying build/lib/pyemc/emc/check/all.txt -> build/bdist.linux-armv7l/wheel/./pyemc/emc/check 2025-09-01T23:34:48,486 copying build/lib/pyemc/emc/check/check.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/check 2025-09-01T23:34:48,488 copying build/lib/pyemc/emc/LICENSE -> build/bdist.linux-armv7l/wheel/./pyemc/emc 2025-09-01T23:34:48,490 copying build/lib/pyemc/emc/README -> build/bdist.linux-armv7l/wheel/./pyemc/emc 2025-09-01T23:34:48,493 creating build/bdist.linux-armv7l/wheel/pyemc/emc/docs 2025-09-01T23:34:48,494 copying build/lib/pyemc/emc/docs/emc.pdf -> build/bdist.linux-armv7l/wheel/./pyemc/emc/docs 2025-09-01T23:34:48,533 copying build/lib/pyemc/emc/HISTORY -> build/bdist.linux-armv7l/wheel/./pyemc/emc 2025-09-01T23:34:48,536 creating build/bdist.linux-armv7l/wheel/pyemc/emc/vmd 2025-09-01T23:34:48,537 copying build/lib/pyemc/emc/vmd/README -> build/bdist.linux-armv7l/wheel/./pyemc/emc/vmd 2025-09-01T23:34:48,540 creating build/bdist.linux-armv7l/wheel/pyemc/emc/vmd/packages 2025-09-01T23:34:48,541 copying build/lib/pyemc/emc/vmd/packages/textview.tcl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/vmd/packages 2025-09-01T23:34:48,543 copying build/lib/pyemc/emc/vmd/packages/options.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/vmd/packages 2025-09-01T23:34:48,546 copying build/lib/pyemc/emc/vmd/packages/gui.tcl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/vmd/packages 2025-09-01T23:34:48,554 copying build/lib/pyemc/emc/vmd/license.txt -> build/bdist.linux-armv7l/wheel/./pyemc/emc/vmd 2025-09-01T23:34:48,556 copying build/lib/pyemc/emc/vmd/packages.tcl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/vmd 2025-09-01T23:34:48,559 creating build/bdist.linux-armv7l/wheel/pyemc/emc/templates 2025-09-01T23:34:48,559 copying build/lib/pyemc/emc/templates/import.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/templates 2025-09-01T23:34:48,561 copying build/lib/pyemc/emc/templates/chemistry.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/templates 2025-09-01T23:34:48,563 copying build/lib/pyemc/emc/templates/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/templates 2025-09-01T23:34:48,565 copying build/lib/pyemc/emc/templates/restart.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/templates 2025-09-01T23:34:48,566 copying build/lib/pyemc/emc/templates/cluster.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/templates 2025-09-01T23:34:48,568 copying build/lib/pyemc/emc/templates/field.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/templates 2025-09-01T23:34:48,570 copying build/lib/pyemc/emc/templates/field.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/templates 2025-09-01T23:34:48,571 copying build/lib/pyemc/emc/templates/environment.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/templates 2025-09-01T23:34:48,574 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples 2025-09-01T23:34:48,575 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup 2025-09-01T23:34:48,577 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry 2025-09-01T23:34:48,578 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer 2025-09-01T23:34:48,580 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer/dendrimer 2025-09-01T23:34:48,581 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/dendrimer/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/dendrimer 2025-09-01T23:34:48,583 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/dendrimer/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/dendrimer 2025-09-01T23:34:48,585 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer/star 2025-09-01T23:34:48,586 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/star/setup.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/star 2025-09-01T23:34:48,588 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:48,589 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/homopolymer/polymer.in -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:48,591 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/homopolymer/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:48,593 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/homopolymer/build.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:48,595 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/homopolymer/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/homopolymer 2025-09-01T23:34:48,598 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer/random 2025-09-01T23:34:48,599 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/random/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/random 2025-09-01T23:34:48,601 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/random/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/random 2025-09-01T23:34:48,603 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:48,604 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:48,606 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block/block.in -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:48,608 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block/build.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:48,610 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:48,612 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/random_block/block.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/random_block 2025-09-01T23:34:48,614 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer/biphase 2025-09-01T23:34:48,615 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/biphase/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/biphase 2025-09-01T23:34:48,617 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/biphase/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/biphase 2025-09-01T23:34:48,620 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer/block 2025-09-01T23:34:48,621 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/block/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/block 2025-09-01T23:34:48,622 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/block/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/block 2025-09-01T23:34:48,625 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer/copolymer 2025-09-01T23:34:48,626 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/copolymer/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/copolymer 2025-09-01T23:34:48,629 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:48,630 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/alternate/dpd.in -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:48,632 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/alternate/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:48,633 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/alternate/build.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:48,636 copying build/lib/pyemc/emc/examples/setup/chemistry/polymer/alternate/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/polymer/alternate 2025-09-01T23:34:48,638 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/bulk 2025-09-01T23:34:48,639 copying build/lib/pyemc/emc/examples/setup/chemistry/bulk/setup.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/bulk 2025-09-01T23:34:48,642 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/multiphase 2025-09-01T23:34:48,643 copying build/lib/pyemc/emc/examples/setup/chemistry/multiphase/multiphase.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/multiphase 2025-09-01T23:34:48,645 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/qm 2025-09-01T23:34:48,646 copying build/lib/pyemc/emc/examples/setup/chemistry/qm/setup.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/qm 2025-09-01T23:34:48,649 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/surface 2025-09-01T23:34:48,650 copying build/lib/pyemc/emc/examples/setup/chemistry/surface/lmp2pdb.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/surface 2025-09-01T23:34:48,652 copying build/lib/pyemc/emc/examples/setup/chemistry/surface/surface.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/surface 2025-09-01T23:34:48,654 copying build/lib/pyemc/emc/examples/setup/chemistry/surface/lammps.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/surface 2025-09-01T23:34:48,656 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/record 2025-09-01T23:34:48,657 copying build/lib/pyemc/emc/examples/setup/chemistry/record/fullerene.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/record 2025-09-01T23:34:48,659 copying build/lib/pyemc/emc/examples/setup/chemistry/record/cat.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/record 2025-09-01T23:34:48,661 copying build/lib/pyemc/emc/examples/setup/chemistry/record/exec.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/record 2025-09-01T23:34:48,663 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/gromacs 2025-09-01T23:34:48,664 copying build/lib/pyemc/emc/examples/setup/chemistry/gromacs/setup.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/gromacs 2025-09-01T23:34:48,667 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field 2025-09-01T23:34:48,668 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:48,669 copying build/lib/pyemc/emc/examples/setup/chemistry/field/generate/field.in -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:48,671 copying build/lib/pyemc/emc/examples/setup/chemistry/field/generate/field.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:48,674 copying build/lib/pyemc/emc/examples/setup/chemistry/field/generate/build.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:48,675 copying build/lib/pyemc/emc/examples/setup/chemistry/field/generate/field.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/generate 2025-09-01T23:34:48,678 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/charmm 2025-09-01T23:34:48,679 copying build/lib/pyemc/emc/examples/setup/chemistry/field/charmm/chemistry.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/charmm 2025-09-01T23:34:48,681 copying build/lib/pyemc/emc/examples/setup/chemistry/field/charmm/solution.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/charmm 2025-09-01T23:34:48,683 copying build/lib/pyemc/emc/examples/setup/chemistry/field/charmm/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/charmm 2025-09-01T23:34:48,685 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/dpd 2025-09-01T23:34:48,686 copying build/lib/pyemc/emc/examples/setup/chemistry/field/dpd/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/dpd 2025-09-01T23:34:48,688 copying build/lib/pyemc/emc/examples/setup/chemistry/field/dpd/name.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/dpd 2025-09-01T23:34:48,690 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/pcff 2025-09-01T23:34:48,692 copying build/lib/pyemc/emc/examples/setup/chemistry/field/pcff/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/pcff 2025-09-01T23:34:48,694 copying build/lib/pyemc/emc/examples/setup/chemistry/field/pcff/name.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/pcff 2025-09-01T23:34:48,696 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/trappe 2025-09-01T23:34:48,697 copying build/lib/pyemc/emc/examples/setup/chemistry/field/trappe/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/trappe 2025-09-01T23:34:48,699 copying build/lib/pyemc/emc/examples/setup/chemistry/field/trappe/name.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/trappe 2025-09-01T23:34:48,701 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:48,702 copying build/lib/pyemc/emc/examples/setup/chemistry/field/user/polymer.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:48,704 copying build/lib/pyemc/emc/examples/setup/chemistry/field/user/polymer.in -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:48,706 copying build/lib/pyemc/emc/examples/setup/chemistry/field/user/polymer.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:48,708 copying build/lib/pyemc/emc/examples/setup/chemistry/field/user/polymer.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:48,710 copying build/lib/pyemc/emc/examples/setup/chemistry/field/user/build.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/user 2025-09-01T23:34:48,713 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/lj 2025-09-01T23:34:48,714 copying build/lib/pyemc/emc/examples/setup/chemistry/field/lj/field.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/lj 2025-09-01T23:34:48,716 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/opls 2025-09-01T23:34:48,718 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/opls/ua 2025-09-01T23:34:48,719 copying build/lib/pyemc/emc/examples/setup/chemistry/field/opls/ua/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/opls/ua 2025-09-01T23:34:48,721 copying build/lib/pyemc/emc/examples/setup/chemistry/field/opls/ua/name.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/opls/ua 2025-09-01T23:34:48,723 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/opls/water 2025-09-01T23:34:48,724 copying build/lib/pyemc/emc/examples/setup/chemistry/field/opls/water/water.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/opls/water 2025-09-01T23:34:48,727 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/chemistry/field/opls/aa 2025-09-01T23:34:48,728 copying build/lib/pyemc/emc/examples/setup/chemistry/field/opls/aa/setup.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/opls/aa 2025-09-01T23:34:48,730 copying build/lib/pyemc/emc/examples/setup/chemistry/field/opls/aa/name.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/chemistry/field/opls/aa 2025-09-01T23:34:48,732 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment 2025-09-01T23:34:48,734 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/green-kubo 2025-09-01T23:34:48,735 copying build/lib/pyemc/emc/examples/setup/environment/green-kubo/viscosity.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/green-kubo 2025-09-01T23:34:48,738 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/t_glass 2025-09-01T23:34:48,739 copying build/lib/pyemc/emc/examples/setup/environment/t_glass/README -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/t_glass 2025-09-01T23:34:48,741 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:48,742 copying build/lib/pyemc/emc/examples/setup/environment/t_glass/setup/2023072610.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:48,744 copying build/lib/pyemc/emc/examples/setup/environment/t_glass/setup/2023072601.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:48,746 copying build/lib/pyemc/emc/examples/setup/environment/t_glass/setup/2023072611.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:48,748 copying build/lib/pyemc/emc/examples/setup/environment/t_glass/setup/2023072600.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/t_glass/setup 2025-09-01T23:34:48,751 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/nemd 2025-09-01T23:34:48,752 copying build/lib/pyemc/emc/examples/setup/environment/nemd/shear.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/nemd 2025-09-01T23:34:48,755 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/field 2025-09-01T23:34:48,756 copying build/lib/pyemc/emc/examples/setup/environment/field/README -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/field 2025-09-01T23:34:48,759 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/field/chemistry 2025-09-01T23:34:48,761 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/field/chemistry/stages 2025-09-01T23:34:48,762 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/field/chemistry/stages/lj 2025-09-01T23:34:48,763 copying build/lib/pyemc/emc/examples/setup/environment/field/chemistry/stages/lj/stage.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/field/chemistry/stages/lj 2025-09-01T23:34:48,766 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/field/chemistry/scripts 2025-09-01T23:34:48,767 copying build/lib/pyemc/emc/examples/setup/environment/field/chemistry/scripts/lj.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/field/chemistry/scripts 2025-09-01T23:34:48,770 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/field/chemistry/field 2025-09-01T23:34:48,771 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/field/chemistry/field/stage 2025-09-01T23:34:48,772 copying build/lib/pyemc/emc/examples/setup/environment/field/chemistry/field/stage/lj.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/field/chemistry/field/stage 2025-09-01T23:34:48,775 creating build/bdist.linux-armv7l/wheel/pyemc/emc/examples/setup/environment/field/setup 2025-09-01T23:34:48,776 copying build/lib/pyemc/emc/examples/setup/environment/field/setup/lj.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/field/setup 2025-09-01T23:34:48,778 copying build/lib/pyemc/emc/examples/setup/environment/field/setup/2018070100.esh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/examples/setup/environment/field/setup 2025-09-01T23:34:48,780 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field 2025-09-01T23:34:48,782 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/martini 2025-09-01T23:34:48,783 copying build/lib/pyemc/emc/field/martini/.DS_Store -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini 2025-09-01T23:34:48,786 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,787 copying build/lib/pyemc/emc/field/martini/v2.0/sugars.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,790 copying build/lib/pyemc/emc/field/martini/v2.0/cholesterol.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,792 copying build/lib/pyemc/emc/field/martini/v2.0/lipids.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,795 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,796 copying build/lib/pyemc/emc/field/martini/v2.0/src/surfactants.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,799 copying build/lib/pyemc/emc/field/martini/v2.0/src/lipids.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,802 copying build/lib/pyemc/emc/field/martini/v2.0/src/cholesterol.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,804 copying build/lib/pyemc/emc/field/martini/v2.0/src/polymers.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,809 copying build/lib/pyemc/emc/field/martini/v2.0/src/aminoacids.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,811 copying build/lib/pyemc/emc/field/martini/v2.0/src/other.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,814 copying build/lib/pyemc/emc/field/martini/v2.0/src/solvents.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,816 copying build/lib/pyemc/emc/field/martini/v2.0/src/sugars.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,818 copying build/lib/pyemc/emc/field/martini/v2.0/src/martini.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,822 copying build/lib/pyemc/emc/field/martini/v2.0/src/other.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,824 copying build/lib/pyemc/emc/field/martini/v2.0/src/xemium.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,826 copying build/lib/pyemc/emc/field/martini/v2.0/src/ions.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0/src 2025-09-01T23:34:48,828 copying build/lib/pyemc/emc/field/martini/v2.0/polymers.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,831 copying build/lib/pyemc/emc/field/martini/v2.0/surfactants.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,833 copying build/lib/pyemc/emc/field/martini/v2.0/xemium.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,834 copying build/lib/pyemc/emc/field/martini/v2.0/martini.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,838 copying build/lib/pyemc/emc/field/martini/v2.0/file.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,840 copying build/lib/pyemc/emc/field/martini/v2.0/convert.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,842 copying build/lib/pyemc/emc/field/martini/v2.0/other.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,844 copying build/lib/pyemc/emc/field/martini/v2.0/convert.out -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,847 copying build/lib/pyemc/emc/field/martini/v2.0/solvents.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,849 copying build/lib/pyemc/emc/field/martini/v2.0/aminoacids.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,852 copying build/lib/pyemc/emc/field/martini/v2.0/ions.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v2.0 2025-09-01T23:34:48,854 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/martini/v3.0 2025-09-01T23:34:48,855 copying build/lib/pyemc/emc/field/martini/v3.0/martini.prm.gz -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0 2025-09-01T23:34:48,899 copying build/lib/pyemc/emc/field/martini/v3.0/sugars.prm.gz -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0 2025-09-01T23:34:48,902 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:48,903 copying build/lib/pyemc/emc/field/martini/v3.0/src/phospholipids.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:48,909 copying build/lib/pyemc/emc/field/martini/v3.0/src/sugars_v2.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:48,911 copying build/lib/pyemc/emc/field/martini/v3.0/src/solvents.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:48,913 copying build/lib/pyemc/emc/field/martini/v3.0/src/small_molecules.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:48,915 copying build/lib/pyemc/emc/field/martini/v3.0/src/sugars.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:48,917 copying build/lib/pyemc/emc/field/martini/v3.0/src/martini.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:49,393 copying build/lib/pyemc/emc/field/martini/v3.0/src/nucleobases.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:49,396 copying build/lib/pyemc/emc/field/martini/v3.0/src/small_molecules_v2.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:49,400 copying build/lib/pyemc/emc/field/martini/v3.0/src/ions.itp -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0/src 2025-09-01T23:34:49,402 copying build/lib/pyemc/emc/field/martini/v3.0/convert.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0 2025-09-01T23:34:49,404 copying build/lib/pyemc/emc/field/martini/v3.0/convert.out -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/martini/v3.0 2025-09-01T23:34:49,407 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/gauss 2025-09-01T23:34:49,408 copying build/lib/pyemc/emc/field/gauss/general.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/gauss 2025-09-01T23:34:49,410 copying build/lib/pyemc/emc/field/.DS_Store -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field 2025-09-01T23:34:49,413 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/charmm 2025-09-01T23:34:49,415 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,416 copying build/lib/pyemc/emc/field/charmm/c36a/prot.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,420 copying build/lib/pyemc/emc/field/charmm/c36a/na.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,423 copying build/lib/pyemc/emc/field/charmm/c36a/prot.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,425 copying build/lib/pyemc/emc/field/charmm/c36a/ethers.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,427 copying build/lib/pyemc/emc/field/charmm/c36a/carb.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,431 copying build/lib/pyemc/emc/field/charmm/c36a/lipid.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,433 copying build/lib/pyemc/emc/field/charmm/c36a/lipid.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,436 copying build/lib/pyemc/emc/field/charmm/c36a/ethers.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,438 copying build/lib/pyemc/emc/field/charmm/c36a/carb.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,442 copying build/lib/pyemc/emc/field/charmm/c36a/cgenff.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,449 copying build/lib/pyemc/emc/field/charmm/c36a/water_ions.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,451 copying build/lib/pyemc/emc/field/charmm/c36a/water_ions.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,453 copying build/lib/pyemc/emc/field/charmm/c36a/na.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,456 copying build/lib/pyemc/emc/field/charmm/c36a/cgenff.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/c36a 2025-09-01T23:34:49,460 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/charmm/iff 2025-09-01T23:34:49,461 copying build/lib/pyemc/emc/field/charmm/iff/caso4.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/iff 2025-09-01T23:34:49,463 copying build/lib/pyemc/emc/field/charmm/iff/al2o3_nb.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/iff 2025-09-01T23:34:49,464 copying build/lib/pyemc/emc/field/charmm/iff/convert.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/iff 2025-09-01T23:34:49,466 copying build/lib/pyemc/emc/field/charmm/iff/clay.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/iff 2025-09-01T23:34:49,468 copying build/lib/pyemc/emc/field/charmm/iff/clay.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/iff 2025-09-01T23:34:49,470 copying build/lib/pyemc/emc/field/charmm/iff/al2o3_nb.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/iff 2025-09-01T23:34:49,471 copying build/lib/pyemc/emc/field/charmm/iff/caso4.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/charmm/iff 2025-09-01T23:34:49,474 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/pcff_ore 2025-09-01T23:34:49,474 copying build/lib/pyemc/emc/field/pcff_ore/pcff_ore.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/pcff_ore 2025-09-01T23:34:49,490 copying build/lib/pyemc/emc/field/pcff_ore/pcff_ore_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/pcff_ore 2025-09-01T23:34:49,494 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/dpd 2025-09-01T23:34:49,495 copying build/lib/pyemc/emc/field/dpd/general.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/dpd 2025-09-01T23:34:49,497 copying build/lib/pyemc/emc/field/dpd/srp.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/dpd 2025-09-01T23:34:49,500 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/polystyrene 2025-09-01T23:34:49,501 copying build/lib/pyemc/emc/field/polystyrene/smoothed_m-r.m -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/polystyrene 2025-09-01T23:34:49,503 copying build/lib/pyemc/emc/field/polystyrene/README -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/polystyrene 2025-09-01T23:34:49,505 copying build/lib/pyemc/emc/field/polystyrene/smoothed_e-e.m -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/polystyrene 2025-09-01T23:34:49,508 copying build/lib/pyemc/emc/field/polystyrene/smoothed_r-e.m -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/polystyrene 2025-09-01T23:34:49,510 copying build/lib/pyemc/emc/field/polystyrene/smoothed_r-r.m -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/polystyrene 2025-09-01T23:34:49,512 copying build/lib/pyemc/emc/field/polystyrene/smoothed_m-e.m -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/polystyrene 2025-09-01T23:34:49,515 copying build/lib/pyemc/emc/field/polystyrene/smoothed_m-m.m -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/polystyrene 2025-09-01T23:34:49,518 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/uff 2025-09-01T23:34:49,519 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/uff/src 2025-09-01T23:34:49,521 copying build/lib/pyemc/emc/field/uff/src/README -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/uff/src 2025-09-01T23:34:49,523 copying build/lib/pyemc/emc/field/uff/src/uff.ff -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/uff/src 2025-09-01T23:34:49,526 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/pcff 2025-09-01T23:34:49,527 copying build/lib/pyemc/emc/field/pcff/pcff_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/pcff 2025-09-01T23:34:49,530 copying build/lib/pyemc/emc/field/pcff/pcff.rlb -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/pcff 2025-09-01T23:34:49,532 copying build/lib/pyemc/emc/field/pcff/pcff.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/pcff 2025-09-01T23:34:49,541 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/trappe 2025-09-01T23:34:49,543 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,544 copying build/lib/pyemc/emc/field/trappe/2014/list.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,546 copying build/lib/pyemc/emc/field/trappe/2014/e2k.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,547 copying build/lib/pyemc/emc/field/trappe/2014/trappe-ua.field -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,553 copying build/lib/pyemc/emc/field/trappe/2014/trappe-ua.define.old -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,555 copying build/lib/pyemc/emc/field/trappe/2014/trappe-ua.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,557 copying build/lib/pyemc/emc/field/trappe/2014/trappe-eh.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,560 copying build/lib/pyemc/emc/field/trappe/2014/torsions.txt -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,562 copying build/lib/pyemc/emc/field/trappe/2014/convert.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,563 copying build/lib/pyemc/emc/field/trappe/2014/convert.emc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,565 copying build/lib/pyemc/emc/field/trappe/2014/trappe-ua.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,567 copying build/lib/pyemc/emc/field/trappe/2014/trappe-ua.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,570 copying build/lib/pyemc/emc/field/trappe/2014/torsions.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/trappe/2014 2025-09-01T23:34:49,572 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/sdk 2025-09-01T23:34:49,573 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/sdk/v1.0 2025-09-01T23:34:49,575 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:49,576 copying build/lib/pyemc/emc/field/sdk/v1.0/src/convert.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:49,578 copying build/lib/pyemc/emc/field/sdk/v1.0/src/mass.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:49,580 copying build/lib/pyemc/emc/field/sdk/v1.0/src/pair.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:49,582 copying build/lib/pyemc/emc/field/sdk/v1.0/src/bond.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:49,584 copying build/lib/pyemc/emc/field/sdk/v1.0/src/angle.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:49,586 copying build/lib/pyemc/emc/field/sdk/v1.0/src/sdk.xlsx -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:49,589 copying build/lib/pyemc/emc/field/sdk/v1.0/src/torsion.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0/src 2025-09-01T23:34:49,591 copying build/lib/pyemc/emc/field/sdk/v1.0/sdk.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0 2025-09-01T23:34:49,593 copying build/lib/pyemc/emc/field/sdk/v1.0/convert.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0 2025-09-01T23:34:49,595 copying build/lib/pyemc/emc/field/sdk/v1.0/sdk.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/sdk/v1.0 2025-09-01T23:34:49,598 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/cff 2025-09-01T23:34:49,599 copying build/lib/pyemc/emc/field/cff/sio2_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,601 copying build/lib/pyemc/emc/field/cff/caso4.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,603 copying build/lib/pyemc/emc/field/cff/c3a.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,605 copying build/lib/pyemc/emc/field/cff/zno_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,607 copying build/lib/pyemc/emc/field/cff/sio2.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,610 copying build/lib/pyemc/emc/field/cff/al2o3_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,612 copying build/lib/pyemc/emc/field/cff/template.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,614 copying build/lib/pyemc/emc/field/cff/template_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,616 copying build/lib/pyemc/emc/field/cff/caso4_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,617 copying build/lib/pyemc/emc/field/cff/c3s.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,620 copying build/lib/pyemc/emc/field/cff/zno.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,622 copying build/lib/pyemc/emc/field/cff/c3a_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,623 copying build/lib/pyemc/emc/field/cff/al2o3.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,626 copying build/lib/pyemc/emc/field/cff/c3s_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/cff 2025-09-01T23:34:49,628 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/born 2025-09-01T23:34:49,630 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/born/2016 2025-09-01T23:34:49,631 copying build/lib/pyemc/emc/field/born/2016/guillot.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/born/2016 2025-09-01T23:34:49,632 copying build/lib/pyemc/emc/field/born/2016/matsui.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/born/2016 2025-09-01T23:34:49,634 copying build/lib/pyemc/emc/field/born/2016/matsui.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/born/2016 2025-09-01T23:34:49,636 copying build/lib/pyemc/emc/field/born/2016/convert.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/born/2016 2025-09-01T23:34:49,637 copying build/lib/pyemc/emc/field/born/2016/guillot.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/born/2016 2025-09-01T23:34:49,639 copying build/lib/pyemc/emc/field/born/2016/guillot.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/born/2016 2025-09-01T23:34:49,641 copying build/lib/pyemc/emc/field/born/2016/matsui.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/born/2016 2025-09-01T23:34:49,643 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/opls 2025-09-01T23:34:49,645 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/opls/2024 2025-09-01T23:34:49,646 copying build/lib/pyemc/emc/field/opls/2024/opls-aa.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024 2025-09-01T23:34:49,650 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/opls/2024/src 2025-09-01T23:34:49,651 copying build/lib/pyemc/emc/field/opls/2024/src/opls-ua.xref -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024/src 2025-09-01T23:34:49,653 copying build/lib/pyemc/emc/field/opls/2024/src/reoplsff.zip -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024/src 2025-09-01T23:34:49,656 copying build/lib/pyemc/emc/field/opls/2024/src/oplsaa.sb -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024/src 2025-09-01T23:34:49,659 copying build/lib/pyemc/emc/field/opls/2024/src/opls-aa.xref -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024/src 2025-09-01T23:34:49,664 copying build/lib/pyemc/emc/field/opls/2024/src/oplsaa.par -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024/src 2025-09-01T23:34:49,670 copying build/lib/pyemc/emc/field/opls/2024/opls-aa.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024 2025-09-01T23:34:49,674 copying build/lib/pyemc/emc/field/opls/2024/opls-ua.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024 2025-09-01T23:34:49,676 copying build/lib/pyemc/emc/field/opls/2024/opls-ua.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024 2025-09-01T23:34:49,678 copying build/lib/pyemc/emc/field/opls/2024/opls-ua.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024 2025-09-01T23:34:49,681 copying build/lib/pyemc/emc/field/opls/2024/opls-aa.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2024 2025-09-01T23:34:49,684 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/opls/2012 2025-09-01T23:34:49,685 copying build/lib/pyemc/emc/field/opls/2012/opls-aa.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012 2025-09-01T23:34:49,688 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/opls/2012/src 2025-09-01T23:34:49,689 copying build/lib/pyemc/emc/field/opls/2012/src/trim.pl -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012/src 2025-09-01T23:34:49,691 copying build/lib/pyemc/emc/field/opls/2012/src/reoplsff.zip -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012/src 2025-09-01T23:34:49,695 copying build/lib/pyemc/emc/field/opls/2012/src/oplsaa.sb -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012/src 2025-09-01T23:34:49,698 copying build/lib/pyemc/emc/field/opls/2012/src/add.txt -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012/src 2025-09-01T23:34:49,700 copying build/lib/pyemc/emc/field/opls/2012/src/oplsaa.par -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012/src 2025-09-01T23:34:49,706 copying build/lib/pyemc/emc/field/opls/2012/opls-aa.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012 2025-09-01T23:34:49,709 copying build/lib/pyemc/emc/field/opls/2012/convert.sh -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012 2025-09-01T23:34:49,711 copying build/lib/pyemc/emc/field/opls/2012/opls-ua.define -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012 2025-09-01T23:34:49,713 copying build/lib/pyemc/emc/field/opls/2012/opls-ua.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012 2025-09-01T23:34:49,715 copying build/lib/pyemc/emc/field/opls/2012/opls-aa.debug -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012 2025-09-01T23:34:49,718 copying build/lib/pyemc/emc/field/opls/2012/opls-ua.prm -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012 2025-09-01T23:34:49,721 copying build/lib/pyemc/emc/field/opls/2012/opls-aa.top -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/opls/2012 2025-09-01T23:34:49,724 creating build/bdist.linux-armv7l/wheel/pyemc/emc/field/compass 2025-09-01T23:34:49,725 copying build/lib/pyemc/emc/field/compass/compass.frc -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/compass 2025-09-01T23:34:49,728 copying build/lib/pyemc/emc/field/compass/compass_templates.dat -> build/bdist.linux-armv7l/wheel/./pyemc/emc/field/compass 2025-09-01T23:34:49,731 copying build/lib/pyemc/__init__.py -> build/bdist.linux-armv7l/wheel/./pyemc 2025-09-01T23:34:49,733 copying build/lib/pyemc/runner.py -> build/bdist.linux-armv7l/wheel/./pyemc 2025-09-01T23:34:49,734 running install_egg_info 2025-09-01T23:34:49,767 running egg_info 2025-09-01T23:34:49,795 writing emc_pypi.egg-info/PKG-INFO 2025-09-01T23:34:49,798 writing dependency_links to emc_pypi.egg-info/dependency_links.txt 2025-09-01T23:34:49,800 writing top-level names to emc_pypi.egg-info/top_level.txt 2025-09-01T23:34:49,911 reading manifest file 'emc_pypi.egg-info/SOURCES.txt' 2025-09-01T23:34:49,932 adding license file 'LICENSE' 2025-09-01T23:34:49,950 writing manifest file 'emc_pypi.egg-info/SOURCES.txt' 2025-09-01T23:34:49,952 Copying emc_pypi.egg-info to build/bdist.linux-armv7l/wheel/./emc_pypi-2025.8.21-py3.11.egg-info 2025-09-01T23:34:49,962 running install_scripts 2025-09-01T23:34:49,974 creating build/bdist.linux-armv7l/wheel/emc_pypi-2025.8.21.dist-info/WHEEL 2025-09-01T23:34:49,976 creating '/tmp/pip-wheel-3tcw5bdc/emc_pypi-2025.8.21-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-01T23:34:49,984 adding 'emc_pypi-2025.8.21.dist-info/licenses/LICENSE' 2025-09-01T23:34:49,986 adding 'pyemc/__init__.py' 2025-09-01T23:34:49,987 adding 'pyemc/runner.py' 2025-09-01T23:34:49,996 adding 'pyemc/emc/HISTORY' 2025-09-01T23:34:50,002 adding 'pyemc/emc/LICENSE' 2025-09-01T23:34:50,004 adding 'pyemc/emc/README' 2025-09-01T23:34:51,149 adding 'pyemc/emc/bin/emc_linux_aarch64' 2025-09-01T23:34:52,748 adding 'pyemc/emc/bin/emc_linux_x86_64' 2025-09-01T23:34:54,611 adding 'pyemc/emc/bin/emc_macos' 2025-09-01T23:34:55,839 adding 'pyemc/emc/bin/emc_win32.exe' 2025-09-01T23:34:55,883 adding 'pyemc/emc/check/all.txt' 2025-09-01T23:34:55,885 adding 'pyemc/emc/check/check.pl' 2025-09-01T23:34:55,886 adding 'pyemc/emc/check/checked.txt' 2025-09-01T23:34:55,891 adding 'pyemc/emc/check/notes.txt' 2025-09-01T23:34:55,893 adding 'pyemc/emc/check/void_funcion_n.txt' 2025-09-01T23:34:55,998 adding 'pyemc/emc/docs/emc.pdf' 2025-09-01T23:34:56,006 adding 'pyemc/emc/examples/setup/chemistry/bulk/setup.esh' 2025-09-01T23:34:56,008 adding 'pyemc/emc/examples/setup/chemistry/field/charmm/chemistry.esh' 2025-09-01T23:34:56,009 adding 'pyemc/emc/examples/setup/chemistry/field/charmm/setup.sh' 2025-09-01T23:34:56,011 adding 'pyemc/emc/examples/setup/chemistry/field/charmm/solution.esh' 2025-09-01T23:34:56,012 adding 'pyemc/emc/examples/setup/chemistry/field/dpd/name.esh' 2025-09-01T23:34:56,014 adding 'pyemc/emc/examples/setup/chemistry/field/dpd/setup.sh' 2025-09-01T23:34:56,016 adding 'pyemc/emc/examples/setup/chemistry/field/generate/build.emc' 2025-09-01T23:34:56,017 adding 'pyemc/emc/examples/setup/chemistry/field/generate/field.esh' 2025-09-01T23:34:56,018 adding 'pyemc/emc/examples/setup/chemistry/field/generate/field.in' 2025-09-01T23:34:56,020 adding 'pyemc/emc/examples/setup/chemistry/field/generate/field.prm' 2025-09-01T23:34:56,021 adding 'pyemc/emc/examples/setup/chemistry/field/lj/field.esh' 2025-09-01T23:34:56,024 adding 'pyemc/emc/examples/setup/chemistry/field/opls/aa/name.esh' 2025-09-01T23:34:56,025 adding 'pyemc/emc/examples/setup/chemistry/field/opls/aa/setup.sh' 2025-09-01T23:34:56,027 adding 'pyemc/emc/examples/setup/chemistry/field/opls/ua/name.esh' 2025-09-01T23:34:56,028 adding 'pyemc/emc/examples/setup/chemistry/field/opls/ua/setup.sh' 2025-09-01T23:34:56,030 adding 'pyemc/emc/examples/setup/chemistry/field/opls/water/water.esh' 2025-09-01T23:34:56,032 adding 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