2025-09-02T05:41:53,066 Created temporary directory: /tmp/pip-build-tracker-91jzi_vq 2025-09-02T05:41:53,067 Initialized build tracking at /tmp/pip-build-tracker-91jzi_vq 2025-09-02T05:41:53,067 Created build tracker: /tmp/pip-build-tracker-91jzi_vq 2025-09-02T05:41:53,068 Entered build tracker: /tmp/pip-build-tracker-91jzi_vq 2025-09-02T05:41:53,069 Created temporary directory: /tmp/pip-wheel-d5ou9u_a 2025-09-02T05:41:53,073 Created temporary directory: /tmp/pip-ephem-wheel-cache-f82g7oi_ 2025-09-02T05:41:53,119 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-02T05:41:53,121 2 location(s) to search for versions of nmdc-runtime: 2025-09-02T05:41:53,121 * https://pypi.org/simple/nmdc-runtime/ 2025-09-02T05:41:53,121 * https://www.piwheels.org/simple/nmdc-runtime/ 2025-09-02T05:41:53,122 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2025-09-02T05:41:53,123 Getting page https://pypi.org/simple/nmdc-runtime/ 2025-09-02T05:41:53,124 Found index url https://pypi.org/simple/ 2025-09-02T05:41:53,346 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2025-09-02T05:41:53,356 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2025-09-02T05:41:53,357 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2025-09-02T05:41:53,357 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) 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https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.13-py3-none-any.whl#sha256=31d876ee80407dc4049b210ed8c017b77723f7ad78bf89ea9ef8b07f1ea8682a (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,597 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.12-py3-none-any.whl#sha256=87d81eb829ad73563e0fa371336f03d59417e00c9dcc12d943738fa67c0287fc (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,597 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.11-py3-none-any.whl#sha256=b48456c6ad565bcca33642f19ca745d5e57105419ae1dc96efb9f51b349e7fbd (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,598 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.10-py3-none-any.whl#sha256=9575befdcc66f9de5c0c08719aa4e5986f3b8d6ec2ad11a8a8f0595ceb4b17bf (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,598 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.9-py3-none-any.whl#sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,599 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,599 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,600 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,600 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,601 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2025-09-02T05:41:53,602 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2025-09-02T05:41:53,602 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2025-09-02T05:41:53,603 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2025-09-02T05:41:53,603 Skipping link: No binaries permitted for nmdc-runtime: https://archive1.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2025-09-02T05:41:53,604 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2025-09-02T05:41:53,605 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2025-09-02T05:41:53,626 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2025-09-02T05:41:53,628 Collecting nmdc-runtime==2.10.0 2025-09-02T05:41:53,630 Created temporary directory: /tmp/pip-unpack-ouzi5ryl 2025-09-02T05:41:53,858 Downloading nmdc_runtime-2.10.0.tar.gz (5.2 MB) 2025-09-02T05:41:56,352 Added nmdc-runtime==2.10.0 from https://files.pythonhosted.org/packages/6b/92/732825c6822d2922e552699f026909341d9e9cad790a07278a7bfeb97c83/nmdc_runtime-2.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-91jzi_vq' 2025-09-02T05:41:56,354 Running setup.py (path:/tmp/pip-wheel-d5ou9u_a/nmdc-runtime_f4e47f00226349d785d267d1ccd22176/setup.py) egg_info for package nmdc-runtime 2025-09-02T05:41:56,355 Created temporary directory: /tmp/pip-pip-egg-info-n0vgp058 2025-09-02T05:41:56,355 Preparing metadata (setup.py): started 2025-09-02T05:41:56,356 Running command python setup.py egg_info 2025-09-02T05:41:56,901 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-02T05:41:56,901 !! 2025-09-02T05:41:56,903 ******************************************************************************** 2025-09-02T05:41:56,903 Requirements should be satisfied by a PEP 517 installer. 2025-09-02T05:41:56,904 If you are using pip, you can try `pip install --use-pep517`. 2025-09-02T05:41:56,905 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-02T05:41:56,906 or your builds will no longer be supported. 2025-09-02T05:41:56,906 ******************************************************************************** 2025-09-02T05:41:56,908 !! 2025-09-02T05:41:56,908 dist.fetch_build_eggs(dist.setup_requires) 2025-09-02T05:41:59,858 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-02T05:41:59,859 !! 2025-09-02T05:41:59,860 ******************************************************************************** 2025-09-02T05:41:59,861 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-02T05:41:59,862 License :: OSI Approved :: Apache Software License 2025-09-02T05:41:59,863 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-02T05:41:59,863 ******************************************************************************** 2025-09-02T05:41:59,864 !! 2025-09-02T05:41:59,865 self._finalize_license_expression() 2025-09-02T05:41:59,890 running egg_info 2025-09-02T05:41:59,920 creating /tmp/pip-pip-egg-info-n0vgp058/nmdc_runtime.egg-info 2025-09-02T05:41:59,921 writing /tmp/pip-pip-egg-info-n0vgp058/nmdc_runtime.egg-info/PKG-INFO 2025-09-02T05:41:59,924 writing dependency_links to /tmp/pip-pip-egg-info-n0vgp058/nmdc_runtime.egg-info/dependency_links.txt 2025-09-02T05:41:59,926 writing entry points to /tmp/pip-pip-egg-info-n0vgp058/nmdc_runtime.egg-info/entry_points.txt 2025-09-02T05:41:59,927 writing top-level names to /tmp/pip-pip-egg-info-n0vgp058/nmdc_runtime.egg-info/top_level.txt 2025-09-02T05:41:59,929 writing manifest file '/tmp/pip-pip-egg-info-n0vgp058/nmdc_runtime.egg-info/SOURCES.txt' 2025-09-02T05:42:00,146 listing git files failed - pretending there aren't any 2025-09-02T05:42:00,161 reading manifest file '/tmp/pip-pip-egg-info-n0vgp058/nmdc_runtime.egg-info/SOURCES.txt' 2025-09-02T05:42:00,162 adding license file 'LICENSE' 2025-09-02T05:42:00,169 writing manifest file '/tmp/pip-pip-egg-info-n0vgp058/nmdc_runtime.egg-info/SOURCES.txt' 2025-09-02T05:42:00,280 Preparing metadata (setup.py): finished with status 'done' 2025-09-02T05:42:00,284 Source in /tmp/pip-wheel-d5ou9u_a/nmdc-runtime_f4e47f00226349d785d267d1ccd22176 has version 2.10.0, which satisfies requirement nmdc-runtime==2.10.0 from https://files.pythonhosted.org/packages/6b/92/732825c6822d2922e552699f026909341d9e9cad790a07278a7bfeb97c83/nmdc_runtime-2.10.0.tar.gz 2025-09-02T05:42:00,285 Removed nmdc-runtime==2.10.0 from https://files.pythonhosted.org/packages/6b/92/732825c6822d2922e552699f026909341d9e9cad790a07278a7bfeb97c83/nmdc_runtime-2.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-91jzi_vq' 2025-09-02T05:42:00,291 Created temporary directory: /tmp/pip-unpack-wb_27kdu 2025-09-02T05:42:00,292 Created temporary directory: /tmp/pip-unpack-qy0m4bxe 2025-09-02T05:42:00,292 Building wheels for collected packages: nmdc-runtime 2025-09-02T05:42:00,296 Created temporary directory: /tmp/pip-wheel-epcvzz9x 2025-09-02T05:42:00,297 DEPRECATION: Building 'nmdc-runtime' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'nmdc-runtime'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-02T05:42:00,298 Building wheel for nmdc-runtime (setup.py): started 2025-09-02T05:42:00,299 Destination directory: /tmp/pip-wheel-epcvzz9x 2025-09-02T05:42:00,300 Running command python setup.py bdist_wheel 2025-09-02T05:42:00,832 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-02T05:42:00,832 !! 2025-09-02T05:42:00,833 ******************************************************************************** 2025-09-02T05:42:00,834 Requirements should be satisfied by a PEP 517 installer. 2025-09-02T05:42:00,835 If you are using pip, you can try `pip install --use-pep517`. 2025-09-02T05:42:00,836 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-02T05:42:00,836 or your builds will no longer be supported. 2025-09-02T05:42:00,837 ******************************************************************************** 2025-09-02T05:42:00,838 !! 2025-09-02T05:42:00,839 dist.fetch_build_eggs(dist.setup_requires) 2025-09-02T05:42:01,453 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-02T05:42:01,453 !! 2025-09-02T05:42:01,454 ******************************************************************************** 2025-09-02T05:42:01,455 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-02T05:42:01,456 License :: OSI Approved :: Apache Software License 2025-09-02T05:42:01,457 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-02T05:42:01,458 ******************************************************************************** 2025-09-02T05:42:01,459 !! 2025-09-02T05:42:01,459 self._finalize_license_expression() 2025-09-02T05:42:01,460 running bdist_wheel 2025-09-02T05:42:01,601 running build 2025-09-02T05:42:01,602 running build_py 2025-09-02T05:42:01,634 creating build/lib/nmdc_runtime 2025-09-02T05:42:01,636 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2025-09-02T05:42:01,638 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2025-09-02T05:42:01,641 copying nmdc_runtime/mongo_util.py -> build/lib/nmdc_runtime 2025-09-02T05:42:01,643 copying nmdc_runtime/config.py -> build/lib/nmdc_runtime 2025-09-02T05:42:01,645 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2025-09-02T05:42:01,647 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2025-09-02T05:42:01,649 creating build/lib/nmdc_runtime/site 2025-09-02T05:42:01,650 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2025-09-02T05:42:01,653 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2025-09-02T05:42:01,654 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2025-09-02T05:42:01,657 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2025-09-02T05:42:01,659 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2025-09-02T05:42:01,663 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2025-09-02T05:42:01,666 creating build/lib/nmdc_runtime/client 2025-09-02T05:42:01,667 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2025-09-02T05:42:01,669 creating build/lib/nmdc_runtime/minter 2025-09-02T05:42:01,670 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2025-09-02T05:42:01,672 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2025-09-02T05:42:01,673 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2025-09-02T05:42:01,676 creating build/lib/nmdc_runtime/lib 2025-09-02T05:42:01,677 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2025-09-02T05:42:01,679 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2025-09-02T05:42:01,682 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2025-09-02T05:42:01,684 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2025-09-02T05:42:01,687 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2025-09-02T05:42:01,689 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2025-09-02T05:42:01,692 creating build/lib/nmdc_runtime/infrastructure 2025-09-02T05:42:01,693 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2025-09-02T05:42:01,695 creating build/lib/nmdc_runtime/domain 2025-09-02T05:42:01,696 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2025-09-02T05:42:01,698 creating build/lib/nmdc_runtime/core 2025-09-02T05:42:01,699 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2025-09-02T05:42:01,701 creating build/lib/nmdc_runtime/api 2025-09-02T05:42:01,702 copying nmdc_runtime/api/__init__.py -> build/lib/nmdc_runtime/api 2025-09-02T05:42:01,704 copying nmdc_runtime/api/analytics.py -> build/lib/nmdc_runtime/api 2025-09-02T05:42:01,706 copying nmdc_runtime/api/openapi.py -> build/lib/nmdc_runtime/api 2025-09-02T05:42:01,708 copying nmdc_runtime/api/middleware.py -> build/lib/nmdc_runtime/api 2025-09-02T05:42:01,710 copying nmdc_runtime/api/main.py -> build/lib/nmdc_runtime/api 2025-09-02T05:42:01,713 creating build/lib/nmdc_runtime/site/backup 2025-09-02T05:42:01,714 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2025-09-02T05:42:01,716 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2025-09-02T05:42:01,717 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2025-09-02T05:42:01,719 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2025-09-02T05:42:01,722 creating build/lib/nmdc_runtime/site/translation 2025-09-02T05:42:01,723 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2025-09-02T05:42:01,725 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2025-09-02T05:42:01,726 copying nmdc_runtime/site/translation/neon_soil_translator.py -> build/lib/nmdc_runtime/site/translation 2025-09-02T05:42:01,729 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2025-09-02T05:42:01,732 copying nmdc_runtime/site/translation/neon_utils.py -> build/lib/nmdc_runtime/site/translation 2025-09-02T05:42:01,735 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2025-09-02T05:42:01,737 copying nmdc_runtime/site/translation/neon_benthic_translator.py -> build/lib/nmdc_runtime/site/translation 2025-09-02T05:42:01,740 copying nmdc_runtime/site/translation/neon_surface_water_translator.py -> build/lib/nmdc_runtime/site/translation 2025-09-02T05:42:01,744 creating build/lib/nmdc_runtime/site/drsobjects 2025-09-02T05:42:01,745 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2025-09-02T05:42:01,747 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2025-09-02T05:42:01,748 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2025-09-02T05:42:01,751 creating build/lib/nmdc_runtime/site/normalization 2025-09-02T05:42:01,752 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2025-09-02T05:42:01,753 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2025-09-02T05:42:01,756 creating build/lib/nmdc_runtime/site/changesheets 2025-09-02T05:42:01,757 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2025-09-02T05:42:01,758 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2025-09-02T05:42:01,761 creating build/lib/nmdc_runtime/site/validation 2025-09-02T05:42:01,762 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2025-09-02T05:42:01,764 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2025-09-02T05:42:01,766 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2025-09-02T05:42:01,768 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2025-09-02T05:42:01,770 creating build/lib/nmdc_runtime/site/repair 2025-09-02T05:42:01,771 copying nmdc_runtime/site/repair/__init__.py -> build/lib/nmdc_runtime/site/repair 2025-09-02T05:42:01,773 copying nmdc_runtime/site/repair/database_updater.py -> build/lib/nmdc_runtime/site/repair 2025-09-02T05:42:01,776 creating build/lib/nmdc_runtime/site/export 2025-09-02T05:42:01,777 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2025-09-02T05:42:01,778 copying nmdc_runtime/site/export/ncbi_xml.py -> build/lib/nmdc_runtime/site/export 2025-09-02T05:42:01,781 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2025-09-02T05:42:01,783 copying nmdc_runtime/site/export/ncbi_xml_utils.py -> build/lib/nmdc_runtime/site/export 2025-09-02T05:42:01,786 creating build/lib/nmdc_runtime/minter/entrypoints 2025-09-02T05:42:01,787 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2025-09-02T05:42:01,789 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2025-09-02T05:42:01,791 creating build/lib/nmdc_runtime/minter/domain 2025-09-02T05:42:01,792 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2025-09-02T05:42:01,794 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2025-09-02T05:42:01,796 creating build/lib/nmdc_runtime/minter/adapters 2025-09-02T05:42:01,797 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2025-09-02T05:42:01,799 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2025-09-02T05:42:01,802 creating build/lib/nmdc_runtime/infrastructure/database 2025-09-02T05:42:01,803 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2025-09-02T05:42:01,805 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2025-09-02T05:42:01,807 creating build/lib/nmdc_runtime/infrastructure/database/models 2025-09-02T05:42:01,808 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2025-09-02T05:42:01,809 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2025-09-02T05:42:01,812 creating build/lib/nmdc_runtime/domain/users 2025-09-02T05:42:01,813 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2025-09-02T05:42:01,814 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2025-09-02T05:42:01,816 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2025-09-02T05:42:01,818 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2025-09-02T05:42:01,820 creating build/lib/nmdc_runtime/core/db 2025-09-02T05:42:01,821 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2025-09-02T05:42:01,823 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2025-09-02T05:42:01,825 creating build/lib/nmdc_runtime/core/exceptions 2025-09-02T05:42:01,826 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2025-09-02T05:42:01,828 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2025-09-02T05:42:01,830 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2025-09-02T05:42:01,832 creating build/lib/nmdc_runtime/api/db 2025-09-02T05:42:01,833 copying nmdc_runtime/api/db/__init__.py -> build/lib/nmdc_runtime/api/db 2025-09-02T05:42:01,834 copying nmdc_runtime/api/db/mongo.py -> build/lib/nmdc_runtime/api/db 2025-09-02T05:42:01,837 copying nmdc_runtime/api/db/s3.py -> build/lib/nmdc_runtime/api/db 2025-09-02T05:42:01,840 creating build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,841 copying nmdc_runtime/api/models/run.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,844 copying nmdc_runtime/api/models/object_type.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,846 copying nmdc_runtime/api/models/operation.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,848 copying nmdc_runtime/api/models/__init__.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,849 copying nmdc_runtime/api/models/workflow.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,851 copying nmdc_runtime/api/models/util.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,853 copying nmdc_runtime/api/models/query_continuation.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,856 copying nmdc_runtime/api/models/job.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,857 copying nmdc_runtime/api/models/trigger.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,859 copying nmdc_runtime/api/models/capability.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,861 copying nmdc_runtime/api/models/object.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,863 copying nmdc_runtime/api/models/minter.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,865 copying nmdc_runtime/api/models/nmdc_schema.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,867 copying nmdc_runtime/api/models/query.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,869 copying nmdc_runtime/api/models/site.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,871 copying nmdc_runtime/api/models/id.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,873 copying nmdc_runtime/api/models/metadata.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,875 copying nmdc_runtime/api/models/user.py -> build/lib/nmdc_runtime/api/models 2025-09-02T05:42:01,878 creating build/lib/nmdc_runtime/api/core 2025-09-02T05:42:01,879 copying nmdc_runtime/api/core/__init__.py -> build/lib/nmdc_runtime/api/core 2025-09-02T05:42:01,880 copying nmdc_runtime/api/core/auth.py -> build/lib/nmdc_runtime/api/core 2025-09-02T05:42:01,882 copying nmdc_runtime/api/core/util.py -> build/lib/nmdc_runtime/api/core 2025-09-02T05:42:01,884 copying nmdc_runtime/api/core/idgen.py -> build/lib/nmdc_runtime/api/core 2025-09-02T05:42:01,886 copying nmdc_runtime/api/core/metadata.py -> build/lib/nmdc_runtime/api/core 2025-09-02T05:42:01,889 creating build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,890 copying nmdc_runtime/api/endpoints/workflows.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,893 copying nmdc_runtime/api/endpoints/object_types.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,895 copying nmdc_runtime/api/endpoints/ids.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,898 copying nmdc_runtime/api/endpoints/__init__.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,899 copying nmdc_runtime/api/endpoints/find.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,902 copying nmdc_runtime/api/endpoints/runs.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,904 copying nmdc_runtime/api/endpoints/nmdcschema.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,907 copying nmdc_runtime/api/endpoints/util.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,910 copying nmdc_runtime/api/endpoints/jobs.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,913 copying nmdc_runtime/api/endpoints/users.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,915 copying nmdc_runtime/api/endpoints/operations.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,917 copying nmdc_runtime/api/endpoints/search.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,919 copying nmdc_runtime/api/endpoints/queries.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,922 copying nmdc_runtime/api/endpoints/sites.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,924 copying nmdc_runtime/api/endpoints/objects.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,926 copying nmdc_runtime/api/endpoints/triggers.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,928 copying nmdc_runtime/api/endpoints/metadata.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,930 copying nmdc_runtime/api/endpoints/capabilities.py -> build/lib/nmdc_runtime/api/endpoints 2025-09-02T05:42:01,933 creating build/lib/nmdc_runtime/api/boot 2025-09-02T05:42:01,934 copying nmdc_runtime/api/boot/workflows.py -> build/lib/nmdc_runtime/api/boot 2025-09-02T05:42:01,936 copying nmdc_runtime/api/boot/object_types.py -> build/lib/nmdc_runtime/api/boot 2025-09-02T05:42:01,938 copying nmdc_runtime/api/boot/__init__.py -> build/lib/nmdc_runtime/api/boot 2025-09-02T05:42:01,940 copying nmdc_runtime/api/boot/triggers.py -> build/lib/nmdc_runtime/api/boot 2025-09-02T05:42:01,942 copying nmdc_runtime/api/boot/capabilities.py -> build/lib/nmdc_runtime/api/boot 2025-09-02T05:42:01,944 creating build/lib/nmdc_runtime/api/models/lib 2025-09-02T05:42:01,945 copying nmdc_runtime/api/models/lib/__init__.py -> build/lib/nmdc_runtime/api/models/lib 2025-09-02T05:42:01,947 copying nmdc_runtime/api/models/lib/helpers.py -> build/lib/nmdc_runtime/api/models/lib 2025-09-02T05:42:01,949 creating build/lib/nmdc_runtime/api/endpoints/lib 2025-09-02T05:42:01,950 copying nmdc_runtime/api/endpoints/lib/__init__.py -> build/lib/nmdc_runtime/api/endpoints/lib 2025-09-02T05:42:01,952 copying nmdc_runtime/api/endpoints/lib/helpers.py -> build/lib/nmdc_runtime/api/endpoints/lib 2025-09-02T05:42:01,954 copying nmdc_runtime/api/endpoints/lib/path_segments.py -> build/lib/nmdc_runtime/api/endpoints/lib 2025-09-02T05:42:02,012 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-02T05:42:02,012 !! 2025-09-02T05:42:02,013 ******************************************************************************** 2025-09-02T05:42:02,014 Please avoid running ``setup.py`` directly. 2025-09-02T05:42:02,014 Instead, use pypa/build, pypa/installer or other 2025-09-02T05:42:02,015 standards-based tools. 2025-09-02T05:42:02,016 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-02T05:42:02,016 or your builds will no longer be supported. 2025-09-02T05:42:02,017 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-02T05:42:02,018 ******************************************************************************** 2025-09-02T05:42:02,019 !! 2025-09-02T05:42:02,019 self.initialize_options() 2025-09-02T05:42:02,041 installing to build/bdist.linux-armv7l/wheel 2025-09-02T05:42:02,042 running install 2025-09-02T05:42:02,065 running install_lib 2025-09-02T05:42:02,094 creating build/bdist.linux-armv7l/wheel 2025-09-02T05:42:02,096 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2025-09-02T05:42:02,098 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2025-09-02T05:42:02,099 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-09-02T05:42:02,102 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2025-09-02T05:42:02,103 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-09-02T05:42:02,105 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-09-02T05:42:02,107 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-09-02T05:42:02,109 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/backup 2025-09-02T05:42:02,111 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-09-02T05:42:02,112 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-09-02T05:42:02,115 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-09-02T05:42:02,117 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2025-09-02T05:42:02,118 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-09-02T05:42:02,121 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-09-02T05:42:02,122 copying build/lib/nmdc_runtime/site/translation/neon_soil_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-09-02T05:42:02,125 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-09-02T05:42:02,128 copying build/lib/nmdc_runtime/site/translation/neon_utils.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-09-02T05:42:02,130 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-09-02T05:42:02,133 copying build/lib/nmdc_runtime/site/translation/neon_benthic_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-09-02T05:42:02,136 copying build/lib/nmdc_runtime/site/translation/neon_surface_water_translator.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/translation 2025-09-02T05:42:02,139 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2025-09-02T05:42:02,140 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/drsobjects 2025-09-02T05:42:02,142 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/drsobjects 2025-09-02T05:42:02,143 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/drsobjects 2025-09-02T05:42:02,146 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2025-09-02T05:42:02,147 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/normalization 2025-09-02T05:42:02,148 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/normalization 2025-09-02T05:42:02,150 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2025-09-02T05:42:02,151 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/changesheets 2025-09-02T05:42:02,153 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/changesheets 2025-09-02T05:42:02,155 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2025-09-02T05:42:02,156 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-09-02T05:42:02,158 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-09-02T05:42:02,159 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-09-02T05:42:02,161 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/validation 2025-09-02T05:42:02,164 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/repair 2025-09-02T05:42:02,165 copying build/lib/nmdc_runtime/site/repair/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/repair 2025-09-02T05:42:02,166 copying build/lib/nmdc_runtime/site/repair/database_updater.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/repair 2025-09-02T05:42:02,169 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-09-02T05:42:02,172 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site 2025-09-02T05:42:02,176 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2025-09-02T05:42:02,177 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-09-02T05:42:02,179 copying build/lib/nmdc_runtime/site/export/ncbi_xml.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-09-02T05:42:02,182 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-09-02T05:42:02,184 copying build/lib/nmdc_runtime/site/export/ncbi_xml_utils.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/site/export 2025-09-02T05:42:02,188 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2025-09-02T05:42:02,189 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/client 2025-09-02T05:42:02,191 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-09-02T05:42:02,194 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2025-09-02T05:42:02,195 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter 2025-09-02T05:42:02,197 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter 2025-09-02T05:42:02,200 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2025-09-02T05:42:02,201 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/entrypoints 2025-09-02T05:42:02,203 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/entrypoints 2025-09-02T05:42:02,206 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2025-09-02T05:42:02,207 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/domain 2025-09-02T05:42:02,209 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/domain 2025-09-02T05:42:02,212 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter 2025-09-02T05:42:02,214 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2025-09-02T05:42:02,216 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/adapters 2025-09-02T05:42:02,218 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/minter/adapters 2025-09-02T05:42:02,220 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-09-02T05:42:02,224 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2025-09-02T05:42:02,225 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-09-02T05:42:02,227 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-09-02T05:42:02,230 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-09-02T05:42:02,233 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-09-02T05:42:02,236 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-09-02T05:42:02,238 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/lib 2025-09-02T05:42:02,242 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2025-09-02T05:42:02,243 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure 2025-09-02T05:42:02,245 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2025-09-02T05:42:02,247 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database 2025-09-02T05:42:02,249 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2025-09-02T05:42:02,251 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database/models 2025-09-02T05:42:02,253 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database/models 2025-09-02T05:42:02,255 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/infrastructure/database 2025-09-02T05:42:02,258 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2025-09-02T05:42:02,259 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain 2025-09-02T05:42:02,262 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2025-09-02T05:42:02,263 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-09-02T05:42:02,265 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-09-02T05:42:02,267 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-09-02T05:42:02,269 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/domain/users 2025-09-02T05:42:02,272 copying build/lib/nmdc_runtime/mongo_util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-09-02T05:42:02,274 copying build/lib/nmdc_runtime/config.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-09-02T05:42:02,277 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2025-09-02T05:42:02,278 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core 2025-09-02T05:42:02,281 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2025-09-02T05:42:02,282 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/db 2025-09-02T05:42:02,284 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/db 2025-09-02T05:42:02,286 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2025-09-02T05:42:02,288 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/exceptions 2025-09-02T05:42:02,290 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/exceptions 2025-09-02T05:42:02,292 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/core/exceptions 2025-09-02T05:42:02,294 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-09-02T05:42:02,296 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api 2025-09-02T05:42:02,297 copying build/lib/nmdc_runtime/api/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api 2025-09-02T05:42:02,300 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db 2025-09-02T05:42:02,301 copying build/lib/nmdc_runtime/api/db/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/db 2025-09-02T05:42:02,303 copying build/lib/nmdc_runtime/api/db/mongo.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/db 2025-09-02T05:42:02,306 copying build/lib/nmdc_runtime/api/db/s3.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/db 2025-09-02T05:42:02,308 copying build/lib/nmdc_runtime/api/analytics.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api 2025-09-02T05:42:02,311 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models 2025-09-02T05:42:02,312 copying build/lib/nmdc_runtime/api/models/run.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,315 copying build/lib/nmdc_runtime/api/models/object_type.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,317 copying build/lib/nmdc_runtime/api/models/operation.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,319 copying build/lib/nmdc_runtime/api/models/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,321 copying build/lib/nmdc_runtime/api/models/workflow.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,323 copying build/lib/nmdc_runtime/api/models/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,326 copying build/lib/nmdc_runtime/api/models/query_continuation.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,328 copying build/lib/nmdc_runtime/api/models/job.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,330 copying build/lib/nmdc_runtime/api/models/trigger.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,333 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models/lib 2025-09-02T05:42:02,334 copying build/lib/nmdc_runtime/api/models/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models/lib 2025-09-02T05:42:02,336 copying build/lib/nmdc_runtime/api/models/lib/helpers.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models/lib 2025-09-02T05:42:02,339 copying build/lib/nmdc_runtime/api/models/capability.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,341 copying build/lib/nmdc_runtime/api/models/object.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,343 copying build/lib/nmdc_runtime/api/models/minter.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,345 copying build/lib/nmdc_runtime/api/models/nmdc_schema.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,348 copying build/lib/nmdc_runtime/api/models/query.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,350 copying build/lib/nmdc_runtime/api/models/site.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,352 copying build/lib/nmdc_runtime/api/models/id.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,355 copying build/lib/nmdc_runtime/api/models/metadata.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,357 copying build/lib/nmdc_runtime/api/models/user.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/models 2025-09-02T05:42:02,359 copying build/lib/nmdc_runtime/api/openapi.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api 2025-09-02T05:42:02,362 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core 2025-09-02T05:42:02,364 copying build/lib/nmdc_runtime/api/core/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/core 2025-09-02T05:42:02,366 copying build/lib/nmdc_runtime/api/core/auth.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/core 2025-09-02T05:42:02,368 copying build/lib/nmdc_runtime/api/core/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/core 2025-09-02T05:42:02,370 copying build/lib/nmdc_runtime/api/core/idgen.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/core 2025-09-02T05:42:02,373 copying build/lib/nmdc_runtime/api/core/metadata.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/core 2025-09-02T05:42:02,376 copying build/lib/nmdc_runtime/api/middleware.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api 2025-09-02T05:42:02,379 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints 2025-09-02T05:42:02,380 copying build/lib/nmdc_runtime/api/endpoints/workflows.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,383 copying build/lib/nmdc_runtime/api/endpoints/object_types.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,385 copying build/lib/nmdc_runtime/api/endpoints/ids.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,388 copying build/lib/nmdc_runtime/api/endpoints/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,390 copying build/lib/nmdc_runtime/api/endpoints/find.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,393 copying build/lib/nmdc_runtime/api/endpoints/runs.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,395 copying build/lib/nmdc_runtime/api/endpoints/nmdcschema.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,399 copying build/lib/nmdc_runtime/api/endpoints/util.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,402 copying build/lib/nmdc_runtime/api/endpoints/jobs.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,404 copying build/lib/nmdc_runtime/api/endpoints/users.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,408 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints/lib 2025-09-02T05:42:02,409 copying build/lib/nmdc_runtime/api/endpoints/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints/lib 2025-09-02T05:42:02,411 copying build/lib/nmdc_runtime/api/endpoints/lib/helpers.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints/lib 2025-09-02T05:42:02,414 copying build/lib/nmdc_runtime/api/endpoints/lib/path_segments.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints/lib 2025-09-02T05:42:02,417 copying build/lib/nmdc_runtime/api/endpoints/operations.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,419 copying build/lib/nmdc_runtime/api/endpoints/search.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,421 copying build/lib/nmdc_runtime/api/endpoints/queries.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,424 copying build/lib/nmdc_runtime/api/endpoints/sites.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,427 copying build/lib/nmdc_runtime/api/endpoints/objects.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,429 copying build/lib/nmdc_runtime/api/endpoints/triggers.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,432 copying build/lib/nmdc_runtime/api/endpoints/metadata.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,434 copying build/lib/nmdc_runtime/api/endpoints/capabilities.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/endpoints 2025-09-02T05:42:02,437 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot 2025-09-02T05:42:02,438 copying build/lib/nmdc_runtime/api/boot/workflows.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/boot 2025-09-02T05:42:02,440 copying build/lib/nmdc_runtime/api/boot/object_types.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/boot 2025-09-02T05:42:02,443 copying build/lib/nmdc_runtime/api/boot/__init__.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/boot 2025-09-02T05:42:02,445 copying build/lib/nmdc_runtime/api/boot/triggers.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/boot 2025-09-02T05:42:02,447 copying build/lib/nmdc_runtime/api/boot/capabilities.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api/boot 2025-09-02T05:42:02,449 copying build/lib/nmdc_runtime/api/main.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime/api 2025-09-02T05:42:02,452 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/./nmdc_runtime 2025-09-02T05:42:02,453 running install_egg_info 2025-09-02T05:42:02,484 running egg_info 2025-09-02T05:42:02,513 writing nmdc_runtime.egg-info/PKG-INFO 2025-09-02T05:42:02,517 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2025-09-02T05:42:02,519 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2025-09-02T05:42:02,521 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2025-09-02T05:42:02,645 listing git files failed - pretending there aren't any 2025-09-02T05:42:02,650 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2025-09-02T05:42:02,928 adding license file 'LICENSE' 2025-09-02T05:42:02,943 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2025-09-02T05:42:02,945 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/./nmdc_runtime-2.10.0-py3.11.egg-info 2025-09-02T05:42:02,956 running install_scripts 2025-09-02T05:42:02,969 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-2.10.0.dist-info/WHEEL 2025-09-02T05:42:02,971 creating '/tmp/pip-wheel-epcvzz9x/nmdc_runtime-2.10.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-02T05:42:02,973 adding 'nmdc_runtime/__init__.py' 2025-09-02T05:42:02,975 adding 'nmdc_runtime/config.py' 2025-09-02T05:42:02,976 adding 'nmdc_runtime/containers.py' 2025-09-02T05:42:02,978 adding 'nmdc_runtime/main.py' 2025-09-02T05:42:02,979 adding 'nmdc_runtime/mongo_util.py' 2025-09-02T05:42:02,982 adding 'nmdc_runtime/util.py' 2025-09-02T05:42:02,984 adding 'nmdc_runtime/api/__init__.py' 2025-09-02T05:42:02,985 adding 'nmdc_runtime/api/analytics.py' 2025-09-02T05:42:02,987 adding 'nmdc_runtime/api/main.py' 2025-09-02T05:42:02,989 adding 'nmdc_runtime/api/middleware.py' 2025-09-02T05:42:02,991 adding 'nmdc_runtime/api/openapi.py' 2025-09-02T05:42:02,992 adding 'nmdc_runtime/api/boot/__init__.py' 2025-09-02T05:42:02,993 adding 'nmdc_runtime/api/boot/capabilities.py' 2025-09-02T05:42:02,994 adding 'nmdc_runtime/api/boot/object_types.py' 2025-09-02T05:42:02,996 adding 'nmdc_runtime/api/boot/triggers.py' 2025-09-02T05:42:02,997 adding 'nmdc_runtime/api/boot/workflows.py' 2025-09-02T05:42:02,998 adding 'nmdc_runtime/api/core/__init__.py' 2025-09-02T05:42:03,000 adding 'nmdc_runtime/api/core/auth.py' 2025-09-02T05:42:03,001 adding 'nmdc_runtime/api/core/idgen.py' 2025-09-02T05:42:03,005 adding 'nmdc_runtime/api/core/metadata.py' 2025-09-02T05:42:03,007 adding 'nmdc_runtime/api/core/util.py' 2025-09-02T05:42:03,008 adding 'nmdc_runtime/api/db/__init__.py' 2025-09-02T05:42:03,011 adding 'nmdc_runtime/api/db/mongo.py' 2025-09-02T05:42:03,012 adding 'nmdc_runtime/api/db/s3.py' 2025-09-02T05:42:03,014 adding 'nmdc_runtime/api/endpoints/__init__.py' 2025-09-02T05:42:03,015 adding 'nmdc_runtime/api/endpoints/capabilities.py' 2025-09-02T05:42:03,019 adding 'nmdc_runtime/api/endpoints/find.py' 2025-09-02T05:42:03,021 adding 'nmdc_runtime/api/endpoints/ids.py' 2025-09-02T05:42:03,023 adding 'nmdc_runtime/api/endpoints/jobs.py' 2025-09-02T05:42:03,024 adding 'nmdc_runtime/api/endpoints/metadata.py' 2025-09-02T05:42:03,027 adding 'nmdc_runtime/api/endpoints/nmdcschema.py' 2025-09-02T05:42:03,028 adding 'nmdc_runtime/api/endpoints/object_types.py' 2025-09-02T05:42:03,030 adding 'nmdc_runtime/api/endpoints/objects.py' 2025-09-02T05:42:03,032 adding 'nmdc_runtime/api/endpoints/operations.py' 2025-09-02T05:42:03,035 adding 'nmdc_runtime/api/endpoints/queries.py' 2025-09-02T05:42:03,036 adding 'nmdc_runtime/api/endpoints/runs.py' 2025-09-02T05:42:03,038 adding 'nmdc_runtime/api/endpoints/search.py' 2025-09-02T05:42:03,039 adding 'nmdc_runtime/api/endpoints/sites.py' 2025-09-02T05:42:03,040 adding 'nmdc_runtime/api/endpoints/triggers.py' 2025-09-02T05:42:03,042 adding 'nmdc_runtime/api/endpoints/users.py' 2025-09-02T05:42:03,045 adding 'nmdc_runtime/api/endpoints/util.py' 2025-09-02T05:42:03,048 adding 'nmdc_runtime/api/endpoints/workflows.py' 2025-09-02T05:42:03,049 adding 'nmdc_runtime/api/endpoints/lib/__init__.py' 2025-09-02T05:42:03,052 adding 'nmdc_runtime/api/endpoints/lib/helpers.py' 2025-09-02T05:42:03,053 adding 'nmdc_runtime/api/endpoints/lib/path_segments.py' 2025-09-02T05:42:03,055 adding 'nmdc_runtime/api/models/__init__.py' 2025-09-02T05:42:03,056 adding 'nmdc_runtime/api/models/capability.py' 2025-09-02T05:42:03,058 adding 'nmdc_runtime/api/models/id.py' 2025-09-02T05:42:03,059 adding 'nmdc_runtime/api/models/job.py' 2025-09-02T05:42:03,060 adding 'nmdc_runtime/api/models/metadata.py' 2025-09-02T05:42:03,061 adding 'nmdc_runtime/api/models/minter.py' 2025-09-02T05:42:03,063 adding 'nmdc_runtime/api/models/nmdc_schema.py' 2025-09-02T05:42:03,064 adding 'nmdc_runtime/api/models/object.py' 2025-09-02T05:42:03,066 adding 'nmdc_runtime/api/models/object_type.py' 2025-09-02T05:42:03,067 adding 'nmdc_runtime/api/models/operation.py' 2025-09-02T05:42:03,068 adding 'nmdc_runtime/api/models/query.py' 2025-09-02T05:42:03,070 adding 'nmdc_runtime/api/models/query_continuation.py' 2025-09-02T05:42:03,071 adding 'nmdc_runtime/api/models/run.py' 2025-09-02T05:42:03,073 adding 'nmdc_runtime/api/models/site.py' 2025-09-02T05:42:03,074 adding 'nmdc_runtime/api/models/trigger.py' 2025-09-02T05:42:03,075 adding 'nmdc_runtime/api/models/user.py' 2025-09-02T05:42:03,077 adding 'nmdc_runtime/api/models/util.py' 2025-09-02T05:42:03,078 adding 'nmdc_runtime/api/models/workflow.py' 2025-09-02T05:42:03,080 adding 'nmdc_runtime/api/models/lib/__init__.py' 2025-09-02T05:42:03,081 adding 'nmdc_runtime/api/models/lib/helpers.py' 2025-09-02T05:42:03,083 adding 'nmdc_runtime/client/__init__.py' 2025-09-02T05:42:03,085 adding 'nmdc_runtime/core/__init__.py' 2025-09-02T05:42:03,086 adding 'nmdc_runtime/core/db/Database.py' 2025-09-02T05:42:03,087 adding 'nmdc_runtime/core/db/__init__.py' 2025-09-02T05:42:03,089 adding 'nmdc_runtime/core/exceptions/__init__.py' 2025-09-02T05:42:03,090 adding 'nmdc_runtime/core/exceptions/base.py' 2025-09-02T05:42:03,091 adding 'nmdc_runtime/core/exceptions/token.py' 2025-09-02T05:42:03,092 adding 'nmdc_runtime/domain/__init__.py' 2025-09-02T05:42:03,094 adding 'nmdc_runtime/domain/users/__init__.py' 2025-09-02T05:42:03,095 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2025-09-02T05:42:03,096 adding 'nmdc_runtime/domain/users/userSchema.py' 2025-09-02T05:42:03,097 adding 'nmdc_runtime/domain/users/userService.py' 2025-09-02T05:42:03,099 adding 'nmdc_runtime/infrastructure/__init__.py' 2025-09-02T05:42:03,100 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2025-09-02T05:42:03,101 adding 'nmdc_runtime/infrastructure/database/db.py' 2025-09-02T05:42:03,103 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2025-09-02T05:42:03,104 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2025-09-02T05:42:03,105 adding 'nmdc_runtime/lib/__init__.py' 2025-09-02T05:42:03,106 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2025-09-02T05:42:03,108 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2025-09-02T05:42:03,111 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2025-09-02T05:42:03,113 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2025-09-02T05:42:03,118 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2025-09-02T05:42:03,120 adding 'nmdc_runtime/minter/__init__.py' 2025-09-02T05:42:03,121 adding 'nmdc_runtime/minter/bootstrap.py' 2025-09-02T05:42:03,122 adding 'nmdc_runtime/minter/config.py' 2025-09-02T05:42:03,123 adding 'nmdc_runtime/minter/adapters/__init__.py' 2025-09-02T05:42:03,125 adding 'nmdc_runtime/minter/adapters/repository.py' 2025-09-02T05:42:03,127 adding 'nmdc_runtime/minter/domain/__init__.py' 2025-09-02T05:42:03,128 adding 'nmdc_runtime/minter/domain/model.py' 2025-09-02T05:42:03,131 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2025-09-02T05:42:03,132 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2025-09-02T05:42:03,134 adding 'nmdc_runtime/site/__init__.py' 2025-09-02T05:42:03,136 adding 'nmdc_runtime/site/graphs.py' 2025-09-02T05:42:03,143 adding 'nmdc_runtime/site/ops.py' 2025-09-02T05:42:03,146 adding 'nmdc_runtime/site/repository.py' 2025-09-02T05:42:03,149 adding 'nmdc_runtime/site/resources.py' 2025-09-02T05:42:03,150 adding 'nmdc_runtime/site/util.py' 2025-09-02T05:42:03,152 adding 'nmdc_runtime/site/backup/__init__.py' 2025-09-02T05:42:03,153 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2025-09-02T05:42:03,154 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2025-09-02T05:42:03,156 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2025-09-02T05:42:03,157 adding 'nmdc_runtime/site/changesheets/__init__.py' 2025-09-02T05:42:03,159 adding 'nmdc_runtime/site/changesheets/base.py' 2025-09-02T05:42:03,161 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2025-09-02T05:42:03,162 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2025-09-02T05:42:03,163 adding 'nmdc_runtime/site/drsobjects/registration.py' 2025-09-02T05:42:03,165 adding 'nmdc_runtime/site/export/__init__.py' 2025-09-02T05:42:03,168 adding 'nmdc_runtime/site/export/ncbi_xml.py' 2025-09-02T05:42:03,170 adding 'nmdc_runtime/site/export/ncbi_xml_utils.py' 2025-09-02T05:42:03,171 adding 'nmdc_runtime/site/export/study_metadata.py' 2025-09-02T05:42:03,173 adding 'nmdc_runtime/site/normalization/__init__.py' 2025-09-02T05:42:03,174 adding 'nmdc_runtime/site/normalization/gold.py' 2025-09-02T05:42:03,177 adding 'nmdc_runtime/site/repair/__init__.py' 2025-09-02T05:42:03,179 adding 'nmdc_runtime/site/repair/database_updater.py' 2025-09-02T05:42:03,181 adding 'nmdc_runtime/site/translation/__init__.py' 2025-09-02T05:42:03,185 adding 'nmdc_runtime/site/translation/gold_translator.py' 2025-09-02T05:42:03,188 adding 'nmdc_runtime/site/translation/neon_benthic_translator.py' 2025-09-02T05:42:03,191 adding 'nmdc_runtime/site/translation/neon_soil_translator.py' 2025-09-02T05:42:03,195 adding 'nmdc_runtime/site/translation/neon_surface_water_translator.py' 2025-09-02T05:42:03,196 adding 'nmdc_runtime/site/translation/neon_utils.py' 2025-09-02T05:42:03,201 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2025-09-02T05:42:03,203 adding 'nmdc_runtime/site/translation/translator.py' 2025-09-02T05:42:03,204 adding 'nmdc_runtime/site/validation/__init__.py' 2025-09-02T05:42:03,205 adding 'nmdc_runtime/site/validation/emsl.py' 2025-09-02T05:42:03,206 adding 'nmdc_runtime/site/validation/gold.py' 2025-09-02T05:42:03,207 adding 'nmdc_runtime/site/validation/util.py' 2025-09-02T05:42:03,210 adding 'nmdc_runtime-2.10.0.dist-info/licenses/LICENSE' 2025-09-02T05:42:03,212 adding 'nmdc_runtime-2.10.0.dist-info/METADATA' 2025-09-02T05:42:03,213 adding 'nmdc_runtime-2.10.0.dist-info/WHEEL' 2025-09-02T05:42:03,214 adding 'nmdc_runtime-2.10.0.dist-info/entry_points.txt' 2025-09-02T05:42:03,215 adding 'nmdc_runtime-2.10.0.dist-info/top_level.txt' 2025-09-02T05:42:03,217 adding 'nmdc_runtime-2.10.0.dist-info/RECORD' 2025-09-02T05:42:03,223 removing build/bdist.linux-armv7l/wheel 2025-09-02T05:42:03,378 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2025-09-02T05:42:03,383 Created wheel for nmdc-runtime: filename=nmdc_runtime-2.10.0-py3-none-any.whl size=258968 sha256=8cbe7522497220e9fc4a4b5eea9f0490e54640f809978984cdcb350c34268821 2025-09-02T05:42:03,384 Stored in directory: /tmp/pip-ephem-wheel-cache-f82g7oi_/wheels/7e/c0/2f/e40b03d5994ee2207f13179157ca1dcf28d827b50a46677a3a 2025-09-02T05:42:03,400 Successfully built nmdc-runtime 2025-09-02T05:42:03,410 Removed build tracker: '/tmp/pip-build-tracker-91jzi_vq'