2025-09-04T18:44:59,114 Created temporary directory: /tmp/pip-build-tracker-nyivcbn0 2025-09-04T18:44:59,115 Initialized build tracking at /tmp/pip-build-tracker-nyivcbn0 2025-09-04T18:44:59,115 Created build tracker: /tmp/pip-build-tracker-nyivcbn0 2025-09-04T18:44:59,115 Entered build tracker: /tmp/pip-build-tracker-nyivcbn0 2025-09-04T18:44:59,115 Created temporary directory: /tmp/pip-wheel-xts4y4z_ 2025-09-04T18:44:59,118 Created temporary directory: /tmp/pip-ephem-wheel-cache-1iy4uzgc 2025-09-04T18:44:59,179 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-04T18:44:59,181 2 location(s) to search for versions of cmf: 2025-09-04T18:44:59,181 * https://pypi.org/simple/cmf/ 2025-09-04T18:44:59,181 * https://www.piwheels.org/simple/cmf/ 2025-09-04T18:44:59,181 Fetching project page and analyzing links: https://pypi.org/simple/cmf/ 2025-09-04T18:44:59,182 Getting page https://pypi.org/simple/cmf/ 2025-09-04T18:44:59,183 Found index url https://pypi.org/simple/ 2025-09-04T18:44:59,256 Fetched page https://pypi.org/simple/cmf/ as application/vnd.pypi.simple.v1+json 2025-09-04T18:44:59,276 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/6d/47/901e3587896047250f7a6d1fc090d3e31f1017db711fab05182b10a0496d/cmf-0.1502.dev2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,276 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/a8/3e/1dd007e6c0b2ba94e10d337bc2fbf73bce45910464ce84cc7c5d8952e4f4/cmf-1.0.1-cp27-none-win32.whl (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,277 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/2d/27/1172a212ad588dbb63a13caf75ce2aee33d23107c3e4b5d76e4362151b29/cmf-1.0.1-cp27-none-win_amd64.whl (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,277 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/eb/71/6fb961662aa606926b492e47731de9561eedc41c66781cd76851e71e1562/cmf-1.0.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,277 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/d1/0c/34dd179866ca34c7e4bfb6ed11a7b6f8fb348850284859945b854d1abf31/cmf-1.0.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,277 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/97/9f/f5c3d1a596d24a5140c827097313c0cb0e337e6bd3fa1cf947f5e343ba5f/cmf-1.0.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,277 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/dd/133aed74de5e67c344f275825a1af799c339f648ecd3fa05251aa871d7e6/cmf-1.0.1-py2.7-win-amd64.egg (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,277 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a8/0a/3bbbd66c3be9ec3186a285bb6e3450c028d751879f945b1de7a86c40cc3f/cmf-1.0.1-py2.7-win32.egg (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,278 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/60/ebfaaa2bd7a2ef05ccf3f33884aad12a7e199e94ff627b2e78bb67ce20ce/cmf-1.0.1-py3.5-win-amd64.egg (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,278 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/87/24/452d6e10c4a53410a7e6cfcf6c450c8d83bab8c9225840b34b7b461133dd/cmf-1.0.1-py3.5-win32.egg (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,278 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/95/6c/6e16be69edcab99e26058c669bbd36747aaf2e543d2b5b8ac7217737bc76/cmf-1.0.1-py3.6-win-amd64.egg (from https://pypi.org/simple/cmf/) 2025-09-04T18:44:59,278 Found link 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2025-09-04T18:44:59,279 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/d5/1d/2bfba74e1e3f08d2742269c4bbfa706bc975a9cee3b629311d2ce63f3a62/cmf-1.0.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,279 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/32/af/95c867f9950e0f867f48a45e12ec6ddf55936060b12da3700e1f4f547dfc/cmf-1.0.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,280 Found link https://files.pythonhosted.org/packages/d4/bd/16fcd30fa2da66542dfbd22750bd6421784df590bf69dee7dec54bf786e8/cmf-1.0.2.tar.gz (from https://pypi.org/simple/cmf/) (requires-python:>=2.7), version: 1.0.2 2025-09-04T18:44:59,280 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/b2/17/affbeb3cdd5db1ccf079b4a09444050866d7f41aa8ef44a555640f3aa3e4/cmf-1.0.3-cp27-none-win32.whl (from 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Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/d7/d6/f5e08a8c205c8f4032e0336e064b8d6c4268fcfaddc47f6ff36972f25353/cmf-1.0.4-cp27-none-win32.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,283 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/7b/96/b89205a75c536f5b1ea6286ef85ac8c9da9eb888be3b687e9a7963364ca8/cmf-1.0.4-cp27-none-win_amd64.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,283 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/94/4a/9530dfb039755a163b3e943fc31b14e5f5f78576581ffffe0220c61ae359/cmf-1.0.4-cp35-cp35m-win32.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,283 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/60/1d/3f4f139ba59826a6e3b5d4ee6dce813e50c324a1a879983c6bbab312a107/cmf-1.0.4-cp35-cp35m-win_amd64.whl (from 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(requires-python:>=2.7) 2025-09-04T18:44:59,284 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/10/07/c906fdca300183374a6a0f26e69737a65cf34695f0d766b9e4d7065f531d/cmf-1.0.5-cp36-cp36m-win32.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,284 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/ae/c9/948f0008c458d3c4effd4227414b2741a63afccd105921f20e9867628483/cmf-1.0.5-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,284 Found link https://files.pythonhosted.org/packages/d2/5b/da54d44ec0dab94915ed38e2182b4bb6a27102732d3f6bae9022030484bd/cmf-1.0.5.tar.gz (from https://pypi.org/simple/cmf/) (requires-python:>=2.7), version: 1.0.5 2025-09-04T18:44:59,285 Skipping link: No binaries permitted for cmf: 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(requires-python:>=2.7) 2025-09-04T18:44:59,285 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/ca/c4/acf58c94a0a584b53614dc488dbb3fa9e49767f58c112c1d5ecd260b7840/cmf-1.1.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,285 Skipping link: No binaries permitted for cmf: https://files.pythonhosted.org/packages/5b/96/461c3a91fd365e9ecbd36e4cda07783bb562e4662d1dc7ffcf888f956d75/cmf-1.1.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,286 Found link https://files.pythonhosted.org/packages/76/18/82c8572c321beef83a5ad24db4d74c019813c2f58a79a05ae2ff717f9847/cmf-1.1.0.tar.gz (from https://pypi.org/simple/cmf/) (requires-python:>=2.7), version: 1.1.0 2025-09-04T18:44:59,286 Skipping link: No binaries permitted for cmf: 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https://archive1.piwheels.org/simple/cmf/cmf-1.0.2-cp35-cp35m-linux_armv6l.whl#sha256=c507240fe534056c47a747059783be776e9e0f242a180ddf40e96c10bd089d1b (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,437 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=857aa2465dd69bae06e068fcd23906128e2bff716c82f54769464e5e03573c46 (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,438 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=857aa2465dd69bae06e068fcd23906128e2bff716c82f54769464e5e03573c46 (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,438 Skipping link: No binaries permitted for cmf: 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https://archive1.piwheels.org/simple/cmf/cmf-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=ad4bbc2082f41778c7ddc3700eebbdf45383a378ce65d3acf166bae2f8af67ce (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,438 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.1-cp34-cp34m-linux_armv7l.whl#sha256=81151374beaa359ae8b0b20a9c985b8ceb233cc607af8fa08b9c407db69d511b (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,438 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.1-cp34-cp34m-linux_armv6l.whl#sha256=81151374beaa359ae8b0b20a9c985b8ceb233cc607af8fa08b9c407db69d511b (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,439 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.1-cp35-cp35m-linux_armv6l.whl#sha256=d7477fd54b60538a269b064e69c2bdd067024347cdfad534dee58da890f89487 (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,439 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.1-cp35-cp35m-linux_armv7l.whl#sha256=d7477fd54b60538a269b064e69c2bdd067024347cdfad534dee58da890f89487 (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,439 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=58085dc9b6ec66375071c018656485741cf321748a8b9c3ab2278a435aae3190 (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,439 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=58085dc9b6ec66375071c018656485741cf321748a8b9c3ab2278a435aae3190 (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,439 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=756377432226df0489015af207daed3fa954dd2cd674ca34990c43c71ed015d8 (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,439 Skipping link: No binaries permitted for cmf: https://archive1.piwheels.org/simple/cmf/cmf-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=756377432226df0489015af207daed3fa954dd2cd674ca34990c43c71ed015d8 (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,439 Skipping link: No binaries permitted for cmf: https://www.piwheels.org/simple/cmf/cmf-1.0.1-cp313-cp313-linux_armv6l.whl#sha256=6c7ec7eddc5c5f123072230f503c22e344366954c6476018722be362e27f7e0e (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,440 Skipping link: No binaries permitted for cmf: https://www.piwheels.org/simple/cmf/cmf-1.0.1-cp313-cp313-linux_armv7l.whl#sha256=6c7ec7eddc5c5f123072230f503c22e344366954c6476018722be362e27f7e0e (from https://www.piwheels.org/simple/cmf/) (requires-python:>=2.7) 2025-09-04T18:44:59,440 Skipping link: not a file: https://www.piwheels.org/simple/cmf/ 2025-09-04T18:44:59,440 Skipping link: not a file: https://pypi.org/simple/cmf/ 2025-09-04T18:44:59,463 Given no hashes to check 1 links for project 'cmf': discarding no candidates 2025-09-04T18:44:59,464 Collecting cmf==1.2 2025-09-04T18:44:59,466 Created temporary directory: /tmp/pip-unpack-k5tranx4 2025-09-04T18:44:59,856 Downloading cmf-1.2.tar.gz (2.2 MB) 2025-09-04T18:45:00,423 Added cmf==1.2 from https://files.pythonhosted.org/packages/c9/94/48fe5455fa65e1062f299959766ded328eac31c022366f2676905032eda7/cmf-1.2.tar.gz to build tracker '/tmp/pip-build-tracker-nyivcbn0' 2025-09-04T18:45:00,424 Running setup.py (path:/tmp/pip-wheel-xts4y4z_/cmf_d9578413ca044e719d923df38d7fb424/setup.py) egg_info for package cmf 2025-09-04T18:45:00,424 Created temporary directory: /tmp/pip-pip-egg-info-82a2xgmm 2025-09-04T18:45:00,424 Preparing metadata (setup.py): started 2025-09-04T18:45:00,425 Running command python setup.py egg_info 2025-09-04T18:45:01,710 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-04T18:45:01,710 !! 2025-09-04T18:45:01,710 ******************************************************************************** 2025-09-04T18:45:01,711 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-04T18:45:01,711 License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) 2025-09-04T18:45:01,711 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-04T18:45:01,711 ******************************************************************************** 2025-09-04T18:45:01,711 !! 2025-09-04T18:45:01,711 self._finalize_license_expression() 2025-09-04T18:45:01,785 running egg_info 2025-09-04T18:45:01,861 creating /tmp/pip-pip-egg-info-82a2xgmm/cmf.egg-info 2025-09-04T18:45:01,861 writing /tmp/pip-pip-egg-info-82a2xgmm/cmf.egg-info/PKG-INFO 2025-09-04T18:45:01,862 writing dependency_links to /tmp/pip-pip-egg-info-82a2xgmm/cmf.egg-info/dependency_links.txt 2025-09-04T18:45:01,863 writing top-level names to /tmp/pip-pip-egg-info-82a2xgmm/cmf.egg-info/top_level.txt 2025-09-04T18:45:01,863 writing manifest file '/tmp/pip-pip-egg-info-82a2xgmm/cmf.egg-info/SOURCES.txt' 2025-09-04T18:45:01,939 /usr/local/lib/python3.13/dist-packages/setuptools/command/sdist.py:122: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. 2025-09-04T18:45:01,939 !! 2025-09-04T18:45:01,939 ******************************************************************************** 2025-09-04T18:45:01,939 Custom 'build_py' does not implement 'get_data_files_without_manifest'. 2025-09-04T18:45:01,939 Please extend command classes from setuptools instead of distutils. 2025-09-04T18:45:01,940 See https://peps.python.org/pep-0632/ for details. 2025-09-04T18:45:01,940 ******************************************************************************** 2025-09-04T18:45:01,940 !! 2025-09-04T18:45:01,940 self._add_data_files(self._safe_data_files(build_py)) 2025-09-04T18:45:02,013 reading manifest file '/tmp/pip-pip-egg-info-82a2xgmm/cmf.egg-info/SOURCES.txt' 2025-09-04T18:45:02,014 reading manifest template 'MANIFEST.in' 2025-09-04T18:45:02,047 warning: no files found matching '*.dox' under directory 'cmf' 2025-09-04T18:45:02,067 warning: no files found matching '*.txt' under directory 'cmf' 2025-09-04T18:45:02,076 writing manifest file '/tmp/pip-pip-egg-info-82a2xgmm/cmf.egg-info/SOURCES.txt' 2025-09-04T18:45:02,077 build ok 2025-09-04T18:45:02,214 Preparing metadata (setup.py): finished with status 'done' 2025-09-04T18:45:02,219 Source in /tmp/pip-wheel-xts4y4z_/cmf_d9578413ca044e719d923df38d7fb424 has version 1.2, which satisfies requirement cmf==1.2 from https://files.pythonhosted.org/packages/c9/94/48fe5455fa65e1062f299959766ded328eac31c022366f2676905032eda7/cmf-1.2.tar.gz 2025-09-04T18:45:02,219 Removed cmf==1.2 from https://files.pythonhosted.org/packages/c9/94/48fe5455fa65e1062f299959766ded328eac31c022366f2676905032eda7/cmf-1.2.tar.gz from build tracker '/tmp/pip-build-tracker-nyivcbn0' 2025-09-04T18:45:02,223 Created temporary directory: /tmp/pip-unpack-h2mrovhe 2025-09-04T18:45:02,224 Created temporary directory: /tmp/pip-unpack-fixftzjl 2025-09-04T18:45:02,224 Building wheels for collected packages: cmf 2025-09-04T18:45:02,225 Created temporary directory: /tmp/pip-wheel-4hiug8pz 2025-09-04T18:45:02,226 DEPRECATION: Building 'cmf' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'cmf'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-04T18:45:02,227 Building wheel for cmf (setup.py): started 2025-09-04T18:45:02,227 Destination directory: /tmp/pip-wheel-4hiug8pz 2025-09-04T18:45:02,227 Running command python setup.py bdist_wheel 2025-09-04T18:45:03,508 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-04T18:45:03,508 !! 2025-09-04T18:45:03,508 ******************************************************************************** 2025-09-04T18:45:03,508 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-04T18:45:03,509 License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) 2025-09-04T18:45:03,509 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-04T18:45:03,509 ******************************************************************************** 2025-09-04T18:45:03,509 !! 2025-09-04T18:45:03,509 self._finalize_license_expression() 2025-09-04T18:45:03,509 running bdist_wheel 2025-09-04T18:45:03,813 running build 2025-09-04T18:45:03,813 running build_py 2025-09-04T18:45:03,815 creating build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,816 copying cmf/reach_factory.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,816 copying cmf/fit_retention_curve.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,817 copying cmf/__init__.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,817 copying cmf/jacobian.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,818 copying cmf/cmf_core.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,820 copying cmf/cell_factory.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,821 copying cmf/describe.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,821 copying cmf/extend_project.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,822 copying cmf/soil.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,823 copying cmf/stopwatch.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,823 copying cmf/geos_shapereader.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,824 copying cmf/maps.py -> build/lib.linux-armv7l-cpython-313/cmf 2025-09-04T18:45:03,824 creating build/lib.linux-armv7l-cpython-313/cmf/draw 2025-09-04T18:45:03,825 copying cmf/draw/draw_misc.py -> build/lib.linux-armv7l-cpython-313/cmf/draw 2025-09-04T18:45:03,825 copying cmf/draw/__init__.py -> build/lib.linux-armv7l-cpython-313/cmf/draw 2025-09-04T18:45:03,826 copying cmf/draw/shapemap.py -> build/lib.linux-armv7l-cpython-313/cmf/draw 2025-09-04T18:45:03,826 copying cmf/draw/hillplot.py -> build/lib.linux-armv7l-cpython-313/cmf/draw 2025-09-04T18:45:03,827 creating build/lib.linux-armv7l-cpython-313/cmf/geometry 2025-09-04T18:45:03,827 copying cmf/geometry/qtree.py -> build/lib.linux-armv7l-cpython-313/cmf/geometry 2025-09-04T18:45:03,828 copying cmf/geometry/geocell.py -> build/lib.linux-armv7l-cpython-313/cmf/geometry 2025-09-04T18:45:03,828 copying cmf/geometry/__init__.py -> build/lib.linux-armv7l-cpython-313/cmf/geometry 2025-09-04T18:45:03,830 running build_ext 2025-09-04T18:45:04,203 building 'cmf._cmf_core' extension 2025-09-04T18:45:04,219 creating build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/atmosphere 2025-09-04T18:45:04,221 creating build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/geometry 2025-09-04T18:45:04,221 creating build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators 2025-09-04T18:45:04,222 creating build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src 2025-09-04T18:45:04,225 creating build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/reach 2025-09-04T18:45:04,226 creating build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/Soil 2025-09-04T18:45:04,227 creating build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections 2025-09-04T18:45:04,228 creating build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/vegetation 2025-09-04T18:45:04,229 creating build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water 2025-09-04T18:45:04,230 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/atmosphere/Weather.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/atmosphere/Weather.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:45:07,342 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/atmosphere/meteorology.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/atmosphere/meteorology.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:45:09,885 In file included from cmf/cmf_core_src/atmosphere/../reach/ManningConnection.h:23, 2025-09-04T18:45:09,885 from cmf/cmf_core_src/atmosphere/../reach/Reach.h:26, 2025-09-04T18:45:09,885 from cmf/cmf_core_src/atmosphere/../project.h:28, 2025-09-04T18:45:09,886 from cmf/cmf_core_src/atmosphere/meteorology.cpp:24: 2025-09-04T18:45:09,886 cmf/cmf_core_src/atmosphere/../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:45:09,886 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:45:09,886 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:45:09,886 cmf/cmf_core_src/atmosphere/../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:45:09,886 75 | void set_height_function(const IChannel& val); 2025-09-04T18:45:09,886 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:45:15,615 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/atmosphere/precipitation.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/atmosphere/precipitation.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:45:18,112 In file included from cmf/cmf_core_src/atmosphere/../reach/ManningConnection.h:23, 2025-09-04T18:45:18,113 from cmf/cmf_core_src/atmosphere/../reach/Reach.h:26, 2025-09-04T18:45:18,113 from cmf/cmf_core_src/atmosphere/../project.h:28, 2025-09-04T18:45:18,113 from cmf/cmf_core_src/atmosphere/precipitation.cpp:2: 2025-09-04T18:45:18,113 cmf/cmf_core_src/atmosphere/../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:45:18,113 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:45:18,113 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:45:18,113 cmf/cmf_core_src/atmosphere/../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:45:18,114 75 | void set_height_function(const IChannel& val); 2025-09-04T18:45:18,114 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:45:22,375 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/cmf.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/cmf.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:45:22,436 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/cmf_wrap.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/cmf_wrap.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:45:26,142 In file included from cmf/cmf_core_src/upslope/surfacewater.h:20, 2025-09-04T18:45:26,142 from cmf/cmf_core_src/cmf_wrap.cpp:4381: 2025-09-04T18:45:26,142 cmf/cmf_core_src/upslope/../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:45:26,142 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:45:26,142 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:45:26,142 In file included from cmf/cmf_core_src/cmf_wrap.cpp:4544: 2025-09-04T18:45:26,142 cmf/cmf_core_src/reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:45:26,143 75 | void set_height_function(const IChannel& val); 2025-09-04T18:45:26,143 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:48:12,329 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/geometry/geometry.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/geometry/geometry.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:14,215 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/Integrator.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/Integrator.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:17,231 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/RKFintegrator.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/RKFintegrator.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:21,336 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/WaterSoluteIntegrator.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/WaterSoluteIntegrator.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:27,345 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/bdf2.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/bdf2.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:31,669 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/cvodeintegrator.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/cvodeintegrator.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:35,752 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/implicit_euler.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/implicit_euler.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:39,908 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/multiintegrator.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/multiintegrator.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:44,035 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:47,754 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_band.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_band.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:48,063 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_bandpre.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_bandpre.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:48,502 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_bbdpre.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_bbdpre.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:48,992 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_dense.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_dense.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:49,287 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_diag.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_diag.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:49,647 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_direct.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_direct.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:50,116 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_io.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_io.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:50,791 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_spbcgs.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_spbcgs.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:51,141 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_spgmr.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_spgmr.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:51,492 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_spils.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_spils.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:51,956 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_sptfqmr.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_sptfqmr.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:52,305 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/nvector_serial.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/nvector_serial.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:53,320 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_band.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_band.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:53,827 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_dense.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_dense.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:54,651 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_direct.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_direct.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:55,133 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_iterative.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_iterative.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:55,593 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_math.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_math.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:55,913 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_nvector.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_nvector.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:56,229 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_spbcgs.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_spbcgs.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:56,625 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_spgmr.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_spgmr.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:57,228 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_sptfqmr.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_sptfqmr.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:48:57,822 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/num_array.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/num_array.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:01,298 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/real.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/real.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:02,296 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/spline.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/spline.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:03,660 cmf/cmf_core_src/math/spline.cpp: In member function ‘real cmf::math::cubicspline::operator()(real)’: 2025-09-04T18:49:03,660 cmf/cmf_core_src/math/spline.cpp:59:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-09-04T18:49:03,660 59 | for(size_t i=0;i::quiet_NaN(); 2025-09-04T18:49:03,661 | ^~~~~~ 2025-09-04T18:49:04,225 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/statevariable.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/statevariable.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:06,937 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/time.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/time.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:08,881 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/math/timeseries.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/timeseries.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:14,209 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/project.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/project.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:16,682 In file included from cmf/cmf_core_src/reach/ManningConnection.h:23, 2025-09-04T18:49:16,682 from cmf/cmf_core_src/reach/Reach.h:26, 2025-09-04T18:49:16,682 from cmf/cmf_core_src/project.h:28, 2025-09-04T18:49:16,682 from cmf/cmf_core_src/project.cpp:19: 2025-09-04T18:49:16,682 cmf/cmf_core_src/reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:49:16,682 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:49:16,682 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:49:16,683 cmf/cmf_core_src/reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:49:16,683 75 | void set_height_function(const IChannel& val); 2025-09-04T18:49:16,683 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:49:22,777 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/reach/ManningConnection.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/reach/ManningConnection.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:28,535 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/reach/OpenWaterStorage.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/reach/OpenWaterStorage.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:32,690 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/reach/Reach.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/reach/Reach.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:35,213 In file included from cmf/cmf_core_src/reach/ManningConnection.h:23, 2025-09-04T18:49:35,213 from cmf/cmf_core_src/reach/Reach.h:26, 2025-09-04T18:49:35,213 from cmf/cmf_core_src/reach/Reach.cpp:19: 2025-09-04T18:49:35,213 cmf/cmf_core_src/reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:49:35,213 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:49:35,213 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:49:35,213 cmf/cmf_core_src/reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:49:35,214 75 | void set_height_function(const IChannel& val); 2025-09-04T18:49:35,214 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:49:41,556 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/reach/ReachType.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/reach/ReachType.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:43,858 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/Soil/RetentionCurve.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/Soil/RetentionCurve.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:47,021 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/SoilLayer.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/SoilLayer.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:52,240 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/Topology.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/Topology.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:49:56,973 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/algorithm.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/algorithm.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:50:03,797 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/cell.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/cell.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:50:06,308 In file included from cmf/cmf_core_src/upslope/../reach/ManningConnection.h:23, 2025-09-04T18:50:06,308 from cmf/cmf_core_src/upslope/../reach/Reach.h:26, 2025-09-04T18:50:06,308 from cmf/cmf_core_src/upslope/../project.h:28, 2025-09-04T18:50:06,308 from cmf/cmf_core_src/upslope/cell.cpp:21: 2025-09-04T18:50:06,308 cmf/cmf_core_src/upslope/../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:50:06,309 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:50:06,309 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:50:06,309 cmf/cmf_core_src/upslope/../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:50:06,309 75 | void set_height_function(const IChannel& val); 2025-09-04T18:50:06,309 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:50:15,494 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/cell_vector.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/cell_vector.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:50:20,320 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/connections/AtmosphericFluxes.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/AtmosphericFluxes.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:50:22,821 In file included from cmf/cmf_core_src/upslope/connections/../../reach/ManningConnection.h:23, 2025-09-04T18:50:22,821 from cmf/cmf_core_src/upslope/connections/../../reach/Reach.h:26, 2025-09-04T18:50:22,821 from cmf/cmf_core_src/upslope/connections/../../project.h:28, 2025-09-04T18:50:22,821 from cmf/cmf_core_src/upslope/connections/AtmosphericFluxes.h:24, 2025-09-04T18:50:22,822 from cmf/cmf_core_src/upslope/connections/AtmosphericFluxes.cpp:19: 2025-09-04T18:50:22,822 cmf/cmf_core_src/upslope/connections/../../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:50:22,822 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:50:22,822 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:50:22,822 cmf/cmf_core_src/upslope/connections/../../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:50:22,822 75 | void set_height_function(const IChannel& val); 2025-09-04T18:50:22,822 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:50:24,524 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/connections/Percolation.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/Percolation.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:50:32,483 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/connections/infiltration.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/infiltration.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:50:38,670 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/connections/subsurfacefluxes.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/subsurfacefluxes.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:50:47,797 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/connections/surfacefluxes.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/surfacefluxes.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:50:50,317 In file included from cmf/cmf_core_src/upslope/connections/../../reach/ManningConnection.h:23, 2025-09-04T18:50:50,317 from cmf/cmf_core_src/upslope/connections/../../reach/Reach.h:26, 2025-09-04T18:50:50,317 from cmf/cmf_core_src/upslope/connections/../../project.h:28, 2025-09-04T18:50:50,317 from cmf/cmf_core_src/upslope/connections/AtmosphericFluxes.h:24, 2025-09-04T18:50:50,317 from cmf/cmf_core_src/upslope/connections/surfacefluxes.h:25, 2025-09-04T18:50:50,317 from cmf/cmf_core_src/upslope/connections/surfacefluxes.cpp:19: 2025-09-04T18:50:50,318 cmf/cmf_core_src/upslope/connections/../../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:50:50,318 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:50:50,318 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:50:50,318 cmf/cmf_core_src/upslope/connections/../../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:50:50,318 75 | void set_height_function(const IChannel& val); 2025-09-04T18:50:50,318 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:50:53,269 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/groundwater.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/groundwater.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:50:55,885 In file included from cmf/cmf_core_src/upslope/../reach/ManningConnection.h:23, 2025-09-04T18:50:55,886 from cmf/cmf_core_src/upslope/../reach/Reach.h:26, 2025-09-04T18:50:55,886 from cmf/cmf_core_src/upslope/../project.h:28, 2025-09-04T18:50:55,886 from cmf/cmf_core_src/upslope/groundwater.cpp:2: 2025-09-04T18:50:55,886 cmf/cmf_core_src/upslope/../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:50:55,886 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:50:55,886 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:50:55,886 cmf/cmf_core_src/upslope/../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:50:55,887 75 | void set_height_function(const IChannel& val); 2025-09-04T18:50:55,887 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:50:59,074 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/layer_list.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/layer_list.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:04,101 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/macropore.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/macropore.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:14,056 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/surfacewater.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/surfacewater.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:20,616 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/vegetation/ET.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/vegetation/ET.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:28,200 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/vegetation/ShuttleworthWallace.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/vegetation/ShuttleworthWallace.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:30,836 In file included from cmf/cmf_core_src/upslope/vegetation/ET.h:23, 2025-09-04T18:51:30,836 from cmf/cmf_core_src/upslope/vegetation/ShuttleworthWallace.h:25, 2025-09-04T18:51:30,836 from cmf/cmf_core_src/upslope/vegetation/ShuttleworthWallace.cpp:19: 2025-09-04T18:51:30,837 cmf/cmf_core_src/upslope/vegetation/../../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:51:30,837 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:51:30,837 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:51:30,837 In file included from cmf/cmf_core_src/upslope/vegetation/../connections/../../project.h:28, 2025-09-04T18:51:30,837 from cmf/cmf_core_src/upslope/vegetation/../connections/AtmosphericFluxes.h:24, 2025-09-04T18:51:30,837 from cmf/cmf_core_src/upslope/vegetation/ShuttleworthWallace.cpp:21: 2025-09-04T18:51:30,837 cmf/cmf_core_src/upslope/vegetation/../connections/../../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:51:30,837 75 | void set_height_function(const IChannel& val); 2025-09-04T18:51:30,837 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:51:37,482 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/upslope/vegetation/waterstress.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/vegetation/waterstress.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:41,780 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/Solute.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/Solute.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:44,867 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/SoluteStorage.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/SoluteStorage.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:48,525 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/WaterStorage.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/WaterStorage.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:50,994 In file included from cmf/cmf_core_src/water/../reach/ManningConnection.h:23, 2025-09-04T18:51:50,994 from cmf/cmf_core_src/water/../reach/Reach.h:26, 2025-09-04T18:51:50,994 from cmf/cmf_core_src/water/../project.h:28, 2025-09-04T18:51:50,994 from cmf/cmf_core_src/water/WaterStorage.cpp:20: 2025-09-04T18:51:50,994 cmf/cmf_core_src/water/../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:51:50,994 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:51:50,995 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:51:50,995 cmf/cmf_core_src/water/../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:51:50,995 75 | void set_height_function(const IChannel& val); 2025-09-04T18:51:50,995 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:51:51,084 cmf/cmf_core_src/water/WaterStorage.cpp: In member function ‘void cmf::water::WaterStorage::set_state_variable_content(char)’: 2025-09-04T18:51:51,085 cmf/cmf_core_src/water/WaterStorage.cpp:79:37: warning: catching polymorphic type ‘class std::runtime_error’ by value [-Wcatch-value=] 2025-09-04T18:51:51,085 79 | catch (std::runtime_error) { 2025-09-04T18:51:51,085 | ^~~~~~~~~~~~~ 2025-09-04T18:51:54,282 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/adsorption.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/adsorption.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:51:55,487 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/boundary_condition.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/boundary_condition.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:52:00,371 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/collections.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/collections.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:52:02,501 cmf/cmf_core_src/water/collections.cpp: In member function ‘ptrdiff_t cmf::water::node_list::set_potentials(const cmf::math::num_array&)’: 2025-09-04T18:52:02,501 cmf/cmf_core_src/water/collections.cpp:112:29: warning: catching polymorphic type ‘class std::runtime_error’ by value [-Wcatch-value=] 2025-09-04T18:52:02,501 112 | catch (std::runtime_error) 2025-09-04T18:52:02,501 | ^~~~~~~~~~~~~ 2025-09-04T18:52:06,587 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/flux_connection.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/flux_connection.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:52:09,116 In file included from cmf/cmf_core_src/water/../reach/ManningConnection.h:23, 2025-09-04T18:52:09,116 from cmf/cmf_core_src/water/../reach/Reach.h:26, 2025-09-04T18:52:09,117 from cmf/cmf_core_src/water/../project.h:28, 2025-09-04T18:52:09,117 from cmf/cmf_core_src/water/flux_connection.cpp:21: 2025-09-04T18:52:09,117 cmf/cmf_core_src/water/../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:52:09,117 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:52:09,117 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:52:09,117 cmf/cmf_core_src/water/../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:52:09,117 75 | void set_height_function(const IChannel& val); 2025-09-04T18:52:09,117 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:52:15,817 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/flux_node.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/flux_node.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:52:18,336 In file included from cmf/cmf_core_src/water/../reach/ManningConnection.h:23, 2025-09-04T18:52:18,337 from cmf/cmf_core_src/water/../reach/Reach.h:26, 2025-09-04T18:52:18,337 from cmf/cmf_core_src/water/../project.h:28, 2025-09-04T18:52:18,337 from cmf/cmf_core_src/water/flux_node.cpp:22: 2025-09-04T18:52:18,337 cmf/cmf_core_src/water/../reach/OpenWaterStorage.h:52:38: warning: ‘virtual void cmf::river::OpenWaterStorage::set_height_function(const cmf::river::IVolumeHeightFunction&)’ was hidden [-Woverloaded-virtual=] 2025-09-04T18:52:18,337 52 | virtual void set_height_function(const IVolumeHeightFunction& val){ 2025-09-04T18:52:18,337 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:52:18,337 cmf/cmf_core_src/water/../reach/Reach.h:75:30: note: by ‘void cmf::river::Reach::set_height_function(const cmf::river::IChannel&)’ 2025-09-04T18:52:18,337 75 | void set_height_function(const IChannel& val); 2025-09-04T18:52:18,338 | ^~~~~~~~~~~~~~~~~~~ 2025-09-04T18:52:22,036 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/simple_connections.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/simple_connections.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:52:29,887 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Icmf/cmf_core_src/math/integrators/sundials_cvode/include -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cmf/cmf_core_src/water/system_bridge.cpp -o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/system_bridge.o -Wno-comment -Wno-reorder -Wno-deprecated -Wno-unused -Wno-sign-compare -ggdb -std=c++11 -fopenmp 2025-09-04T18:52:34,017 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/atmosphere/Weather.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/atmosphere/meteorology.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/atmosphere/precipitation.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/cmf.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/cmf_wrap.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/geometry/geometry.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/Integrator.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/RKFintegrator.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/WaterSoluteIntegrator.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/bdf2.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/cvodeintegrator.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/implicit_euler.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/multiintegrator.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_band.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_bandpre.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_bbdpre.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_dense.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_diag.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_direct.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_io.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_spbcgs.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_spgmr.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_spils.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/cvode_sptfqmr.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/nvector_serial.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_band.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_dense.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_direct.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_iterative.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_math.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_nvector.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_spbcgs.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_spgmr.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/integrators/sundials_cvode/src/sundials_sptfqmr.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/num_array.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/real.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/spline.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/statevariable.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/time.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/math/timeseries.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/project.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/reach/ManningConnection.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/reach/OpenWaterStorage.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/reach/Reach.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/reach/ReachType.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/Soil/RetentionCurve.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/SoilLayer.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/Topology.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/algorithm.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/cell.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/cell_vector.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/AtmosphericFluxes.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/Percolation.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/infiltration.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/subsurfacefluxes.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/connections/surfacefluxes.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/groundwater.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/layer_list.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/macropore.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/surfacewater.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/vegetation/ET.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/vegetation/ShuttleworthWallace.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/upslope/vegetation/waterstress.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/Solute.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/SoluteStorage.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/WaterStorage.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/adsorption.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/boundary_condition.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/collections.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/flux_connection.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/flux_node.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/simple_connections.o build/temp.linux-armv7l-cpython-313/cmf/cmf_core_src/water/system_bridge.o -L/usr/lib/arm-linux-gnueabihf -lgomp -o build/lib.linux-armv7l-cpython-313/cmf/_cmf_core.cpython-313-arm-linux-gnueabihf.so -ggdb -fopenmp 2025-09-04T18:52:35,654 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-04T18:52:35,654 !! 2025-09-04T18:52:35,654 ******************************************************************************** 2025-09-04T18:52:35,654 Please avoid running ``setup.py`` directly. 2025-09-04T18:52:35,654 Instead, use pypa/build, pypa/installer or other 2025-09-04T18:52:35,655 standards-based tools. 2025-09-04T18:52:35,655 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-04T18:52:35,655 or your builds will no longer be supported. 2025-09-04T18:52:35,655 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-04T18:52:35,655 ******************************************************************************** 2025-09-04T18:52:35,655 !! 2025-09-04T18:52:35,656 self.initialize_options() 2025-09-04T18:52:35,733 installing to build/bdist.linux-armv7l/wheel 2025-09-04T18:52:35,733 running install 2025-09-04T18:52:35,755 running install_lib 2025-09-04T18:52:35,829 creating build/bdist.linux-armv7l/wheel 2025-09-04T18:52:35,830 creating build/bdist.linux-armv7l/wheel/cmf 2025-09-04T18:52:35,830 copying build/lib.linux-armv7l-cpython-313/cmf/_cmf_core.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,920 creating build/bdist.linux-armv7l/wheel/cmf/geometry 2025-09-04T18:52:35,920 copying build/lib.linux-armv7l-cpython-313/cmf/geometry/__init__.py -> build/bdist.linux-armv7l/wheel/./cmf/geometry 2025-09-04T18:52:35,920 copying build/lib.linux-armv7l-cpython-313/cmf/geometry/geocell.py -> build/bdist.linux-armv7l/wheel/./cmf/geometry 2025-09-04T18:52:35,921 copying build/lib.linux-armv7l-cpython-313/cmf/geometry/qtree.py -> build/bdist.linux-armv7l/wheel/./cmf/geometry 2025-09-04T18:52:35,921 creating build/bdist.linux-armv7l/wheel/cmf/draw 2025-09-04T18:52:35,921 copying build/lib.linux-armv7l-cpython-313/cmf/draw/hillplot.py -> build/bdist.linux-armv7l/wheel/./cmf/draw 2025-09-04T18:52:35,922 copying build/lib.linux-armv7l-cpython-313/cmf/draw/shapemap.py -> build/bdist.linux-armv7l/wheel/./cmf/draw 2025-09-04T18:52:35,922 copying build/lib.linux-armv7l-cpython-313/cmf/draw/__init__.py -> build/bdist.linux-armv7l/wheel/./cmf/draw 2025-09-04T18:52:35,923 copying build/lib.linux-armv7l-cpython-313/cmf/draw/draw_misc.py -> build/bdist.linux-armv7l/wheel/./cmf/draw 2025-09-04T18:52:35,923 copying build/lib.linux-armv7l-cpython-313/cmf/maps.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,923 copying build/lib.linux-armv7l-cpython-313/cmf/geos_shapereader.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,924 copying build/lib.linux-armv7l-cpython-313/cmf/stopwatch.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,924 copying build/lib.linux-armv7l-cpython-313/cmf/soil.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,925 copying build/lib.linux-armv7l-cpython-313/cmf/extend_project.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,925 copying build/lib.linux-armv7l-cpython-313/cmf/describe.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,925 copying build/lib.linux-armv7l-cpython-313/cmf/cell_factory.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,926 copying build/lib.linux-armv7l-cpython-313/cmf/cmf_core.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,928 copying build/lib.linux-armv7l-cpython-313/cmf/jacobian.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,928 copying build/lib.linux-armv7l-cpython-313/cmf/__init__.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,929 copying build/lib.linux-armv7l-cpython-313/cmf/fit_retention_curve.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,929 copying build/lib.linux-armv7l-cpython-313/cmf/reach_factory.py -> build/bdist.linux-armv7l/wheel/./cmf 2025-09-04T18:52:35,930 running install_egg_info 2025-09-04T18:52:36,008 running egg_info 2025-09-04T18:52:36,082 writing cmf.egg-info/PKG-INFO 2025-09-04T18:52:36,083 writing dependency_links to cmf.egg-info/dependency_links.txt 2025-09-04T18:52:36,084 writing top-level names to cmf.egg-info/top_level.txt 2025-09-04T18:52:36,087 /usr/local/lib/python3.13/dist-packages/setuptools/command/sdist.py:122: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. 2025-09-04T18:52:36,087 !! 2025-09-04T18:52:36,088 ******************************************************************************** 2025-09-04T18:52:36,088 Custom 'build_py' does not implement 'get_data_files_without_manifest'. 2025-09-04T18:52:36,088 Please extend command classes from setuptools instead of distutils. 2025-09-04T18:52:36,088 See https://peps.python.org/pep-0632/ for details. 2025-09-04T18:52:36,088 ******************************************************************************** 2025-09-04T18:52:36,088 !! 2025-09-04T18:52:36,088 self._add_data_files(self._safe_data_files(build_py)) 2025-09-04T18:52:36,163 reading manifest file 'cmf.egg-info/SOURCES.txt' 2025-09-04T18:52:36,175 reading manifest template 'MANIFEST.in' 2025-09-04T18:52:36,208 warning: no files found matching '*.dox' under directory 'cmf' 2025-09-04T18:52:36,229 warning: no files found matching '*.txt' under directory 'cmf' 2025-09-04T18:52:36,239 writing manifest file 'cmf.egg-info/SOURCES.txt' 2025-09-04T18:52:36,240 Copying cmf.egg-info to build/bdist.linux-armv7l/wheel/./cmf-1.2-py3.13.egg-info 2025-09-04T18:52:36,241 running install_scripts 2025-09-04T18:52:36,293 creating build/bdist.linux-armv7l/wheel/cmf-1.2.dist-info/WHEEL 2025-09-04T18:52:36,294 creating '/tmp/pip-wheel-4hiug8pz/cmf-1.2-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-04T18:52:36,295 adding 'cmf/__init__.py' 2025-09-04T18:52:40,731 adding 'cmf/_cmf_core.cpython-313-arm-linux-gnueabihf.so' 2025-09-04T18:52:40,891 adding 'cmf/cell_factory.py' 2025-09-04T18:52:40,934 adding 'cmf/cmf_core.py' 2025-09-04T18:52:40,938 adding 'cmf/describe.py' 2025-09-04T18:52:40,939 adding 'cmf/extend_project.py' 2025-09-04T18:52:40,940 adding 'cmf/fit_retention_curve.py' 2025-09-04T18:52:40,941 adding 'cmf/geos_shapereader.py' 2025-09-04T18:52:40,942 adding 'cmf/jacobian.py' 2025-09-04T18:52:40,943 adding 'cmf/maps.py' 2025-09-04T18:52:40,945 adding 'cmf/reach_factory.py' 2025-09-04T18:52:40,946 adding 'cmf/soil.py' 2025-09-04T18:52:40,947 adding 'cmf/stopwatch.py' 2025-09-04T18:52:40,948 adding 'cmf/draw/__init__.py' 2025-09-04T18:52:40,949 adding 'cmf/draw/draw_misc.py' 2025-09-04T18:52:40,950 adding 'cmf/draw/hillplot.py' 2025-09-04T18:52:40,951 adding 'cmf/draw/shapemap.py' 2025-09-04T18:52:40,952 adding 'cmf/geometry/__init__.py' 2025-09-04T18:52:40,953 adding 'cmf/geometry/geocell.py' 2025-09-04T18:52:40,953 adding 'cmf/geometry/qtree.py' 2025-09-04T18:52:40,955 adding 'cmf-1.2.dist-info/METADATA' 2025-09-04T18:52:40,955 adding 'cmf-1.2.dist-info/WHEEL' 2025-09-04T18:52:40,956 adding 'cmf-1.2.dist-info/top_level.txt' 2025-09-04T18:52:40,957 adding 'cmf-1.2.dist-info/RECORD' 2025-09-04T18:52:40,957 removing build/bdist.linux-armv7l/wheel 2025-09-04T18:52:40,967 build ok 2025-09-04T18:52:41,148 Building wheel for cmf (setup.py): finished with status 'done' 2025-09-04T18:52:41,246 Created wheel for cmf: filename=cmf-1.2-cp313-cp313-linux_armv7l.whl size=9351859 sha256=af75981e2d509ecc70712cbffa61a325cd0d4ff051da8b5f36fab372abe2c647 2025-09-04T18:52:41,247 Stored in directory: /tmp/pip-ephem-wheel-cache-1iy4uzgc/wheels/e1/94/5a/1d3236fee06bd23e73742ed281e1efeef60d2ce37c0eb8aaf1 2025-09-04T18:52:41,256 Successfully built cmf 2025-09-04T18:52:41,276 Removed build tracker: '/tmp/pip-build-tracker-nyivcbn0'