2025-09-05T01:13:15,504 Created temporary directory: /tmp/pip-build-tracker-rtll8fqd 2025-09-05T01:13:15,505 Initialized build tracking at /tmp/pip-build-tracker-rtll8fqd 2025-09-05T01:13:15,505 Created build tracker: /tmp/pip-build-tracker-rtll8fqd 2025-09-05T01:13:15,505 Entered build tracker: /tmp/pip-build-tracker-rtll8fqd 2025-09-05T01:13:15,506 Created temporary directory: /tmp/pip-wheel-_bpcg7ao 2025-09-05T01:13:15,509 Created temporary directory: /tmp/pip-ephem-wheel-cache-mrtv3dc5 2025-09-05T01:13:15,567 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-05T01:13:15,569 2 location(s) to search for versions of forgi: 2025-09-05T01:13:15,569 * https://pypi.org/simple/forgi/ 2025-09-05T01:13:15,569 * https://www.piwheels.org/simple/forgi/ 2025-09-05T01:13:15,569 Fetching project page and analyzing links: https://pypi.org/simple/forgi/ 2025-09-05T01:13:15,570 Getting page https://pypi.org/simple/forgi/ 2025-09-05T01:13:15,571 Found index url https://pypi.org/simple/ 2025-09-05T01:13:15,641 Fetched page https://pypi.org/simple/forgi/ as application/vnd.pypi.simple.v1+json 2025-09-05T01:13:15,645 Skipping link: unsupported archive format: .exe: https://files.pythonhosted.org/packages/66/40/1e40afc410037da78b10b08eb1f681c3c4d4514abf774f93f255b9746b90/forgi-0.1.linux-x86_64.exe (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,645 Found link https://files.pythonhosted.org/packages/e7/1a/d38508a857d7ac4c4e75464529fa9834bbaf96078e62d6b93e831c86c0bb/forgi-0.1.tar.gz (from https://pypi.org/simple/forgi/), version: 0.1 2025-09-05T01:13:15,646 Skipping link: unsupported archive format: .exe: https://files.pythonhosted.org/packages/26/0f/024735a6e6d3077c5bfb5cfc2c398a66d293e4a6192ee88357edbeb66f09/forgi-0.20.linux-x86_64.exe (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,646 Found link https://files.pythonhosted.org/packages/f8/47/5b68cdb14c10ff946b7b53d130dbf644cdcb8663aee0f4a7a467094fa8e9/forgi-0.20.tar.gz (from https://pypi.org/simple/forgi/), version: 0.20 2025-09-05T01:13:15,646 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/e4/70/94d2e42b6a8f96fd38e57fe1d3cc05335ac2e7e3b6599223701321356e0e/forgi-1.0-py2.py3-none-any.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,646 Found link https://files.pythonhosted.org/packages/16/4e/a9b9cb9341a045b4febd75549314df78b7a09e801bdb835b10576b938b9d/forgi-1.0.tar.gz (from https://pypi.org/simple/forgi/), version: 1.0 2025-09-05T01:13:15,646 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/86/f7/812cba6327ac40a33d986b7d698a6d2193e64e7dfcd570abc6b4f86aede5/forgi-1.1-py2.py3-none-any.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,647 Found link https://files.pythonhosted.org/packages/61/29/273df63c66c18e8909aff10f66e9406f598f656659894405b1ad10b20654/forgi-1.1.tar.gz (from https://pypi.org/simple/forgi/), version: 1.1 2025-09-05T01:13:15,647 Found link https://files.pythonhosted.org/packages/69/94/583f97307ee7c68d8b3844c2171dd13d79aa64d38a4f05e7847bd7d98e28/forgi-2.0.1.tar.gz (from https://pypi.org/simple/forgi/), version: 2.0.1 2025-09-05T01:13:15,647 Found link https://files.pythonhosted.org/packages/ea/95/2fdfc3636ce7957d2581ef9813cd49af123afd718c4bcb41486dadd5babc/forgi-2.0.2.tar.gz (from https://pypi.org/simple/forgi/), version: 2.0.2 2025-09-05T01:13:15,647 Found link https://files.pythonhosted.org/packages/61/6d/54b072d5cb0acb992b981772e33d7f7a0dca1f4e7bbc1e5c799fa0eb380d/forgi-2.1.1.tar.gz (from https://pypi.org/simple/forgi/), version: 2.1.1 2025-09-05T01:13:15,647 Found link https://files.pythonhosted.org/packages/bb/50/206944d64095dd07960398f5d350a00c96e7f29689c64ae559292ba7cd20/forgi-2.1.2.tar.gz (from https://pypi.org/simple/forgi/), version: 2.1.2 2025-09-05T01:13:15,648 Found link https://files.pythonhosted.org/packages/cd/d8/31485b259d48619ff38ea6aa48ac2e5a04bd069a41846f2bc5b6b3d8b740/forgi-2.2.0.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.0 2025-09-05T01:13:15,648 Found link https://files.pythonhosted.org/packages/6b/6c/0767b9c276049346a1d6cc262d0adc99cda5a9eef64b590840677adf08ad/forgi-2.2.1.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.1 2025-09-05T01:13:15,648 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/41/96/74f23211eae17a7c2bd9b5683a4affa73e0197de09f081786c44839a3b86/forgi-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,648 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/c0/1f/80dfe394416cb3001586ef7f89203ea3e89ff4ecd27025927efeb6e52185/forgi-2.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,648 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/64/9e/ff9b8e397f4422341d493659e4fd298e257869eba6f42ef30b640f565c04/forgi-2.2.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,649 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/4d/87/785b11d57bf235cf35de5eae23b455a5281de184d08265a256a0c375bf39/forgi-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,649 Found link https://files.pythonhosted.org/packages/15/04/70c9e02d6c1cdd4a645f890411cc9cc346945d3fd4297c51185a883e042e/forgi-2.2.2.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.2 2025-09-05T01:13:15,649 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/d4/52/d6db1b63fa768fff0e8391993b1268b785f9937a6d3b5af76fdf3bfcf2db/forgi-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,649 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/9f/36/87d4606643d588a1a472e16b8365a20c4cfa83857b321b98e809d4597319/forgi-2.2.3-cp311-cp311-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,649 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/af/70/dea14557281b0a9427b9c6dd145bff00df18eeeb980634b6f14525326bff/forgi-2.2.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,649 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/c0/45/2c9cd672e2622ddba2323562db375783bb28dee1d9510ab70743d0308012/forgi-2.2.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,649 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/15/01/129655179fece949a98d94db022177c52af1a53d8db3a38d1beeb4009a94/forgi-2.2.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,650 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/1b/a1/d5082a78a51b95d3ce654c21b6e14101ab1b7dcb583ce63a56502918959a/forgi-2.2.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,650 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/77/d5/086e3c8d5be2b8478bc84090c7a7b5adfd0900f5ce7a4be0cbe6ca5eebea/forgi-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-09-05T01:13:15,650 Found link https://files.pythonhosted.org/packages/52/6b/743f2dd63c17845cfac90ad996932c4da691c0a600b07b0937301b2933cb/forgi-2.2.3.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.3 2025-09-05T01:13:15,650 Fetching project page and analyzing links: https://www.piwheels.org/simple/forgi/ 2025-09-05T01:13:15,651 Getting page https://www.piwheels.org/simple/forgi/ 2025-09-05T01:13:15,651 Found index url https://www.piwheels.org/simple/ 2025-09-05T01:13:15,741 Fetched page https://www.piwheels.org/simple/forgi/ as text/html 2025-09-05T01:13:15,749 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp311-cp311-linux_armv6l.whl#sha256=b027f5e7b0f7b46db75366c151b91416ed29ef1f6190489eb63d081d71ff6a67 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,749 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp311-cp311-linux_armv7l.whl#sha256=b027f5e7b0f7b46db75366c151b91416ed29ef1f6190489eb63d081d71ff6a67 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,749 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp37-cp37m-linux_armv6l.whl#sha256=8468ee2dcd344b3bb6315e4406433334f1cd884c2787504fc8bbfc63c4ed6cf6 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,749 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp37-cp37m-linux_armv7l.whl#sha256=8468ee2dcd344b3bb6315e4406433334f1cd884c2787504fc8bbfc63c4ed6cf6 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,749 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp39-cp39-linux_armv6l.whl#sha256=16d857958089fdb4da47c7bcbdb6468c0ed18945fc6e9005e3e2a62cb2b0cda3 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,749 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp39-cp39-linux_armv7l.whl#sha256=16d857958089fdb4da47c7bcbdb6468c0ed18945fc6e9005e3e2a62cb2b0cda3 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,750 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.2-cp39-cp39-linux_armv6l.whl#sha256=5d0330ff6aa2005e316c859df18383e5edc15ef2a55219d65fbd44614699955f (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,750 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.2-cp39-cp39-linux_armv7l.whl#sha256=5d0330ff6aa2005e316c859df18383e5edc15ef2a55219d65fbd44614699955f (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,750 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.2-cp37-cp37m-linux_armv6l.whl#sha256=4fd5cad6f7136b0688788fb72048f1db223ca322d71fd82290526b5e24638e90 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,750 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.2-cp37-cp37m-linux_armv7l.whl#sha256=4fd5cad6f7136b0688788fb72048f1db223ca322d71fd82290526b5e24638e90 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,750 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.1-cp37-cp37m-linux_armv6l.whl#sha256=e18b86582585f10c731579fb798ccdd9c07b446511f4285502befb39c9e03ab1 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,750 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.1-cp37-cp37m-linux_armv7l.whl#sha256=e18b86582585f10c731579fb798ccdd9c07b446511f4285502befb39c9e03ab1 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,750 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.0-cp37-cp37m-linux_armv6l.whl#sha256=ccd711cccc31d4e49f3d8d88cc5459d7c6c496890a1e651df48a024e1a9675ae (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,751 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.0-cp37-cp37m-linux_armv7l.whl#sha256=ccd711cccc31d4e49f3d8d88cc5459d7c6c496890a1e651df48a024e1a9675ae (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,751 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c2780f924bfbbbf78b23f481945f17f1232cf043138502c8a7242dd9c04310ba (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,751 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c2780f924bfbbbf78b23f481945f17f1232cf043138502c8a7242dd9c04310ba (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,751 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp37-cp37m-linux_armv6l.whl#sha256=09ed6e7a446e5f1d34b68e7af188265e09b6bd4d51dc84c7d0d190a08966fb79 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,751 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp37-cp37m-linux_armv7l.whl#sha256=09ed6e7a446e5f1d34b68e7af188265e09b6bd4d51dc84c7d0d190a08966fb79 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,751 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp39-cp39-linux_armv6l.whl#sha256=4d8967854ad1577550cea92b6474561726648c605f63ab598218f7ee1c21b1ee (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,751 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp39-cp39-linux_armv7l.whl#sha256=4d8967854ad1577550cea92b6474561726648c605f63ab598218f7ee1c21b1ee (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,752 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=d547df152ca5cc919761e6a071515f4e97830ffae817158ec9fa1399382d1761 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,752 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=d547df152ca5cc919761e6a071515f4e97830ffae817158ec9fa1399382d1761 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,752 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.2-py3-none-any.whl#sha256=dcdb892a0910c6bc2935f063bd1cd97567578112fdfd94b0ee3c8153a0ccfa9c (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,752 Skipping link: No binaries permitted for forgi: 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https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,753 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=e96b8376cebbb6f9a9b49d8d88a027e58f790aada95f37814c7cf8fab8f7a606 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,753 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp39-cp39-linux_armv7l.whl#sha256=e96b8376cebbb6f9a9b49d8d88a027e58f790aada95f37814c7cf8fab8f7a606 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,753 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=261b20a637cc9b006dcb9866174c2d3c4cfa0f0375bd1aa38950c8ccd867dcdd (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,753 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=261b20a637cc9b006dcb9866174c2d3c4cfa0f0375bd1aa38950c8ccd867dcdd (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,753 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=5917ef47b38ba9bd489d8299f12812ea7a17d8f10783e0fe4c4f184a2bae3018 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,753 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=5917ef47b38ba9bd489d8299f12812ea7a17d8f10783e0fe4c4f184a2bae3018 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,753 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-1.1-py2.py3-none-any.whl#sha256=a13ed8456dad061d5c5f05609847f58aa713a49993e7923dceadb036dfb92f54 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,754 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-1.0-py2.py3-none-any.whl#sha256=d5f6c5bad4475c9a6820816e07d9c2bea6ee364c9f45ea6214cc55e18513e381 (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,754 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-0.20-py3-none-any.whl#sha256=fe868f38af84d0ed687e6344436930f427f9d154975e10cac9d5ff634a40d16a (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,754 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-0.1-py3-none-any.whl#sha256=74cf37eb8412b8c4a6cc74b32257f5257d71148ad9051c4d9227b689036c1adf (from https://www.piwheels.org/simple/forgi/) 2025-09-05T01:13:15,754 Skipping link: not a file: https://www.piwheels.org/simple/forgi/ 2025-09-05T01:13:15,754 Skipping link: not a file: https://pypi.org/simple/forgi/ 2025-09-05T01:13:15,781 Given no hashes to check 1 links for project 'forgi': discarding no candidates 2025-09-05T01:13:15,782 Collecting forgi==2.1.2 2025-09-05T01:13:15,784 Created temporary directory: /tmp/pip-unpack-xr62vk_3 2025-09-05T01:13:15,946 Downloading forgi-2.1.2.tar.gz (26.8 MB) 2025-09-05T01:13:22,158 Added forgi==2.1.2 from https://files.pythonhosted.org/packages/bb/50/206944d64095dd07960398f5d350a00c96e7f29689c64ae559292ba7cd20/forgi-2.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-rtll8fqd' 2025-09-05T01:13:22,159 Running setup.py (path:/tmp/pip-wheel-_bpcg7ao/forgi_672d3a97a20f454ca8d0d56399658c9b/setup.py) egg_info for package forgi 2025-09-05T01:13:22,160 Created temporary directory: /tmp/pip-pip-egg-info-2hx9v7z3 2025-09-05T01:13:22,160 Preparing metadata (setup.py): started 2025-09-05T01:13:22,161 Running command python setup.py egg_info 2025-09-05T01:13:22,872 fatal: not a git repository (or any parent up to mount point /) 2025-09-05T01:13:22,872 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-05T01:13:27,253 Compiling forgi/threedee/utilities/cytvec.pyx because it changed. 2025-09-05T01:13:27,253 [1/1] Cythonizing forgi/threedee/utilities/cytvec.pyx 2025-09-05T01:13:27,433 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-05T01:13:27,434 !! 2025-09-05T01:13:27,434 ******************************************************************************** 2025-09-05T01:13:27,434 Requirements should be satisfied by a PEP 517 installer. 2025-09-05T01:13:27,434 If you are using pip, you can try `pip install --use-pep517`. 2025-09-05T01:13:27,434 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-05T01:13:27,434 or your builds will no longer be supported. 2025-09-05T01:13:27,434 ******************************************************************************** 2025-09-05T01:13:27,435 !! 2025-09-05T01:13:27,435 dist.fetch_build_eggs(dist.setup_requires) 2025-09-05T01:13:27,857 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-05T01:13:27,857 !! 2025-09-05T01:13:27,857 ******************************************************************************** 2025-09-05T01:13:27,857 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-05T01:13:27,857 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-05T01:13:27,857 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-05T01:13:27,857 ******************************************************************************** 2025-09-05T01:13:27,858 !! 2025-09-05T01:13:27,858 self._finalize_license_expression() 2025-09-05T01:13:27,931 INFO:root:running egg_info 2025-09-05T01:13:28,005 INFO:root:creating /tmp/pip-pip-egg-info-2hx9v7z3/forgi.egg-info 2025-09-05T01:13:28,005 INFO:root:writing /tmp/pip-pip-egg-info-2hx9v7z3/forgi.egg-info/PKG-INFO 2025-09-05T01:13:28,010 INFO:root:writing dependency_links to /tmp/pip-pip-egg-info-2hx9v7z3/forgi.egg-info/dependency_links.txt 2025-09-05T01:13:28,013 INFO:root:writing requirements to /tmp/pip-pip-egg-info-2hx9v7z3/forgi.egg-info/requires.txt 2025-09-05T01:13:28,013 INFO:root:writing top-level names to /tmp/pip-pip-egg-info-2hx9v7z3/forgi.egg-info/top_level.txt 2025-09-05T01:13:28,014 INFO:root:writing manifest file '/tmp/pip-pip-egg-info-2hx9v7z3/forgi.egg-info/SOURCES.txt' 2025-09-05T01:13:28,102 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:13:28,102 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:13:28,102 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:13:28,102 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:13:28,102 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:13:28,251 INFO:root:reading manifest file '/tmp/pip-pip-egg-info-2hx9v7z3/forgi.egg-info/SOURCES.txt' 2025-09-05T01:13:28,251 INFO:root:reading manifest template 'MANIFEST.in' 2025-09-05T01:13:28,263 INFO:root:adding license file 'LICENSE' 2025-09-05T01:13:28,263 INFO:root:adding license file 'CREDITS' 2025-09-05T01:13:28,270 INFO:root:writing manifest file '/tmp/pip-pip-egg-info-2hx9v7z3/forgi.egg-info/SOURCES.txt' 2025-09-05T01:13:28,803 Preparing metadata (setup.py): finished with status 'done' 2025-09-05T01:13:28,808 Source in /tmp/pip-wheel-_bpcg7ao/forgi_672d3a97a20f454ca8d0d56399658c9b has version 2.1.2, which satisfies requirement forgi==2.1.2 from https://files.pythonhosted.org/packages/bb/50/206944d64095dd07960398f5d350a00c96e7f29689c64ae559292ba7cd20/forgi-2.1.2.tar.gz 2025-09-05T01:13:28,808 Removed forgi==2.1.2 from https://files.pythonhosted.org/packages/bb/50/206944d64095dd07960398f5d350a00c96e7f29689c64ae559292ba7cd20/forgi-2.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-rtll8fqd' 2025-09-05T01:13:28,817 Created temporary directory: /tmp/pip-unpack-u744bypv 2025-09-05T01:13:28,818 Created temporary directory: /tmp/pip-unpack-jtn_ed8z 2025-09-05T01:13:28,818 Building wheels for collected packages: forgi 2025-09-05T01:13:28,819 Created temporary directory: /tmp/pip-wheel-1zl5c8_6 2025-09-05T01:13:28,820 DEPRECATION: Building 'forgi' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'forgi'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-05T01:13:28,821 Building wheel for forgi (setup.py): started 2025-09-05T01:13:28,821 Destination directory: /tmp/pip-wheel-1zl5c8_6 2025-09-05T01:13:28,821 Running command python setup.py bdist_wheel 2025-09-05T01:13:29,534 fatal: not a git repository (or any parent up to mount point /) 2025-09-05T01:13:29,534 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-09-05T01:13:30,318 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-05T01:13:30,318 !! 2025-09-05T01:13:30,319 ******************************************************************************** 2025-09-05T01:13:30,319 Requirements should be satisfied by a PEP 517 installer. 2025-09-05T01:13:30,319 If you are using pip, you can try `pip install --use-pep517`. 2025-09-05T01:13:30,319 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-05T01:13:30,319 or your builds will no longer be supported. 2025-09-05T01:13:30,319 ******************************************************************************** 2025-09-05T01:13:30,319 !! 2025-09-05T01:13:30,319 dist.fetch_build_eggs(dist.setup_requires) 2025-09-05T01:13:30,740 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-05T01:13:30,740 !! 2025-09-05T01:13:30,740 ******************************************************************************** 2025-09-05T01:13:30,740 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-05T01:13:30,740 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-05T01:13:30,740 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-05T01:13:30,741 ******************************************************************************** 2025-09-05T01:13:30,741 !! 2025-09-05T01:13:30,741 self._finalize_license_expression() 2025-09-05T01:13:30,741 INFO:root:running bdist_wheel 2025-09-05T01:13:31,037 INFO:root:running build 2025-09-05T01:13:31,037 INFO:root:running build_py 2025-09-05T01:13:31,038 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi 2025-09-05T01:13:31,039 INFO:root:copying forgi/whitelist.py -> build/lib.linux-armv7l-cpython-313/forgi 2025-09-05T01:13:31,039 INFO:root:copying forgi/config.py -> build/lib.linux-armv7l-cpython-313/forgi 2025-09-05T01:13:31,040 INFO:root:copying forgi/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi 2025-09-05T01:13:31,041 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/graph 2025-09-05T01:13:31,041 INFO:root:copying forgi/graph/transform_graphs.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-09-05T01:13:31,042 INFO:root:copying forgi/graph/sequence.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-09-05T01:13:31,042 INFO:root:copying forgi/graph/residue.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-09-05T01:13:31,043 INFO:root:copying forgi/graph/bulge_graph.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-09-05T01:13:31,044 INFO:root:copying forgi/graph/_graph_construction.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-09-05T01:13:31,044 INFO:root:copying forgi/graph/_cofold.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-09-05T01:13:31,045 INFO:root:copying forgi/graph/_basegraph.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-09-05T01:13:31,045 INFO:root:copying forgi/graph/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-09-05T01:13:31,046 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee 2025-09-05T01:13:31,046 INFO:root:copying forgi/threedee/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee 2025-09-05T01:13:31,047 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,047 INFO:root:copying forgi/threedee/model/transform_cg.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,048 INFO:root:copying forgi/threedee/model/stats.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,049 INFO:root:copying forgi/threedee/model/similarity.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,049 INFO:root:copying forgi/threedee/model/linecloud.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,050 INFO:root:copying forgi/threedee/model/descriptors.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,050 INFO:root:copying forgi/threedee/model/coarse_grain.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,051 INFO:root:copying forgi/threedee/model/_ensemble2.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,052 INFO:root:copying forgi/threedee/model/_ensemble.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,052 INFO:root:copying forgi/threedee/model/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-09-05T01:13:31,053 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,053 INFO:root:copying forgi/utilities/stuff.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,054 INFO:root:copying forgi/utilities/observedDict.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,055 INFO:root:copying forgi/utilities/numbered_dotbracket.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,055 INFO:root:copying forgi/utilities/graph.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,056 INFO:root:copying forgi/utilities/exceptions.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,056 INFO:root:copying forgi/utilities/debug.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,056 INFO:root:copying forgi/utilities/containers.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,057 INFO:root:copying forgi/utilities/commandline_utils.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,058 INFO:root:copying forgi/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-09-05T01:13:31,058 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,059 INFO:root:copying forgi/threedee/utilities/virtual_residues.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,059 INFO:root:copying forgi/threedee/utilities/vector.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,060 INFO:root:copying forgi/threedee/utilities/pdb.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,061 INFO:root:copying forgi/threedee/utilities/my_math.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,061 INFO:root:copying forgi/threedee/utilities/modified_res_lookup.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,062 INFO:root:copying forgi/threedee/utilities/modified_res.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,063 INFO:root:copying forgi/threedee/utilities/mcannotate.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,063 INFO:root:copying forgi/threedee/utilities/graph_pdb.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,064 INFO:root:copying forgi/threedee/utilities/average_stem_vres_atom_positions.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,064 INFO:root:copying forgi/threedee/utilities/_dssr.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,065 INFO:root:copying forgi/threedee/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,066 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/classification 2025-09-05T01:13:31,066 INFO:root:copying forgi/threedee/classification/contact.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification 2025-09-05T01:13:31,067 INFO:root:copying forgi/threedee/classification/aminor.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification 2025-09-05T01:13:31,067 INFO:root:copying forgi/threedee/classification/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification 2025-09-05T01:13:31,068 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-09-05T01:13:31,068 INFO:root:copying forgi/threedee/classification/_training/train_aminor.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-09-05T01:13:31,069 INFO:root:copying forgi/threedee/classification/_training/aminor_training.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-09-05T01:13:31,069 INFO:root:copying forgi/threedee/classification/_training/_parse_utils.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-09-05T01:13:31,070 INFO:root:copying forgi/threedee/classification/_training/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-09-05T01:13:31,071 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-09-05T01:13:31,071 INFO:root:copying forgi/_k2n_standalone/rna2d.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-09-05T01:13:31,071 INFO:root:copying forgi/_k2n_standalone/output.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-09-05T01:13:31,072 INFO:root:copying forgi/_k2n_standalone/knotted2nested.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-09-05T01:13:31,072 INFO:root:copying forgi/_k2n_standalone/knots.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-09-05T01:13:31,073 INFO:root:copying forgi/_k2n_standalone/dict2d.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-09-05T01:13:31,074 INFO:root:copying forgi/_k2n_standalone/ct_simple.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-09-05T01:13:31,074 INFO:root:copying forgi/_k2n_standalone/bpseq.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-09-05T01:13:31,075 INFO:root:copying forgi/_k2n_standalone/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-09-05T01:13:31,076 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/visual 2025-09-05T01:13:31,076 INFO:root:copying forgi/threedee/visual/pymol.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/visual 2025-09-05T01:13:31,076 INFO:root:copying forgi/threedee/visual/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/visual 2025-09-05T01:13:31,077 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/visual 2025-09-05T01:13:31,077 INFO:root:copying forgi/visual/mplotlib.py -> build/lib.linux-armv7l-cpython-313/forgi/visual 2025-09-05T01:13:31,078 INFO:root:copying forgi/visual/fornac.py -> build/lib.linux-armv7l-cpython-313/forgi/visual 2025-09-05T01:13:31,078 INFO:root:copying forgi/visual/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/visual 2025-09-05T01:13:31,079 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/projection 2025-09-05T01:13:31,079 INFO:root:copying forgi/projection/projection2d.py -> build/lib.linux-armv7l-cpython-313/forgi/projection 2025-09-05T01:13:31,080 INFO:root:copying forgi/projection/hausdorff.py -> build/lib.linux-armv7l-cpython-313/forgi/projection 2025-09-05T01:13:31,081 INFO:root:copying forgi/projection/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/projection 2025-09-05T01:13:31,089 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,089 INFO:root:copying forgi/threedee/data/ideal_1_9_10_18.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,090 INFO:root:copying forgi/threedee/data/ideal_1_9_10_18.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,090 INFO:root:copying forgi/threedee/data/ideal_1_8_9_16.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,091 INFO:root:copying forgi/threedee/data/ideal_1_8_9_16.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,092 INFO:root:copying forgi/threedee/data/ideal_1_7_8_14.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,092 INFO:root:copying forgi/threedee/data/ideal_1_7_8_14.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,093 INFO:root:copying forgi/threedee/data/ideal_1_6_7_12.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,093 INFO:root:copying forgi/threedee/data/ideal_1_6_7_12.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,094 INFO:root:copying forgi/threedee/data/ideal_1_5_6_10.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,094 INFO:root:copying forgi/threedee/data/ideal_1_5_6_10.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,095 INFO:root:copying forgi/threedee/data/ideal_1_4_5_8.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,095 INFO:root:copying forgi/threedee/data/ideal_1_4_5_8.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,096 INFO:root:copying forgi/threedee/data/ideal_1_40_41_80.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,097 INFO:root:copying forgi/threedee/data/ideal_1_40_41_80.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,098 INFO:root:copying forgi/threedee/data/ideal_1_3_4_6.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,098 INFO:root:copying forgi/threedee/data/ideal_1_3_4_6.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,099 INFO:root:copying forgi/threedee/data/ideal_1_39_40_78.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,099 INFO:root:copying forgi/threedee/data/ideal_1_39_40_78.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,100 INFO:root:copying forgi/threedee/data/ideal_1_38_39_76.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,101 INFO:root:copying forgi/threedee/data/ideal_1_38_39_76.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,102 INFO:root:copying forgi/threedee/data/ideal_1_37_38_74.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,103 INFO:root:copying forgi/threedee/data/ideal_1_37_38_74.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,104 INFO:root:copying forgi/threedee/data/ideal_1_36_37_72.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,104 INFO:root:copying forgi/threedee/data/ideal_1_36_37_72.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,105 INFO:root:copying forgi/threedee/data/ideal_1_35_36_70.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,106 INFO:root:copying forgi/threedee/data/ideal_1_35_36_70.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,107 INFO:root:copying forgi/threedee/data/ideal_1_34_35_68.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,108 INFO:root:copying forgi/threedee/data/ideal_1_34_35_68.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,109 INFO:root:copying forgi/threedee/data/ideal_1_33_34_66.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,109 INFO:root:copying forgi/threedee/data/ideal_1_33_34_66.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,110 INFO:root:copying forgi/threedee/data/ideal_1_32_33_64.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,111 INFO:root:copying forgi/threedee/data/ideal_1_32_33_64.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,112 INFO:root:copying forgi/threedee/data/ideal_1_31_32_62.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,112 INFO:root:copying forgi/threedee/data/ideal_1_31_32_62.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,113 INFO:root:copying forgi/threedee/data/ideal_1_30_31_60.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,114 INFO:root:copying forgi/threedee/data/ideal_1_30_31_60.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,115 INFO:root:copying forgi/threedee/data/ideal_1_2_3_4.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,115 INFO:root:copying forgi/threedee/data/ideal_1_2_3_4.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,116 INFO:root:copying forgi/threedee/data/ideal_1_29_30_58.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,117 INFO:root:copying forgi/threedee/data/ideal_1_29_30_58.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,117 INFO:root:copying forgi/threedee/data/ideal_1_28_29_56.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,118 INFO:root:copying forgi/threedee/data/ideal_1_28_29_56.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,119 INFO:root:copying forgi/threedee/data/ideal_1_27_28_54.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,120 INFO:root:copying forgi/threedee/data/ideal_1_27_28_54.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,120 INFO:root:copying forgi/threedee/data/ideal_1_26_27_52.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,121 INFO:root:copying forgi/threedee/data/ideal_1_26_27_52.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,122 INFO:root:copying forgi/threedee/data/ideal_1_25_26_50.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,122 INFO:root:copying forgi/threedee/data/ideal_1_25_26_50.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,123 INFO:root:copying forgi/threedee/data/ideal_1_24_25_48.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,124 INFO:root:copying forgi/threedee/data/ideal_1_24_25_48.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,125 INFO:root:copying forgi/threedee/data/ideal_1_23_24_46.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,125 INFO:root:copying forgi/threedee/data/ideal_1_23_24_46.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,126 INFO:root:copying forgi/threedee/data/ideal_1_22_23_44.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,127 INFO:root:copying forgi/threedee/data/ideal_1_22_23_44.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,127 INFO:root:copying forgi/threedee/data/ideal_1_21_22_42.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,128 INFO:root:copying forgi/threedee/data/ideal_1_21_22_42.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,129 INFO:root:copying forgi/threedee/data/ideal_1_20_21_40.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,129 INFO:root:copying forgi/threedee/data/ideal_1_20_21_40.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,130 INFO:root:copying forgi/threedee/data/ideal_1_1_2_2.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,131 INFO:root:copying forgi/threedee/data/ideal_1_1_2_2.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,131 INFO:root:copying forgi/threedee/data/ideal_1_19_20_38.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,132 INFO:root:copying forgi/threedee/data/ideal_1_19_20_38.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,132 INFO:root:copying forgi/threedee/data/ideal_1_18_19_36.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,133 INFO:root:copying forgi/threedee/data/ideal_1_18_19_36.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,134 INFO:root:copying forgi/threedee/data/ideal_1_17_18_34.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,134 INFO:root:copying forgi/threedee/data/ideal_1_17_18_34.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,135 INFO:root:copying forgi/threedee/data/ideal_1_16_17_32.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,136 INFO:root:copying forgi/threedee/data/ideal_1_16_17_32.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,136 INFO:root:copying forgi/threedee/data/ideal_1_15_16_30.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,137 INFO:root:copying forgi/threedee/data/ideal_1_15_16_30.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,138 INFO:root:copying forgi/threedee/data/ideal_1_14_15_28.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,138 INFO:root:copying forgi/threedee/data/ideal_1_14_15_28.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,139 INFO:root:copying forgi/threedee/data/ideal_1_13_14_26.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,139 INFO:root:copying forgi/threedee/data/ideal_1_13_14_26.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,140 INFO:root:copying forgi/threedee/data/ideal_1_12_13_24.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,141 INFO:root:copying forgi/threedee/data/ideal_1_12_13_24.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,141 INFO:root:copying forgi/threedee/data/ideal_1_11_12_22.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,142 INFO:root:copying forgi/threedee/data/ideal_1_11_12_22.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,143 INFO:root:copying forgi/threedee/data/ideal_1_10_11_20.spqr.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,143 INFO:root:copying forgi/threedee/data/ideal_1_10_11_20.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,144 INFO:root:copying forgi/threedee/data/average_atom_positions.json -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,405 INFO:root:copying forgi/threedee/data/aminor_geometries.csv -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,487 INFO:root:copying forgi/threedee/data/aminor_params.json -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-09-05T01:13:31,491 INFO:root:running build_ext 2025-09-05T01:13:31,498 INFO:root:building 'forgi.threedee.utilities.cytvec' extension 2025-09-05T01:13:31,499 INFO:root:creating build/temp.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-09-05T01:13:31,500 INFO:root:arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iforgi/threedee/utilities -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c forgi/threedee/utilities/broken_ml_core.cpp -o build/temp.linux-armv7l-cpython-313/forgi/threedee/utilities/broken_ml_core.o -O3 -std=c++11 2025-09-05T01:13:33,168 INFO:root:arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iforgi/threedee/utilities -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c forgi/threedee/utilities/cytvec.cpp -o build/temp.linux-armv7l-cpython-313/forgi/threedee/utilities/cytvec.o -O3 -std=c++11 2025-09-05T01:14:03,995 INFO:root:arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/forgi/threedee/utilities/broken_ml_core.o build/temp.linux-armv7l-cpython-313/forgi/threedee/utilities/cytvec.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities/cytvec.cpython-313-arm-linux-gnueabihf.so 2025-09-05T01:14:04,310 INFO:root:running build_scripts 2025-09-05T01:14:04,310 INFO:root:creating build/scripts-3.13 2025-09-05T01:14:04,311 INFO:root:copying and adjusting examples/rnaConvert.py -> build/scripts-3.13 2025-09-05T01:14:04,311 INFO:root:copying and adjusting examples/describe_cg.py -> build/scripts-3.13 2025-09-05T01:14:04,312 INFO:root:copying and adjusting examples/compare_RNA.py -> build/scripts-3.13 2025-09-05T01:14:04,313 INFO:root:copying and adjusting examples/visualize_rna.py -> build/scripts-3.13 2025-09-05T01:14:04,314 INFO:root:copying and adjusting examples/pseudoknot_analyzer.py -> build/scripts-3.13 2025-09-05T01:14:04,315 INFO:root:copying and adjusting examples/forgi_config.py -> build/scripts-3.13 2025-09-05T01:14:04,315 INFO:root:changing mode of build/scripts-3.13/rnaConvert.py from 644 to 755 2025-09-05T01:14:04,315 INFO:root:changing mode of build/scripts-3.13/describe_cg.py from 644 to 755 2025-09-05T01:14:04,315 INFO:root:changing mode of build/scripts-3.13/compare_RNA.py from 644 to 755 2025-09-05T01:14:04,315 INFO:root:changing mode of build/scripts-3.13/visualize_rna.py from 644 to 755 2025-09-05T01:14:04,315 INFO:root:changing mode of build/scripts-3.13/pseudoknot_analyzer.py from 644 to 755 2025-09-05T01:14:04,315 INFO:root:changing mode of build/scripts-3.13/forgi_config.py from 644 to 755 2025-09-05T01:14:04,391 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-05T01:14:04,391 !! 2025-09-05T01:14:04,391 ******************************************************************************** 2025-09-05T01:14:04,392 Please avoid running ``setup.py`` directly. 2025-09-05T01:14:04,392 Instead, use pypa/build, pypa/installer or other 2025-09-05T01:14:04,392 standards-based tools. 2025-09-05T01:14:04,392 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-05T01:14:04,392 or your builds will no longer be supported. 2025-09-05T01:14:04,392 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-05T01:14:04,392 ******************************************************************************** 2025-09-05T01:14:04,392 !! 2025-09-05T01:14:04,393 self.initialize_options() 2025-09-05T01:14:04,465 INFO:root:installing to build/bdist.linux-armv7l/wheel 2025-09-05T01:14:04,465 INFO:root:running install 2025-09-05T01:14:04,487 INFO:root:running install_lib 2025-09-05T01:14:04,562 INFO:root:creating build/bdist.linux-armv7l/wheel 2025-09-05T01:14:04,562 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi 2025-09-05T01:14:04,563 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/projection 2025-09-05T01:14:04,563 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/projection/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/projection 2025-09-05T01:14:04,563 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/projection/hausdorff.py -> build/bdist.linux-armv7l/wheel/./forgi/projection 2025-09-05T01:14:04,564 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/projection/projection2d.py -> build/bdist.linux-armv7l/wheel/./forgi/projection 2025-09-05T01:14:04,565 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/visual 2025-09-05T01:14:04,565 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/visual/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/visual 2025-09-05T01:14:04,565 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/visual/fornac.py -> build/bdist.linux-armv7l/wheel/./forgi/visual 2025-09-05T01:14:04,566 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/visual/mplotlib.py -> build/bdist.linux-armv7l/wheel/./forgi/visual 2025-09-05T01:14:04,566 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone 2025-09-05T01:14:04,567 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-09-05T01:14:04,567 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone/bpseq.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-09-05T01:14:04,567 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone/ct_simple.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-09-05T01:14:04,568 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone/dict2d.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-09-05T01:14:04,568 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone/knots.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-09-05T01:14:04,569 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone/knotted2nested.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-09-05T01:14:04,569 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone/output.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-09-05T01:14:04,570 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone/rna2d.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-09-05T01:14:04,570 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/utilities 2025-09-05T01:14:04,571 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-09-05T01:14:04,571 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/utilities/commandline_utils.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-09-05T01:14:04,571 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/utilities/containers.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-09-05T01:14:04,572 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/utilities/debug.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-09-05T01:14:04,572 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/utilities/exceptions.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-09-05T01:14:04,572 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/utilities/graph.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-09-05T01:14:04,573 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/utilities/numbered_dotbracket.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-09-05T01:14:04,573 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/utilities/observedDict.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-09-05T01:14:04,574 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/utilities/stuff.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-09-05T01:14:04,574 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee 2025-09-05T01:14:04,575 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee/data 2025-09-05T01:14:04,575 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/aminor_params.json -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,575 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/aminor_geometries.csv -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,657 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/average_atom_positions.json -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,918 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_10_11_20.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,918 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_10_11_20.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,919 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_11_12_22.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,919 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_11_12_22.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,920 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_12_13_24.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,920 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_12_13_24.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,921 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_13_14_26.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,921 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_13_14_26.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,922 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_14_15_28.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,922 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_14_15_28.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,923 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_15_16_30.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,923 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_15_16_30.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,924 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_16_17_32.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,924 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_16_17_32.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,925 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_17_18_34.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,925 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_17_18_34.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,926 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_18_19_36.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,926 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_18_19_36.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,927 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_19_20_38.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,927 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_19_20_38.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,928 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_1_2_2.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,928 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_1_2_2.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,928 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_20_21_40.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,929 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_20_21_40.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,929 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_21_22_42.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,930 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_21_22_42.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,930 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_22_23_44.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,931 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_22_23_44.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,932 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_23_24_46.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,932 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_23_24_46.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,933 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_24_25_48.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,933 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_24_25_48.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,934 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_25_26_50.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,934 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_25_26_50.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,935 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_26_27_52.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,935 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_26_27_52.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,936 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_27_28_54.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,937 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_27_28_54.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,937 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_28_29_56.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,938 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_28_29_56.spqr.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,938 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_29_30_58.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-09-05T01:14:04,939 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/data/ideal_1_29_30_58.spqr.pdb -> 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build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-09-05T01:14:04,979 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/model/coarse_grain.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-09-05T01:14:04,979 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/model/descriptors.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-09-05T01:14:04,980 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/model/linecloud.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-09-05T01:14:04,980 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/model/similarity.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-09-05T01:14:04,981 INFO:root:copying build/lib.linux-armv7l-cpython-313/forgi/threedee/model/stats.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-09-05T01:14:04,981 INFO:root:copying 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build/bdist.linux-armv7l/wheel/./forgi 2025-09-05T01:14:04,987 INFO:root:running install_data 2025-09-05T01:14:05,061 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi-2.1.2.data/data 2025-09-05T01:14:05,062 INFO:root:copying CREDITS -> build/bdist.linux-armv7l/wheel/forgi-2.1.2.data/data/. 2025-09-05T01:14:05,062 INFO:root:copying LICENSE -> build/bdist.linux-armv7l/wheel/forgi-2.1.2.data/data/. 2025-09-05T01:14:05,063 INFO:root:running install_egg_info 2025-09-05T01:14:05,138 INFO:root:running egg_info 2025-09-05T01:14:05,212 INFO:root:writing forgi.egg-info/PKG-INFO 2025-09-05T01:14:05,217 INFO:root:writing dependency_links to forgi.egg-info/dependency_links.txt 2025-09-05T01:14:05,220 INFO:root:writing requirements to forgi.egg-info/requires.txt 2025-09-05T01:14:05,220 INFO:root:writing top-level names to forgi.egg-info/top_level.txt 2025-09-05T01:14:05,233 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:14:05,233 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:14:05,233 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:14:05,233 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:14:05,233 INFO:root:dependency /usr/local/lib/python3.13/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-09-05T01:14:05,308 INFO:root:reading manifest file 'forgi.egg-info/SOURCES.txt' 2025-09-05T01:14:05,317 INFO:root:reading 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