2025-09-06T06:18:17,672 Created temporary directory: /tmp/pip-build-tracker-3oj9o6wj 2025-09-06T06:18:17,673 Initialized build tracking at /tmp/pip-build-tracker-3oj9o6wj 2025-09-06T06:18:17,673 Created build tracker: /tmp/pip-build-tracker-3oj9o6wj 2025-09-06T06:18:17,673 Entered build tracker: /tmp/pip-build-tracker-3oj9o6wj 2025-09-06T06:18:17,674 Created temporary directory: /tmp/pip-wheel-rigzvd5b 2025-09-06T06:18:17,677 Created temporary directory: /tmp/pip-ephem-wheel-cache-3ogyf88n 2025-09-06T06:18:17,740 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-06T06:18:17,742 2 location(s) to search for versions of kssdutils: 2025-09-06T06:18:17,742 * https://pypi.org/simple/kssdutils/ 2025-09-06T06:18:17,742 * https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:18:17,742 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2025-09-06T06:18:17,743 Getting page https://pypi.org/simple/kssdutils/ 2025-09-06T06:18:17,744 Found index url https://pypi.org/simple/ 2025-09-06T06:18:17,814 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2025-09-06T06:18:17,816 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2025-09-06T06:18:17,817 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2025-09-06T06:18:17,817 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2025-09-06T06:18:17,817 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2025-09-06T06:18:17,817 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2025-09-06T06:18:17,818 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2025-09-06T06:18:17,818 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2025-09-06T06:18:17,818 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2025-09-06T06:18:17,818 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2025-09-06T06:18:17,818 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2025-09-06T06:18:17,819 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2025-09-06T06:18:17,819 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2025-09-06T06:18:17,819 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:18:17,819 Getting page https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:18:17,820 Found index url https://www.piwheels.org/simple/ 2025-09-06T06:18:17,908 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2025-09-06T06:18:17,917 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,917 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,917 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,917 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,917 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,918 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,918 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,918 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,918 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,918 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,918 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,919 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,919 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,919 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,919 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,919 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,920 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,920 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,920 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,920 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,920 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,921 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,921 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,921 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,921 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,921 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,921 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,922 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,922 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,922 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,922 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,922 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,922 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,922 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:18:17,923 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:18:17,923 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2025-09-06T06:18:17,946 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2025-09-06T06:18:17,947 Collecting kssdutils==1.0.5 2025-09-06T06:18:17,949 Created temporary directory: /tmp/pip-unpack-2jl028ko 2025-09-06T06:18:18,086 Downloading kssdutils-1.0.5.tar.gz (44 kB) 2025-09-06T06:18:18,133 Added kssdutils==1.0.5 from https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-3oj9o6wj' 2025-09-06T06:18:18,135 Running setup.py (path:/tmp/pip-wheel-rigzvd5b/kssdutils_7c743c2c195a4ca5b001e6fda5e6353f/setup.py) egg_info for package kssdutils 2025-09-06T06:18:18,135 Created temporary directory: /tmp/pip-pip-egg-info-8r_fr0cr 2025-09-06T06:18:18,135 Preparing metadata (setup.py): started 2025-09-06T06:18:18,136 Running command python setup.py egg_info 2025-09-06T06:18:19,400 running egg_info 2025-09-06T06:18:19,475 creating /tmp/pip-pip-egg-info-8r_fr0cr/kssdutils.egg-info 2025-09-06T06:18:19,476 writing /tmp/pip-pip-egg-info-8r_fr0cr/kssdutils.egg-info/PKG-INFO 2025-09-06T06:18:19,477 writing dependency_links to /tmp/pip-pip-egg-info-8r_fr0cr/kssdutils.egg-info/dependency_links.txt 2025-09-06T06:18:19,477 writing top-level names to /tmp/pip-pip-egg-info-8r_fr0cr/kssdutils.egg-info/top_level.txt 2025-09-06T06:18:19,478 writing manifest file '/tmp/pip-pip-egg-info-8r_fr0cr/kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:18:19,768 reading manifest file '/tmp/pip-pip-egg-info-8r_fr0cr/kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:18:19,768 reading manifest template 'MANIFEST.in' 2025-09-06T06:18:19,772 writing manifest file '/tmp/pip-pip-egg-info-8r_fr0cr/kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:18:19,884 Preparing metadata (setup.py): finished with status 'done' 2025-09-06T06:18:19,889 Source in /tmp/pip-wheel-rigzvd5b/kssdutils_7c743c2c195a4ca5b001e6fda5e6353f has version 1.0.5, which satisfies requirement kssdutils==1.0.5 from https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz 2025-09-06T06:18:19,889 Removed kssdutils==1.0.5 from https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-3oj9o6wj' 2025-09-06T06:18:19,892 Created temporary directory: /tmp/pip-unpack-00cm46_3 2025-09-06T06:18:19,892 Created temporary directory: /tmp/pip-unpack-1z4tulh9 2025-09-06T06:18:19,892 Building wheels for collected packages: kssdutils 2025-09-06T06:18:19,894 Created temporary directory: /tmp/pip-wheel-v8nyv3h5 2025-09-06T06:18:19,894 DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-06T06:18:19,895 Building wheel for kssdutils (setup.py): started 2025-09-06T06:18:19,896 Destination directory: /tmp/pip-wheel-v8nyv3h5 2025-09-06T06:18:19,896 Running command python setup.py bdist_wheel 2025-09-06T06:18:20,942 running bdist_wheel 2025-09-06T06:18:21,296 running build 2025-09-06T06:18:21,296 running build_py 2025-09-06T06:18:21,369 creating build/lib.linux-armv7l-cpython-313 2025-09-06T06:18:21,369 copying kssdutils.py -> build/lib.linux-armv7l-cpython-313 2025-09-06T06:18:21,370 running egg_info 2025-09-06T06:18:21,440 writing kssdutils.egg-info/PKG-INFO 2025-09-06T06:18:21,441 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2025-09-06T06:18:21,441 writing top-level names to kssdutils.egg-info/top_level.txt 2025-09-06T06:18:21,514 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:18:21,516 reading manifest template 'MANIFEST.in' 2025-09-06T06:18:21,521 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:18:21,521 running build_ext 2025-09-06T06:18:21,858 building 'kssdtool' extension 2025-09-06T06:18:21,860 creating build/temp.linux-armv7l-cpython-313 2025-09-06T06:18:21,861 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-09-06T06:18:22,031 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-06T06:18:22,031 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-06T06:18:22,032 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-06T06:18:22,032 | ^ 2025-09-06T06:18:22,035 co2mco.c: In function ‘co2unitllmco’: 2025-09-06T06:18:22,035 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-06T06:18:22,035 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-06T06:18:22,035 | ^ 2025-09-06T06:18:22,715 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-09-06T06:18:23,097 command_composite.c: In function ‘get_species_abundance’: 2025-09-06T06:18:23,097 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-06T06:18:23,097 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-06T06:18:23,097 | ^~ 2025-09-06T06:18:23,097 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-06T06:18:23,098 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-06T06:18:23,098 | ^~ 2025-09-06T06:18:23,098 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:23,098 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-06T06:18:23,098 | ^ 2025-09-06T06:18:23,098 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:23,098 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-06T06:18:23,098 | ^~~~~~~~~~ 2025-09-06T06:18:23,098 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:18:23,098 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-06T06:18:23,099 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,099 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:23,099 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-06T06:18:23,099 | ^ 2025-09-06T06:18:23,099 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:23,099 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-06T06:18:23,099 | ^~~~~~~~~~ 2025-09-06T06:18:23,099 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:18:23,099 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-06T06:18:23,099 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,100 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:23,100 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:18:23,100 | ^ 2025-09-06T06:18:23,100 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:23,100 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:18:23,100 | ^~~~~~~~~~ 2025-09-06T06:18:23,100 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:18:23,100 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:18:23,100 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,100 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:23,100 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-06T06:18:23,101 | ^ 2025-09-06T06:18:23,101 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:23,101 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-06T06:18:23,101 | ^~~~~~~~~~ 2025-09-06T06:18:23,101 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:18:23,101 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-06T06:18:23,101 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,101 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:23,101 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:18:23,102 | ^ 2025-09-06T06:18:23,102 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:23,102 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:18:23,102 | ^~~~~~~~~~~~ 2025-09-06T06:18:23,102 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-09-06T06:18:23,102 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:18:23,102 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,351 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-09-06T06:18:23,577 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-06T06:18:23,579 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:18:23,579 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:18:23,579 | ~~^ 2025-09-06T06:18:23,579 | | 2025-09-06T06:18:23,579 | long unsigned int 2025-09-06T06:18:23,579 | %u 2025-09-06T06:18:23,579 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:18:23,580 | ~~~~~~~ 2025-09-06T06:18:23,580 | | 2025-09-06T06:18:23,580 | size_t {aka unsigned int} 2025-09-06T06:18:23,581 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:18:23,582 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:18:23,582 | ~~^ 2025-09-06T06:18:23,582 | | 2025-09-06T06:18:23,582 | long unsigned int 2025-09-06T06:18:23,582 | %u 2025-09-06T06:18:23,582 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:18:23,582 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:18:23,582 | ~~~~~~~~~ 2025-09-06T06:18:23,582 | | 2025-09-06T06:18:23,582 | size_t {aka unsigned int} 2025-09-06T06:18:23,583 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-06T06:18:23,583 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:18:23,584 | ~~^ 2025-09-06T06:18:23,584 | | 2025-09-06T06:18:23,584 | long unsigned int 2025-09-06T06:18:23,584 | %u 2025-09-06T06:18:23,584 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:18:23,584 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:18:23,584 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,584 | | 2025-09-06T06:18:23,584 | unsigned int 2025-09-06T06:18:23,587 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-06T06:18:23,587 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-06T06:18:23,587 | ^ 2025-09-06T06:18:23,594 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-06T06:18:23,596 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:18:23,596 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-06T06:18:23,596 | ~~^ ~~~~~~~ 2025-09-06T06:18:23,596 | | | 2025-09-06T06:18:23,596 | long unsigned int size_t {aka unsigned int} 2025-09-06T06:18:23,596 | %u 2025-09-06T06:18:23,598 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:18:23,598 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-06T06:18:23,599 | ~~^ 2025-09-06T06:18:23,599 | | 2025-09-06T06:18:23,599 | long unsigned int 2025-09-06T06:18:23,599 | %u 2025-09-06T06:18:23,599 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-06T06:18:23,599 | ~~~~~~~~~ 2025-09-06T06:18:23,599 | | 2025-09-06T06:18:23,599 | size_t {aka unsigned int} 2025-09-06T06:18:23,601 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-06T06:18:23,601 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-06T06:18:23,601 | ~~^ 2025-09-06T06:18:23,601 | | 2025-09-06T06:18:23,601 | long unsigned int 2025-09-06T06:18:23,601 | %u 2025-09-06T06:18:23,602 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-06T06:18:23,602 865 | (size_t) b * unitsz_distf_mapped); 2025-09-06T06:18:23,602 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,602 | | 2025-09-06T06:18:23,602 | unsigned int 2025-09-06T06:18:23,604 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-06T06:18:23,604 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-06T06:18:23,604 | ^~~~~~~ 2025-09-06T06:18:23,605 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-06T06:18:23,605 809 | struct stat cbd_fcode_stat; 2025-09-06T06:18:23,605 | ^~~~~~~~~~~~~~ 2025-09-06T06:18:23,606 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-06T06:18:23,606 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-06T06:18:23,606 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,607 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-06T06:18:23,607 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-06T06:18:23,607 | ^~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,613 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-06T06:18:23,616 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:18:23,616 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:18:23,616 | ~~^ 2025-09-06T06:18:23,616 | | 2025-09-06T06:18:23,616 | long unsigned int 2025-09-06T06:18:23,616 | %u 2025-09-06T06:18:23,616 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:18:23,616 | ~~~~~~~ 2025-09-06T06:18:23,616 | | 2025-09-06T06:18:23,617 | size_t {aka unsigned int} 2025-09-06T06:18:23,619 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:18:23,619 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:18:23,619 | ~~^ 2025-09-06T06:18:23,619 | | 2025-09-06T06:18:23,619 | long unsigned int 2025-09-06T06:18:23,619 | %u 2025-09-06T06:18:23,619 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:18:23,619 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:18:23,619 | ~~~~~~~~~ 2025-09-06T06:18:23,620 | | 2025-09-06T06:18:23,620 | size_t {aka unsigned int} 2025-09-06T06:18:23,622 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-06T06:18:23,622 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:18:23,622 | ~~^ 2025-09-06T06:18:23,622 | | 2025-09-06T06:18:23,622 | long unsigned int 2025-09-06T06:18:23,622 | %u 2025-09-06T06:18:23,622 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:18:23,622 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:18:23,622 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:23,622 | | 2025-09-06T06:18:23,623 | unsigned int 2025-09-06T06:18:23,627 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-06T06:18:23,628 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-06T06:18:23,628 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-06T06:18:23,629 | ^ 2025-09-06T06:18:23,630 command_dist.c: In function ‘fname_dist_print’: 2025-09-06T06:18:23,631 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-09-06T06:18:23,631 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-09-06T06:18:23,631 | ^ 2025-09-06T06:18:23,636 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-06T06:18:23,637 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:18:23,638 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-06T06:18:23,638 | ^ 2025-09-06T06:18:23,640 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:18:23,640 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-06T06:18:23,640 | ^ 2025-09-06T06:18:23,646 command_dist.c: In function ‘dist_print_nobin’: 2025-09-06T06:18:23,647 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:18:23,647 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-06T06:18:23,648 | ^ 2025-09-06T06:18:23,650 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:18:23,651 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-06T06:18:23,651 | ^ 2025-09-06T06:18:23,653 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:18:23,653 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-06T06:18:23,653 | ^ 2025-09-06T06:18:24,041 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-06T06:18:24,042 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-06T06:18:24,042 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-06T06:18:24,042 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:24,042 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-06T06:18:24,042 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-06T06:18:24,042 | ^~~~~~~~~~~~ 2025-09-06T06:18:24,851 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-06T06:18:24,851 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-06T06:18:24,852 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-06T06:18:24,852 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:24,852 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-06T06:18:24,852 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-06T06:18:24,852 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:25,770 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-06T06:18:25,771 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:25,771 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:18:25,771 | ^~ ~~~~~~~~~ 2025-09-06T06:18:25,772 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-06T06:18:25,772 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:18:25,772 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:25,773 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:18:25,773 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:18:25,773 | ^~~~~~~~~~~~~~~ 2025-09-06T06:18:25,774 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-06T06:18:25,774 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:18:25,774 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:25,776 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:18:25,776 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:18:25,776 | ^~~~~~~~~~~ 2025-09-06T06:18:25,777 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:25,777 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:18:25,777 | ^~~~~~~~~~~~~~~~~ 2025-09-06T06:18:25,778 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-06T06:18:25,778 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:18:25,778 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:25,779 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:18:25,779 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:18:25,779 | ^~~~~ 2025-09-06T06:18:25,780 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:25,780 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:18:25,780 | ^~~~~~~~~~~ 2025-09-06T06:18:25,780 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:18:25,781 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:18:25,781 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,029 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-06T06:18:26,030 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:26,030 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:18:26,030 | ^~ ~~~~~~~~~ 2025-09-06T06:18:26,031 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-06T06:18:26,031 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:18:26,031 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,033 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:18:26,033 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:18:26,033 | ^~~~~~~~~~~~~~~ 2025-09-06T06:18:26,034 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-06T06:18:26,034 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:18:26,034 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,035 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:18:26,035 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:18:26,035 | ^~~~~~~~~~~~~ 2025-09-06T06:18:26,036 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-06T06:18:26,036 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:18:26,036 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,037 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:26,037 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-06T06:18:26,037 | ^ 2025-09-06T06:18:26,038 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-06T06:18:26,038 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-06T06:18:26,039 | ^~~~~~~~~~ 2025-09-06T06:18:26,040 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-06T06:18:26,040 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-06T06:18:26,040 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,041 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:26,041 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-06T06:18:26,041 | ^ 2025-09-06T06:18:26,042 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-06T06:18:26,042 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-06T06:18:26,042 | ^~~~~~~~~~ 2025-09-06T06:18:26,043 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-06T06:18:26,043 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-06T06:18:26,043 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,308 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-06T06:18:26,309 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:26,310 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:18:26,310 | ^~ ~~~~~~~~~ 2025-09-06T06:18:26,311 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-06T06:18:26,311 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:18:26,311 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,312 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:18:26,312 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:18:26,312 | ^~~~~~~~~~~~~~~ 2025-09-06T06:18:26,313 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-06T06:18:26,313 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:18:26,314 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,315 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:18:26,315 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:18:26,315 | ^~~~~~~~~~~~~ 2025-09-06T06:18:26,316 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-06T06:18:26,316 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:18:26,316 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,318 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:18:26,319 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:18:26,319 | ^~~~~~~~~~~ 2025-09-06T06:18:26,320 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:26,320 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:18:26,320 | ^~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,321 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-06T06:18:26,321 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:18:26,321 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,323 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:18:26,323 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:18:26,323 | ^~~~~ 2025-09-06T06:18:26,324 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:26,324 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:18:26,324 | ^~~~~~~~~~~ 2025-09-06T06:18:26,325 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:18:26,325 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:18:26,325 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,601 command_dist.c: In function ‘combine_queries’: 2025-09-06T06:18:26,603 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:18:26,603 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-06T06:18:26,603 | ^ 2025-09-06T06:18:26,605 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:18:26,605 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-06T06:18:26,605 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,607 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:18:26,607 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-06T06:18:26,607 | ^ 2025-09-06T06:18:26,609 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:18:26,609 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-06T06:18:26,609 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:26,612 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:26,612 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-06T06:18:26,612 | ^~ ~~~~~~~~ 2025-09-06T06:18:26,614 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-06T06:18:26,614 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-06T06:18:26,614 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,097 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-09-06T06:18:27,267 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-09-06T06:18:27,437 command_set.c: In function ‘sketch_operate’: 2025-09-06T06:18:27,437 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-06T06:18:27,438 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-06T06:18:27,438 | ^ 2025-09-06T06:18:27,449 command_set.c: In function ‘combin_subset_pans’: 2025-09-06T06:18:27,450 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-06T06:18:27,450 457 | free(co_dstat_fpath); 2025-09-06T06:18:27,450 | ^~~~~~~~~~~~~~ 2025-09-06T06:18:27,451 In file included from kssdheaders/global_basic.h:159, 2025-09-06T06:18:27,451 from command_set.c:15: 2025-09-06T06:18:27,451 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-06T06:18:27,451 687 | extern void free (void *__ptr) __THROW; 2025-09-06T06:18:27,451 | ~~~~~~^~~~~ 2025-09-06T06:18:27,457 command_set.c: In function ‘grouping_genomes’: 2025-09-06T06:18:27,458 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-06T06:18:27,458 562 | free(co_dstat_fpath); 2025-09-06T06:18:27,458 | ^~~~~~~~~~~~~~ 2025-09-06T06:18:27,458 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-06T06:18:27,458 687 | extern void free (void *__ptr) __THROW; 2025-09-06T06:18:27,458 | ~~~~~~^~~~~ 2025-09-06T06:18:27,633 command_set.c: In function ‘sketch_union’: 2025-09-06T06:18:27,633 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:18:27,633 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:27,634 | ^ 2025-09-06T06:18:27,634 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:18:27,634 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:27,634 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,634 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,634 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:18:27,634 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:27,634 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,634 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:18:27,634 | ^~~~~~~~~~ 2025-09-06T06:18:27,635 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:18:27,635 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:18:27,635 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,635 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,635 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-06T06:18:27,635 | ^~ ~~~~~~~~~~ 2025-09-06T06:18:27,635 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,635 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-06T06:18:27,635 | ^~~~~~~~~~ 2025-09-06T06:18:27,635 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:18:27,635 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-06T06:18:27,636 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,769 command_set.c: In function ‘sketch_operate’: 2025-09-06T06:18:27,769 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,769 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-06T06:18:27,769 | ^~ ~~~~~~~~~~ 2025-09-06T06:18:27,769 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,769 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-06T06:18:27,769 | ^~~~~~~~~~ 2025-09-06T06:18:27,769 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:18:27,770 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-06T06:18:27,770 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,770 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,770 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-06T06:18:27,770 | ^~ ~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,770 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,770 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-06T06:18:27,770 | ^~~~~~~~~~ 2025-09-06T06:18:27,770 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-06T06:18:27,770 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-06T06:18:27,770 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,771 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,771 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:18:27,771 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:27,771 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,771 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:18:27,771 | ^~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,771 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:18:27,771 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:18:27,771 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,771 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,771 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:18:27,772 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:27,772 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,772 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:18:27,772 | ^~~~~~~~~~ 2025-09-06T06:18:27,772 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:18:27,772 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:18:27,772 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,772 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,772 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:18:27,772 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:27,772 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,773 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:18:27,773 | ^~~~~~~~~~ 2025-09-06T06:18:27,773 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:18:27,773 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:18:27,773 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,773 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,773 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:18:27,773 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:27,773 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,773 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:18:27,773 | ^~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,774 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:18:27,774 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:18:27,774 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,774 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:18:27,774 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:27,774 | ^ 2025-09-06T06:18:27,774 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:18:27,774 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:27,774 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,943 command_set.c: In function ‘uniq_sketch_union’: 2025-09-06T06:18:27,943 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:18:27,943 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-06T06:18:27,943 | ^ 2025-09-06T06:18:27,943 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-09-06T06:18:27,943 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-06T06:18:27,944 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,944 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:18:27,944 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:27,944 | ^ 2025-09-06T06:18:27,944 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:18:27,944 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:27,944 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,945 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,945 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:18:27,945 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:27,945 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,945 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:18:27,945 | ^~~~~~~~~~ 2025-09-06T06:18:27,945 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:18:27,945 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:18:27,945 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,946 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:27,946 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-06T06:18:27,946 | ^~ ~~~~~~~~~~~~~~~ 2025-09-06T06:18:27,946 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:27,946 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-06T06:18:27,946 | ^~~~~~~~~~ 2025-09-06T06:18:27,946 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-06T06:18:27,947 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-06T06:18:27,947 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,088 command_set.c: In function ‘combin_pans’: 2025-09-06T06:18:28,088 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,088 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:18:28,089 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:28,089 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-06T06:18:28,089 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:18:28,089 | ^~~~~~~~~~ 2025-09-06T06:18:28,089 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-06T06:18:28,089 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:18:28,089 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,090 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,090 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:18:28,090 | ^~ ~~~~~~~~~~ 2025-09-06T06:18:28,090 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-06T06:18:28,090 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:18:28,090 | ^~~~~~~~~~ 2025-09-06T06:18:28,091 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-06T06:18:28,091 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:18:28,091 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,092 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:18:28,092 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:28,092 | ^ 2025-09-06T06:18:28,092 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:18:28,092 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:28,092 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,308 command_set.c: In function ‘combin_subset_pans’: 2025-09-06T06:18:28,309 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,309 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:18:28,309 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:28,310 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:28,310 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:18:28,310 | ^~~~~~~~~~ 2025-09-06T06:18:28,310 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:18:28,310 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:18:28,310 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,311 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,311 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:18:28,311 | ^~ ~~~~~~~~~~ 2025-09-06T06:18:28,312 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:28,312 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:18:28,312 | ^~~~~~~~~~ 2025-09-06T06:18:28,312 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:18:28,312 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:18:28,312 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,313 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,313 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:18:28,313 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:28,314 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:28,314 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:18:28,314 | ^~~~~~~~~~ 2025-09-06T06:18:28,314 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:18:28,314 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:18:28,315 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,315 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,316 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:18:28,316 | ^~ ~~~~~~~~~~ 2025-09-06T06:18:28,316 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:28,316 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:18:28,316 | ^~~~~~~~~~ 2025-09-06T06:18:28,317 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:18:28,317 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:18:28,317 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,317 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:18:28,318 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:28,318 | ^ 2025-09-06T06:18:28,318 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:18:28,318 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:28,318 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,554 command_set.c: In function ‘grouping_genomes’: 2025-09-06T06:18:28,555 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,555 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:18:28,555 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:28,556 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:28,556 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:18:28,556 | ^~~~~~~~~~ 2025-09-06T06:18:28,556 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:18:28,556 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:18:28,557 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,557 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,558 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:18:28,558 | ^~ ~~~~~~~~~~ 2025-09-06T06:18:28,558 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:28,558 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:18:28,558 | ^~~~~~~~~~ 2025-09-06T06:18:28,559 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:18:28,559 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:18:28,559 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,560 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,560 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:18:28,561 | ^~ ~~~~~~~~~~~ 2025-09-06T06:18:28,561 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:28,561 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:18:28,561 | ^~~~~~~~~~ 2025-09-06T06:18:28,562 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:18:28,562 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:18:28,562 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,563 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:18:28,563 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:18:28,563 | ^~ ~~~~~~~~~~ 2025-09-06T06:18:28,564 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:18:28,564 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:18:28,564 | ^~~~~~~~~~ 2025-09-06T06:18:28,565 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:18:28,565 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:18:28,565 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,566 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:18:28,566 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:28,566 | ^ 2025-09-06T06:18:28,566 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:18:28,567 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:18:28,567 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:18:28,846 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-09-06T06:18:29,155 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-09-06T06:18:29,325 global_basic.c: In function ‘organize_infile_list’: 2025-09-06T06:18:29,325 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-06T06:18:29,325 195 | while (isspace(*buf)) buf++; 2025-09-06T06:18:29,325 | ^~~~~~~ 2025-09-06T06:18:29,325 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-09-06T06:18:29,326 34 | #include 2025-09-06T06:18:29,326 +++ |+#include 2025-09-06T06:18:29,326 35 | 2025-09-06T06:18:29,326 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:18:29,326 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-06T06:18:29,326 | ~~^ 2025-09-06T06:18:29,326 | | 2025-09-06T06:18:29,326 | long unsigned int 2025-09-06T06:18:29,327 | %u 2025-09-06T06:18:29,327 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-06T06:18:29,327 | ~~~~~~~~~~~ 2025-09-06T06:18:29,327 | | 2025-09-06T06:18:29,327 | size_t {aka unsigned int} 2025-09-06T06:18:29,327 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:18:29,328 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-06T06:18:29,328 | ~~^ 2025-09-06T06:18:29,328 | | 2025-09-06T06:18:29,328 | long unsigned int 2025-09-06T06:18:29,328 | %u 2025-09-06T06:18:29,328 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-06T06:18:29,328 | ~~~~~~~~~~~ 2025-09-06T06:18:29,328 | | 2025-09-06T06:18:29,328 | size_t {aka unsigned int} 2025-09-06T06:18:29,347 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-06T06:18:29,492 ERROR: python setup.py bdist_wheel exited with 1 2025-09-06T06:18:29,504 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-06T06:18:29,504 exec(compile('"'"''"'"''"'"' 2025-09-06T06:18:29,504 # This is -- a caller that pip uses to run setup.py 2025-09-06T06:18:29,504 # 2025-09-06T06:18:29,504 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-06T06:18:29,504 # import from `distutils.core` to work with newer packaging standards. 2025-09-06T06:18:29,504 # - It provides a clear error message when setuptools is not installed. 2025-09-06T06:18:29,504 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-06T06:18:29,504 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-06T06:18:29,504 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-06T06:18:29,504 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-06T06:18:29,504 import os, sys, tokenize, traceback 2025-09-06T06:18:29,504 2025-09-06T06:18:29,504 try: 2025-09-06T06:18:29,504 import setuptools 2025-09-06T06:18:29,504 except ImportError: 2025-09-06T06:18:29,504 print( 2025-09-06T06:18:29,504 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-06T06:18:29,504 "the build environment with exception:", 2025-09-06T06:18:29,504 file=sys.stderr, 2025-09-06T06:18:29,504 ) 2025-09-06T06:18:29,504 traceback.print_exc() 2025-09-06T06:18:29,504 sys.exit(1) 2025-09-06T06:18:29,504 2025-09-06T06:18:29,504 __file__ = %r 2025-09-06T06:18:29,504 sys.argv[0] = __file__ 2025-09-06T06:18:29,504 2025-09-06T06:18:29,504 if os.path.exists(__file__): 2025-09-06T06:18:29,504 filename = __file__ 2025-09-06T06:18:29,504 with tokenize.open(__file__) as f: 2025-09-06T06:18:29,504 setup_py_code = f.read() 2025-09-06T06:18:29,504 else: 2025-09-06T06:18:29,504 filename = "" 2025-09-06T06:18:29,504 setup_py_code = "from setuptools import setup; setup()" 2025-09-06T06:18:29,504 2025-09-06T06:18:29,504 exec(compile(setup_py_code, filename, "exec")) 2025-09-06T06:18:29,504 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-rigzvd5b/kssdutils_7c743c2c195a4ca5b001e6fda5e6353f/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-v8nyv3h5[/] 2025-09-06T06:18:29,504 [bold magenta]cwd[/]: /tmp/pip-wheel-rigzvd5b/kssdutils_7c743c2c195a4ca5b001e6fda5e6353f/ 2025-09-06T06:18:29,504 Building wheel for kssdutils (setup.py): finished with status 'error' 2025-09-06T06:18:29,505 ERROR: Failed building wheel for kssdutils 2025-09-06T06:18:29,505 Running setup.py clean for kssdutils 2025-09-06T06:18:29,506 Running command python setup.py clean 2025-09-06T06:18:30,634 running clean 2025-09-06T06:18:30,779 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-06T06:18:30,780 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-06T06:18:30,780 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-06T06:18:30,780 'build/scripts-3.13' does not exist -- can't clean it 2025-09-06T06:18:30,780 removing 'build' 2025-09-06T06:18:30,891 Failed to build kssdutils 2025-09-06T06:18:30,892 ERROR: Failed to build one or more wheels 2025-09-06T06:18:30,893 Exception information: 2025-09-06T06:18:30,893 Traceback (most recent call last): 2025-09-06T06:18:30,893 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-06T06:18:30,893 status = _inner_run() 2025-09-06T06:18:30,893 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-06T06:18:30,893 return self.run(options, args) 2025-09-06T06:18:30,893 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-06T06:18:30,893 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-06T06:18:30,893 return func(self, options, args) 2025-09-06T06:18:30,893 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-06T06:18:30,893 raise CommandError("Failed to build one or more wheels") 2025-09-06T06:18:30,893 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-06T06:18:30,897 Removed build tracker: '/tmp/pip-build-tracker-3oj9o6wj'