2025-09-06T06:24:05,594 Created temporary directory: /tmp/pip-build-tracker-1a3078x_ 2025-09-06T06:24:05,595 Initialized build tracking at /tmp/pip-build-tracker-1a3078x_ 2025-09-06T06:24:05,595 Created build tracker: /tmp/pip-build-tracker-1a3078x_ 2025-09-06T06:24:05,595 Entered build tracker: /tmp/pip-build-tracker-1a3078x_ 2025-09-06T06:24:05,595 Created temporary directory: /tmp/pip-wheel-795lotp9 2025-09-06T06:24:05,598 Created temporary directory: /tmp/pip-ephem-wheel-cache-cv64vmaf 2025-09-06T06:24:05,658 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-06T06:24:05,660 2 location(s) to search for versions of kssdutils: 2025-09-06T06:24:05,660 * https://pypi.org/simple/kssdutils/ 2025-09-06T06:24:05,660 * https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:24:05,661 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2025-09-06T06:24:05,661 Getting page https://pypi.org/simple/kssdutils/ 2025-09-06T06:24:05,662 Found index url https://pypi.org/simple/ 2025-09-06T06:24:05,732 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2025-09-06T06:24:05,734 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2025-09-06T06:24:05,734 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2025-09-06T06:24:05,734 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2025-09-06T06:24:05,734 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2025-09-06T06:24:05,735 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2025-09-06T06:24:05,735 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2025-09-06T06:24:05,735 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2025-09-06T06:24:05,735 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2025-09-06T06:24:05,735 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2025-09-06T06:24:05,735 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2025-09-06T06:24:05,736 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2025-09-06T06:24:05,736 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2025-09-06T06:24:05,736 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:24:05,736 Getting page https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:24:05,737 Found index url https://www.piwheels.org/simple/ 2025-09-06T06:24:05,822 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2025-09-06T06:24:05,829 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,829 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,829 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,829 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:24:05,834 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:24:05,834 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2025-09-06T06:24:05,857 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2025-09-06T06:24:05,858 Collecting kssdutils==1.0.6 2025-09-06T06:24:05,860 Created temporary directory: /tmp/pip-unpack-r_370ccw 2025-09-06T06:24:05,996 Downloading kssdutils-1.0.6.tar.gz (44 kB) 2025-09-06T06:24:06,046 Added kssdutils==1.0.6 from https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-1a3078x_' 2025-09-06T06:24:06,048 Running setup.py (path:/tmp/pip-wheel-795lotp9/kssdutils_e2acdf32c0954c1c8128505f3366986c/setup.py) egg_info for package kssdutils 2025-09-06T06:24:06,048 Created temporary directory: /tmp/pip-pip-egg-info-h80m2xtr 2025-09-06T06:24:06,049 Preparing metadata (setup.py): started 2025-09-06T06:24:06,049 Running command python setup.py egg_info 2025-09-06T06:24:07,288 running egg_info 2025-09-06T06:24:07,364 creating /tmp/pip-pip-egg-info-h80m2xtr/kssdutils.egg-info 2025-09-06T06:24:07,365 writing /tmp/pip-pip-egg-info-h80m2xtr/kssdutils.egg-info/PKG-INFO 2025-09-06T06:24:07,366 writing dependency_links to /tmp/pip-pip-egg-info-h80m2xtr/kssdutils.egg-info/dependency_links.txt 2025-09-06T06:24:07,366 writing top-level names to /tmp/pip-pip-egg-info-h80m2xtr/kssdutils.egg-info/top_level.txt 2025-09-06T06:24:07,367 writing manifest file '/tmp/pip-pip-egg-info-h80m2xtr/kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:24:07,664 reading manifest file '/tmp/pip-pip-egg-info-h80m2xtr/kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:24:07,665 reading manifest template 'MANIFEST.in' 2025-09-06T06:24:07,669 writing manifest file '/tmp/pip-pip-egg-info-h80m2xtr/kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:24:07,783 Preparing metadata (setup.py): finished with status 'done' 2025-09-06T06:24:07,787 Source in /tmp/pip-wheel-795lotp9/kssdutils_e2acdf32c0954c1c8128505f3366986c has version 1.0.6, which satisfies requirement kssdutils==1.0.6 from https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz 2025-09-06T06:24:07,788 Removed kssdutils==1.0.6 from https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-1a3078x_' 2025-09-06T06:24:07,790 Created temporary directory: /tmp/pip-unpack-77qiv15_ 2025-09-06T06:24:07,791 Created temporary directory: /tmp/pip-unpack-aq8jzs67 2025-09-06T06:24:07,791 Building wheels for collected packages: kssdutils 2025-09-06T06:24:07,792 Created temporary directory: /tmp/pip-wheel-_ffmh54r 2025-09-06T06:24:07,793 DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-06T06:24:07,794 Building wheel for kssdutils (setup.py): started 2025-09-06T06:24:07,794 Destination directory: /tmp/pip-wheel-_ffmh54r 2025-09-06T06:24:07,794 Running command python setup.py bdist_wheel 2025-09-06T06:24:08,860 running bdist_wheel 2025-09-06T06:24:09,224 running build 2025-09-06T06:24:09,225 running build_py 2025-09-06T06:24:09,300 creating build/lib.linux-armv7l-cpython-313 2025-09-06T06:24:09,300 copying kssdutils.py -> build/lib.linux-armv7l-cpython-313 2025-09-06T06:24:09,301 running egg_info 2025-09-06T06:24:09,376 writing kssdutils.egg-info/PKG-INFO 2025-09-06T06:24:09,377 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2025-09-06T06:24:09,378 writing top-level names to kssdutils.egg-info/top_level.txt 2025-09-06T06:24:09,455 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:24:09,457 reading manifest template 'MANIFEST.in' 2025-09-06T06:24:09,461 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:24:09,462 running build_ext 2025-09-06T06:24:09,820 building 'kssdtool' extension 2025-09-06T06:24:09,822 creating build/temp.linux-armv7l-cpython-313 2025-09-06T06:24:09,824 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-09-06T06:24:09,989 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-06T06:24:09,989 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-06T06:24:09,989 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-06T06:24:09,990 | ^ 2025-09-06T06:24:09,993 co2mco.c: In function ‘co2unitllmco’: 2025-09-06T06:24:09,994 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-06T06:24:09,994 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-06T06:24:09,994 | ^ 2025-09-06T06:24:10,677 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-09-06T06:24:11,059 command_composite.c: In function ‘get_species_abundance’: 2025-09-06T06:24:11,060 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-06T06:24:11,060 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-06T06:24:11,060 | ^~ 2025-09-06T06:24:11,060 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-06T06:24:11,060 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-06T06:24:11,060 | ^~ 2025-09-06T06:24:11,060 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:11,060 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-06T06:24:11,061 | ^ 2025-09-06T06:24:11,061 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:11,061 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-06T06:24:11,061 | ^~~~~~~~~~ 2025-09-06T06:24:11,061 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:24:11,061 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-06T06:24:11,061 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,061 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:11,061 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-06T06:24:11,061 | ^ 2025-09-06T06:24:11,062 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:11,062 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-06T06:24:11,062 | ^~~~~~~~~~ 2025-09-06T06:24:11,062 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:24:11,062 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-06T06:24:11,062 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,062 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:11,062 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:24:11,062 | ^ 2025-09-06T06:24:11,062 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:11,063 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:24:11,063 | ^~~~~~~~~~ 2025-09-06T06:24:11,063 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:24:11,063 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:24:11,063 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,063 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:11,063 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-06T06:24:11,063 | ^ 2025-09-06T06:24:11,063 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:11,063 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-06T06:24:11,063 | ^~~~~~~~~~ 2025-09-06T06:24:11,064 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:24:11,064 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-06T06:24:11,064 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,064 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:11,064 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:24:11,064 | ^ 2025-09-06T06:24:11,064 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:11,064 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:24:11,064 | ^~~~~~~~~~~~ 2025-09-06T06:24:11,065 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-09-06T06:24:11,065 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:24:11,065 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,305 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-09-06T06:24:11,537 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-06T06:24:11,539 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:24:11,539 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:24:11,539 | ~~^ 2025-09-06T06:24:11,539 | | 2025-09-06T06:24:11,540 | long unsigned int 2025-09-06T06:24:11,540 | %u 2025-09-06T06:24:11,540 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:24:11,540 | ~~~~~~~ 2025-09-06T06:24:11,540 | | 2025-09-06T06:24:11,540 | size_t {aka unsigned int} 2025-09-06T06:24:11,541 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:24:11,541 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:24:11,541 | ~~^ 2025-09-06T06:24:11,541 | | 2025-09-06T06:24:11,542 | long unsigned int 2025-09-06T06:24:11,542 | %u 2025-09-06T06:24:11,542 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:24:11,542 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:24:11,542 | ~~~~~~~~~ 2025-09-06T06:24:11,542 | | 2025-09-06T06:24:11,542 | size_t {aka unsigned int} 2025-09-06T06:24:11,543 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-06T06:24:11,543 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:24:11,543 | ~~^ 2025-09-06T06:24:11,543 | | 2025-09-06T06:24:11,544 | long unsigned int 2025-09-06T06:24:11,544 | %u 2025-09-06T06:24:11,544 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:24:11,544 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:24:11,544 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,544 | | 2025-09-06T06:24:11,544 | unsigned int 2025-09-06T06:24:11,546 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-06T06:24:11,547 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-06T06:24:11,547 | ^ 2025-09-06T06:24:11,554 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-06T06:24:11,556 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:24:11,556 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-06T06:24:11,557 | ~~^ ~~~~~~~ 2025-09-06T06:24:11,557 | | | 2025-09-06T06:24:11,557 | long unsigned int size_t {aka unsigned int} 2025-09-06T06:24:11,557 | %u 2025-09-06T06:24:11,559 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:24:11,559 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-06T06:24:11,559 | ~~^ 2025-09-06T06:24:11,559 | | 2025-09-06T06:24:11,559 | long unsigned int 2025-09-06T06:24:11,559 | %u 2025-09-06T06:24:11,559 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-06T06:24:11,559 | ~~~~~~~~~ 2025-09-06T06:24:11,560 | | 2025-09-06T06:24:11,560 | size_t {aka unsigned int} 2025-09-06T06:24:11,561 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-06T06:24:11,562 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-06T06:24:11,562 | ~~^ 2025-09-06T06:24:11,562 | | 2025-09-06T06:24:11,562 | long unsigned int 2025-09-06T06:24:11,562 | %u 2025-09-06T06:24:11,562 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-06T06:24:11,562 865 | (size_t) b * unitsz_distf_mapped); 2025-09-06T06:24:11,562 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,562 | | 2025-09-06T06:24:11,562 | unsigned int 2025-09-06T06:24:11,564 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-06T06:24:11,564 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-06T06:24:11,564 | ^~~~~~~ 2025-09-06T06:24:11,565 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-06T06:24:11,565 809 | struct stat cbd_fcode_stat; 2025-09-06T06:24:11,565 | ^~~~~~~~~~~~~~ 2025-09-06T06:24:11,566 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-06T06:24:11,566 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-06T06:24:11,566 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,567 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-06T06:24:11,567 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-06T06:24:11,567 | ^~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,574 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-06T06:24:11,576 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:24:11,576 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:24:11,577 | ~~^ 2025-09-06T06:24:11,577 | | 2025-09-06T06:24:11,577 | long unsigned int 2025-09-06T06:24:11,577 | %u 2025-09-06T06:24:11,577 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:24:11,577 | ~~~~~~~ 2025-09-06T06:24:11,577 | | 2025-09-06T06:24:11,577 | size_t {aka unsigned int} 2025-09-06T06:24:11,579 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:24:11,579 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:24:11,579 | ~~^ 2025-09-06T06:24:11,580 | | 2025-09-06T06:24:11,580 | long unsigned int 2025-09-06T06:24:11,580 | %u 2025-09-06T06:24:11,580 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:24:11,580 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:24:11,580 | ~~~~~~~~~ 2025-09-06T06:24:11,580 | | 2025-09-06T06:24:11,580 | size_t {aka unsigned int} 2025-09-06T06:24:11,582 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-06T06:24:11,582 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:24:11,582 | ~~^ 2025-09-06T06:24:11,583 | | 2025-09-06T06:24:11,583 | long unsigned int 2025-09-06T06:24:11,583 | %u 2025-09-06T06:24:11,583 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:24:11,583 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:24:11,583 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:11,583 | | 2025-09-06T06:24:11,583 | unsigned int 2025-09-06T06:24:11,588 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-06T06:24:11,589 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-06T06:24:11,589 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-06T06:24:11,589 | ^ 2025-09-06T06:24:11,590 command_dist.c: In function ‘fname_dist_print’: 2025-09-06T06:24:11,592 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-09-06T06:24:11,592 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-09-06T06:24:11,592 | ^ 2025-09-06T06:24:11,597 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-06T06:24:11,598 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:24:11,598 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-06T06:24:11,598 | ^ 2025-09-06T06:24:11,601 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:24:11,601 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-06T06:24:11,601 | ^ 2025-09-06T06:24:11,606 command_dist.c: In function ‘dist_print_nobin’: 2025-09-06T06:24:11,608 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:24:11,608 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-06T06:24:11,608 | ^ 2025-09-06T06:24:11,611 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:24:11,611 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-06T06:24:11,611 | ^ 2025-09-06T06:24:11,614 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:24:11,614 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-06T06:24:11,614 | ^ 2025-09-06T06:24:12,006 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-06T06:24:12,006 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-06T06:24:12,006 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-06T06:24:12,006 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:12,007 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-06T06:24:12,007 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-06T06:24:12,007 | ^~~~~~~~~~~~ 2025-09-06T06:24:12,815 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-06T06:24:12,815 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-06T06:24:12,816 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-06T06:24:12,816 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:12,816 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-06T06:24:12,816 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-06T06:24:12,816 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:13,736 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-06T06:24:13,737 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:13,738 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:24:13,738 | ^~ ~~~~~~~~~ 2025-09-06T06:24:13,738 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-06T06:24:13,738 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:24:13,738 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:13,739 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:24:13,739 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:24:13,739 | ^~~~~~~~~~~~~~~ 2025-09-06T06:24:13,740 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-06T06:24:13,740 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:24:13,740 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:13,742 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:24:13,742 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:24:13,743 | ^~~~~~~~~~~ 2025-09-06T06:24:13,743 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:13,743 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:24:13,743 | ^~~~~~~~~~~~~~~~~ 2025-09-06T06:24:13,744 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-06T06:24:13,744 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:24:13,744 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:13,745 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:24:13,745 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:24:13,745 | ^~~~~ 2025-09-06T06:24:13,746 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:13,746 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:24:13,746 | ^~~~~~~~~~~ 2025-09-06T06:24:13,747 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:24:13,747 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:24:13,747 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:13,995 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-06T06:24:13,997 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:13,997 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:24:13,997 | ^~ ~~~~~~~~~ 2025-09-06T06:24:13,998 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-06T06:24:13,998 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:24:13,998 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:13,999 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:24:13,999 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:24:13,999 | ^~~~~~~~~~~~~~~ 2025-09-06T06:24:14,000 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-06T06:24:14,000 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:24:14,000 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,001 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:24:14,001 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:24:14,001 | ^~~~~~~~~~~~~ 2025-09-06T06:24:14,002 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-06T06:24:14,002 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:24:14,002 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,003 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:14,004 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-06T06:24:14,004 | ^ 2025-09-06T06:24:14,005 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-06T06:24:14,005 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-06T06:24:14,005 | ^~~~~~~~~~ 2025-09-06T06:24:14,006 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-06T06:24:14,006 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-06T06:24:14,006 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,007 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:14,007 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-06T06:24:14,007 | ^ 2025-09-06T06:24:14,008 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-06T06:24:14,008 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-06T06:24:14,008 | ^~~~~~~~~~ 2025-09-06T06:24:14,009 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-06T06:24:14,009 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-06T06:24:14,009 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,276 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-06T06:24:14,277 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:14,277 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:24:14,277 | ^~ ~~~~~~~~~ 2025-09-06T06:24:14,278 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-06T06:24:14,279 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:24:14,279 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,280 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:24:14,280 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:24:14,280 | ^~~~~~~~~~~~~~~ 2025-09-06T06:24:14,281 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-06T06:24:14,281 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:24:14,281 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,283 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:24:14,283 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:24:14,283 | ^~~~~~~~~~~~~ 2025-09-06T06:24:14,284 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-06T06:24:14,284 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:24:14,284 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,286 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:24:14,287 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:24:14,287 | ^~~~~~~~~~~ 2025-09-06T06:24:14,288 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:14,288 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:24:14,288 | ^~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,289 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-06T06:24:14,289 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:24:14,289 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,291 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:24:14,291 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:24:14,291 | ^~~~~ 2025-09-06T06:24:14,292 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:14,292 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:24:14,292 | ^~~~~~~~~~~ 2025-09-06T06:24:14,293 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:24:14,293 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:24:14,293 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,571 command_dist.c: In function ‘combine_queries’: 2025-09-06T06:24:14,573 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:24:14,573 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-06T06:24:14,573 | ^ 2025-09-06T06:24:14,575 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:24:14,575 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-06T06:24:14,575 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,577 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:24:14,577 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-06T06:24:14,577 | ^ 2025-09-06T06:24:14,579 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:24:14,579 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-06T06:24:14,579 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:14,582 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:14,583 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-06T06:24:14,583 | ^~ ~~~~~~~~ 2025-09-06T06:24:14,585 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-06T06:24:14,585 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-06T06:24:14,585 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,075 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-09-06T06:24:15,245 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-09-06T06:24:15,418 command_set.c: In function ‘sketch_operate’: 2025-09-06T06:24:15,419 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-06T06:24:15,419 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-06T06:24:15,419 | ^ 2025-09-06T06:24:15,432 command_set.c: In function ‘combin_subset_pans’: 2025-09-06T06:24:15,432 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-06T06:24:15,433 457 | free(co_dstat_fpath); 2025-09-06T06:24:15,433 | ^~~~~~~~~~~~~~ 2025-09-06T06:24:15,433 In file included from kssdheaders/global_basic.h:159, 2025-09-06T06:24:15,433 from command_set.c:15: 2025-09-06T06:24:15,433 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-06T06:24:15,434 687 | extern void free (void *__ptr) __THROW; 2025-09-06T06:24:15,434 | ~~~~~~^~~~~ 2025-09-06T06:24:15,440 command_set.c: In function ‘grouping_genomes’: 2025-09-06T06:24:15,440 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-06T06:24:15,440 562 | free(co_dstat_fpath); 2025-09-06T06:24:15,440 | ^~~~~~~~~~~~~~ 2025-09-06T06:24:15,441 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-06T06:24:15,441 687 | extern void free (void *__ptr) __THROW; 2025-09-06T06:24:15,441 | ~~~~~~^~~~~ 2025-09-06T06:24:15,616 command_set.c: In function ‘sketch_union’: 2025-09-06T06:24:15,617 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:24:15,617 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:15,617 | ^ 2025-09-06T06:24:15,617 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:24:15,617 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:15,617 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,617 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,617 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:24:15,618 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:15,618 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,618 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:24:15,618 | ^~~~~~~~~~ 2025-09-06T06:24:15,618 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:24:15,618 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:24:15,618 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,618 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,618 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-06T06:24:15,618 | ^~ ~~~~~~~~~~ 2025-09-06T06:24:15,619 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,619 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-06T06:24:15,619 | ^~~~~~~~~~ 2025-09-06T06:24:15,619 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:24:15,619 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-06T06:24:15,619 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,748 command_set.c: In function ‘sketch_operate’: 2025-09-06T06:24:15,749 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,749 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-06T06:24:15,749 | ^~ ~~~~~~~~~~ 2025-09-06T06:24:15,749 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,749 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-06T06:24:15,749 | ^~~~~~~~~~ 2025-09-06T06:24:15,749 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:24:15,749 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-06T06:24:15,749 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,750 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,750 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-06T06:24:15,750 | ^~ ~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,750 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,750 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-06T06:24:15,750 | ^~~~~~~~~~ 2025-09-06T06:24:15,750 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-06T06:24:15,750 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-06T06:24:15,750 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,750 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,751 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:24:15,751 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:15,751 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,751 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:24:15,751 | ^~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,751 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:24:15,751 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:24:15,751 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,751 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,751 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:24:15,751 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:15,751 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,752 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:24:15,752 | ^~~~~~~~~~ 2025-09-06T06:24:15,752 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:24:15,752 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:24:15,752 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,752 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,752 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:24:15,752 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:15,752 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,752 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:24:15,752 | ^~~~~~~~~~ 2025-09-06T06:24:15,753 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:24:15,753 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:24:15,753 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,753 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,753 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:24:15,753 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:15,753 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,753 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:24:15,753 | ^~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,753 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:24:15,753 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:24:15,754 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,754 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:24:15,754 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:15,754 | ^ 2025-09-06T06:24:15,754 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:24:15,754 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:15,754 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,920 command_set.c: In function ‘uniq_sketch_union’: 2025-09-06T06:24:15,921 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:24:15,921 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-06T06:24:15,921 | ^ 2025-09-06T06:24:15,921 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-09-06T06:24:15,921 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-06T06:24:15,921 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,921 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:24:15,921 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:15,921 | ^ 2025-09-06T06:24:15,922 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:24:15,922 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:15,922 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,922 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,922 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:24:15,922 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:15,923 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,923 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:24:15,923 | ^~~~~~~~~~ 2025-09-06T06:24:15,923 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:24:15,923 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:24:15,923 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,923 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:15,924 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-06T06:24:15,924 | ^~ ~~~~~~~~~~~~~~~ 2025-09-06T06:24:15,924 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:15,924 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-06T06:24:15,924 | ^~~~~~~~~~ 2025-09-06T06:24:15,924 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-06T06:24:15,924 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-06T06:24:15,924 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,066 command_set.c: In function ‘combin_pans’: 2025-09-06T06:24:16,066 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,067 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:24:16,067 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:16,067 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-06T06:24:16,067 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:24:16,067 | ^~~~~~~~~~ 2025-09-06T06:24:16,067 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-06T06:24:16,067 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:24:16,067 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,068 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,068 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:24:16,068 | ^~ ~~~~~~~~~~ 2025-09-06T06:24:16,068 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-06T06:24:16,068 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:24:16,068 | ^~~~~~~~~~ 2025-09-06T06:24:16,069 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-06T06:24:16,069 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:24:16,069 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,070 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:24:16,070 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:16,070 | ^ 2025-09-06T06:24:16,070 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:24:16,070 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:16,070 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,286 command_set.c: In function ‘combin_subset_pans’: 2025-09-06T06:24:16,287 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,287 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:24:16,287 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:16,288 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:16,288 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:24:16,288 | ^~~~~~~~~~ 2025-09-06T06:24:16,289 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:24:16,289 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:24:16,289 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,289 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,290 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:24:16,290 | ^~ ~~~~~~~~~~ 2025-09-06T06:24:16,290 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:16,290 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:24:16,290 | ^~~~~~~~~~ 2025-09-06T06:24:16,291 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:24:16,291 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:24:16,291 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,292 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,292 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:24:16,292 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:16,292 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:16,292 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:24:16,292 | ^~~~~~~~~~ 2025-09-06T06:24:16,293 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:24:16,293 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:24:16,293 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,294 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,294 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:24:16,294 | ^~ ~~~~~~~~~~ 2025-09-06T06:24:16,295 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:16,295 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:24:16,295 | ^~~~~~~~~~ 2025-09-06T06:24:16,295 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:24:16,295 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:24:16,295 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,296 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:24:16,296 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:16,296 | ^ 2025-09-06T06:24:16,297 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:24:16,297 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:16,297 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,532 command_set.c: In function ‘grouping_genomes’: 2025-09-06T06:24:16,533 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,533 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:24:16,533 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:16,534 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:16,534 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:24:16,534 | ^~~~~~~~~~ 2025-09-06T06:24:16,535 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:24:16,535 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:24:16,535 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,536 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,536 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:24:16,536 | ^~ ~~~~~~~~~~ 2025-09-06T06:24:16,537 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:16,537 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:24:16,537 | ^~~~~~~~~~ 2025-09-06T06:24:16,538 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:24:16,538 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:24:16,538 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,539 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,540 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:24:16,540 | ^~ ~~~~~~~~~~~ 2025-09-06T06:24:16,540 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:16,540 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:24:16,540 | ^~~~~~~~~~ 2025-09-06T06:24:16,541 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:24:16,541 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:24:16,541 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,542 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:24:16,542 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:24:16,543 | ^~ ~~~~~~~~~~ 2025-09-06T06:24:16,543 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:24:16,543 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:24:16,543 | ^~~~~~~~~~ 2025-09-06T06:24:16,544 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:24:16,544 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:24:16,544 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,545 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:24:16,545 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:16,545 | ^ 2025-09-06T06:24:16,546 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:24:16,546 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:24:16,546 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:24:16,829 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-09-06T06:24:17,141 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-09-06T06:24:17,330 global_basic.c: In function ‘organize_infile_list’: 2025-09-06T06:24:17,331 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-06T06:24:17,331 195 | while (isspace(*buf)) buf++; 2025-09-06T06:24:17,331 | ^~~~~~~ 2025-09-06T06:24:17,331 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-09-06T06:24:17,331 34 | #include 2025-09-06T06:24:17,331 +++ |+#include 2025-09-06T06:24:17,331 35 | 2025-09-06T06:24:17,331 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:24:17,332 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-06T06:24:17,332 | ~~^ 2025-09-06T06:24:17,332 | | 2025-09-06T06:24:17,332 | long unsigned int 2025-09-06T06:24:17,332 | %u 2025-09-06T06:24:17,332 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-06T06:24:17,332 | ~~~~~~~~~~~ 2025-09-06T06:24:17,332 | | 2025-09-06T06:24:17,332 | size_t {aka unsigned int} 2025-09-06T06:24:17,333 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:24:17,333 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-06T06:24:17,333 | ~~^ 2025-09-06T06:24:17,333 | | 2025-09-06T06:24:17,334 | long unsigned int 2025-09-06T06:24:17,334 | %u 2025-09-06T06:24:17,334 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-06T06:24:17,334 | ~~~~~~~~~~~ 2025-09-06T06:24:17,334 | | 2025-09-06T06:24:17,334 | size_t {aka unsigned int} 2025-09-06T06:24:17,360 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-06T06:24:17,504 ERROR: python setup.py bdist_wheel exited with 1 2025-09-06T06:24:17,516 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-06T06:24:17,516 exec(compile('"'"''"'"''"'"' 2025-09-06T06:24:17,516 # This is -- a caller that pip uses to run setup.py 2025-09-06T06:24:17,516 # 2025-09-06T06:24:17,516 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-06T06:24:17,516 # import from `distutils.core` to work with newer packaging standards. 2025-09-06T06:24:17,516 # - It provides a clear error message when setuptools is not installed. 2025-09-06T06:24:17,516 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-06T06:24:17,516 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-06T06:24:17,516 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-06T06:24:17,516 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-06T06:24:17,516 import os, sys, tokenize, traceback 2025-09-06T06:24:17,516 2025-09-06T06:24:17,516 try: 2025-09-06T06:24:17,516 import setuptools 2025-09-06T06:24:17,516 except ImportError: 2025-09-06T06:24:17,516 print( 2025-09-06T06:24:17,516 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-06T06:24:17,516 "the build environment with exception:", 2025-09-06T06:24:17,516 file=sys.stderr, 2025-09-06T06:24:17,516 ) 2025-09-06T06:24:17,516 traceback.print_exc() 2025-09-06T06:24:17,516 sys.exit(1) 2025-09-06T06:24:17,516 2025-09-06T06:24:17,516 __file__ = %r 2025-09-06T06:24:17,516 sys.argv[0] = __file__ 2025-09-06T06:24:17,516 2025-09-06T06:24:17,516 if os.path.exists(__file__): 2025-09-06T06:24:17,516 filename = __file__ 2025-09-06T06:24:17,516 with tokenize.open(__file__) as f: 2025-09-06T06:24:17,516 setup_py_code = f.read() 2025-09-06T06:24:17,516 else: 2025-09-06T06:24:17,516 filename = "" 2025-09-06T06:24:17,516 setup_py_code = "from setuptools import setup; setup()" 2025-09-06T06:24:17,516 2025-09-06T06:24:17,516 exec(compile(setup_py_code, filename, "exec")) 2025-09-06T06:24:17,516 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-795lotp9/kssdutils_e2acdf32c0954c1c8128505f3366986c/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-_ffmh54r[/] 2025-09-06T06:24:17,517 [bold magenta]cwd[/]: /tmp/pip-wheel-795lotp9/kssdutils_e2acdf32c0954c1c8128505f3366986c/ 2025-09-06T06:24:17,517 Building wheel for kssdutils (setup.py): finished with status 'error' 2025-09-06T06:24:17,518 ERROR: Failed building wheel for kssdutils 2025-09-06T06:24:17,519 Running setup.py clean for kssdutils 2025-09-06T06:24:17,519 Running command python setup.py clean 2025-09-06T06:24:18,664 running clean 2025-09-06T06:24:18,809 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-06T06:24:18,810 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-06T06:24:18,810 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-06T06:24:18,810 'build/scripts-3.13' does not exist -- can't clean it 2025-09-06T06:24:18,810 removing 'build' 2025-09-06T06:24:18,923 Failed to build kssdutils 2025-09-06T06:24:18,924 ERROR: Failed to build one or more wheels 2025-09-06T06:24:18,925 Exception information: 2025-09-06T06:24:18,925 Traceback (most recent call last): 2025-09-06T06:24:18,925 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-06T06:24:18,925 status = _inner_run() 2025-09-06T06:24:18,925 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-06T06:24:18,925 return self.run(options, args) 2025-09-06T06:24:18,925 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-06T06:24:18,925 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-06T06:24:18,925 return func(self, options, args) 2025-09-06T06:24:18,925 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-06T06:24:18,925 raise CommandError("Failed to build one or more wheels") 2025-09-06T06:24:18,925 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-06T06:24:18,929 Removed build tracker: '/tmp/pip-build-tracker-1a3078x_'