2025-09-06T06:40:54,575 Created temporary directory: /tmp/pip-build-tracker-0u6j4com 2025-09-06T06:40:54,576 Initialized build tracking at /tmp/pip-build-tracker-0u6j4com 2025-09-06T06:40:54,576 Created build tracker: /tmp/pip-build-tracker-0u6j4com 2025-09-06T06:40:54,576 Entered build tracker: /tmp/pip-build-tracker-0u6j4com 2025-09-06T06:40:54,577 Created temporary directory: /tmp/pip-wheel-9hmez2k7 2025-09-06T06:40:54,580 Created temporary directory: /tmp/pip-ephem-wheel-cache-4pf33fj3 2025-09-06T06:40:54,642 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-06T06:40:54,645 2 location(s) to search for versions of kssdutils: 2025-09-06T06:40:54,645 * https://pypi.org/simple/kssdutils/ 2025-09-06T06:40:54,645 * https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:40:54,645 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2025-09-06T06:40:54,645 Getting page https://pypi.org/simple/kssdutils/ 2025-09-06T06:40:54,647 Found index url https://pypi.org/simple/ 2025-09-06T06:40:54,716 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2025-09-06T06:40:54,718 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2025-09-06T06:40:54,718 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2025-09-06T06:40:54,718 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2025-09-06T06:40:54,719 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2025-09-06T06:40:54,719 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2025-09-06T06:40:54,719 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2025-09-06T06:40:54,719 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2025-09-06T06:40:54,720 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2025-09-06T06:40:54,720 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2025-09-06T06:40:54,720 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2025-09-06T06:40:54,720 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2025-09-06T06:40:54,721 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2025-09-06T06:40:54,721 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:40:54,721 Getting page https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:40:54,722 Found index url https://www.piwheels.org/simple/ 2025-09-06T06:40:54,822 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2025-09-06T06:40:54,829 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,829 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,829 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,829 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,829 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,830 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,831 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,832 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,833 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-06T06:40:54,833 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2025-09-06T06:40:54,834 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2025-09-06T06:40:54,860 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2025-09-06T06:40:54,861 Collecting kssdutils==1.0.7 2025-09-06T06:40:54,862 Created temporary directory: /tmp/pip-unpack-sayl1rg4 2025-09-06T06:40:54,999 Downloading kssdutils-1.0.7.tar.gz (44 kB) 2025-09-06T06:40:55,048 Added kssdutils==1.0.7 from https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-0u6j4com' 2025-09-06T06:40:55,050 Running setup.py (path:/tmp/pip-wheel-9hmez2k7/kssdutils_f2e567cc82644c319278d29bdd0a95f3/setup.py) egg_info for package kssdutils 2025-09-06T06:40:55,050 Created temporary directory: /tmp/pip-pip-egg-info-7gdhakoe 2025-09-06T06:40:55,050 Preparing metadata (setup.py): started 2025-09-06T06:40:55,051 Running command python setup.py egg_info 2025-09-06T06:40:56,331 running egg_info 2025-09-06T06:40:56,409 creating /tmp/pip-pip-egg-info-7gdhakoe/kssdutils.egg-info 2025-09-06T06:40:56,409 writing /tmp/pip-pip-egg-info-7gdhakoe/kssdutils.egg-info/PKG-INFO 2025-09-06T06:40:56,410 writing dependency_links to /tmp/pip-pip-egg-info-7gdhakoe/kssdutils.egg-info/dependency_links.txt 2025-09-06T06:40:56,411 writing top-level names to /tmp/pip-pip-egg-info-7gdhakoe/kssdutils.egg-info/top_level.txt 2025-09-06T06:40:56,411 writing manifest file '/tmp/pip-pip-egg-info-7gdhakoe/kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:40:56,942 reading manifest file '/tmp/pip-pip-egg-info-7gdhakoe/kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:40:56,942 reading manifest template 'MANIFEST.in' 2025-09-06T06:40:56,946 writing manifest file '/tmp/pip-pip-egg-info-7gdhakoe/kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:40:57,058 Preparing metadata (setup.py): finished with status 'done' 2025-09-06T06:40:57,062 Source in /tmp/pip-wheel-9hmez2k7/kssdutils_f2e567cc82644c319278d29bdd0a95f3 has version 1.0.7, which satisfies requirement kssdutils==1.0.7 from https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz 2025-09-06T06:40:57,062 Removed kssdutils==1.0.7 from https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-0u6j4com' 2025-09-06T06:40:57,065 Created temporary directory: /tmp/pip-unpack-vxkl7dv1 2025-09-06T06:40:57,065 Created temporary directory: /tmp/pip-unpack-rny4ec00 2025-09-06T06:40:57,066 Building wheels for collected packages: kssdutils 2025-09-06T06:40:57,067 Created temporary directory: /tmp/pip-wheel-sv04r68u 2025-09-06T06:40:57,067 DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-06T06:40:57,068 Building wheel for kssdutils (setup.py): started 2025-09-06T06:40:57,069 Destination directory: /tmp/pip-wheel-sv04r68u 2025-09-06T06:40:57,069 Running command python setup.py bdist_wheel 2025-09-06T06:40:58,151 running bdist_wheel 2025-09-06T06:40:58,520 running build 2025-09-06T06:40:58,520 running build_py 2025-09-06T06:40:58,597 creating build/lib.linux-armv7l-cpython-313 2025-09-06T06:40:58,597 copying kssdutils.py -> build/lib.linux-armv7l-cpython-313 2025-09-06T06:40:58,598 running egg_info 2025-09-06T06:40:58,673 writing kssdutils.egg-info/PKG-INFO 2025-09-06T06:40:58,674 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2025-09-06T06:40:58,675 writing top-level names to kssdutils.egg-info/top_level.txt 2025-09-06T06:40:58,751 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:40:58,753 reading manifest template 'MANIFEST.in' 2025-09-06T06:40:58,758 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-06T06:40:58,758 running build_ext 2025-09-06T06:40:59,095 building 'kssdtool' extension 2025-09-06T06:40:59,097 creating build/temp.linux-armv7l-cpython-313 2025-09-06T06:40:59,098 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-09-06T06:40:59,271 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-06T06:40:59,272 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-06T06:40:59,272 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-06T06:40:59,272 | ^ 2025-09-06T06:40:59,276 co2mco.c: In function ‘co2unitllmco’: 2025-09-06T06:40:59,276 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-06T06:40:59,276 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-06T06:40:59,276 | ^ 2025-09-06T06:40:59,956 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-09-06T06:41:00,339 command_composite.c: In function ‘get_species_abundance’: 2025-09-06T06:41:00,339 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-06T06:41:00,339 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-06T06:41:00,340 | ^~ 2025-09-06T06:41:00,340 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-06T06:41:00,340 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-06T06:41:00,340 | ^~ 2025-09-06T06:41:00,340 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:00,341 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-06T06:41:00,341 | ^ 2025-09-06T06:41:00,341 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:00,341 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-06T06:41:00,341 | ^~~~~~~~~~ 2025-09-06T06:41:00,342 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:41:00,342 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-06T06:41:00,342 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,342 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:00,342 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-06T06:41:00,342 | ^ 2025-09-06T06:41:00,343 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:00,343 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-06T06:41:00,343 | ^~~~~~~~~~ 2025-09-06T06:41:00,343 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:41:00,343 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-06T06:41:00,343 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,344 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:00,344 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:41:00,344 | ^ 2025-09-06T06:41:00,344 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:00,344 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:41:00,344 | ^~~~~~~~~~ 2025-09-06T06:41:00,344 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:41:00,345 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:41:00,345 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,345 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:00,345 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-06T06:41:00,345 | ^ 2025-09-06T06:41:00,345 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:00,346 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-06T06:41:00,346 | ^~~~~~~~~~ 2025-09-06T06:41:00,346 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-06T06:41:00,346 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-06T06:41:00,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,346 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:00,347 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:41:00,347 | ^ 2025-09-06T06:41:00,347 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:00,347 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:41:00,347 | ^~~~~~~~~~~~ 2025-09-06T06:41:00,347 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-09-06T06:41:00,348 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-06T06:41:00,348 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,593 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-09-06T06:41:00,821 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-06T06:41:00,823 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:41:00,823 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:41:00,823 | ~~^ 2025-09-06T06:41:00,823 | | 2025-09-06T06:41:00,823 | long unsigned int 2025-09-06T06:41:00,823 | %u 2025-09-06T06:41:00,823 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:41:00,824 | ~~~~~~~ 2025-09-06T06:41:00,824 | | 2025-09-06T06:41:00,824 | size_t {aka unsigned int} 2025-09-06T06:41:00,825 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:41:00,825 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:41:00,825 | ~~^ 2025-09-06T06:41:00,825 | | 2025-09-06T06:41:00,825 | long unsigned int 2025-09-06T06:41:00,825 | %u 2025-09-06T06:41:00,825 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:41:00,825 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:41:00,825 | ~~~~~~~~~ 2025-09-06T06:41:00,826 | | 2025-09-06T06:41:00,826 | size_t {aka unsigned int} 2025-09-06T06:41:00,827 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-06T06:41:00,827 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:41:00,827 | ~~^ 2025-09-06T06:41:00,827 | | 2025-09-06T06:41:00,827 | long unsigned int 2025-09-06T06:41:00,827 | %u 2025-09-06T06:41:00,827 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:41:00,827 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:41:00,827 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,828 | | 2025-09-06T06:41:00,828 | unsigned int 2025-09-06T06:41:00,830 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-06T06:41:00,830 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-06T06:41:00,830 | ^ 2025-09-06T06:41:00,837 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-06T06:41:00,839 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:41:00,839 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-06T06:41:00,839 | ~~^ ~~~~~~~ 2025-09-06T06:41:00,840 | | | 2025-09-06T06:41:00,840 | long unsigned int size_t {aka unsigned int} 2025-09-06T06:41:00,840 | %u 2025-09-06T06:41:00,842 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:41:00,842 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-06T06:41:00,842 | ~~^ 2025-09-06T06:41:00,842 | | 2025-09-06T06:41:00,842 | long unsigned int 2025-09-06T06:41:00,842 | %u 2025-09-06T06:41:00,842 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-06T06:41:00,842 | ~~~~~~~~~ 2025-09-06T06:41:00,842 | | 2025-09-06T06:41:00,842 | size_t {aka unsigned int} 2025-09-06T06:41:00,844 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-06T06:41:00,844 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-06T06:41:00,844 | ~~^ 2025-09-06T06:41:00,844 | | 2025-09-06T06:41:00,845 | long unsigned int 2025-09-06T06:41:00,845 | %u 2025-09-06T06:41:00,845 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-06T06:41:00,845 865 | (size_t) b * unitsz_distf_mapped); 2025-09-06T06:41:00,845 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,845 | | 2025-09-06T06:41:00,845 | unsigned int 2025-09-06T06:41:00,847 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-06T06:41:00,847 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-06T06:41:00,847 | ^~~~~~~ 2025-09-06T06:41:00,848 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-06T06:41:00,848 809 | struct stat cbd_fcode_stat; 2025-09-06T06:41:00,848 | ^~~~~~~~~~~~~~ 2025-09-06T06:41:00,849 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-06T06:41:00,849 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-06T06:41:00,849 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,850 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-06T06:41:00,850 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-06T06:41:00,850 | ^~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,857 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-06T06:41:00,859 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:41:00,859 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:41:00,860 | ~~^ 2025-09-06T06:41:00,860 | | 2025-09-06T06:41:00,860 | long unsigned int 2025-09-06T06:41:00,860 | %u 2025-09-06T06:41:00,860 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:41:00,860 | ~~~~~~~ 2025-09-06T06:41:00,860 | | 2025-09-06T06:41:00,860 | size_t {aka unsigned int} 2025-09-06T06:41:00,862 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:41:00,862 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:41:00,862 | ~~^ 2025-09-06T06:41:00,863 | | 2025-09-06T06:41:00,863 | long unsigned int 2025-09-06T06:41:00,863 | %u 2025-09-06T06:41:00,863 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:41:00,863 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:41:00,863 | ~~~~~~~~~ 2025-09-06T06:41:00,863 | | 2025-09-06T06:41:00,863 | size_t {aka unsigned int} 2025-09-06T06:41:00,865 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-06T06:41:00,865 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-06T06:41:00,865 | ~~^ 2025-09-06T06:41:00,866 | | 2025-09-06T06:41:00,866 | long unsigned int 2025-09-06T06:41:00,866 | %u 2025-09-06T06:41:00,866 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-06T06:41:00,866 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-06T06:41:00,866 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:00,866 | | 2025-09-06T06:41:00,866 | unsigned int 2025-09-06T06:41:00,871 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-06T06:41:00,872 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-06T06:41:00,872 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-06T06:41:00,872 | ^ 2025-09-06T06:41:00,874 command_dist.c: In function ‘fname_dist_print’: 2025-09-06T06:41:00,875 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-09-06T06:41:00,875 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-09-06T06:41:00,875 | ^ 2025-09-06T06:41:00,880 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-06T06:41:00,881 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:41:00,882 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-06T06:41:00,882 | ^ 2025-09-06T06:41:00,884 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:41:00,884 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-06T06:41:00,884 | ^ 2025-09-06T06:41:00,890 command_dist.c: In function ‘dist_print_nobin’: 2025-09-06T06:41:00,891 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:41:00,891 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-06T06:41:00,892 | ^ 2025-09-06T06:41:00,894 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:41:00,895 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-06T06:41:00,895 | ^ 2025-09-06T06:41:00,897 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-06T06:41:00,897 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-06T06:41:00,897 | ^ 2025-09-06T06:41:01,288 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-06T06:41:01,288 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-06T06:41:01,288 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-06T06:41:01,288 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:01,289 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-06T06:41:01,289 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-06T06:41:01,289 | ^~~~~~~~~~~~ 2025-09-06T06:41:02,097 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-06T06:41:02,097 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-06T06:41:02,097 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-06T06:41:02,097 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:02,097 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-06T06:41:02,097 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-06T06:41:02,097 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,017 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-06T06:41:03,018 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:03,018 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:41:03,018 | ^~ ~~~~~~~~~ 2025-09-06T06:41:03,019 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-06T06:41:03,019 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:41:03,019 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,020 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:41:03,020 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:41:03,020 | ^~~~~~~~~~~~~~~ 2025-09-06T06:41:03,021 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-06T06:41:03,021 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:41:03,021 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,023 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:41:03,023 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:41:03,023 | ^~~~~~~~~~~ 2025-09-06T06:41:03,024 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:03,024 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:41:03,024 | ^~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,025 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-06T06:41:03,025 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:41:03,025 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,026 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:41:03,026 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:41:03,026 | ^~~~~ 2025-09-06T06:41:03,026 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:03,026 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:41:03,027 | ^~~~~~~~~~~ 2025-09-06T06:41:03,027 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:41:03,027 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:41:03,028 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,275 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-06T06:41:03,277 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:03,277 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:41:03,277 | ^~ ~~~~~~~~~ 2025-09-06T06:41:03,278 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-06T06:41:03,278 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:41:03,278 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,279 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:41:03,279 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:41:03,279 | ^~~~~~~~~~~~~~~ 2025-09-06T06:41:03,280 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-06T06:41:03,280 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:41:03,280 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,281 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:41:03,281 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:41:03,281 | ^~~~~~~~~~~~~ 2025-09-06T06:41:03,282 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-06T06:41:03,282 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:41:03,282 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,283 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:03,284 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-06T06:41:03,284 | ^ 2025-09-06T06:41:03,285 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-06T06:41:03,285 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-06T06:41:03,285 | ^~~~~~~~~~ 2025-09-06T06:41:03,286 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-06T06:41:03,286 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-06T06:41:03,286 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,287 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:03,287 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-06T06:41:03,287 | ^ 2025-09-06T06:41:03,288 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-06T06:41:03,288 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-06T06:41:03,288 | ^~~~~~~~~~ 2025-09-06T06:41:03,289 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-06T06:41:03,289 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-06T06:41:03,289 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,556 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-06T06:41:03,557 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:03,557 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:41:03,558 | ^~ ~~~~~~~~~ 2025-09-06T06:41:03,559 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-06T06:41:03,559 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-06T06:41:03,559 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,560 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:41:03,560 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:41:03,560 | ^~~~~~~~~~~~~~~ 2025-09-06T06:41:03,561 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-06T06:41:03,561 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-06T06:41:03,561 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,563 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:41:03,563 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:41:03,563 | ^~~~~~~~~~~~~ 2025-09-06T06:41:03,564 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-06T06:41:03,564 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-06T06:41:03,564 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,566 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:41:03,566 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:41:03,567 | ^~~~~~~~~~~ 2025-09-06T06:41:03,568 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:03,568 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:41:03,568 | ^~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,569 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-06T06:41:03,569 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-06T06:41:03,569 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,570 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-06T06:41:03,571 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:41:03,571 | ^~~~~ 2025-09-06T06:41:03,572 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:03,572 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:41:03,572 | ^~~~~~~~~~~ 2025-09-06T06:41:03,573 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:41:03,573 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-06T06:41:03,573 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,850 command_dist.c: In function ‘combine_queries’: 2025-09-06T06:41:03,852 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:41:03,852 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-06T06:41:03,852 | ^ 2025-09-06T06:41:03,854 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:41:03,854 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-06T06:41:03,854 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,856 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:41:03,856 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-06T06:41:03,856 | ^ 2025-09-06T06:41:03,858 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:41:03,859 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-06T06:41:03,859 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:03,862 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:03,862 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-06T06:41:03,862 | ^~ ~~~~~~~~ 2025-09-06T06:41:03,864 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-06T06:41:03,864 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-06T06:41:03,864 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:04,352 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-09-06T06:41:04,752 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-09-06T06:41:04,927 command_set.c: In function ‘sketch_operate’: 2025-09-06T06:41:04,928 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-06T06:41:04,928 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-06T06:41:04,928 | ^ 2025-09-06T06:41:04,940 command_set.c: In function ‘combin_subset_pans’: 2025-09-06T06:41:04,941 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-06T06:41:04,941 457 | free(co_dstat_fpath); 2025-09-06T06:41:04,941 | ^~~~~~~~~~~~~~ 2025-09-06T06:41:04,942 In file included from kssdheaders/global_basic.h:159, 2025-09-06T06:41:04,942 from command_set.c:15: 2025-09-06T06:41:04,942 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-06T06:41:04,942 687 | extern void free (void *__ptr) __THROW; 2025-09-06T06:41:04,942 | ~~~~~~^~~~~ 2025-09-06T06:41:04,949 command_set.c: In function ‘grouping_genomes’: 2025-09-06T06:41:04,950 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-06T06:41:04,950 562 | free(co_dstat_fpath); 2025-09-06T06:41:04,950 | ^~~~~~~~~~~~~~ 2025-09-06T06:41:04,950 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-06T06:41:04,950 687 | extern void free (void *__ptr) __THROW; 2025-09-06T06:41:04,950 | ~~~~~~^~~~~ 2025-09-06T06:41:05,126 command_set.c: In function ‘sketch_union’: 2025-09-06T06:41:05,126 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:41:05,126 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,127 | ^ 2025-09-06T06:41:05,127 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:41:05,127 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,127 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,127 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,128 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:41:05,128 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:05,128 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,128 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:41:05,128 | ^~~~~~~~~~ 2025-09-06T06:41:05,129 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:41:05,129 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:41:05,129 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,129 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,129 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-06T06:41:05,129 | ^~ ~~~~~~~~~~ 2025-09-06T06:41:05,130 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,130 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-06T06:41:05,130 | ^~~~~~~~~~ 2025-09-06T06:41:05,130 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:41:05,130 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-06T06:41:05,130 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,261 command_set.c: In function ‘sketch_operate’: 2025-09-06T06:41:05,261 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,261 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-06T06:41:05,262 | ^~ ~~~~~~~~~~ 2025-09-06T06:41:05,262 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,262 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-06T06:41:05,262 | ^~~~~~~~~~ 2025-09-06T06:41:05,263 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-06T06:41:05,263 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-06T06:41:05,263 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,263 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,263 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-06T06:41:05,264 | ^~ ~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,264 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,264 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-06T06:41:05,264 | ^~~~~~~~~~ 2025-09-06T06:41:05,264 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-06T06:41:05,264 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-06T06:41:05,265 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,265 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,265 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:41:05,265 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:05,266 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,266 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:41:05,266 | ^~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,266 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:41:05,266 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:41:05,266 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,267 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,267 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:41:05,267 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:05,267 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,267 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:41:05,268 | ^~~~~~~~~~ 2025-09-06T06:41:05,268 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:41:05,268 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-06T06:41:05,268 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,269 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,269 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:41:05,269 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:05,269 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,269 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:41:05,269 | ^~~~~~~~~~ 2025-09-06T06:41:05,270 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:41:05,270 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:41:05,270 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,270 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,271 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:41:05,271 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:05,271 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,271 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:41:05,271 | ^~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,272 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:41:05,272 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-06T06:41:05,272 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,272 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:41:05,272 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,272 | ^ 2025-09-06T06:41:05,273 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:41:05,273 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,273 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,440 command_set.c: In function ‘uniq_sketch_union’: 2025-09-06T06:41:05,441 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:41:05,441 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-06T06:41:05,441 | ^ 2025-09-06T06:41:05,442 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-09-06T06:41:05,442 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-06T06:41:05,442 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,442 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:41:05,442 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,443 | ^ 2025-09-06T06:41:05,443 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:41:05,443 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,443 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,444 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,444 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:41:05,444 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:05,445 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,445 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:41:05,445 | ^~~~~~~~~~ 2025-09-06T06:41:05,445 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:41:05,446 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-06T06:41:05,446 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,446 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,446 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-06T06:41:05,447 | ^~ ~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,447 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,447 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-06T06:41:05,447 | ^~~~~~~~~~ 2025-09-06T06:41:05,448 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-06T06:41:05,448 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-06T06:41:05,448 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,588 command_set.c: In function ‘combin_pans’: 2025-09-06T06:41:05,589 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,589 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:41:05,589 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:05,590 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-06T06:41:05,590 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:41:05,590 | ^~~~~~~~~~ 2025-09-06T06:41:05,591 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-06T06:41:05,591 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:41:05,591 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,592 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,592 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:41:05,592 | ^~ ~~~~~~~~~~ 2025-09-06T06:41:05,592 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-06T06:41:05,592 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:41:05,593 | ^~~~~~~~~~ 2025-09-06T06:41:05,593 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-06T06:41:05,593 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:41:05,593 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,594 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:41:05,594 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,595 | ^ 2025-09-06T06:41:05,595 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:41:05,595 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,595 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,811 command_set.c: In function ‘combin_subset_pans’: 2025-09-06T06:41:05,812 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,813 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:41:05,813 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:05,814 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,814 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:41:05,814 | ^~~~~~~~~~ 2025-09-06T06:41:05,815 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:41:05,815 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:41:05,815 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,816 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,816 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:41:05,816 | ^~ ~~~~~~~~~~ 2025-09-06T06:41:05,817 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,817 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:41:05,817 | ^~~~~~~~~~ 2025-09-06T06:41:05,818 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:41:05,818 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:41:05,818 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,819 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,819 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:41:05,819 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:05,820 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,820 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:41:05,820 | ^~~~~~~~~~ 2025-09-06T06:41:05,821 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:41:05,821 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:41:05,821 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,822 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:05,823 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:41:05,823 | ^~ ~~~~~~~~~~ 2025-09-06T06:41:05,823 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:05,824 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:41:05,824 | ^~~~~~~~~~ 2025-09-06T06:41:05,824 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:41:05,824 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:41:05,825 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:05,825 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:41:05,826 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,826 | ^ 2025-09-06T06:41:05,827 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:41:05,827 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:05,827 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:06,063 command_set.c: In function ‘grouping_genomes’: 2025-09-06T06:41:06,064 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:06,064 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:41:06,065 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:06,066 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:06,066 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:41:06,066 | ^~~~~~~~~~ 2025-09-06T06:41:06,067 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:41:06,067 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-06T06:41:06,067 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:06,068 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:06,068 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:41:06,068 | ^~ ~~~~~~~~~~ 2025-09-06T06:41:06,069 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:06,069 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:41:06,070 | ^~~~~~~~~~ 2025-09-06T06:41:06,070 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:41:06,070 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-06T06:41:06,071 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:06,072 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:06,072 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:41:06,072 | ^~ ~~~~~~~~~~~ 2025-09-06T06:41:06,073 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:06,073 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:41:06,074 | ^~~~~~~~~~ 2025-09-06T06:41:06,074 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-06T06:41:06,075 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-06T06:41:06,075 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:06,076 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-06T06:41:06,076 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:41:06,076 | ^~ ~~~~~~~~~~ 2025-09-06T06:41:06,077 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-06T06:41:06,078 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:41:06,078 | ^~~~~~~~~~ 2025-09-06T06:41:06,079 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-06T06:41:06,079 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-06T06:41:06,079 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:06,080 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-06T06:41:06,080 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:06,080 | ^ 2025-09-06T06:41:06,081 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-06T06:41:06,081 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-06T06:41:06,081 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-06T06:41:06,358 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-09-06T06:41:06,667 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-09-06T06:41:06,843 global_basic.c: In function ‘organize_infile_list’: 2025-09-06T06:41:06,844 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-06T06:41:06,844 195 | while (isspace(*buf)) buf++; 2025-09-06T06:41:06,844 | ^~~~~~~ 2025-09-06T06:41:06,844 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-09-06T06:41:06,844 34 | #include 2025-09-06T06:41:06,844 +++ |+#include 2025-09-06T06:41:06,844 35 | 2025-09-06T06:41:06,844 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:41:06,844 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-06T06:41:06,845 | ~~^ 2025-09-06T06:41:06,845 | | 2025-09-06T06:41:06,845 | long unsigned int 2025-09-06T06:41:06,845 | %u 2025-09-06T06:41:06,845 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-06T06:41:06,845 | ~~~~~~~~~~~ 2025-09-06T06:41:06,845 | | 2025-09-06T06:41:06,845 | size_t {aka unsigned int} 2025-09-06T06:41:06,846 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-06T06:41:06,846 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-06T06:41:06,846 | ~~^ 2025-09-06T06:41:06,846 | | 2025-09-06T06:41:06,846 | long unsigned int 2025-09-06T06:41:06,846 | %u 2025-09-06T06:41:06,846 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-06T06:41:06,847 | ~~~~~~~~~~~ 2025-09-06T06:41:06,847 | | 2025-09-06T06:41:06,847 | size_t {aka unsigned int} 2025-09-06T06:41:06,866 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-06T06:41:07,013 ERROR: python setup.py bdist_wheel exited with 1 2025-09-06T06:41:07,025 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-06T06:41:07,025 exec(compile('"'"''"'"''"'"' 2025-09-06T06:41:07,025 # This is -- a caller that pip uses to run setup.py 2025-09-06T06:41:07,025 # 2025-09-06T06:41:07,025 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-06T06:41:07,025 # import from `distutils.core` to work with newer packaging standards. 2025-09-06T06:41:07,025 # - It provides a clear error message when setuptools is not installed. 2025-09-06T06:41:07,025 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-06T06:41:07,025 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-06T06:41:07,025 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-06T06:41:07,025 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-06T06:41:07,025 import os, sys, tokenize, traceback 2025-09-06T06:41:07,025 2025-09-06T06:41:07,025 try: 2025-09-06T06:41:07,025 import setuptools 2025-09-06T06:41:07,025 except ImportError: 2025-09-06T06:41:07,025 print( 2025-09-06T06:41:07,025 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-06T06:41:07,025 "the build environment with exception:", 2025-09-06T06:41:07,025 file=sys.stderr, 2025-09-06T06:41:07,025 ) 2025-09-06T06:41:07,025 traceback.print_exc() 2025-09-06T06:41:07,025 sys.exit(1) 2025-09-06T06:41:07,025 2025-09-06T06:41:07,025 __file__ = %r 2025-09-06T06:41:07,025 sys.argv[0] = __file__ 2025-09-06T06:41:07,025 2025-09-06T06:41:07,025 if os.path.exists(__file__): 2025-09-06T06:41:07,025 filename = __file__ 2025-09-06T06:41:07,025 with tokenize.open(__file__) as f: 2025-09-06T06:41:07,025 setup_py_code = f.read() 2025-09-06T06:41:07,025 else: 2025-09-06T06:41:07,025 filename = "" 2025-09-06T06:41:07,025 setup_py_code = "from setuptools import setup; setup()" 2025-09-06T06:41:07,025 2025-09-06T06:41:07,025 exec(compile(setup_py_code, filename, "exec")) 2025-09-06T06:41:07,025 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-9hmez2k7/kssdutils_f2e567cc82644c319278d29bdd0a95f3/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-sv04r68u[/] 2025-09-06T06:41:07,025 [bold magenta]cwd[/]: /tmp/pip-wheel-9hmez2k7/kssdutils_f2e567cc82644c319278d29bdd0a95f3/ 2025-09-06T06:41:07,025 Building wheel for kssdutils (setup.py): finished with status 'error' 2025-09-06T06:41:07,026 ERROR: Failed building wheel for kssdutils 2025-09-06T06:41:07,027 Running setup.py clean for kssdutils 2025-09-06T06:41:07,027 Running command python setup.py clean 2025-09-06T06:41:08,154 running clean 2025-09-06T06:41:08,295 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-06T06:41:08,295 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-06T06:41:08,296 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-06T06:41:08,296 'build/scripts-3.13' does not exist -- can't clean it 2025-09-06T06:41:08,296 removing 'build' 2025-09-06T06:41:08,412 Failed to build kssdutils 2025-09-06T06:41:08,413 ERROR: Failed to build one or more wheels 2025-09-06T06:41:08,413 Exception information: 2025-09-06T06:41:08,413 Traceback (most recent call last): 2025-09-06T06:41:08,413 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-06T06:41:08,413 status = _inner_run() 2025-09-06T06:41:08,413 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-06T06:41:08,413 return self.run(options, args) 2025-09-06T06:41:08,413 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-06T06:41:08,413 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-06T06:41:08,413 return func(self, options, args) 2025-09-06T06:41:08,413 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-06T06:41:08,413 raise CommandError("Failed to build one or more wheels") 2025-09-06T06:41:08,413 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-06T06:41:08,418 Removed build tracker: '/tmp/pip-build-tracker-0u6j4com'