2025-09-07T20:21:36,965 Created temporary directory: /tmp/pip-build-tracker-ajgnonk5
2025-09-07T20:21:36,966 Initialized build tracking at /tmp/pip-build-tracker-ajgnonk5
2025-09-07T20:21:36,966 Created build tracker: /tmp/pip-build-tracker-ajgnonk5
2025-09-07T20:21:36,966 Entered build tracker: /tmp/pip-build-tracker-ajgnonk5
2025-09-07T20:21:36,966 Created temporary directory: /tmp/pip-wheel-z0qc8ms2
2025-09-07T20:21:36,970 Created temporary directory: /tmp/pip-ephem-wheel-cache-k2o9audp
2025-09-07T20:21:37,031 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-07T20:21:37,034 2 location(s) to search for versions of phylosequel:
2025-09-07T20:21:37,034 * https://pypi.org/simple/phylosequel/
2025-09-07T20:21:37,034 * https://www.piwheels.org/simple/phylosequel/
2025-09-07T20:21:37,034 Fetching project page and analyzing links: https://pypi.org/simple/phylosequel/
2025-09-07T20:21:37,035 Getting page https://pypi.org/simple/phylosequel/
2025-09-07T20:21:37,036 Found index url https://pypi.org/simple/
2025-09-07T20:21:37,246 Fetched page https://pypi.org/simple/phylosequel/ as application/vnd.pypi.simple.v1+json
2025-09-07T20:21:37,247   Found link https://files.pythonhosted.org/packages/a4/2e/b128f8bdf3754673044e3e3ace548469e4d707a576a307568dbbb987d25e/PhyloSequel-0.0.1.tar.gz (from https://pypi.org/simple/phylosequel/), version: 0.0.1
2025-09-07T20:21:37,247   Found link https://files.pythonhosted.org/packages/ed/09/fd80396db0d1080d4f80487fff6b32f5c74089f884e67fe680f950bc9993/PhyloSequel-0.0.2.tar.gz (from https://pypi.org/simple/phylosequel/), version: 0.0.2
2025-09-07T20:21:37,248 Fetching project page and analyzing links: https://www.piwheels.org/simple/phylosequel/
2025-09-07T20:21:37,248 Getting page https://www.piwheels.org/simple/phylosequel/
2025-09-07T20:21:37,249 Found index url https://www.piwheels.org/simple/
2025-09-07T20:21:37,339 Fetched page https://www.piwheels.org/simple/phylosequel/ as text/html
2025-09-07T20:21:37,339 Skipping link: not a file: https://www.piwheels.org/simple/phylosequel/
2025-09-07T20:21:37,340 Skipping link: not a file: https://pypi.org/simple/phylosequel/
2025-09-07T20:21:37,364 Given no hashes to check 1 links for project 'phylosequel': discarding no candidates
2025-09-07T20:21:37,365 Collecting phylosequel==0.0.1
2025-09-07T20:21:37,367   Created temporary directory: /tmp/pip-unpack-mzgqlm15
2025-09-07T20:21:37,509   Downloading PhyloSequel-0.0.1.tar.gz (13 kB)
2025-09-07T20:21:37,537   Added phylosequel==0.0.1 from https://files.pythonhosted.org/packages/a4/2e/b128f8bdf3754673044e3e3ace548469e4d707a576a307568dbbb987d25e/PhyloSequel-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-ajgnonk5'
2025-09-07T20:21:37,538   Running setup.py (path:/tmp/pip-wheel-z0qc8ms2/phylosequel_0c5b1a3191804861ba42a7684602299c/setup.py) egg_info for package phylosequel
2025-09-07T20:21:37,538   Created temporary directory: /tmp/pip-pip-egg-info-svcix6ty
2025-09-07T20:21:37,538   Preparing metadata (setup.py): started
2025-09-07T20:21:37,539   Running command python setup.py egg_info
2025-09-07T20:21:38,096   /tmp/pip-wheel-z0qc8ms2/phylosequel_0c5b1a3191804861ba42a7684602299c/setup.py:43: SyntaxWarning: invalid escape sequence '\ '
2025-09-07T20:21:38,097     description="""\
2025-09-07T20:21:38,101   Traceback (most recent call last):
2025-09-07T20:21:38,103     File "<string>", line 2, in <module>
2025-09-07T20:21:38,103       exec(compile('''
2025-09-07T20:21:38,103       ~~~~^^^^^^^^^^^^
2025-09-07T20:21:38,103       # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-07T20:21:38,104       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,104       ...<32 lines>...
2025-09-07T20:21:38,104       exec(compile(setup_py_code, filename, "exec"))
2025-09-07T20:21:38,104       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,104       ''' % ('/tmp/pip-wheel-z0qc8ms2/phylosequel_0c5b1a3191804861ba42a7684602299c/setup.py',), "<pip-setuptools-caller>", "exec"))
2025-09-07T20:21:38,104       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,105     File "<pip-setuptools-caller>", line 35, in <module>
2025-09-07T20:21:38,105     File "/tmp/pip-wheel-z0qc8ms2/phylosequel_0c5b1a3191804861ba42a7684602299c/setup.py", line 29, in <module>
2025-09-07T20:21:38,105       import ez_setup
2025-09-07T20:21:38,105     File "/tmp/pip-wheel-z0qc8ms2/phylosequel_0c5b1a3191804861ba42a7684602299c/ez_setup.py", line 97
2025-09-07T20:21:38,105       except pkg_resources.VersionConflict, e:
2025-09-07T20:21:38,105              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,106   SyntaxError: multiple exception types must be parenthesized
2025-09-07T20:21:38,202   ERROR: python setup.py egg_info exited with 1
2025-09-07T20:21:38,215   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2025-09-07T20:21:38,215   exec(compile('"'"''"'"''"'"'
2025-09-07T20:21:38,215   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-07T20:21:38,215   #
2025-09-07T20:21:38,215   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-07T20:21:38,215   #   import from `distutils.core` to work with newer packaging standards.
2025-09-07T20:21:38,215   # - It provides a clear error message when setuptools is not installed.
2025-09-07T20:21:38,215   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-07T20:21:38,215   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-07T20:21:38,215   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-07T20:21:38,215   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-07T20:21:38,215   import os, sys, tokenize, traceback
2025-09-07T20:21:38,215   
2025-09-07T20:21:38,215   try:
2025-09-07T20:21:38,215       import setuptools
2025-09-07T20:21:38,215   except ImportError:
2025-09-07T20:21:38,215       print(
2025-09-07T20:21:38,215           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-07T20:21:38,215           "the build environment with exception:",
2025-09-07T20:21:38,215           file=sys.stderr,
2025-09-07T20:21:38,215       )
2025-09-07T20:21:38,215       traceback.print_exc()
2025-09-07T20:21:38,215       sys.exit(1)
2025-09-07T20:21:38,215   
2025-09-07T20:21:38,215   __file__ = %r
2025-09-07T20:21:38,215   sys.argv[0] = __file__
2025-09-07T20:21:38,215   
2025-09-07T20:21:38,215   if os.path.exists(__file__):
2025-09-07T20:21:38,215       filename = __file__
2025-09-07T20:21:38,215       with tokenize.open(__file__) as f:
2025-09-07T20:21:38,215           setup_py_code = f.read()
2025-09-07T20:21:38,215   else:
2025-09-07T20:21:38,215       filename = "<auto-generated setuptools caller>"
2025-09-07T20:21:38,215       setup_py_code = "from setuptools import setup; setup()"
2025-09-07T20:21:38,215   
2025-09-07T20:21:38,215   exec(compile(setup_py_code, filename, "exec"))
2025-09-07T20:21:38,215   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-z0qc8ms2/phylosequel_0c5b1a3191804861ba42a7684602299c/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-svcix6ty[/]
2025-09-07T20:21:38,215   [bold magenta]cwd[/]: /tmp/pip-wheel-z0qc8ms2/phylosequel_0c5b1a3191804861ba42a7684602299c/
2025-09-07T20:21:38,215   Preparing metadata (setup.py): finished with status 'error'
2025-09-07T20:21:38,216 ERROR: metadata generation failed
2025-09-07T20:21:38,222 Exception information:
2025-09-07T20:21:38,222 Traceback (most recent call last):
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata
2025-09-07T20:21:38,222     call_subprocess(
2025-09-07T20:21:38,222     ~~~~~~~~~~~~~~~^
2025-09-07T20:21:38,222         args,
2025-09-07T20:21:38,222         ^^^^^
2025-09-07T20:21:38,222     ...<2 lines>...
2025-09-07T20:21:38,222         spinner=spinner,
2025-09-07T20:21:38,222         ^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222     )
2025-09-07T20:21:38,222     ^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess
2025-09-07T20:21:38,222     raise error
2025-09-07T20:21:38,222 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2025-09-07T20:21:38,222 
2025-09-07T20:21:38,222 The above exception was the direct cause of the following exception:
2025-09-07T20:21:38,222 
2025-09-07T20:21:38,222 Traceback (most recent call last):
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-07T20:21:38,222     status = _inner_run()
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-07T20:21:38,222     return self.run(options, args)
2025-09-07T20:21:38,222            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-07T20:21:38,222     return func(self, options, args)
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2025-09-07T20:21:38,222     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve
2025-09-07T20:21:38,222     result = self._result = resolver.resolve(
2025-09-07T20:21:38,222                             ~~~~~~~~~~~~~~~~^
2025-09-07T20:21:38,222         collected.requirements, max_rounds=limit_how_complex_resolution_can_be
2025-09-07T20:21:38,222         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222     )
2025-09-07T20:21:38,222     ^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve
2025-09-07T20:21:38,222     state = resolution.resolve(requirements, max_rounds=max_rounds)
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve
2025-09-07T20:21:38,222     self._add_to_criteria(self.state.criteria, r, parent=None)
2025-09-07T20:21:38,222     ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria
2025-09-07T20:21:38,222     if not criterion.candidates:
2025-09-07T20:21:38,222            ^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__
2025-09-07T20:21:38,222     return bool(self._sequence)
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__
2025-09-07T20:21:38,222     self._bool = any(self)
2025-09-07T20:21:38,222                  ~~~^^^^^^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in <genexpr>
2025-09-07T20:21:38,222     return (c for c in iterator if id(c) not in self._incompatible_ids)
2025-09-07T20:21:38,222                        ^^^^^^^^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built
2025-09-07T20:21:38,222     candidate = func()
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link
2025-09-07T20:21:38,222     base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
2025-09-07T20:21:38,222                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-07T20:21:38,222         link, template, name, version
2025-09-07T20:21:38,222         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222     )
2025-09-07T20:21:38,222     ^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link
2025-09-07T20:21:38,222     self._link_candidate_cache[link] = LinkCandidate(
2025-09-07T20:21:38,222                                        ~~~~~~~~~~~~~^
2025-09-07T20:21:38,222         link,
2025-09-07T20:21:38,222         ^^^^^
2025-09-07T20:21:38,222     ...<3 lines>...
2025-09-07T20:21:38,222         version=version,
2025-09-07T20:21:38,222         ^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222     )
2025-09-07T20:21:38,222     ^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__
2025-09-07T20:21:38,222     super().__init__(
2025-09-07T20:21:38,222     ~~~~~~~~~~~~~~~~^
2025-09-07T20:21:38,222         link=link,
2025-09-07T20:21:38,222         ^^^^^^^^^^
2025-09-07T20:21:38,222     ...<4 lines>...
2025-09-07T20:21:38,222         version=version,
2025-09-07T20:21:38,222         ^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222     )
2025-09-07T20:21:38,222     ^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__
2025-09-07T20:21:38,222     self.dist = self._prepare()
2025-09-07T20:21:38,222                 ~~~~~~~~~~~~~^^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare
2025-09-07T20:21:38,222     dist = self._prepare_distribution()
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution
2025-09-07T20:21:38,222     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2025-09-07T20:21:38,222            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement
2025-09-07T20:21:38,222     return self._prepare_linked_requirement(req, parallel_builds)
2025-09-07T20:21:38,222            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement
2025-09-07T20:21:38,222     dist = _get_prepared_distribution(
2025-09-07T20:21:38,222         req,
2025-09-07T20:21:38,222     ...<3 lines>...
2025-09-07T20:21:38,222         self.check_build_deps,
2025-09-07T20:21:38,222     )
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution
2025-09-07T20:21:38,222     abstract_dist.prepare_distribution_metadata(
2025-09-07T20:21:38,222     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-07T20:21:38,222         finder, build_isolation, check_build_deps
2025-09-07T20:21:38,222         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222     )
2025-09-07T20:21:38,222     ^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata
2025-09-07T20:21:38,222     self.req.prepare_metadata()
2025-09-07T20:21:38,222     ~~~~~~~~~~~~~~~~~~~~~~~~~^^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata
2025-09-07T20:21:38,222     self.metadata_directory = generate_metadata_legacy(
2025-09-07T20:21:38,222                               ~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-07T20:21:38,222         build_env=self.build_env,
2025-09-07T20:21:38,222         ^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222     ...<3 lines>...
2025-09-07T20:21:38,222         details=details,
2025-09-07T20:21:38,222         ^^^^^^^^^^^^^^^^
2025-09-07T20:21:38,222     )
2025-09-07T20:21:38,222     ^
2025-09-07T20:21:38,222   File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata
2025-09-07T20:21:38,222     raise MetadataGenerationFailed(package_details=details) from error
2025-09-07T20:21:38,222 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2025-09-07T20:21:38,248 Removed phylosequel==0.0.1 from https://files.pythonhosted.org/packages/a4/2e/b128f8bdf3754673044e3e3ace548469e4d707a576a307568dbbb987d25e/PhyloSequel-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-ajgnonk5'
2025-09-07T20:21:38,248 Removed build tracker: '/tmp/pip-build-tracker-ajgnonk5'