2025-09-07T20:29:03,202 Created temporary directory: /tmp/pip-build-tracker-u4j7eqg7 2025-09-07T20:29:03,203 Initialized build tracking at /tmp/pip-build-tracker-u4j7eqg7 2025-09-07T20:29:03,203 Created build tracker: /tmp/pip-build-tracker-u4j7eqg7 2025-09-07T20:29:03,204 Entered build tracker: /tmp/pip-build-tracker-u4j7eqg7 2025-09-07T20:29:03,204 Created temporary directory: /tmp/pip-wheel-nk9p5xso 2025-09-07T20:29:03,207 Created temporary directory: /tmp/pip-ephem-wheel-cache-zko2nik1 2025-09-07T20:29:03,267 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-07T20:29:03,269 2 location(s) to search for versions of nwalign: 2025-09-07T20:29:03,269 * https://pypi.org/simple/nwalign/ 2025-09-07T20:29:03,269 * https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:29:03,270 Fetching project page and analyzing links: https://pypi.org/simple/nwalign/ 2025-09-07T20:29:03,270 Getting page https://pypi.org/simple/nwalign/ 2025-09-07T20:29:03,272 Found index url https://pypi.org/simple/ 2025-09-07T20:29:03,347 Fetched page https://pypi.org/simple/nwalign/ as application/vnd.pypi.simple.v1+json 2025-09-07T20:29:03,348 Found link https://files.pythonhosted.org/packages/c8/26/9ca7ef2ddd1680a8a56c8b9c04f0b97f6c5a4b1fdd32f4795022317823a8/nwalign-0.1.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1 2025-09-07T20:29:03,349 Found link https://files.pythonhosted.org/packages/a1/c8/1e9a68782c95d700d695c8b1f3a8934e1072e8ed60491e430896b834f961/nwalign-0.1.1.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1.1 2025-09-07T20:29:03,349 Found link https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1.2 2025-09-07T20:29:03,349 Found link https://files.pythonhosted.org/packages/e4/56/1e74d542efb45570042356a81bbad81cc6adc23bb4d5fcf6fd642ec2658b/nwalign-0.1.3.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1.3 2025-09-07T20:29:03,350 Found link https://files.pythonhosted.org/packages/5d/35/f962c0a6d870ea7ff96ba2465b276054192d36597cee2832972a0736bbb1/nwalign-0.2.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.2 2025-09-07T20:29:03,350 Found link https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.3.0 2025-09-07T20:29:03,350 Found link https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.3.1 2025-09-07T20:29:03,351 Fetching project page and analyzing links: https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:29:03,351 Getting page https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:29:03,352 Found index url https://www.piwheels.org/simple/ 2025-09-07T20:29:03,438 Fetched page https://www.piwheels.org/simple/nwalign/ as text/html 2025-09-07T20:29:03,447 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp35-cp35m-linux_armv7l.whl#sha256=0e50aba5718a22fcc30c7d356e6cbca9f721c91d12ab32e7778624dca0940847 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,447 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp35-cp35m-linux_armv6l.whl#sha256=0e50aba5718a22fcc30c7d356e6cbca9f721c91d12ab32e7778624dca0940847 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,447 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp34-cp34m-linux_armv7l.whl#sha256=ae6113c797139e0f35a03f3ff8af1b2ff22e983e866116804cdb2e04fcf66cf2 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,447 Skipping link: No binaries permitted for nwalign: 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(from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,448 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp39-cp39-linux_armv7l.whl#sha256=08fb1551c85e0ecfdd72b0c2f3e03b9a0de96b8531202e5ff0b2b6fa1a560e43 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,448 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp34-cp34m-linux_armv7l.whl#sha256=0f9707e25f4cca1595233e0e171c833a750fad16671b0c75c995f09e74df93fe (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,448 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp34-cp34m-linux_armv6l.whl#sha256=0f9707e25f4cca1595233e0e171c833a750fad16671b0c75c995f09e74df93fe (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,448 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp35-cp35m-linux_armv6l.whl#sha256=9fe5f8af4faf081bd4d7dfc0da41ae486a23ad9ddef3babde9a69aac66a79c7d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,448 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp35-cp35m-linux_armv7l.whl#sha256=9fe5f8af4faf081bd4d7dfc0da41ae486a23ad9ddef3babde9a69aac66a79c7d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,449 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=010fa2e332fb1fd47241b2995a9ac6870c79da5db8e9f414f16deafd5c3e94c0 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,449 Skipping link: No binaries permitted for nwalign: 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(from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,449 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp35-cp35m-linux_armv6l.whl#sha256=51218ba0b2cac7da2369f816741091a1ca6655f6803e0ee1cb1cb78d1433f306 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,449 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp34-cp34m-linux_armv7l.whl#sha256=f87e3ddff26114d9035b65a473f6c962e80a383b56607581149c97e329b3160a (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,450 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp34-cp34m-linux_armv6l.whl#sha256=f87e3ddff26114d9035b65a473f6c962e80a383b56607581149c97e329b3160a (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,450 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp37-cp37m-linux_armv7l.whl#sha256=f8cf67c435c305698af9aaea9170c1a6e255630b6589b6409d2c2b633939c01e (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,450 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp37-cp37m-linux_armv6l.whl#sha256=f8cf67c435c305698af9aaea9170c1a6e255630b6589b6409d2c2b633939c01e (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,450 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp39-cp39-linux_armv6l.whl#sha256=631f718358e76db5bc00a55370722902bb2031198826fbaf7a18f644c9a9e35f (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,450 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp39-cp39-linux_armv7l.whl#sha256=631f718358e76db5bc00a55370722902bb2031198826fbaf7a18f644c9a9e35f (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,450 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp35-cp35m-linux_armv7l.whl#sha256=e65315f5a29a7907ad4e0c9e28f2c81cd8f2a401632c114520ef48eaed3aa67d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,450 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp35-cp35m-linux_armv6l.whl#sha256=e65315f5a29a7907ad4e0c9e28f2c81cd8f2a401632c114520ef48eaed3aa67d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,451 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp34-cp34m-linux_armv7l.whl#sha256=059f73659cca427340d71fee5bfdf4e6479b7ba5ca5cd884941a1fa939573541 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,451 Skipping link: No binaries permitted for nwalign: 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https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.2-cp34-cp34m-linux_armv7l.whl#sha256=43be14b0f5dfcd08d82b07636ce240399e1daaff6888cef7d9a902d38cfec888 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,451 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.2-cp34-cp34m-linux_armv6l.whl#sha256=43be14b0f5dfcd08d82b07636ce240399e1daaff6888cef7d9a902d38cfec888 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,451 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp34-cp34m-linux_armv7l.whl#sha256=0c8103577d0ab325258569e3f899576b2aa71d77af8cb6f3bee13aaa92370e63 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,452 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp34-cp34m-linux_armv6l.whl#sha256=0c8103577d0ab325258569e3f899576b2aa71d77af8cb6f3bee13aaa92370e63 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,452 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp35-cp35m-linux_armv6l.whl#sha256=05231f91c31665fc5a1c4039f2e36013fd1b49b5f38108f750af1aaf8858179b (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,452 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp35-cp35m-linux_armv7l.whl#sha256=05231f91c31665fc5a1c4039f2e36013fd1b49b5f38108f750af1aaf8858179b (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,452 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp35-cp35m-linux_armv7l.whl#sha256=6d0d1ff20e0a0cf071f3edb683e564e5795b6f14f356bde26acdd74fc0eb9d30 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,452 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp35-cp35m-linux_armv6l.whl#sha256=6d0d1ff20e0a0cf071f3edb683e564e5795b6f14f356bde26acdd74fc0eb9d30 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,452 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp34-cp34m-linux_armv7l.whl#sha256=33f737806954650dec90b3e358b6ef762bb5757b3184c24e8769b0feb3d4f5e1 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,452 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp34-cp34m-linux_armv6l.whl#sha256=33f737806954650dec90b3e358b6ef762bb5757b3184c24e8769b0feb3d4f5e1 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:29:03,453 Skipping link: not a file: https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:29:03,453 Skipping link: not a file: https://pypi.org/simple/nwalign/ 2025-09-07T20:29:03,478 Given no hashes to check 1 links for project 'nwalign': discarding no candidates 2025-09-07T20:29:03,479 Collecting nwalign==0.1.3 2025-09-07T20:29:03,480 Created temporary directory: /tmp/pip-unpack-6t8r3ley 2025-09-07T20:29:03,620 Downloading nwalign-0.1.3.tar.gz (44 kB) 2025-09-07T20:29:03,651 Added nwalign==0.1.3 from https://files.pythonhosted.org/packages/e4/56/1e74d542efb45570042356a81bbad81cc6adc23bb4d5fcf6fd642ec2658b/nwalign-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-u4j7eqg7' 2025-09-07T20:29:03,653 Running setup.py (path:/tmp/pip-wheel-nk9p5xso/nwalign_99548950c9df47fd913f35a4abb1f537/setup.py) egg_info for package nwalign 2025-09-07T20:29:03,653 Created temporary directory: /tmp/pip-pip-egg-info-ix49vqo3 2025-09-07T20:29:03,653 Preparing metadata (setup.py): started 2025-09-07T20:29:03,654 Running command python setup.py egg_info 2025-09-07T20:29:04,875 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-07T20:29:04,875 warnings.warn(msg) 2025-09-07T20:29:05,330 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T20:29:05,330 !! 2025-09-07T20:29:05,331 ******************************************************************************** 2025-09-07T20:29:05,331 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T20:29:05,331 License :: OSI Approved :: BSD License 2025-09-07T20:29:05,331 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T20:29:05,331 ******************************************************************************** 2025-09-07T20:29:05,331 !! 2025-09-07T20:29:05,332 self._finalize_license_expression() 2025-09-07T20:29:05,431 running egg_info 2025-09-07T20:29:05,575 creating /tmp/pip-pip-egg-info-ix49vqo3/nwalign.egg-info 2025-09-07T20:29:05,576 writing /tmp/pip-pip-egg-info-ix49vqo3/nwalign.egg-info/PKG-INFO 2025-09-07T20:29:05,579 writing dependency_links to /tmp/pip-pip-egg-info-ix49vqo3/nwalign.egg-info/dependency_links.txt 2025-09-07T20:29:05,580 writing entry points to /tmp/pip-pip-egg-info-ix49vqo3/nwalign.egg-info/entry_points.txt 2025-09-07T20:29:05,582 writing requirements to /tmp/pip-pip-egg-info-ix49vqo3/nwalign.egg-info/requires.txt 2025-09-07T20:29:05,583 writing top-level names to /tmp/pip-pip-egg-info-ix49vqo3/nwalign.egg-info/top_level.txt 2025-09-07T20:29:05,583 writing manifest file '/tmp/pip-pip-egg-info-ix49vqo3/nwalign.egg-info/SOURCES.txt' 2025-09-07T20:29:05,882 reading manifest file '/tmp/pip-pip-egg-info-ix49vqo3/nwalign.egg-info/SOURCES.txt' 2025-09-07T20:29:05,885 writing manifest file '/tmp/pip-pip-egg-info-ix49vqo3/nwalign.egg-info/SOURCES.txt' 2025-09-07T20:29:06,041 Preparing metadata (setup.py): finished with status 'done' 2025-09-07T20:29:06,046 Source in /tmp/pip-wheel-nk9p5xso/nwalign_99548950c9df47fd913f35a4abb1f537 has version 0.1.3, which satisfies requirement nwalign==0.1.3 from https://files.pythonhosted.org/packages/e4/56/1e74d542efb45570042356a81bbad81cc6adc23bb4d5fcf6fd642ec2658b/nwalign-0.1.3.tar.gz 2025-09-07T20:29:06,046 Removed nwalign==0.1.3 from https://files.pythonhosted.org/packages/e4/56/1e74d542efb45570042356a81bbad81cc6adc23bb4d5fcf6fd642ec2658b/nwalign-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-u4j7eqg7' 2025-09-07T20:29:06,050 Created temporary directory: /tmp/pip-unpack-1nhrv3fj 2025-09-07T20:29:06,051 Created temporary directory: /tmp/pip-unpack-z35p413p 2025-09-07T20:29:06,051 Building wheels for collected packages: nwalign 2025-09-07T20:29:06,052 Created temporary directory: /tmp/pip-wheel-m1ria6eo 2025-09-07T20:29:06,053 DEPRECATION: Building 'nwalign' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'nwalign'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-07T20:29:06,054 Building wheel for nwalign (setup.py): started 2025-09-07T20:29:06,055 Destination directory: /tmp/pip-wheel-m1ria6eo 2025-09-07T20:29:06,055 Running command python setup.py bdist_wheel 2025-09-07T20:29:07,200 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-07T20:29:07,200 warnings.warn(msg) 2025-09-07T20:29:07,634 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T20:29:07,634 !! 2025-09-07T20:29:07,634 ******************************************************************************** 2025-09-07T20:29:07,634 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T20:29:07,634 License :: OSI Approved :: BSD License 2025-09-07T20:29:07,635 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T20:29:07,635 ******************************************************************************** 2025-09-07T20:29:07,635 !! 2025-09-07T20:29:07,635 self._finalize_license_expression() 2025-09-07T20:29:07,635 running bdist_wheel 2025-09-07T20:29:08,074 running build 2025-09-07T20:29:08,074 running build_ext 2025-09-07T20:29:08,423 building 'nwalign' extension 2025-09-07T20:29:08,424 creating build/temp.linux-armv7l-cpython-313 2025-09-07T20:29:08,424 arm-linux-gnueabihf-gcc -O3 -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I. -I/usr/include/python3.13 -c nwalign.c -o build/temp.linux-armv7l-cpython-313/nwalign.o 2025-09-07T20:29:08,948 nwalign.c: In function ‘__pyx_pf_7nwalign_read_matrix’: 2025-09-07T20:29:08,951 nwalign.c:1390:15: error: implicit declaration of function ‘PyEval_CallObjectWithKeywords’ [-Wimplicit-function-declaration] 2025-09-07T20:29:08,952 1390 | __pyx_t_6 = PyEval_CallObjectWithKeywords(((PyObject *)((PyObject*)__pyx_ptype_5numpy_ndarray)), ((PyObject *)__pyx_t_2), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 101; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:08,952 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:29:08,953 nwalign.c:1390:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:08,954 1390 | __pyx_t_6 = PyEval_CallObjectWithKeywords(((PyObject *)((PyObject*)__pyx_ptype_5numpy_ndarray)), ((PyObject *)__pyx_t_2), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 101; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:08,954 | ^ 2025-09-07T20:29:08,967 nwalign.c: In function ‘__pyx_f_7nwalign_global_align’: 2025-09-07T20:29:08,968 nwalign.c:2012:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:08,968 2012 | __pyx_t_5 = PyEval_CallObjectWithKeywords(__pyx_t_2, ((PyObject *)__pyx_t_4), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 152; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:08,969 | ^ 2025-09-07T20:29:08,972 nwalign.c:2070:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:08,972 2070 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_5, ((PyObject *)__pyx_t_2), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 153; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:08,972 | ^ 2025-09-07T20:29:08,976 nwalign.c:2128:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:08,976 2128 | __pyx_t_4 = PyEval_CallObjectWithKeywords(__pyx_t_3, ((PyObject *)__pyx_t_5), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 154; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:08,976 | ^ 2025-09-07T20:29:08,987 nwalign.c:2366:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:08,988 2366 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_4, ((PyObject *)__pyx_t_2), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 169; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:08,988 | ^ 2025-09-07T20:29:08,992 nwalign.c:2424:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:08,992 2424 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_5, ((PyObject *)__pyx_t_4), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 170; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:08,992 | ^ 2025-09-07T20:29:09,019 nwalign.c:2640:26: error: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2025-09-07T20:29:09,019 2640 | __pyx_t_26 = PyString_FromStringAndSize((&__pyx_v_ci), ((size_t)1)); 2025-09-07T20:29:09,019 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:29:09,019 | PyBytes_FromStringAndSize 2025-09-07T20:29:09,021 nwalign.c:2640:24: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,021 2640 | __pyx_t_26 = PyString_FromStringAndSize((&__pyx_v_ci), ((size_t)1)); 2025-09-07T20:29:09,021 | ^ 2025-09-07T20:29:09,025 nwalign.c:2705:24: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,025 2705 | __pyx_t_26 = PyString_FromStringAndSize((&__pyx_v_cj), ((size_t)1)); 2025-09-07T20:29:09,026 | ^ 2025-09-07T20:29:09,033 nwalign.c:3037:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,033 3037 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2025-09-07T20:29:09,033 | ^ 2025-09-07T20:29:09,035 nwalign.c:3046:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,036 3046 | __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2025-09-07T20:29:09,036 | ^ 2025-09-07T20:29:09,060 nwalign.c:3055:21: error: implicit declaration of function ‘PyString_AS_STRING’; did you mean ‘PyBytes_AS_STRING’? [-Wimplicit-function-declaration] 2025-09-07T20:29:09,060 3055 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2025-09-07T20:29:09,060 | ^~~~~~~~~~~~~~~~~~ 2025-09-07T20:29:09,060 | PyBytes_AS_STRING 2025-09-07T20:29:09,062 nwalign.c:3055:19: error: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,063 3055 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2025-09-07T20:29:09,063 | ^ 2025-09-07T20:29:09,065 nwalign.c:3064:19: error: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,065 3064 | __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai); 2025-09-07T20:29:09,065 | ^ 2025-09-07T20:29:09,100 nwalign.c:3268:3: error: implicit declaration of function ‘_PyString_Resize’ [-Wimplicit-function-declaration] 2025-09-07T20:29:09,100 3268 | _PyString_Resize((&__pyx_v_aj), __pyx_v_align_counter); 2025-09-07T20:29:09,100 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:29:09,113 nwalign.c: In function ‘__pyx_pf_7nwalign_main’: 2025-09-07T20:29:09,116 nwalign.c:3568:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,116 3568 | __pyx_t_2 = PyEval_CallObjectWithKeywords(__pyx_t_1, ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 257; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:09,116 | ^ 2025-09-07T20:29:09,120 nwalign.c:3596:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,120 3596 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_2, ((PyObject *)__pyx_t_1), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 260; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:09,120 | ^ 2025-09-07T20:29:09,124 nwalign.c:3623:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,125 3623 | __pyx_t_2 = PyEval_CallObjectWithKeywords(__pyx_t_3, ((PyObject *)__pyx_t_1), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 261; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:09,125 | ^ 2025-09-07T20:29:09,129 nwalign.c:3650:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,129 3650 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_2, ((PyObject *)__pyx_t_1), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 262; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:09,129 | ^ 2025-09-07T20:29:09,133 nwalign.c:3677:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,133 3677 | __pyx_t_2 = PyEval_CallObjectWithKeywords(__pyx_t_3, ((PyObject *)__pyx_t_1), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 263; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:09,133 | ^ 2025-09-07T20:29:09,138 nwalign.c:3711:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,138 3711 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_2, ((PyObject *)__pyx_t_1), ((PyObject *)__pyx_1)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 264; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:09,138 | ^ 2025-09-07T20:29:09,170 nwalign.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-07T20:29:09,175 nwalign.c:4073:69: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-07T20:29:09,176 4073 | __pyx_t_1 = (!PyArray_CHKFLAGS(((PyArrayObject *)__pyx_v_self), NPY_C_CONTIGUOUS)); 2025-09-07T20:29:09,176 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:29:09,176 | PyBUF_C_CONTIGUOUS 2025-09-07T20:29:09,176 nwalign.c:4073:69: note: each undeclared identifier is reported only once for each function it appears in 2025-09-07T20:29:09,206 nwalign.c:4117:69: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-07T20:29:09,206 4117 | __pyx_t_1 = (!PyArray_CHKFLAGS(((PyArrayObject *)__pyx_v_self), NPY_F_CONTIGUOUS)); 2025-09-07T20:29:09,206 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:29:09,206 | PyBUF_F_CONTIGUOUS 2025-09-07T20:29:09,215 nwalign.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-07T20:29:09,220 nwalign.c:4876:40: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-07T20:29:09,220 4876 | if (likely(((PyObject *)__pyx_v_descr->names) != Py_None)) { 2025-09-07T20:29:09,220 | ^~ 2025-09-07T20:29:09,220 nwalign.c:247:41: note: in definition of macro ‘likely’ 2025-09-07T20:29:09,220 247 | #define likely(x) __builtin_expect(!!(x), 1) 2025-09-07T20:29:09,220 | ^ 2025-09-07T20:29:09,225 nwalign.c:4877:58: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-07T20:29:09,225 4877 | __pyx_t_1 = 0; __pyx_t_2 = ((PyObject *)__pyx_v_descr->names); __Pyx_INCREF(__pyx_t_2); 2025-09-07T20:29:09,225 | ^~ 2025-09-07T20:29:09,230 nwalign.c:4895:45: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-07T20:29:09,231 4895 | __pyx_1 = PyObject_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (!__pyx_1) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 702; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:29:09,231 | ^~ 2025-09-07T20:29:09,240 nwalign.c:5078:41: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-07T20:29:09,240 5078 | (__pyx_v_offset[0]) += __pyx_v_child->elsize; 2025-09-07T20:29:09,240 | ^~ 2025-09-07T20:29:09,278 nwalign.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-07T20:29:09,287 nwalign.c:5934:25: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-07T20:29:09,287 5934 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2025-09-07T20:29:09,287 | ^~~~~~~~~~~~~~~~~~ 2025-09-07T20:29:09,287 | PyDict_GET_SIZE 2025-09-07T20:29:09,296 nwalign.c: In function ‘__Pyx_ErrRestore’: 2025-09-07T20:29:09,305 nwalign.c:6454:18: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-07T20:29:09,306 6454 | if ((tstate->exc_type != NULL) & (tstate->exc_type != Py_None)) { 2025-09-07T20:29:09,306 | ^~~~~~~~ 2025-09-07T20:29:09,306 | exc_state 2025-09-07T20:29:09,316 nwalign.c:6454:47: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-07T20:29:09,316 6454 | if ((tstate->exc_type != NULL) & (tstate->exc_type != Py_None)) { 2025-09-07T20:29:09,316 | ^~~~~~~~ 2025-09-07T20:29:09,316 | exc_state 2025-09-07T20:29:09,326 nwalign.c:6455:28: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-07T20:29:09,327 6455 | tmp_type = tstate->exc_type; 2025-09-07T20:29:09,327 | ^~~~~~~~ 2025-09-07T20:29:09,327 | exc_state 2025-09-07T20:29:09,333 nwalign.c:6456:27: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-07T20:29:09,333 6456 | tmp_value = tstate->exc_value; 2025-09-07T20:29:09,333 | ^~ 2025-09-07T20:29:09,339 nwalign.c:6457:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-07T20:29:09,339 6457 | tmp_tb = tstate->exc_traceback; 2025-09-07T20:29:09,340 | ^~ 2025-09-07T20:29:09,348 nwalign.c:6460:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-07T20:29:09,349 6460 | tstate->exc_type = 0; 2025-09-07T20:29:09,349 | ^~~~~~~~ 2025-09-07T20:29:09,349 | exc_state 2025-09-07T20:29:09,355 nwalign.c:6461:15: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-07T20:29:09,356 6461 | tstate->exc_value = 0; 2025-09-07T20:29:09,356 | ^~ 2025-09-07T20:29:09,364 nwalign.c:6462:15: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-07T20:29:09,364 6462 | tstate->exc_traceback = 0; 2025-09-07T20:29:09,364 | ^~ 2025-09-07T20:29:09,370 nwalign.c:6469:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:29:09,371 6469 | tmp_type = tstate->curexc_type; 2025-09-07T20:29:09,371 | ^~ 2025-09-07T20:29:09,377 nwalign.c:6470:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:29:09,377 6470 | tmp_value = tstate->curexc_value; 2025-09-07T20:29:09,377 | ^~ 2025-09-07T20:29:09,383 nwalign.c:6471:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:29:09,383 6471 | tmp_tb = tstate->curexc_traceback; 2025-09-07T20:29:09,384 | ^~ 2025-09-07T20:29:09,390 nwalign.c:6472:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:29:09,390 6472 | tstate->curexc_type = type; 2025-09-07T20:29:09,390 | ^~ 2025-09-07T20:29:09,397 nwalign.c:6473:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:29:09,397 6473 | tstate->curexc_value = value; 2025-09-07T20:29:09,397 | ^~ 2025-09-07T20:29:09,404 nwalign.c:6474:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:29:09,404 6474 | tstate->curexc_traceback = tb; 2025-09-07T20:29:09,404 | ^~ 2025-09-07T20:29:09,405 nwalign.c: In function ‘__Pyx_ErrFetch’: 2025-09-07T20:29:09,412 nwalign.c:6482:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:29:09,413 6482 | *type = tstate->curexc_type; 2025-09-07T20:29:09,413 | ^~ 2025-09-07T20:29:09,419 nwalign.c:6483:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:29:09,419 6483 | *value = tstate->curexc_value; 2025-09-07T20:29:09,419 | ^~ 2025-09-07T20:29:09,425 nwalign.c:6484:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:29:09,425 6484 | *tb = tstate->curexc_traceback; 2025-09-07T20:29:09,426 | ^~ 2025-09-07T20:29:09,432 nwalign.c:6486:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:29:09,432 6486 | tstate->curexc_type = 0; 2025-09-07T20:29:09,432 | ^~ 2025-09-07T20:29:09,438 nwalign.c:6487:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:29:09,438 6487 | tstate->curexc_value = 0; 2025-09-07T20:29:09,438 | ^~ 2025-09-07T20:29:09,444 nwalign.c:6488:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:29:09,445 6488 | tstate->curexc_traceback = 0; 2025-09-07T20:29:09,445 | ^~ 2025-09-07T20:29:09,445 nwalign.c: In function ‘__Pyx_GetException’: 2025-09-07T20:29:09,451 nwalign.c:6495:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:29:09,451 6495 | *type = tstate->curexc_type; 2025-09-07T20:29:09,451 | ^~ 2025-09-07T20:29:09,457 nwalign.c:6496:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:29:09,458 6496 | *value = tstate->curexc_value; 2025-09-07T20:29:09,458 | ^~ 2025-09-07T20:29:09,464 nwalign.c:6497:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:29:09,464 6497 | *tb = tstate->curexc_traceback; 2025-09-07T20:29:09,464 | ^~ 2025-09-07T20:29:09,470 nwalign.c:6498:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:29:09,470 6498 | tstate->curexc_type = 0; 2025-09-07T20:29:09,470 | ^~ 2025-09-07T20:29:09,477 nwalign.c:6499:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:29:09,477 6499 | tstate->curexc_value = 0; 2025-09-07T20:29:09,477 | ^~ 2025-09-07T20:29:09,483 nwalign.c:6500:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:29:09,483 6500 | tstate->curexc_traceback = 0; 2025-09-07T20:29:09,483 | ^~ 2025-09-07T20:29:09,492 nwalign.c:6507:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-07T20:29:09,493 6507 | tmp_type = tstate->exc_type; 2025-09-07T20:29:09,493 | ^~~~~~~~ 2025-09-07T20:29:09,493 | exc_state 2025-09-07T20:29:09,499 nwalign.c:6508:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-07T20:29:09,499 6508 | tmp_value = tstate->exc_value; 2025-09-07T20:29:09,499 | ^~ 2025-09-07T20:29:09,505 nwalign.c:6509:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-07T20:29:09,505 6509 | tmp_tb = tstate->exc_traceback; 2025-09-07T20:29:09,505 | ^~ 2025-09-07T20:29:09,514 nwalign.c:6510:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-07T20:29:09,514 6510 | tstate->exc_type = *type; 2025-09-07T20:29:09,515 | ^~~~~~~~ 2025-09-07T20:29:09,515 | exc_state 2025-09-07T20:29:09,521 nwalign.c:6511:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-07T20:29:09,521 6511 | tstate->exc_value = *value; 2025-09-07T20:29:09,521 | ^~ 2025-09-07T20:29:09,527 nwalign.c:6512:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-07T20:29:09,527 6512 | tstate->exc_traceback = *tb; 2025-09-07T20:29:09,527 | ^~ 2025-09-07T20:29:09,528 nwalign.c: In function ‘__Pyx_ExceptionSave’: 2025-09-07T20:29:09,537 nwalign.c:6557:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-07T20:29:09,538 6557 | *type = tstate->exc_type; 2025-09-07T20:29:09,538 | ^~~~~~~~ 2025-09-07T20:29:09,538 | exc_state 2025-09-07T20:29:09,544 nwalign.c:6558:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-07T20:29:09,544 6558 | *value = tstate->exc_value; 2025-09-07T20:29:09,544 | ^~ 2025-09-07T20:29:09,550 nwalign.c:6559:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-07T20:29:09,550 6559 | *tb = tstate->exc_traceback; 2025-09-07T20:29:09,551 | ^~ 2025-09-07T20:29:09,551 nwalign.c: In function ‘__Pyx_ExceptionReset’: 2025-09-07T20:29:09,560 nwalign.c:6568:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-07T20:29:09,560 6568 | tmp_type = tstate->exc_type; 2025-09-07T20:29:09,560 | ^~~~~~~~ 2025-09-07T20:29:09,560 | exc_state 2025-09-07T20:29:09,566 nwalign.c:6569:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-07T20:29:09,566 6569 | tmp_value = tstate->exc_value; 2025-09-07T20:29:09,567 | ^~ 2025-09-07T20:29:09,573 nwalign.c:6570:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-07T20:29:09,573 6570 | tmp_tb = tstate->exc_traceback; 2025-09-07T20:29:09,573 | ^~ 2025-09-07T20:29:09,582 nwalign.c:6571:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-07T20:29:09,582 6571 | tstate->exc_type = type; 2025-09-07T20:29:09,582 | ^~~~~~~~ 2025-09-07T20:29:09,582 | exc_state 2025-09-07T20:29:09,588 nwalign.c:6572:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-07T20:29:09,588 6572 | tstate->exc_value = value; 2025-09-07T20:29:09,589 | ^~ 2025-09-07T20:29:09,595 nwalign.c:6573:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-07T20:29:09,595 6573 | tstate->exc_traceback = tb; 2025-09-07T20:29:09,595 | ^~ 2025-09-07T20:29:09,609 nwalign.c: In function ‘__Pyx_AddTraceback’: 2025-09-07T20:29:09,616 nwalign.c:7285:5: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-07T20:29:09,616 7285 | py_code = PyCode_New( 2025-09-07T20:29:09,616 | ^~~~~~~ 2025-09-07T20:29:09,617 In file included from /usr/include/python3.13/Python.h:101, 2025-09-07T20:29:09,617 from nwalign.c:4: 2025-09-07T20:29:09,617 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-07T20:29:09,617 213 | PyCode_New( 2025-09-07T20:29:09,617 | ^~~~~~~~~~ 2025-09-07T20:29:09,624 nwalign.c:7301:9: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:29:09,624 7301 | __pyx_lineno, /*int firstlineno,*/ 2025-09-07T20:29:09,624 | ^~~~~~~~~~~~ 2025-09-07T20:29:09,624 | | 2025-09-07T20:29:09,624 | int 2025-09-07T20:29:09,624 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-07T20:29:09,625 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-07T20:29:09,625 | ~~~~~~~~~~^ 2025-09-07T20:29:09,631 nwalign.c:7302:9: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-07T20:29:09,631 7302 | __pyx_empty_bytes /*PyObject *lnotab*/ 2025-09-07T20:29:09,631 | ^~~~~~~~~~~~~~~~~ 2025-09-07T20:29:09,631 | | 2025-09-07T20:29:09,631 | PyObject * {aka struct _object *} 2025-09-07T20:29:09,632 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-07T20:29:09,632 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-07T20:29:09,632 | ~~~~^ 2025-09-07T20:29:09,639 nwalign.c:7285:15: error: too few arguments to function ‘PyCode_New’ 2025-09-07T20:29:09,639 7285 | py_code = PyCode_New( 2025-09-07T20:29:09,639 | ^~~~~~~~~~ 2025-09-07T20:29:09,639 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-07T20:29:09,639 213 | PyCode_New( 2025-09-07T20:29:09,640 | ^~~~~~~~~~ 2025-09-07T20:29:09,646 nwalign.c:7312:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-07T20:29:09,647 7312 | py_frame->f_lineno = __pyx_lineno; 2025-09-07T20:29:09,647 | ^~ 2025-09-07T20:29:09,723 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-07T20:29:09,918 ERROR: python setup.py bdist_wheel exited with 1 2025-09-07T20:29:09,933 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-07T20:29:09,933 exec(compile('"'"''"'"''"'"' 2025-09-07T20:29:09,933 # This is -- a caller that pip uses to run setup.py 2025-09-07T20:29:09,933 # 2025-09-07T20:29:09,933 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-07T20:29:09,933 # import from `distutils.core` to work with newer packaging standards. 2025-09-07T20:29:09,933 # - It provides a clear error message when setuptools is not installed. 2025-09-07T20:29:09,933 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-07T20:29:09,933 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-07T20:29:09,933 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-07T20:29:09,933 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-07T20:29:09,933 import os, sys, tokenize, traceback 2025-09-07T20:29:09,933 2025-09-07T20:29:09,933 try: 2025-09-07T20:29:09,933 import setuptools 2025-09-07T20:29:09,933 except ImportError: 2025-09-07T20:29:09,933 print( 2025-09-07T20:29:09,933 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-07T20:29:09,933 "the build environment with exception:", 2025-09-07T20:29:09,933 file=sys.stderr, 2025-09-07T20:29:09,933 ) 2025-09-07T20:29:09,933 traceback.print_exc() 2025-09-07T20:29:09,933 sys.exit(1) 2025-09-07T20:29:09,933 2025-09-07T20:29:09,933 __file__ = %r 2025-09-07T20:29:09,933 sys.argv[0] = __file__ 2025-09-07T20:29:09,933 2025-09-07T20:29:09,933 if os.path.exists(__file__): 2025-09-07T20:29:09,933 filename = __file__ 2025-09-07T20:29:09,933 with tokenize.open(__file__) as f: 2025-09-07T20:29:09,933 setup_py_code = f.read() 2025-09-07T20:29:09,933 else: 2025-09-07T20:29:09,933 filename = "" 2025-09-07T20:29:09,933 setup_py_code = "from setuptools import setup; setup()" 2025-09-07T20:29:09,933 2025-09-07T20:29:09,933 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T20:29:09,933 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-nk9p5xso/nwalign_99548950c9df47fd913f35a4abb1f537/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-m1ria6eo[/] 2025-09-07T20:29:09,933 [bold magenta]cwd[/]: /tmp/pip-wheel-nk9p5xso/nwalign_99548950c9df47fd913f35a4abb1f537/ 2025-09-07T20:29:09,933 Building wheel for nwalign (setup.py): finished with status 'error' 2025-09-07T20:29:09,934 ERROR: Failed building wheel for nwalign 2025-09-07T20:29:09,935 Running setup.py clean for nwalign 2025-09-07T20:29:09,936 Running command python setup.py clean 2025-09-07T20:29:10,914 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-07T20:29:10,914 warnings.warn(msg) 2025-09-07T20:29:11,357 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T20:29:11,358 !! 2025-09-07T20:29:11,358 ******************************************************************************** 2025-09-07T20:29:11,358 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T20:29:11,358 License :: OSI Approved :: BSD License 2025-09-07T20:29:11,358 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T20:29:11,358 ******************************************************************************** 2025-09-07T20:29:11,359 !! 2025-09-07T20:29:11,359 self._finalize_license_expression() 2025-09-07T20:29:11,447 running clean 2025-09-07T20:29:11,623 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-07T20:29:11,623 'build/lib.linux-armv7l-cpython-313' does not exist -- can't clean it 2025-09-07T20:29:11,624 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-07T20:29:11,624 'build/scripts-3.13' does not exist -- can't clean it 2025-09-07T20:29:11,624 removing 'build' 2025-09-07T20:29:11,780 Failed to build nwalign 2025-09-07T20:29:11,781 ERROR: Failed to build one or more wheels 2025-09-07T20:29:11,782 Exception information: 2025-09-07T20:29:11,782 Traceback (most recent call last): 2025-09-07T20:29:11,782 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-07T20:29:11,782 status = _inner_run() 2025-09-07T20:29:11,782 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-07T20:29:11,782 return self.run(options, args) 2025-09-07T20:29:11,782 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-07T20:29:11,782 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-07T20:29:11,782 return func(self, options, args) 2025-09-07T20:29:11,782 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-07T20:29:11,782 raise CommandError("Failed to build one or more wheels") 2025-09-07T20:29:11,782 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-07T20:29:11,787 Removed build tracker: '/tmp/pip-build-tracker-u4j7eqg7'