2025-09-07T20:32:27,474 Created temporary directory: /tmp/pip-build-tracker-d8dyk499 2025-09-07T20:32:27,475 Initialized build tracking at /tmp/pip-build-tracker-d8dyk499 2025-09-07T20:32:27,475 Created build tracker: /tmp/pip-build-tracker-d8dyk499 2025-09-07T20:32:27,475 Entered build tracker: /tmp/pip-build-tracker-d8dyk499 2025-09-07T20:32:27,475 Created temporary directory: /tmp/pip-wheel-ns2d297v 2025-09-07T20:32:27,479 Created temporary directory: /tmp/pip-ephem-wheel-cache-d6ay648i 2025-09-07T20:32:27,536 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-07T20:32:27,538 2 location(s) to search for versions of nwalign: 2025-09-07T20:32:27,538 * https://pypi.org/simple/nwalign/ 2025-09-07T20:32:27,538 * https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:32:27,538 Fetching project page and analyzing links: https://pypi.org/simple/nwalign/ 2025-09-07T20:32:27,539 Getting page https://pypi.org/simple/nwalign/ 2025-09-07T20:32:27,540 Found index url https://pypi.org/simple/ 2025-09-07T20:32:27,612 Fetched page https://pypi.org/simple/nwalign/ as application/vnd.pypi.simple.v1+json 2025-09-07T20:32:27,613 Found link https://files.pythonhosted.org/packages/c8/26/9ca7ef2ddd1680a8a56c8b9c04f0b97f6c5a4b1fdd32f4795022317823a8/nwalign-0.1.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1 2025-09-07T20:32:27,613 Found link https://files.pythonhosted.org/packages/a1/c8/1e9a68782c95d700d695c8b1f3a8934e1072e8ed60491e430896b834f961/nwalign-0.1.1.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1.1 2025-09-07T20:32:27,614 Found link https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1.2 2025-09-07T20:32:27,614 Found link https://files.pythonhosted.org/packages/e4/56/1e74d542efb45570042356a81bbad81cc6adc23bb4d5fcf6fd642ec2658b/nwalign-0.1.3.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1.3 2025-09-07T20:32:27,614 Found link https://files.pythonhosted.org/packages/5d/35/f962c0a6d870ea7ff96ba2465b276054192d36597cee2832972a0736bbb1/nwalign-0.2.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.2 2025-09-07T20:32:27,614 Found link https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.3.0 2025-09-07T20:32:27,614 Found link https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.3.1 2025-09-07T20:32:27,615 Fetching project page and analyzing links: https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:32:27,615 Getting page https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:32:27,616 Found index url https://www.piwheels.org/simple/ 2025-09-07T20:32:27,708 Fetched page https://www.piwheels.org/simple/nwalign/ as text/html 2025-09-07T20:32:27,716 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp35-cp35m-linux_armv7l.whl#sha256=0e50aba5718a22fcc30c7d356e6cbca9f721c91d12ab32e7778624dca0940847 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,717 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp35-cp35m-linux_armv6l.whl#sha256=0e50aba5718a22fcc30c7d356e6cbca9f721c91d12ab32e7778624dca0940847 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,717 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp34-cp34m-linux_armv7l.whl#sha256=ae6113c797139e0f35a03f3ff8af1b2ff22e983e866116804cdb2e04fcf66cf2 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,717 Skipping link: No binaries permitted for nwalign: 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(from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,718 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp39-cp39-linux_armv7l.whl#sha256=08fb1551c85e0ecfdd72b0c2f3e03b9a0de96b8531202e5ff0b2b6fa1a560e43 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,718 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp34-cp34m-linux_armv7l.whl#sha256=0f9707e25f4cca1595233e0e171c833a750fad16671b0c75c995f09e74df93fe (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,718 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp34-cp34m-linux_armv6l.whl#sha256=0f9707e25f4cca1595233e0e171c833a750fad16671b0c75c995f09e74df93fe (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,718 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp35-cp35m-linux_armv6l.whl#sha256=9fe5f8af4faf081bd4d7dfc0da41ae486a23ad9ddef3babde9a69aac66a79c7d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,718 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp35-cp35m-linux_armv7l.whl#sha256=9fe5f8af4faf081bd4d7dfc0da41ae486a23ad9ddef3babde9a69aac66a79c7d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,718 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=010fa2e332fb1fd47241b2995a9ac6870c79da5db8e9f414f16deafd5c3e94c0 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,719 Skipping link: No binaries permitted for nwalign: 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(from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,719 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp35-cp35m-linux_armv6l.whl#sha256=51218ba0b2cac7da2369f816741091a1ca6655f6803e0ee1cb1cb78d1433f306 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,719 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp34-cp34m-linux_armv7l.whl#sha256=f87e3ddff26114d9035b65a473f6c962e80a383b56607581149c97e329b3160a (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,719 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp34-cp34m-linux_armv6l.whl#sha256=f87e3ddff26114d9035b65a473f6c962e80a383b56607581149c97e329b3160a (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,720 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp37-cp37m-linux_armv7l.whl#sha256=f8cf67c435c305698af9aaea9170c1a6e255630b6589b6409d2c2b633939c01e (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,720 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp37-cp37m-linux_armv6l.whl#sha256=f8cf67c435c305698af9aaea9170c1a6e255630b6589b6409d2c2b633939c01e (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,720 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp39-cp39-linux_armv6l.whl#sha256=631f718358e76db5bc00a55370722902bb2031198826fbaf7a18f644c9a9e35f (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,720 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp39-cp39-linux_armv7l.whl#sha256=631f718358e76db5bc00a55370722902bb2031198826fbaf7a18f644c9a9e35f (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,720 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp35-cp35m-linux_armv7l.whl#sha256=e65315f5a29a7907ad4e0c9e28f2c81cd8f2a401632c114520ef48eaed3aa67d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,720 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp35-cp35m-linux_armv6l.whl#sha256=e65315f5a29a7907ad4e0c9e28f2c81cd8f2a401632c114520ef48eaed3aa67d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,720 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp34-cp34m-linux_armv7l.whl#sha256=059f73659cca427340d71fee5bfdf4e6479b7ba5ca5cd884941a1fa939573541 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,721 Skipping link: No binaries permitted for nwalign: 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https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp34-cp34m-linux_armv6l.whl#sha256=0c8103577d0ab325258569e3f899576b2aa71d77af8cb6f3bee13aaa92370e63 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,722 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp35-cp35m-linux_armv6l.whl#sha256=05231f91c31665fc5a1c4039f2e36013fd1b49b5f38108f750af1aaf8858179b (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,722 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp35-cp35m-linux_armv7l.whl#sha256=05231f91c31665fc5a1c4039f2e36013fd1b49b5f38108f750af1aaf8858179b (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,722 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp35-cp35m-linux_armv7l.whl#sha256=6d0d1ff20e0a0cf071f3edb683e564e5795b6f14f356bde26acdd74fc0eb9d30 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,722 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp35-cp35m-linux_armv6l.whl#sha256=6d0d1ff20e0a0cf071f3edb683e564e5795b6f14f356bde26acdd74fc0eb9d30 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,722 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp34-cp34m-linux_armv7l.whl#sha256=33f737806954650dec90b3e358b6ef762bb5757b3184c24e8769b0feb3d4f5e1 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,722 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp34-cp34m-linux_armv6l.whl#sha256=33f737806954650dec90b3e358b6ef762bb5757b3184c24e8769b0feb3d4f5e1 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:27,723 Skipping link: not a file: https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:32:27,723 Skipping link: not a file: https://pypi.org/simple/nwalign/ 2025-09-07T20:32:27,748 Given no hashes to check 1 links for project 'nwalign': discarding no candidates 2025-09-07T20:32:27,749 Collecting nwalign==0.2 2025-09-07T20:32:27,750 Created temporary directory: /tmp/pip-unpack-1anzk7cx 2025-09-07T20:32:27,885 Downloading nwalign-0.2.tar.gz (43 kB) 2025-09-07T20:32:27,922 Added nwalign==0.2 from https://files.pythonhosted.org/packages/5d/35/f962c0a6d870ea7ff96ba2465b276054192d36597cee2832972a0736bbb1/nwalign-0.2.tar.gz to build tracker '/tmp/pip-build-tracker-d8dyk499' 2025-09-07T20:32:27,923 Running setup.py (path:/tmp/pip-wheel-ns2d297v/nwalign_7caef2a21db840f78948b83ee28d57ca/setup.py) egg_info for package nwalign 2025-09-07T20:32:27,923 Created temporary directory: /tmp/pip-pip-egg-info-q63yjp3v 2025-09-07T20:32:27,924 Preparing metadata (setup.py): started 2025-09-07T20:32:27,924 Running command python setup.py egg_info 2025-09-07T20:32:28,880 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-07T20:32:28,880 warnings.warn(msg) 2025-09-07T20:32:29,274 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T20:32:29,274 !! 2025-09-07T20:32:29,274 ******************************************************************************** 2025-09-07T20:32:29,274 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T20:32:29,275 License :: OSI Approved :: BSD License 2025-09-07T20:32:29,275 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T20:32:29,275 ******************************************************************************** 2025-09-07T20:32:29,275 !! 2025-09-07T20:32:29,275 self._finalize_license_expression() 2025-09-07T20:32:29,348 running egg_info 2025-09-07T20:32:29,426 creating /tmp/pip-pip-egg-info-q63yjp3v/nwalign.egg-info 2025-09-07T20:32:29,426 writing /tmp/pip-pip-egg-info-q63yjp3v/nwalign.egg-info/PKG-INFO 2025-09-07T20:32:29,428 writing dependency_links to /tmp/pip-pip-egg-info-q63yjp3v/nwalign.egg-info/dependency_links.txt 2025-09-07T20:32:29,429 writing entry points to /tmp/pip-pip-egg-info-q63yjp3v/nwalign.egg-info/entry_points.txt 2025-09-07T20:32:29,429 writing requirements to /tmp/pip-pip-egg-info-q63yjp3v/nwalign.egg-info/requires.txt 2025-09-07T20:32:29,429 writing top-level names to /tmp/pip-pip-egg-info-q63yjp3v/nwalign.egg-info/top_level.txt 2025-09-07T20:32:29,430 writing manifest file '/tmp/pip-pip-egg-info-q63yjp3v/nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:29,729 reading manifest file '/tmp/pip-pip-egg-info-q63yjp3v/nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:29,732 writing manifest file '/tmp/pip-pip-egg-info-q63yjp3v/nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:29,870 Preparing metadata (setup.py): finished with status 'done' 2025-09-07T20:32:29,874 Source in /tmp/pip-wheel-ns2d297v/nwalign_7caef2a21db840f78948b83ee28d57ca has version 0.2, which satisfies requirement nwalign==0.2 from https://files.pythonhosted.org/packages/5d/35/f962c0a6d870ea7ff96ba2465b276054192d36597cee2832972a0736bbb1/nwalign-0.2.tar.gz 2025-09-07T20:32:29,874 Removed nwalign==0.2 from https://files.pythonhosted.org/packages/5d/35/f962c0a6d870ea7ff96ba2465b276054192d36597cee2832972a0736bbb1/nwalign-0.2.tar.gz from build tracker '/tmp/pip-build-tracker-d8dyk499' 2025-09-07T20:32:29,878 Created temporary directory: /tmp/pip-unpack-hzv8ofjn 2025-09-07T20:32:29,878 Created temporary directory: /tmp/pip-unpack-22hytzzo 2025-09-07T20:32:29,878 Building wheels for collected packages: nwalign 2025-09-07T20:32:29,879 Created temporary directory: /tmp/pip-wheel-x997o2aq 2025-09-07T20:32:29,880 DEPRECATION: Building 'nwalign' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'nwalign'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-07T20:32:29,881 Building wheel for nwalign (setup.py): started 2025-09-07T20:32:29,881 Destination directory: /tmp/pip-wheel-x997o2aq 2025-09-07T20:32:29,882 Running command python setup.py bdist_wheel 2025-09-07T20:32:30,759 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-07T20:32:30,760 warnings.warn(msg) 2025-09-07T20:32:31,141 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T20:32:31,141 !! 2025-09-07T20:32:31,141 ******************************************************************************** 2025-09-07T20:32:31,141 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T20:32:31,141 License :: OSI Approved :: BSD License 2025-09-07T20:32:31,141 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T20:32:31,142 ******************************************************************************** 2025-09-07T20:32:31,142 !! 2025-09-07T20:32:31,142 self._finalize_license_expression() 2025-09-07T20:32:31,142 running bdist_wheel 2025-09-07T20:32:31,506 running build 2025-09-07T20:32:31,506 running build_py 2025-09-07T20:32:31,582 creating build/lib.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:31,582 copying nwalign/__init__.py -> build/lib.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:31,583 copying nwalign/nwserver.py -> build/lib.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:31,583 running egg_info 2025-09-07T20:32:31,659 writing nwalign.egg-info/PKG-INFO 2025-09-07T20:32:31,660 writing dependency_links to nwalign.egg-info/dependency_links.txt 2025-09-07T20:32:31,661 writing entry points to nwalign.egg-info/entry_points.txt 2025-09-07T20:32:31,661 writing requirements to nwalign.egg-info/requires.txt 2025-09-07T20:32:31,662 writing top-level names to nwalign.egg-info/top_level.txt 2025-09-07T20:32:31,737 reading manifest file 'nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:31,741 writing manifest file 'nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:31,742 copying nwalign/cnwalign.c -> build/lib.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:31,745 running build_ext 2025-09-07T20:32:32,088 building 'cnwalign' extension 2025-09-07T20:32:32,089 creating build/temp.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:32,089 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -Inwalign -I/usr/include/python3.13 -c nwalign/cnwalign.c -o build/temp.linux-armv7l-cpython-313/nwalign/cnwalign.o 2025-09-07T20:32:32,647 nwalign/cnwalign.c: In function ‘__pyx_pf_7nwalign_8cnwalign_read_matrix’: 2025-09-07T20:32:32,648 nwalign/cnwalign.c:1256:15: error: implicit declaration of function ‘PyEval_CallObjectWithKeywords’ [-Wimplicit-function-declaration] 2025-09-07T20:32:32,648 1256 | __pyx_t_2 = PyEval_CallObjectWithKeywords(((PyObject *)((PyObject*)__pyx_ptype_5numpy_ndarray)), __pyx_t_3, ((PyObject *)__pyx_t_6)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 101; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:32,649 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,649 nwalign/cnwalign.c:1256:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,650 1256 | __pyx_t_2 = PyEval_CallObjectWithKeywords(((PyObject *)((PyObject*)__pyx_ptype_5numpy_ndarray)), __pyx_t_3, ((PyObject *)__pyx_t_6)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 101; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:32,650 | ^ 2025-09-07T20:32:32,656 nwalign/cnwalign.c:1373:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2025-09-07T20:32:32,656 1373 | for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_4; __pyx_t_11+=1) { 2025-09-07T20:32:32,656 | ^ 2025-09-07T20:32:32,658 nwalign/cnwalign.c:1436:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2025-09-07T20:32:32,658 1436 | if (unlikely(!(__pyx_v_ai == __pyx_t_14))) { 2025-09-07T20:32:32,658 | ^~ 2025-09-07T20:32:32,658 nwalign/cnwalign.c:250:41: note: in definition of macro ‘unlikely’ 2025-09-07T20:32:32,658 250 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-07T20:32:32,658 | ^ 2025-09-07T20:32:32,661 nwalign/cnwalign.c:961:14: warning: variable ‘__pyx_bshape_1_a’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,661 961 | Py_ssize_t __pyx_bshape_1_a = 0; 2025-09-07T20:32:32,661 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,662 nwalign/cnwalign.c:960:14: warning: variable ‘__pyx_bshape_0_a’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,662 960 | Py_ssize_t __pyx_bshape_0_a = 0; 2025-09-07T20:32:32,662 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,670 nwalign/cnwalign.c: In function ‘__pyx_pf_7nwalign_8cnwalign_global_align’: 2025-09-07T20:32:32,672 nwalign/cnwalign.c:2030:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,672 2030 | __pyx_t_6 = PyEval_CallObjectWithKeywords(__pyx_t_3, __pyx_t_4, ((PyObject *)__pyx_t_5)); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 158; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:32,672 | ^ 2025-09-07T20:32:32,676 nwalign/cnwalign.c:2088:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,677 2088 | __pyx_t_2 = PyEval_CallObjectWithKeywords(__pyx_t_5, __pyx_t_4, ((PyObject *)__pyx_t_3)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 159; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:32,677 | ^ 2025-09-07T20:32:32,681 nwalign/cnwalign.c:2146:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,681 2146 | __pyx_t_6 = PyEval_CallObjectWithKeywords(__pyx_t_3, __pyx_t_4, ((PyObject *)__pyx_t_5)); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 160; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:32,681 | ^ 2025-09-07T20:32:32,690 nwalign/cnwalign.c:2384:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,690 2384 | __pyx_t_20 = PyEval_CallObjectWithKeywords(__pyx_t_5, __pyx_t_3, ((PyObject *)__pyx_t_6)); if (unlikely(!__pyx_t_20)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:32,691 | ^ 2025-09-07T20:32:32,695 nwalign/cnwalign.c:2442:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,695 2442 | __pyx_t_2 = PyEval_CallObjectWithKeywords(__pyx_t_3, __pyx_t_20, ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 176; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:32,695 | ^ 2025-09-07T20:32:32,703 nwalign/cnwalign.c:2699:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-07T20:32:32,703 2699 | __pyx_t_10 = (__pyx_v_ii == -1); 2025-09-07T20:32:32,703 | ^~ 2025-09-07T20:32:32,705 nwalign/cnwalign.c:2701:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-07T20:32:32,705 2701 | __pyx_t_31 = (__pyx_v_jj == -1); 2025-09-07T20:32:32,705 | ^~ 2025-09-07T20:32:32,708 nwalign/cnwalign.c:2715:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-07T20:32:32,708 2715 | __pyx_t_32 = (__pyx_v_ii == -1); 2025-09-07T20:32:32,708 | ^~ 2025-09-07T20:32:32,731 nwalign/cnwalign.c:2725:26: error: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2025-09-07T20:32:32,731 2725 | __pyx_t_33 = PyString_FromStringAndSize((&__pyx_v_ci), ((size_t)1)); 2025-09-07T20:32:32,731 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,731 | PyBytes_FromStringAndSize 2025-09-07T20:32:32,734 nwalign/cnwalign.c:2725:24: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,734 2725 | __pyx_t_33 = PyString_FromStringAndSize((&__pyx_v_ci), ((size_t)1)); 2025-09-07T20:32:32,734 | ^ 2025-09-07T20:32:32,738 nwalign/cnwalign.c:2780:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-07T20:32:32,738 2780 | __pyx_t_32 = (__pyx_v_jj == -1); 2025-09-07T20:32:32,738 | ^~ 2025-09-07T20:32:32,741 nwalign/cnwalign.c:2790:24: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,741 2790 | __pyx_t_33 = PyString_FromStringAndSize((&__pyx_v_cj), ((size_t)1)); 2025-09-07T20:32:32,741 | ^ 2025-09-07T20:32:32,749 nwalign/cnwalign.c:3122:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,749 3122 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2025-09-07T20:32:32,749 | ^ 2025-09-07T20:32:32,752 nwalign/cnwalign.c:3131:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,752 3131 | __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2025-09-07T20:32:32,753 | ^ 2025-09-07T20:32:32,777 nwalign/cnwalign.c:3140:21: error: implicit declaration of function ‘PyString_AS_STRING’; did you mean ‘PyBytes_AS_STRING’? [-Wimplicit-function-declaration] 2025-09-07T20:32:32,777 3140 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2025-09-07T20:32:32,777 | ^~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,777 | PyBytes_AS_STRING 2025-09-07T20:32:32,780 nwalign/cnwalign.c:3140:19: error: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,780 3140 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2025-09-07T20:32:32,780 | ^ 2025-09-07T20:32:32,783 nwalign/cnwalign.c:3149:19: error: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:32,784 3149 | __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai); 2025-09-07T20:32:32,784 | ^ 2025-09-07T20:32:32,817 nwalign/cnwalign.c:3353:3: error: implicit declaration of function ‘_PyString_Resize’ [-Wimplicit-function-declaration] 2025-09-07T20:32:32,817 3353 | _PyString_Resize((&__pyx_v_aj), __pyx_v_align_counter); 2025-09-07T20:32:32,818 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,821 nwalign/cnwalign.c:1691:14: warning: variable ‘__pyx_bshape_1_agap’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,821 1691 | Py_ssize_t __pyx_bshape_1_agap = 0; 2025-09-07T20:32:32,821 | ^~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,822 nwalign/cnwalign.c:1690:14: warning: variable ‘__pyx_bshape_0_agap’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,822 1690 | Py_ssize_t __pyx_bshape_0_agap = 0; 2025-09-07T20:32:32,822 | ^~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,824 nwalign/cnwalign.c:1686:14: warning: variable ‘__pyx_bshape_1_score’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,824 1686 | Py_ssize_t __pyx_bshape_1_score = 0; 2025-09-07T20:32:32,824 | ^~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,825 nwalign/cnwalign.c:1685:14: warning: variable ‘__pyx_bshape_0_score’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,825 1685 | Py_ssize_t __pyx_bshape_0_score = 0; 2025-09-07T20:32:32,825 | ^~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,827 nwalign/cnwalign.c:1681:14: warning: variable ‘__pyx_bshape_1_pointer’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,827 1681 | Py_ssize_t __pyx_bshape_1_pointer = 0; 2025-09-07T20:32:32,827 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,828 nwalign/cnwalign.c:1680:14: warning: variable ‘__pyx_bshape_0_pointer’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,828 1680 | Py_ssize_t __pyx_bshape_0_pointer = 0; 2025-09-07T20:32:32,828 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,830 nwalign/cnwalign.c:1676:14: warning: variable ‘__pyx_bshape_1_amatrix’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,830 1676 | Py_ssize_t __pyx_bshape_1_amatrix = 0; 2025-09-07T20:32:32,830 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,831 nwalign/cnwalign.c:1675:14: warning: variable ‘__pyx_bshape_0_amatrix’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:32,831 1675 | Py_ssize_t __pyx_bshape_0_amatrix = 0; 2025-09-07T20:32:32,831 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,855 nwalign/cnwalign.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-07T20:32:32,860 nwalign/cnwalign.c:3544:69: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-07T20:32:32,860 3544 | __pyx_t_2 = (!PyArray_CHKFLAGS(((PyArrayObject *)__pyx_v_self), NPY_C_CONTIGUOUS)); 2025-09-07T20:32:32,860 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,860 | PyBUF_C_CONTIGUOUS 2025-09-07T20:32:32,861 nwalign/cnwalign.c:3544:69: note: each undeclared identifier is reported only once for each function it appears in 2025-09-07T20:32:32,887 nwalign/cnwalign.c:3590:69: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-07T20:32:32,888 3590 | __pyx_t_1 = (!PyArray_CHKFLAGS(((PyArrayObject *)__pyx_v_self), NPY_F_CONTIGUOUS)); 2025-09-07T20:32:32,888 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,888 | PyBUF_F_CONTIGUOUS 2025-09-07T20:32:32,896 nwalign/cnwalign.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-07T20:32:32,901 nwalign/cnwalign.c:4553:40: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-07T20:32:32,901 4553 | if (likely(((PyObject *)__pyx_v_descr->names) != Py_None)) { 2025-09-07T20:32:32,901 | ^~ 2025-09-07T20:32:32,901 nwalign/cnwalign.c:249:41: note: in definition of macro ‘likely’ 2025-09-07T20:32:32,901 249 | #define likely(x) __builtin_expect(!!(x), 1) 2025-09-07T20:32:32,901 | ^ 2025-09-07T20:32:32,906 nwalign/cnwalign.c:4554:58: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-07T20:32:32,906 4554 | __pyx_t_1 = 0; __pyx_t_2 = ((PyObject *)__pyx_v_descr->names); __Pyx_INCREF(__pyx_t_2); 2025-09-07T20:32:32,906 | ^~ 2025-09-07T20:32:32,912 nwalign/cnwalign.c:4572:47: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-07T20:32:32,912 4572 | __pyx_t_3 = PyObject_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (!__pyx_t_3) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 782; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:32,912 | ^~ 2025-09-07T20:32:32,922 nwalign/cnwalign.c:4758:41: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-07T20:32:32,922 4758 | (__pyx_v_offset[0]) += __pyx_v_child->elsize; 2025-09-07T20:32:32,922 | ^~ 2025-09-07T20:32:32,962 nwalign/cnwalign.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-07T20:32:32,971 nwalign/cnwalign.c:5744:25: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-07T20:32:32,971 5744 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2025-09-07T20:32:32,971 | ^~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:32,971 | PyDict_GET_SIZE 2025-09-07T20:32:33,001 nwalign/cnwalign.c: In function ‘__Pyx_ErrRestore’: 2025-09-07T20:32:33,008 nwalign/cnwalign.c:6250:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:32:33,008 6250 | tmp_type = tstate->curexc_type; 2025-09-07T20:32:33,008 | ^~ 2025-09-07T20:32:33,015 nwalign/cnwalign.c:6251:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:32:33,015 6251 | tmp_value = tstate->curexc_value; 2025-09-07T20:32:33,015 | ^~ 2025-09-07T20:32:33,022 nwalign/cnwalign.c:6252:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:33,022 6252 | tmp_tb = tstate->curexc_traceback; 2025-09-07T20:32:33,022 | ^~ 2025-09-07T20:32:33,029 nwalign/cnwalign.c:6253:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:32:33,029 6253 | tstate->curexc_type = type; 2025-09-07T20:32:33,029 | ^~ 2025-09-07T20:32:33,035 nwalign/cnwalign.c:6254:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:32:33,036 6254 | tstate->curexc_value = value; 2025-09-07T20:32:33,036 | ^~ 2025-09-07T20:32:33,042 nwalign/cnwalign.c:6255:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:33,043 6255 | tstate->curexc_traceback = tb; 2025-09-07T20:32:33,043 | ^~ 2025-09-07T20:32:33,043 nwalign/cnwalign.c: In function ‘__Pyx_ErrFetch’: 2025-09-07T20:32:33,050 nwalign/cnwalign.c:6263:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:32:33,050 6263 | *type = tstate->curexc_type; 2025-09-07T20:32:33,050 | ^~ 2025-09-07T20:32:33,057 nwalign/cnwalign.c:6264:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:32:33,057 6264 | *value = tstate->curexc_value; 2025-09-07T20:32:33,057 | ^~ 2025-09-07T20:32:33,063 nwalign/cnwalign.c:6265:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:33,064 6265 | *tb = tstate->curexc_traceback; 2025-09-07T20:32:33,064 | ^~ 2025-09-07T20:32:33,070 nwalign/cnwalign.c:6267:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:32:33,070 6267 | tstate->curexc_type = 0; 2025-09-07T20:32:33,071 | ^~ 2025-09-07T20:32:33,077 nwalign/cnwalign.c:6268:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:32:33,077 6268 | tstate->curexc_value = 0; 2025-09-07T20:32:33,078 | ^~ 2025-09-07T20:32:33,084 nwalign/cnwalign.c:6269:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:33,084 6269 | tstate->curexc_traceback = 0; 2025-09-07T20:32:33,084 | ^~ 2025-09-07T20:32:33,100 nwalign/cnwalign.c: In function ‘__Pyx_Raise’: 2025-09-07T20:32:33,107 nwalign/cnwalign.c:6498:34: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:33,107 6498 | PyObject* tmp_tb = tstate->curexc_traceback; 2025-09-07T20:32:33,107 | ^~ 2025-09-07T20:32:33,114 nwalign/cnwalign.c:6501:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:33,114 6501 | tstate->curexc_traceback = tb; 2025-09-07T20:32:33,115 | ^~ 2025-09-07T20:32:33,147 nwalign/cnwalign.c: In function ‘__Pyx_AddTraceback’: 2025-09-07T20:32:33,154 nwalign/cnwalign.c:7144:5: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-07T20:32:33,154 7144 | py_code = PyCode_New( 2025-09-07T20:32:33,154 | ^~~~~~~ 2025-09-07T20:32:33,154 In file included from /usr/include/python3.13/Python.h:101, 2025-09-07T20:32:33,154 from nwalign/cnwalign.c:4: 2025-09-07T20:32:33,155 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-07T20:32:33,155 213 | PyCode_New( 2025-09-07T20:32:33,155 | ^~~~~~~~~~ 2025-09-07T20:32:33,162 nwalign/cnwalign.c:7160:9: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:33,162 7160 | __pyx_lineno, /*int firstlineno,*/ 2025-09-07T20:32:33,162 | ^~~~~~~~~~~~ 2025-09-07T20:32:33,162 | | 2025-09-07T20:32:33,162 | int 2025-09-07T20:32:33,162 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-07T20:32:33,163 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-07T20:32:33,163 | ~~~~~~~~~~^ 2025-09-07T20:32:33,169 nwalign/cnwalign.c:7161:9: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-07T20:32:33,170 7161 | __pyx_empty_bytes /*PyObject *lnotab*/ 2025-09-07T20:32:33,170 | ^~~~~~~~~~~~~~~~~ 2025-09-07T20:32:33,170 | | 2025-09-07T20:32:33,170 | PyObject * {aka struct _object *} 2025-09-07T20:32:33,170 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-07T20:32:33,170 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-07T20:32:33,170 | ~~~~^ 2025-09-07T20:32:33,178 nwalign/cnwalign.c:7144:15: error: too few arguments to function ‘PyCode_New’ 2025-09-07T20:32:33,178 7144 | py_code = PyCode_New( 2025-09-07T20:32:33,178 | ^~~~~~~~~~ 2025-09-07T20:32:33,178 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-07T20:32:33,178 213 | PyCode_New( 2025-09-07T20:32:33,178 | ^~~~~~~~~~ 2025-09-07T20:32:33,189 nwalign/cnwalign.c:7171:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-07T20:32:33,189 7171 | py_frame->f_lineno = __pyx_lineno; 2025-09-07T20:32:33,189 | ^~ 2025-09-07T20:32:33,253 nwalign/cnwalign.c: At top level: 2025-09-07T20:32:33,258 nwalign/cnwalign.c:4245:13: warning: ‘__pyx_pf_5numpy_7ndarray___releasebuffer__’ defined but not used [-Wunused-function] 2025-09-07T20:32:33,258 4245 | static void __pyx_pf_5numpy_7ndarray___releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { 2025-09-07T20:32:33,258 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:33,261 nwalign/cnwalign.c:3440:12: warning: ‘__pyx_pf_5numpy_7ndarray___getbuffer__’ defined but not used [-Wunused-function] 2025-09-07T20:32:33,262 3440 | static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { 2025-09-07T20:32:33,262 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:33,267 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-07T20:32:33,443 ERROR: python setup.py bdist_wheel exited with 1 2025-09-07T20:32:33,454 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-07T20:32:33,454 exec(compile('"'"''"'"''"'"' 2025-09-07T20:32:33,454 # This is -- a caller that pip uses to run setup.py 2025-09-07T20:32:33,454 # 2025-09-07T20:32:33,454 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-07T20:32:33,454 # import from `distutils.core` to work with newer packaging standards. 2025-09-07T20:32:33,454 # - It provides a clear error message when setuptools is not installed. 2025-09-07T20:32:33,454 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-07T20:32:33,454 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-07T20:32:33,454 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-07T20:32:33,454 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-07T20:32:33,454 import os, sys, tokenize, traceback 2025-09-07T20:32:33,454 2025-09-07T20:32:33,454 try: 2025-09-07T20:32:33,454 import setuptools 2025-09-07T20:32:33,454 except ImportError: 2025-09-07T20:32:33,454 print( 2025-09-07T20:32:33,454 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-07T20:32:33,454 "the build environment with exception:", 2025-09-07T20:32:33,454 file=sys.stderr, 2025-09-07T20:32:33,454 ) 2025-09-07T20:32:33,454 traceback.print_exc() 2025-09-07T20:32:33,454 sys.exit(1) 2025-09-07T20:32:33,454 2025-09-07T20:32:33,454 __file__ = %r 2025-09-07T20:32:33,454 sys.argv[0] = __file__ 2025-09-07T20:32:33,454 2025-09-07T20:32:33,454 if os.path.exists(__file__): 2025-09-07T20:32:33,454 filename = __file__ 2025-09-07T20:32:33,454 with tokenize.open(__file__) as f: 2025-09-07T20:32:33,454 setup_py_code = f.read() 2025-09-07T20:32:33,454 else: 2025-09-07T20:32:33,454 filename = "" 2025-09-07T20:32:33,454 setup_py_code = "from setuptools import setup; setup()" 2025-09-07T20:32:33,454 2025-09-07T20:32:33,454 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T20:32:33,454 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ns2d297v/nwalign_7caef2a21db840f78948b83ee28d57ca/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-x997o2aq[/] 2025-09-07T20:32:33,454 [bold magenta]cwd[/]: /tmp/pip-wheel-ns2d297v/nwalign_7caef2a21db840f78948b83ee28d57ca/ 2025-09-07T20:32:33,455 Building wheel for nwalign (setup.py): finished with status 'error' 2025-09-07T20:32:33,455 ERROR: Failed building wheel for nwalign 2025-09-07T20:32:33,456 Running setup.py clean for nwalign 2025-09-07T20:32:33,457 Running command python setup.py clean 2025-09-07T20:32:34,334 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-07T20:32:34,334 warnings.warn(msg) 2025-09-07T20:32:34,714 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T20:32:34,715 !! 2025-09-07T20:32:34,715 ******************************************************************************** 2025-09-07T20:32:34,715 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T20:32:34,715 License :: OSI Approved :: BSD License 2025-09-07T20:32:34,715 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T20:32:34,715 ******************************************************************************** 2025-09-07T20:32:34,716 !! 2025-09-07T20:32:34,716 self._finalize_license_expression() 2025-09-07T20:32:34,788 running clean 2025-09-07T20:32:34,934 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-07T20:32:34,934 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-07T20:32:34,935 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-07T20:32:34,935 'build/scripts-3.13' does not exist -- can't clean it 2025-09-07T20:32:34,935 removing 'build' 2025-09-07T20:32:35,072 Failed to build nwalign 2025-09-07T20:32:35,073 ERROR: Failed to build one or more wheels 2025-09-07T20:32:35,074 Exception information: 2025-09-07T20:32:35,074 Traceback (most recent call last): 2025-09-07T20:32:35,074 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-07T20:32:35,074 status = _inner_run() 2025-09-07T20:32:35,074 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-07T20:32:35,074 return self.run(options, args) 2025-09-07T20:32:35,074 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-07T20:32:35,074 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-07T20:32:35,074 return func(self, options, args) 2025-09-07T20:32:35,074 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-07T20:32:35,074 raise CommandError("Failed to build one or more wheels") 2025-09-07T20:32:35,074 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-07T20:32:35,078 Removed build tracker: '/tmp/pip-build-tracker-d8dyk499'