2025-09-07T20:32:31,103 Created temporary directory: /tmp/pip-build-tracker-4vyp5ft3 2025-09-07T20:32:31,104 Initialized build tracking at /tmp/pip-build-tracker-4vyp5ft3 2025-09-07T20:32:31,104 Created build tracker: /tmp/pip-build-tracker-4vyp5ft3 2025-09-07T20:32:31,104 Entered build tracker: /tmp/pip-build-tracker-4vyp5ft3 2025-09-07T20:32:31,105 Created temporary directory: /tmp/pip-wheel-mawpifay 2025-09-07T20:32:31,108 Created temporary directory: /tmp/pip-ephem-wheel-cache-mcfxic_8 2025-09-07T20:32:31,164 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-07T20:32:31,167 2 location(s) to search for versions of nwalign: 2025-09-07T20:32:31,167 * https://pypi.org/simple/nwalign/ 2025-09-07T20:32:31,167 * https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:32:31,167 Fetching project page and analyzing links: https://pypi.org/simple/nwalign/ 2025-09-07T20:32:31,167 Getting page https://pypi.org/simple/nwalign/ 2025-09-07T20:32:31,168 Found index url https://pypi.org/simple/ 2025-09-07T20:32:31,238 Fetched page https://pypi.org/simple/nwalign/ as application/vnd.pypi.simple.v1+json 2025-09-07T20:32:31,239 Found link https://files.pythonhosted.org/packages/c8/26/9ca7ef2ddd1680a8a56c8b9c04f0b97f6c5a4b1fdd32f4795022317823a8/nwalign-0.1.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1 2025-09-07T20:32:31,240 Found link https://files.pythonhosted.org/packages/a1/c8/1e9a68782c95d700d695c8b1f3a8934e1072e8ed60491e430896b834f961/nwalign-0.1.1.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1.1 2025-09-07T20:32:31,240 Found link https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1.2 2025-09-07T20:32:31,240 Found link https://files.pythonhosted.org/packages/e4/56/1e74d542efb45570042356a81bbad81cc6adc23bb4d5fcf6fd642ec2658b/nwalign-0.1.3.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.1.3 2025-09-07T20:32:31,240 Found link https://files.pythonhosted.org/packages/5d/35/f962c0a6d870ea7ff96ba2465b276054192d36597cee2832972a0736bbb1/nwalign-0.2.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.2 2025-09-07T20:32:31,241 Found link https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.3.0 2025-09-07T20:32:31,241 Found link https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz (from https://pypi.org/simple/nwalign/), version: 0.3.1 2025-09-07T20:32:31,241 Fetching project page and analyzing links: https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:32:31,241 Getting page https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:32:31,242 Found index url https://www.piwheels.org/simple/ 2025-09-07T20:32:31,350 Fetched page https://www.piwheels.org/simple/nwalign/ as text/html 2025-09-07T20:32:31,357 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp35-cp35m-linux_armv7l.whl#sha256=0e50aba5718a22fcc30c7d356e6cbca9f721c91d12ab32e7778624dca0940847 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,358 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp35-cp35m-linux_armv6l.whl#sha256=0e50aba5718a22fcc30c7d356e6cbca9f721c91d12ab32e7778624dca0940847 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,358 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp34-cp34m-linux_armv7l.whl#sha256=ae6113c797139e0f35a03f3ff8af1b2ff22e983e866116804cdb2e04fcf66cf2 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,358 Skipping link: No binaries permitted for nwalign: 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(from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,358 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.1-cp39-cp39-linux_armv7l.whl#sha256=08fb1551c85e0ecfdd72b0c2f3e03b9a0de96b8531202e5ff0b2b6fa1a560e43 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,359 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp34-cp34m-linux_armv7l.whl#sha256=0f9707e25f4cca1595233e0e171c833a750fad16671b0c75c995f09e74df93fe (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,359 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp34-cp34m-linux_armv6l.whl#sha256=0f9707e25f4cca1595233e0e171c833a750fad16671b0c75c995f09e74df93fe (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,359 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp35-cp35m-linux_armv6l.whl#sha256=9fe5f8af4faf081bd4d7dfc0da41ae486a23ad9ddef3babde9a69aac66a79c7d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,359 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp35-cp35m-linux_armv7l.whl#sha256=9fe5f8af4faf081bd4d7dfc0da41ae486a23ad9ddef3babde9a69aac66a79c7d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,359 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=010fa2e332fb1fd47241b2995a9ac6870c79da5db8e9f414f16deafd5c3e94c0 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,359 Skipping link: No binaries permitted for nwalign: 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(from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,360 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp35-cp35m-linux_armv6l.whl#sha256=51218ba0b2cac7da2369f816741091a1ca6655f6803e0ee1cb1cb78d1433f306 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,360 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp34-cp34m-linux_armv7l.whl#sha256=f87e3ddff26114d9035b65a473f6c962e80a383b56607581149c97e329b3160a (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,360 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp34-cp34m-linux_armv6l.whl#sha256=f87e3ddff26114d9035b65a473f6c962e80a383b56607581149c97e329b3160a (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,360 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp37-cp37m-linux_armv7l.whl#sha256=f8cf67c435c305698af9aaea9170c1a6e255630b6589b6409d2c2b633939c01e (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,360 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp37-cp37m-linux_armv6l.whl#sha256=f8cf67c435c305698af9aaea9170c1a6e255630b6589b6409d2c2b633939c01e (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,360 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp39-cp39-linux_armv6l.whl#sha256=631f718358e76db5bc00a55370722902bb2031198826fbaf7a18f644c9a9e35f (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,360 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.2-cp39-cp39-linux_armv7l.whl#sha256=631f718358e76db5bc00a55370722902bb2031198826fbaf7a18f644c9a9e35f (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,361 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp35-cp35m-linux_armv7l.whl#sha256=e65315f5a29a7907ad4e0c9e28f2c81cd8f2a401632c114520ef48eaed3aa67d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,361 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp35-cp35m-linux_armv6l.whl#sha256=e65315f5a29a7907ad4e0c9e28f2c81cd8f2a401632c114520ef48eaed3aa67d (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,361 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp34-cp34m-linux_armv7l.whl#sha256=059f73659cca427340d71fee5bfdf4e6479b7ba5ca5cd884941a1fa939573541 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,361 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.3-cp34-cp34m-linux_armv6l.whl#sha256=059f73659cca427340d71fee5bfdf4e6479b7ba5ca5cd884941a1fa939573541 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,361 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.2-cp35-cp35m-linux_armv7l.whl#sha256=1d807e3e04fcf29b318fa54e68355edc7051d36d8d59178f979d59b8b89faa4f (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,361 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.2-cp35-cp35m-linux_armv6l.whl#sha256=1d807e3e04fcf29b318fa54e68355edc7051d36d8d59178f979d59b8b89faa4f (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,361 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.2-cp34-cp34m-linux_armv7l.whl#sha256=43be14b0f5dfcd08d82b07636ce240399e1daaff6888cef7d9a902d38cfec888 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,362 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.2-cp34-cp34m-linux_armv6l.whl#sha256=43be14b0f5dfcd08d82b07636ce240399e1daaff6888cef7d9a902d38cfec888 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,362 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp34-cp34m-linux_armv7l.whl#sha256=0c8103577d0ab325258569e3f899576b2aa71d77af8cb6f3bee13aaa92370e63 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,362 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp34-cp34m-linux_armv6l.whl#sha256=0c8103577d0ab325258569e3f899576b2aa71d77af8cb6f3bee13aaa92370e63 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,362 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp35-cp35m-linux_armv6l.whl#sha256=05231f91c31665fc5a1c4039f2e36013fd1b49b5f38108f750af1aaf8858179b (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,362 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1.1-cp35-cp35m-linux_armv7l.whl#sha256=05231f91c31665fc5a1c4039f2e36013fd1b49b5f38108f750af1aaf8858179b (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,362 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp35-cp35m-linux_armv7l.whl#sha256=6d0d1ff20e0a0cf071f3edb683e564e5795b6f14f356bde26acdd74fc0eb9d30 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,362 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp35-cp35m-linux_armv6l.whl#sha256=6d0d1ff20e0a0cf071f3edb683e564e5795b6f14f356bde26acdd74fc0eb9d30 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,363 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp34-cp34m-linux_armv7l.whl#sha256=33f737806954650dec90b3e358b6ef762bb5757b3184c24e8769b0feb3d4f5e1 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,363 Skipping link: No binaries permitted for nwalign: https://archive1.piwheels.org/simple/nwalign/nwalign-0.1-cp34-cp34m-linux_armv6l.whl#sha256=33f737806954650dec90b3e358b6ef762bb5757b3184c24e8769b0feb3d4f5e1 (from https://www.piwheels.org/simple/nwalign/) 2025-09-07T20:32:31,363 Skipping link: not a file: https://www.piwheels.org/simple/nwalign/ 2025-09-07T20:32:31,363 Skipping link: not a file: https://pypi.org/simple/nwalign/ 2025-09-07T20:32:31,389 Given no hashes to check 1 links for project 'nwalign': discarding no candidates 2025-09-07T20:32:31,390 Collecting nwalign==0.3.0 2025-09-07T20:32:31,391 Created temporary directory: /tmp/pip-unpack-2juox29b 2025-09-07T20:32:31,529 Downloading nwalign-0.3.0.tar.gz (51 kB) 2025-09-07T20:32:31,574 Added nwalign==0.3.0 from https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-4vyp5ft3' 2025-09-07T20:32:31,575 Running setup.py (path:/tmp/pip-wheel-mawpifay/nwalign_be110cf0b00e41eb812f16faaa6fb989/setup.py) egg_info for package nwalign 2025-09-07T20:32:31,576 Created temporary directory: /tmp/pip-pip-egg-info-oozmygbh 2025-09-07T20:32:31,576 Preparing metadata (setup.py): started 2025-09-07T20:32:31,577 Running command python setup.py egg_info 2025-09-07T20:32:32,493 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-07T20:32:32,493 warnings.warn(msg) 2025-09-07T20:32:32,940 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T20:32:32,940 !! 2025-09-07T20:32:32,940 ******************************************************************************** 2025-09-07T20:32:32,940 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T20:32:32,940 License :: OSI Approved :: BSD License 2025-09-07T20:32:32,941 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T20:32:32,941 ******************************************************************************** 2025-09-07T20:32:32,941 !! 2025-09-07T20:32:32,941 self._finalize_license_expression() 2025-09-07T20:32:33,013 running egg_info 2025-09-07T20:32:33,087 creating /tmp/pip-pip-egg-info-oozmygbh/nwalign.egg-info 2025-09-07T20:32:33,087 writing /tmp/pip-pip-egg-info-oozmygbh/nwalign.egg-info/PKG-INFO 2025-09-07T20:32:33,089 writing dependency_links to /tmp/pip-pip-egg-info-oozmygbh/nwalign.egg-info/dependency_links.txt 2025-09-07T20:32:33,089 writing entry points to /tmp/pip-pip-egg-info-oozmygbh/nwalign.egg-info/entry_points.txt 2025-09-07T20:32:33,090 writing requirements to /tmp/pip-pip-egg-info-oozmygbh/nwalign.egg-info/requires.txt 2025-09-07T20:32:33,090 writing top-level names to /tmp/pip-pip-egg-info-oozmygbh/nwalign.egg-info/top_level.txt 2025-09-07T20:32:33,090 writing manifest file '/tmp/pip-pip-egg-info-oozmygbh/nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:33,387 reading manifest file '/tmp/pip-pip-egg-info-oozmygbh/nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:33,390 writing manifest file '/tmp/pip-pip-egg-info-oozmygbh/nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:33,528 Preparing metadata (setup.py): finished with status 'done' 2025-09-07T20:32:33,532 Source in /tmp/pip-wheel-mawpifay/nwalign_be110cf0b00e41eb812f16faaa6fb989 has version 0.3.0, which satisfies requirement nwalign==0.3.0 from https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz 2025-09-07T20:32:33,533 Removed nwalign==0.3.0 from https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-4vyp5ft3' 2025-09-07T20:32:33,536 Created temporary directory: /tmp/pip-unpack-_nq264dw 2025-09-07T20:32:33,537 Created temporary directory: /tmp/pip-unpack-klw74xv8 2025-09-07T20:32:33,537 Building wheels for collected packages: nwalign 2025-09-07T20:32:33,538 Created temporary directory: /tmp/pip-wheel-5nb3zzyk 2025-09-07T20:32:33,539 DEPRECATION: Building 'nwalign' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'nwalign'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-07T20:32:33,540 Building wheel for nwalign (setup.py): started 2025-09-07T20:32:33,540 Destination directory: /tmp/pip-wheel-5nb3zzyk 2025-09-07T20:32:33,540 Running command python setup.py bdist_wheel 2025-09-07T20:32:34,449 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-07T20:32:34,449 warnings.warn(msg) 2025-09-07T20:32:34,841 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T20:32:34,841 !! 2025-09-07T20:32:34,841 ******************************************************************************** 2025-09-07T20:32:34,841 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T20:32:34,842 License :: OSI Approved :: BSD License 2025-09-07T20:32:34,842 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T20:32:34,842 ******************************************************************************** 2025-09-07T20:32:34,842 !! 2025-09-07T20:32:34,842 self._finalize_license_expression() 2025-09-07T20:32:34,843 running bdist_wheel 2025-09-07T20:32:35,226 running build 2025-09-07T20:32:35,226 running build_py 2025-09-07T20:32:35,304 creating build/lib.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:35,304 copying nwalign/__init__.py -> build/lib.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:35,305 copying nwalign/nwserver.py -> build/lib.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:35,305 running egg_info 2025-09-07T20:32:35,382 writing nwalign.egg-info/PKG-INFO 2025-09-07T20:32:35,384 writing dependency_links to nwalign.egg-info/dependency_links.txt 2025-09-07T20:32:35,384 writing entry points to nwalign.egg-info/entry_points.txt 2025-09-07T20:32:35,385 writing requirements to nwalign.egg-info/requires.txt 2025-09-07T20:32:35,385 writing top-level names to nwalign.egg-info/top_level.txt 2025-09-07T20:32:35,463 reading manifest file 'nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:35,467 writing manifest file 'nwalign.egg-info/SOURCES.txt' 2025-09-07T20:32:35,468 copying nwalign/cnwalign.c -> build/lib.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:35,470 running build_ext 2025-09-07T20:32:35,802 building 'nwalign/cnwalign' extension 2025-09-07T20:32:35,803 creating build/temp.linux-armv7l-cpython-313/nwalign 2025-09-07T20:32:35,803 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -Inwalign -I/usr/include/python3.13 -c nwalign/cnwalign.c -o build/temp.linux-armv7l-cpython-313/nwalign/cnwalign.o 2025-09-07T20:32:36,284 nwalign/cnwalign.c: In function ‘__pyx_f_7nwalign_8cnwalign_read_matrix’: 2025-09-07T20:32:36,286 nwalign/cnwalign.c:1603:15: error: implicit declaration of function ‘PyEval_CallObjectWithKeywords’ [-Wimplicit-function-declaration] 2025-09-07T20:32:36,286 1603 | __pyx_t_8 = PyEval_CallObjectWithKeywords(__pyx_t_5, __pyx_t_2, ((PyObject *)__pyx_t_6)); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 74; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,286 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,287 nwalign/cnwalign.c:1603:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,288 1603 | __pyx_t_8 = PyEval_CallObjectWithKeywords(__pyx_t_5, __pyx_t_2, ((PyObject *)__pyx_t_6)); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 74; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,288 | ^ 2025-09-07T20:32:36,300 nwalign/cnwalign.c:1326:14: warning: variable ‘__pyx_bshape_1_a’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:36,300 1326 | Py_ssize_t __pyx_bshape_1_a = 0; 2025-09-07T20:32:36,300 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,301 nwalign/cnwalign.c:1325:14: warning: variable ‘__pyx_bshape_0_a’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:36,301 1325 | Py_ssize_t __pyx_bshape_0_a = 0; 2025-09-07T20:32:36,301 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,302 nwalign/cnwalign.c:1324:14: warning: variable ‘__pyx_bstride_1_a’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:36,303 1324 | Py_ssize_t __pyx_bstride_1_a = 0; 2025-09-07T20:32:36,303 | ^~~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,304 nwalign/cnwalign.c:1323:14: warning: variable ‘__pyx_bstride_0_a’ set but not used [-Wunused-but-set-variable] 2025-09-07T20:32:36,304 1323 | Py_ssize_t __pyx_bstride_0_a = 0; 2025-09-07T20:32:36,304 | ^~~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,312 nwalign/cnwalign.c: In function ‘__pyx_pf_7nwalign_8cnwalign_global_align’: 2025-09-07T20:32:36,314 nwalign/cnwalign.c:2343:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,314 2343 | __pyx_t_10 = PyEval_CallObjectWithKeywords(__pyx_t_7, __pyx_t_2, ((PyObject *)__pyx_t_8)); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 128; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,314 | ^ 2025-09-07T20:32:36,319 nwalign/cnwalign.c:2396:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,319 2396 | __pyx_t_9 = PyEval_CallObjectWithKeywords(__pyx_t_8, __pyx_t_10, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 129; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,319 | ^ 2025-09-07T20:32:36,324 nwalign/cnwalign.c:2454:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,324 2454 | __pyx_t_7 = PyEval_CallObjectWithKeywords(__pyx_t_2, __pyx_t_10, ((PyObject *)__pyx_t_8)); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,324 | ^ 2025-09-07T20:32:36,329 nwalign/cnwalign.c:2512:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,329 2512 | __pyx_t_9 = PyEval_CallObjectWithKeywords(__pyx_t_8, __pyx_t_10, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,330 | ^ 2025-09-07T20:32:36,340 nwalign/cnwalign.c:2672:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,340 2672 | __pyx_t_25 = PyEval_CallObjectWithKeywords(__pyx_t_8, __pyx_t_7, ((PyObject *)__pyx_t_10)); if (unlikely(!__pyx_t_25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 143; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,340 | ^ 2025-09-07T20:32:36,346 nwalign/cnwalign.c:2734:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,346 2734 | __pyx_t_24 = PyEval_CallObjectWithKeywords(__pyx_t_2, __pyx_t_7, ((PyObject *)__pyx_t_10)); if (unlikely(!__pyx_t_24)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,346 | ^ 2025-09-07T20:32:36,375 nwalign/cnwalign.c:3062:16: error: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2025-09-07T20:32:36,376 3062 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2025-09-07T20:32:36,376 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,376 | PyBytes_FromStringAndSize 2025-09-07T20:32:36,379 nwalign/cnwalign.c:3062:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,380 3062 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2025-09-07T20:32:36,380 | ^ 2025-09-07T20:32:36,383 nwalign/cnwalign.c:3071:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,383 3071 | __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2025-09-07T20:32:36,383 | ^ 2025-09-07T20:32:36,407 nwalign/cnwalign.c:3080:21: error: implicit declaration of function ‘PyString_AS_STRING’; did you mean ‘PyBytes_AS_STRING’? [-Wimplicit-function-declaration] 2025-09-07T20:32:36,408 3080 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2025-09-07T20:32:36,408 | ^~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,408 | PyBytes_AS_STRING 2025-09-07T20:32:36,411 nwalign/cnwalign.c:3080:19: error: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,411 3080 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2025-09-07T20:32:36,412 | ^ 2025-09-07T20:32:36,415 nwalign/cnwalign.c:3089:19: error: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,415 3089 | __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai); 2025-09-07T20:32:36,415 | ^ 2025-09-07T20:32:36,449 nwalign/cnwalign.c:3294:3: error: implicit declaration of function ‘_PyString_Resize’ [-Wimplicit-function-declaration] 2025-09-07T20:32:36,449 3294 | _PyString_Resize((&__pyx_v_aj), __pyx_v_align_counter); 2025-09-07T20:32:36,449 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,456 nwalign/cnwalign.c: In function ‘__pyx_f_7nwalign_8cnwalign_global_align_no_matrix’: 2025-09-07T20:32:36,459 nwalign/cnwalign.c:3654:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,460 3654 | __pyx_t_6 = PyEval_CallObjectWithKeywords(__pyx_t_3, __pyx_t_2, ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 247; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,460 | ^ 2025-09-07T20:32:36,466 nwalign/cnwalign.c:3707:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,466 3707 | __pyx_t_5 = PyEval_CallObjectWithKeywords(__pyx_t_4, __pyx_t_6, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 248; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,466 | ^ 2025-09-07T20:32:36,472 nwalign/cnwalign.c:3765:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,473 3765 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_2, __pyx_t_6, ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 250; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,473 | ^ 2025-09-07T20:32:36,479 nwalign/cnwalign.c:3823:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,479 3823 | __pyx_t_5 = PyEval_CallObjectWithKeywords(__pyx_t_4, __pyx_t_6, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 251; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,479 | ^ 2025-09-07T20:32:36,491 nwalign/cnwalign.c:3948:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,491 3948 | __pyx_t_15 = PyEval_CallObjectWithKeywords(__pyx_t_6, __pyx_t_4, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 259; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,491 | ^ 2025-09-07T20:32:36,498 nwalign/cnwalign.c:4004:13: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,498 4004 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_15, __pyx_t_4, ((PyObject *)__pyx_t_5)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 260; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,498 | ^ 2025-09-07T20:32:36,508 nwalign/cnwalign.c:4363:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,508 4363 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2025-09-07T20:32:36,508 | ^ 2025-09-07T20:32:36,513 nwalign/cnwalign.c:4372:14: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,513 4372 | __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2025-09-07T20:32:36,514 | ^ 2025-09-07T20:32:36,518 nwalign/cnwalign.c:4381:19: error: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,518 4381 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2025-09-07T20:32:36,518 | ^ 2025-09-07T20:32:36,523 nwalign/cnwalign.c:4390:19: error: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,523 4390 | __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai); 2025-09-07T20:32:36,524 | ^ 2025-09-07T20:32:36,557 nwalign/cnwalign.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-07T20:32:36,565 nwalign/cnwalign.c:4883:69: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-07T20:32:36,565 4883 | __pyx_t_2 = (!PyArray_CHKFLAGS(((PyArrayObject *)__pyx_v_self), NPY_C_CONTIGUOUS)); 2025-09-07T20:32:36,565 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,565 | PyBUF_C_CONTIGUOUS 2025-09-07T20:32:36,566 nwalign/cnwalign.c:4883:69: note: each undeclared identifier is reported only once for each function it appears in 2025-09-07T20:32:36,595 nwalign/cnwalign.c:4929:69: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-07T20:32:36,595 4929 | __pyx_t_1 = (!PyArray_CHKFLAGS(((PyArrayObject *)__pyx_v_self), NPY_F_CONTIGUOUS)); 2025-09-07T20:32:36,595 | ^~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,595 | PyBUF_F_CONTIGUOUS 2025-09-07T20:32:36,606 nwalign/cnwalign.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-07T20:32:36,613 nwalign/cnwalign.c:5892:40: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-07T20:32:36,613 5892 | if (likely(((PyObject *)__pyx_v_descr->names) != Py_None)) { 2025-09-07T20:32:36,613 | ^~ 2025-09-07T20:32:36,613 nwalign/cnwalign.c:249:41: note: in definition of macro ‘likely’ 2025-09-07T20:32:36,613 249 | #define likely(x) __builtin_expect(!!(x), 1) 2025-09-07T20:32:36,613 | ^ 2025-09-07T20:32:36,620 nwalign/cnwalign.c:5893:58: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-07T20:32:36,620 5893 | __pyx_t_1 = 0; __pyx_t_2 = ((PyObject *)__pyx_v_descr->names); __Pyx_INCREF(__pyx_t_2); 2025-09-07T20:32:36,620 | ^~ 2025-09-07T20:32:36,629 nwalign/cnwalign.c:5911:47: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-07T20:32:36,629 5911 | __pyx_t_3 = PyObject_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (!__pyx_t_3) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 782; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-07T20:32:36,629 | ^~ 2025-09-07T20:32:36,641 nwalign/cnwalign.c:6097:41: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-07T20:32:36,641 6097 | (__pyx_v_offset[0]) += __pyx_v_child->elsize; 2025-09-07T20:32:36,641 | ^~ 2025-09-07T20:32:36,688 nwalign/cnwalign.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-07T20:32:36,699 nwalign/cnwalign.c:7079:25: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-07T20:32:36,699 7079 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2025-09-07T20:32:36,699 | ^~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,699 | PyDict_GET_SIZE 2025-09-07T20:32:36,734 nwalign/cnwalign.c: In function ‘__Pyx_ErrRestore’: 2025-09-07T20:32:36,742 nwalign/cnwalign.c:7601:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:32:36,742 7601 | tmp_type = tstate->curexc_type; 2025-09-07T20:32:36,743 | ^~ 2025-09-07T20:32:36,751 nwalign/cnwalign.c:7602:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:32:36,751 7602 | tmp_value = tstate->curexc_value; 2025-09-07T20:32:36,751 | ^~ 2025-09-07T20:32:36,759 nwalign/cnwalign.c:7603:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:36,759 7603 | tmp_tb = tstate->curexc_traceback; 2025-09-07T20:32:36,759 | ^~ 2025-09-07T20:32:36,768 nwalign/cnwalign.c:7604:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:32:36,768 7604 | tstate->curexc_type = type; 2025-09-07T20:32:36,768 | ^~ 2025-09-07T20:32:36,776 nwalign/cnwalign.c:7605:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:32:36,776 7605 | tstate->curexc_value = value; 2025-09-07T20:32:36,776 | ^~ 2025-09-07T20:32:36,784 nwalign/cnwalign.c:7606:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:36,785 7606 | tstate->curexc_traceback = tb; 2025-09-07T20:32:36,785 | ^~ 2025-09-07T20:32:36,785 nwalign/cnwalign.c: In function ‘__Pyx_ErrFetch’: 2025-09-07T20:32:36,793 nwalign/cnwalign.c:7614:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:32:36,793 7614 | *type = tstate->curexc_type; 2025-09-07T20:32:36,793 | ^~ 2025-09-07T20:32:36,802 nwalign/cnwalign.c:7615:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:32:36,802 7615 | *value = tstate->curexc_value; 2025-09-07T20:32:36,802 | ^~ 2025-09-07T20:32:36,810 nwalign/cnwalign.c:7616:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:36,810 7616 | *tb = tstate->curexc_traceback; 2025-09-07T20:32:36,810 | ^~ 2025-09-07T20:32:36,819 nwalign/cnwalign.c:7618:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-07T20:32:36,819 7618 | tstate->curexc_type = 0; 2025-09-07T20:32:36,819 | ^~ 2025-09-07T20:32:36,827 nwalign/cnwalign.c:7619:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-07T20:32:36,827 7619 | tstate->curexc_value = 0; 2025-09-07T20:32:36,827 | ^~ 2025-09-07T20:32:36,835 nwalign/cnwalign.c:7620:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:36,836 7620 | tstate->curexc_traceback = 0; 2025-09-07T20:32:36,836 | ^~ 2025-09-07T20:32:36,853 nwalign/cnwalign.c: In function ‘__Pyx_Raise’: 2025-09-07T20:32:36,861 nwalign/cnwalign.c:7838:34: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:36,861 7838 | PyObject* tmp_tb = tstate->curexc_traceback; 2025-09-07T20:32:36,861 | ^~ 2025-09-07T20:32:36,869 nwalign/cnwalign.c:7841:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-07T20:32:36,870 7841 | tstate->curexc_traceback = tb; 2025-09-07T20:32:36,870 | ^~ 2025-09-07T20:32:36,906 nwalign/cnwalign.c: In function ‘__Pyx_AddTraceback’: 2025-09-07T20:32:36,914 nwalign/cnwalign.c:8484:5: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-07T20:32:36,915 8484 | py_code = PyCode_New( 2025-09-07T20:32:36,915 | ^~~~~~~ 2025-09-07T20:32:36,915 In file included from /usr/include/python3.13/Python.h:101, 2025-09-07T20:32:36,915 from nwalign/cnwalign.c:4: 2025-09-07T20:32:36,915 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-07T20:32:36,915 213 | PyCode_New( 2025-09-07T20:32:36,915 | ^~~~~~~~~~ 2025-09-07T20:32:36,924 nwalign/cnwalign.c:8500:9: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-07T20:32:36,924 8500 | __pyx_lineno, /*int firstlineno,*/ 2025-09-07T20:32:36,924 | ^~~~~~~~~~~~ 2025-09-07T20:32:36,924 | | 2025-09-07T20:32:36,924 | int 2025-09-07T20:32:36,924 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-07T20:32:36,925 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-07T20:32:36,925 | ~~~~~~~~~~^ 2025-09-07T20:32:36,933 nwalign/cnwalign.c:8501:9: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-07T20:32:36,933 8501 | __pyx_empty_bytes /*PyObject *lnotab*/ 2025-09-07T20:32:36,933 | ^~~~~~~~~~~~~~~~~ 2025-09-07T20:32:36,933 | | 2025-09-07T20:32:36,933 | PyObject * {aka struct _object *} 2025-09-07T20:32:36,933 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-07T20:32:36,933 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-07T20:32:36,934 | ~~~~^ 2025-09-07T20:32:36,943 nwalign/cnwalign.c:8484:15: error: too few arguments to function ‘PyCode_New’ 2025-09-07T20:32:36,943 8484 | py_code = PyCode_New( 2025-09-07T20:32:36,943 | ^~~~~~~~~~ 2025-09-07T20:32:36,943 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-07T20:32:36,943 213 | PyCode_New( 2025-09-07T20:32:36,943 | ^~~~~~~~~~ 2025-09-07T20:32:36,956 nwalign/cnwalign.c:8511:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-07T20:32:36,956 8511 | py_frame->f_lineno = __pyx_lineno; 2025-09-07T20:32:36,956 | ^~ 2025-09-07T20:32:37,041 nwalign/cnwalign.c: At top level: 2025-09-07T20:32:37,048 nwalign/cnwalign.c:5584:13: warning: ‘__pyx_pf_5numpy_7ndarray___releasebuffer__’ defined but not used [-Wunused-function] 2025-09-07T20:32:37,048 5584 | static void __pyx_pf_5numpy_7ndarray___releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { 2025-09-07T20:32:37,048 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:37,053 nwalign/cnwalign.c:4779:12: warning: ‘__pyx_pf_5numpy_7ndarray___getbuffer__’ defined but not used [-Wunused-function] 2025-09-07T20:32:37,053 4779 | static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { 2025-09-07T20:32:37,054 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-07T20:32:37,060 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-07T20:32:37,233 ERROR: python setup.py bdist_wheel exited with 1 2025-09-07T20:32:37,245 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-07T20:32:37,245 exec(compile('"'"''"'"''"'"' 2025-09-07T20:32:37,245 # This is -- a caller that pip uses to run setup.py 2025-09-07T20:32:37,245 # 2025-09-07T20:32:37,245 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-07T20:32:37,245 # import from `distutils.core` to work with newer packaging standards. 2025-09-07T20:32:37,245 # - It provides a clear error message when setuptools is not installed. 2025-09-07T20:32:37,245 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-07T20:32:37,245 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-07T20:32:37,245 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-07T20:32:37,245 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-07T20:32:37,245 import os, sys, tokenize, traceback 2025-09-07T20:32:37,245 2025-09-07T20:32:37,245 try: 2025-09-07T20:32:37,245 import setuptools 2025-09-07T20:32:37,245 except ImportError: 2025-09-07T20:32:37,245 print( 2025-09-07T20:32:37,245 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-07T20:32:37,245 "the build environment with exception:", 2025-09-07T20:32:37,245 file=sys.stderr, 2025-09-07T20:32:37,245 ) 2025-09-07T20:32:37,245 traceback.print_exc() 2025-09-07T20:32:37,245 sys.exit(1) 2025-09-07T20:32:37,245 2025-09-07T20:32:37,245 __file__ = %r 2025-09-07T20:32:37,245 sys.argv[0] = __file__ 2025-09-07T20:32:37,245 2025-09-07T20:32:37,245 if os.path.exists(__file__): 2025-09-07T20:32:37,245 filename = __file__ 2025-09-07T20:32:37,245 with tokenize.open(__file__) as f: 2025-09-07T20:32:37,245 setup_py_code = f.read() 2025-09-07T20:32:37,245 else: 2025-09-07T20:32:37,245 filename = "" 2025-09-07T20:32:37,245 setup_py_code = "from setuptools import setup; setup()" 2025-09-07T20:32:37,245 2025-09-07T20:32:37,245 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T20:32:37,245 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-mawpifay/nwalign_be110cf0b00e41eb812f16faaa6fb989/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-5nb3zzyk[/] 2025-09-07T20:32:37,245 [bold magenta]cwd[/]: /tmp/pip-wheel-mawpifay/nwalign_be110cf0b00e41eb812f16faaa6fb989/ 2025-09-07T20:32:37,246 Building wheel for nwalign (setup.py): finished with status 'error' 2025-09-07T20:32:37,247 ERROR: Failed building wheel for nwalign 2025-09-07T20:32:37,247 Running setup.py clean for nwalign 2025-09-07T20:32:37,248 Running command python setup.py clean 2025-09-07T20:32:38,158 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-07T20:32:38,158 warnings.warn(msg) 2025-09-07T20:32:38,548 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T20:32:38,548 !! 2025-09-07T20:32:38,548 ******************************************************************************** 2025-09-07T20:32:38,549 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T20:32:38,549 License :: OSI Approved :: BSD License 2025-09-07T20:32:38,549 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T20:32:38,549 ******************************************************************************** 2025-09-07T20:32:38,549 !! 2025-09-07T20:32:38,549 self._finalize_license_expression() 2025-09-07T20:32:38,626 running clean 2025-09-07T20:32:38,772 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-07T20:32:38,773 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-07T20:32:38,773 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-07T20:32:38,773 'build/scripts-3.13' does not exist -- can't clean it 2025-09-07T20:32:38,773 removing 'build' 2025-09-07T20:32:38,911 Failed to build nwalign 2025-09-07T20:32:38,912 ERROR: Failed to build one or more wheels 2025-09-07T20:32:38,913 Exception information: 2025-09-07T20:32:38,913 Traceback (most recent call last): 2025-09-07T20:32:38,913 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-07T20:32:38,913 status = _inner_run() 2025-09-07T20:32:38,913 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-07T20:32:38,913 return self.run(options, args) 2025-09-07T20:32:38,913 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-07T20:32:38,913 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-07T20:32:38,913 return func(self, options, args) 2025-09-07T20:32:38,913 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-07T20:32:38,913 raise CommandError("Failed to build one or more wheels") 2025-09-07T20:32:38,913 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-07T20:32:38,917 Removed build tracker: '/tmp/pip-build-tracker-4vyp5ft3'