2025-09-07T20:37:09,449 Created temporary directory: /tmp/pip-build-tracker-tbmd2fgs 2025-09-07T20:37:09,449 Initialized build tracking at /tmp/pip-build-tracker-tbmd2fgs 2025-09-07T20:37:09,450 Created build tracker: /tmp/pip-build-tracker-tbmd2fgs 2025-09-07T20:37:09,450 Entered build tracker: /tmp/pip-build-tracker-tbmd2fgs 2025-09-07T20:37:09,450 Created temporary directory: /tmp/pip-wheel-mexufomm 2025-09-07T20:37:09,453 Created temporary directory: /tmp/pip-ephem-wheel-cache-k9fqy_9r 2025-09-07T20:37:09,513 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-07T20:37:09,515 2 location(s) to search for versions of cogent: 2025-09-07T20:37:09,515 * https://pypi.org/simple/cogent/ 2025-09-07T20:37:09,515 * https://www.piwheels.org/simple/cogent/ 2025-09-07T20:37:09,516 Fetching project page and analyzing links: https://pypi.org/simple/cogent/ 2025-09-07T20:37:09,516 Getting page https://pypi.org/simple/cogent/ 2025-09-07T20:37:09,517 Found index url https://pypi.org/simple/ 2025-09-07T20:37:09,589 Fetched page https://pypi.org/simple/cogent/ as application/vnd.pypi.simple.v1+json 2025-09-07T20:37:09,592 Skipping link: Missing project version for cogent: https://files.pythonhosted.org/packages/7f/a9/f66918d09bf853514b6df555caf25adfd511943cecca7e3a7c0c5bc38817/PyCogent-1.0.tar.gz (from https://pypi.org/simple/cogent/) 2025-09-07T20:37:09,592 Skipping link: Missing project version for cogent: https://files.pythonhosted.org/packages/d4/c5/2cc30e0e88388cef02edc5c1e6a101eec461dc6c2b52e45c23bf14942fd3/PyCogent-1.0.1.tgz (from https://pypi.org/simple/cogent/) 2025-09-07T20:37:09,592 Found link https://files.pythonhosted.org/packages/28/ac/0d1553fc7397f8dbdee0e3894b743b7cfb74949806f1467b805646b1af67/cogent-1.3.tgz (from https://pypi.org/simple/cogent/), version: 1.3 2025-09-07T20:37:09,592 Found link https://files.pythonhosted.org/packages/63/ee/0937a28bb8059da523cf737013bb7c935faf2f368707383b68eec08c5f86/cogent-1.3.1.tar.gz (from https://pypi.org/simple/cogent/), version: 1.3.1 2025-09-07T20:37:09,592 Found link https://files.pythonhosted.org/packages/4f/9d/5907c457edc2541d3712c129ad3e10f6f16d0e62bd64854506fddb916b51/cogent-1.4.tar.gz (from https://pypi.org/simple/cogent/), version: 1.4 2025-09-07T20:37:09,593 Found link https://files.pythonhosted.org/packages/42/ae/cb01cd9bc6b78ecdb982bae886e753d84443e4ff8cc4259d7a5a87a8c41b/cogent-1.4.1.tgz (from https://pypi.org/simple/cogent/), version: 1.4.1 2025-09-07T20:37:09,593 Found link https://files.pythonhosted.org/packages/61/15/fdc8dd28e798a3c43159bf3c25dd00edbc459cd1e40c5f06b51a1f5e21cf/cogent-1.5.tgz (from https://pypi.org/simple/cogent/), version: 1.5 2025-09-07T20:37:09,593 Found link https://files.pythonhosted.org/packages/ec/81/0d0d43e26f8f8e05db17ecf2f500125c3993b754a3f99c87d17ace377e83/cogent-1.5.1.tgz (from https://pypi.org/simple/cogent/), version: 1.5.1 2025-09-07T20:37:09,593 Found link https://files.pythonhosted.org/packages/62/73/85715bc1efcdaf8410fb3ba6bba5d6ebfd7e7cdbac539c8749138510a1ab/cogent-1.5.2.tgz (from https://pypi.org/simple/cogent/), version: 1.5.2 2025-09-07T20:37:09,594 Found link https://files.pythonhosted.org/packages/1f/9f/c6f6afe09a3d62a6e809c7745413ffff0f1e8e04d88ab7b56faedf31fe28/cogent-1.5.3.tgz (from https://pypi.org/simple/cogent/), version: 1.5.3 2025-09-07T20:37:09,594 Skipping link: No binaries permitted for cogent: https://files.pythonhosted.org/packages/ca/78/fd5c2b8f8c822145fa795acc92451c2797a675113fbc6771495edfa77e0b/cogent-1.9-cp27-cp27m-macosx_10_5_x86_64.whl (from https://pypi.org/simple/cogent/) 2025-09-07T20:37:09,594 Found link https://files.pythonhosted.org/packages/03/9e/a7156965da5edc34c3c07661c3b4bc4259caa3d9dcecaa5f7f3ff51eecd7/cogent-1.9.tar.gz (from https://pypi.org/simple/cogent/), version: 1.9 2025-09-07T20:37:09,594 Fetching project page and analyzing links: https://www.piwheels.org/simple/cogent/ 2025-09-07T20:37:09,595 Getting page https://www.piwheels.org/simple/cogent/ 2025-09-07T20:37:09,595 Found index url https://www.piwheels.org/simple/ 2025-09-07T20:37:09,863 Fetched page https://www.piwheels.org/simple/cogent/ as text/html 2025-09-07T20:37:09,865 Skipping link: not a file: https://www.piwheels.org/simple/cogent/ 2025-09-07T20:37:09,865 Skipping link: not a file: https://pypi.org/simple/cogent/ 2025-09-07T20:37:09,902 Given no hashes to check 1 links for project 'cogent': discarding no candidates 2025-09-07T20:37:09,903 Collecting cogent==1.4.1 2025-09-07T20:37:09,904 Created temporary directory: /tmp/pip-unpack-vsffusa5 2025-09-07T20:37:10,061 Downloading cogent-1.4.1.tgz (2.6 MB) 2025-09-07T20:37:11,593 Added cogent==1.4.1 from https://files.pythonhosted.org/packages/42/ae/cb01cd9bc6b78ecdb982bae886e753d84443e4ff8cc4259d7a5a87a8c41b/cogent-1.4.1.tgz to build tracker '/tmp/pip-build-tracker-tbmd2fgs' 2025-09-07T20:37:11,594 Running setup.py (path:/tmp/pip-wheel-mexufomm/cogent_49b2a86545ea4ff681674bdf211fedf4/setup.py) egg_info for package cogent 2025-09-07T20:37:11,594 Created temporary directory: /tmp/pip-pip-egg-info-bgebmjsz 2025-09-07T20:37:11,594 Preparing metadata (setup.py): started 2025-09-07T20:37:11,595 Running command python setup.py egg_info 2025-09-07T20:37:12,134 /tmp/pip-wheel-mexufomm/cogent_49b2a86545ea4ff681674bdf211fedf4/setup.py:27: SyntaxWarning: invalid escape sequence '\d' 2025-09-07T20:37:12,134 numpy_version = re.split("[^\d]", numpy.__version__) 2025-09-07T20:37:12,137 Traceback (most recent call last): 2025-09-07T20:37:12,138 File "", line 2, in 2025-09-07T20:37:12,138 exec(compile(''' 2025-09-07T20:37:12,138 ~~~~^^^^^^^^^^^^ 2025-09-07T20:37:12,138 # This is -- a caller that pip uses to run setup.py 2025-09-07T20:37:12,138 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,138 ...<32 lines>... 2025-09-07T20:37:12,138 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T20:37:12,139 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,139 ''' % ('/tmp/pip-wheel-mexufomm/cogent_49b2a86545ea4ff681674bdf211fedf4/setup.py',), "", "exec")) 2025-09-07T20:37:12,139 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,139 File "", line 35, in 2025-09-07T20:37:12,139 File "/tmp/pip-wheel-mexufomm/cogent_49b2a86545ea4ff681674bdf211fedf4/setup.py", line 65 2025-09-07T20:37:12,139 print "Failed to build html due to ImportErrors for sphinx" 2025-09-07T20:37:12,139 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,139 SyntaxError: Missing parentheses in call to 'print'. Did you mean print(...)? 2025-09-07T20:37:12,223 ERROR: python setup.py egg_info exited with 1 2025-09-07T20:37:12,234 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-07T20:37:12,234 exec(compile('"'"''"'"''"'"' 2025-09-07T20:37:12,234 # This is -- a caller that pip uses to run setup.py 2025-09-07T20:37:12,234 # 2025-09-07T20:37:12,234 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-07T20:37:12,234 # import from `distutils.core` to work with newer packaging standards. 2025-09-07T20:37:12,234 # - It provides a clear error message when setuptools is not installed. 2025-09-07T20:37:12,234 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-07T20:37:12,234 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-07T20:37:12,234 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-07T20:37:12,234 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-07T20:37:12,234 import os, sys, tokenize, traceback 2025-09-07T20:37:12,234 2025-09-07T20:37:12,234 try: 2025-09-07T20:37:12,234 import setuptools 2025-09-07T20:37:12,234 except ImportError: 2025-09-07T20:37:12,234 print( 2025-09-07T20:37:12,234 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-07T20:37:12,234 "the build environment with exception:", 2025-09-07T20:37:12,234 file=sys.stderr, 2025-09-07T20:37:12,234 ) 2025-09-07T20:37:12,234 traceback.print_exc() 2025-09-07T20:37:12,234 sys.exit(1) 2025-09-07T20:37:12,234 2025-09-07T20:37:12,234 __file__ = %r 2025-09-07T20:37:12,234 sys.argv[0] = __file__ 2025-09-07T20:37:12,234 2025-09-07T20:37:12,234 if os.path.exists(__file__): 2025-09-07T20:37:12,234 filename = __file__ 2025-09-07T20:37:12,234 with tokenize.open(__file__) as f: 2025-09-07T20:37:12,234 setup_py_code = f.read() 2025-09-07T20:37:12,234 else: 2025-09-07T20:37:12,234 filename = "" 2025-09-07T20:37:12,234 setup_py_code = "from setuptools import setup; setup()" 2025-09-07T20:37:12,234 2025-09-07T20:37:12,234 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T20:37:12,234 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-mexufomm/cogent_49b2a86545ea4ff681674bdf211fedf4/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-bgebmjsz[/] 2025-09-07T20:37:12,235 [bold magenta]cwd[/]: /tmp/pip-wheel-mexufomm/cogent_49b2a86545ea4ff681674bdf211fedf4/ 2025-09-07T20:37:12,235 Preparing metadata (setup.py): finished with status 'error' 2025-09-07T20:37:12,236 ERROR: metadata generation failed 2025-09-07T20:37:12,240 Exception information: 2025-09-07T20:37:12,240 Traceback (most recent call last): 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-07T20:37:12,240 call_subprocess( 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~^ 2025-09-07T20:37:12,240 args, 2025-09-07T20:37:12,240 ^^^^^ 2025-09-07T20:37:12,240 ...<2 lines>... 2025-09-07T20:37:12,240 spinner=spinner, 2025-09-07T20:37:12,240 ^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 ) 2025-09-07T20:37:12,240 ^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-07T20:37:12,240 raise error 2025-09-07T20:37:12,240 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-07T20:37:12,240 2025-09-07T20:37:12,240 The above exception was the direct cause of the following exception: 2025-09-07T20:37:12,240 2025-09-07T20:37:12,240 Traceback (most recent call last): 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-07T20:37:12,240 status = _inner_run() 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-07T20:37:12,240 return self.run(options, args) 2025-09-07T20:37:12,240 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-07T20:37:12,240 return func(self, options, args) 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-07T20:37:12,240 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-07T20:37:12,240 result = self._result = resolver.resolve( 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~~^ 2025-09-07T20:37:12,240 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-07T20:37:12,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 ) 2025-09-07T20:37:12,240 ^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-07T20:37:12,240 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-07T20:37:12,240 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-07T20:37:12,240 if not criterion.candidates: 2025-09-07T20:37:12,240 ^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-07T20:37:12,240 return bool(self._sequence) 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-07T20:37:12,240 self._bool = any(self) 2025-09-07T20:37:12,240 ~~~^^^^^^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-07T20:37:12,240 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-07T20:37:12,240 ^^^^^^^^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-07T20:37:12,240 candidate = func() 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-07T20:37:12,240 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-07T20:37:12,240 link, template, name, version 2025-09-07T20:37:12,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 ) 2025-09-07T20:37:12,240 ^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-07T20:37:12,240 self._link_candidate_cache[link] = LinkCandidate( 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~^ 2025-09-07T20:37:12,240 link, 2025-09-07T20:37:12,240 ^^^^^ 2025-09-07T20:37:12,240 ...<3 lines>... 2025-09-07T20:37:12,240 version=version, 2025-09-07T20:37:12,240 ^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 ) 2025-09-07T20:37:12,240 ^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-07T20:37:12,240 super().__init__( 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~~^ 2025-09-07T20:37:12,240 link=link, 2025-09-07T20:37:12,240 ^^^^^^^^^^ 2025-09-07T20:37:12,240 ...<4 lines>... 2025-09-07T20:37:12,240 version=version, 2025-09-07T20:37:12,240 ^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 ) 2025-09-07T20:37:12,240 ^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-07T20:37:12,240 self.dist = self._prepare() 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~^^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-07T20:37:12,240 dist = self._prepare_distribution() 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-07T20:37:12,240 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-07T20:37:12,240 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-07T20:37:12,240 dist = _get_prepared_distribution( 2025-09-07T20:37:12,240 req, 2025-09-07T20:37:12,240 ...<3 lines>... 2025-09-07T20:37:12,240 self.check_build_deps, 2025-09-07T20:37:12,240 ) 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-07T20:37:12,240 abstract_dist.prepare_distribution_metadata( 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-07T20:37:12,240 finder, build_isolation, check_build_deps 2025-09-07T20:37:12,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 ) 2025-09-07T20:37:12,240 ^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-07T20:37:12,240 self.req.prepare_metadata() 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-07T20:37:12,240 self.metadata_directory = generate_metadata_legacy( 2025-09-07T20:37:12,240 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-07T20:37:12,240 build_env=self.build_env, 2025-09-07T20:37:12,240 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 ...<3 lines>... 2025-09-07T20:37:12,240 details=details, 2025-09-07T20:37:12,240 ^^^^^^^^^^^^^^^^ 2025-09-07T20:37:12,240 ) 2025-09-07T20:37:12,240 ^ 2025-09-07T20:37:12,240 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-07T20:37:12,240 raise MetadataGenerationFailed(package_details=details) from error 2025-09-07T20:37:12,240 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-07T20:37:12,262 Removed cogent==1.4.1 from https://files.pythonhosted.org/packages/42/ae/cb01cd9bc6b78ecdb982bae886e753d84443e4ff8cc4259d7a5a87a8c41b/cogent-1.4.1.tgz from build tracker '/tmp/pip-build-tracker-tbmd2fgs' 2025-09-07T20:37:12,262 Removed build tracker: '/tmp/pip-build-tracker-tbmd2fgs'