2025-09-07T21:41:54,303 Created temporary directory: /tmp/pip-build-tracker-_prrmjfe 2025-09-07T21:41:54,304 Initialized build tracking at /tmp/pip-build-tracker-_prrmjfe 2025-09-07T21:41:54,304 Created build tracker: /tmp/pip-build-tracker-_prrmjfe 2025-09-07T21:41:54,304 Entered build tracker: /tmp/pip-build-tracker-_prrmjfe 2025-09-07T21:41:54,304 Created temporary directory: /tmp/pip-wheel-4car0zdv 2025-09-07T21:41:54,307 Created temporary directory: /tmp/pip-ephem-wheel-cache-ksxcct0p 2025-09-07T21:41:54,362 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-07T21:41:54,364 2 location(s) to search for versions of gtf-to-genes: 2025-09-07T21:41:54,364 * https://pypi.org/simple/gtf-to-genes/ 2025-09-07T21:41:54,364 * https://www.piwheels.org/simple/gtf-to-genes/ 2025-09-07T21:41:54,364 Fetching project page and analyzing links: https://pypi.org/simple/gtf-to-genes/ 2025-09-07T21:41:54,365 Getting page https://pypi.org/simple/gtf-to-genes/ 2025-09-07T21:41:54,366 Found index url https://pypi.org/simple/ 2025-09-07T21:41:54,436 Fetched page https://pypi.org/simple/gtf-to-genes/ as application/vnd.pypi.simple.v1+json 2025-09-07T21:41:54,438 Found link https://files.pythonhosted.org/packages/db/b2/41b8f386273680549587f8e4ac52d402982bd8631a07f011d39c1c300e38/gtf_to_genes-1.0beta.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.0beta 2025-09-07T21:41:54,438 Found link https://files.pythonhosted.org/packages/d8/9b/dbb884d7ddba138899608665954b0da8a749127f9d800fb1b67c606acf67/gtf_to_genes-1.0beta2.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.0beta2 2025-09-07T21:41:54,438 Found link https://files.pythonhosted.org/packages/b7/54/25d3ea7d65001e6ca592abaee4f669c02fa80c10192726cb8edd08986074/gtf_to_genes-1.0.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.0 2025-09-07T21:41:54,438 Found link https://files.pythonhosted.org/packages/21/1b/9bd5233344406bbbdb6f3088607bfd84c0150fa727a96ecd072f2c7d9d71/gtf_to_genes-1.01.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.01 2025-09-07T21:41:54,438 Found link https://files.pythonhosted.org/packages/f7/e1/216e2667156d48e1ceb9a714bf8d3ce2ac9896e86674455d948889d21e8c/gtf_to_genes-1.02.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.02 2025-09-07T21:41:54,439 Found link https://files.pythonhosted.org/packages/b5/01/41b154744520ad0c057eca7aaecb8b0e67239a5c3adadf0a964b3127d9e5/gtf_to_genes-1.03.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.03 2025-09-07T21:41:54,439 Found link https://files.pythonhosted.org/packages/f7/a6/1d457574172d90bdf38697171dd322722ef1bb43c29cc49103acea1c4000/gtf_to_genes-1.04.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.04 2025-09-07T21:41:54,439 Found link https://files.pythonhosted.org/packages/ba/79/2b65639653283fe1f8b8adf147d73ab520f168fa421e97fdec046af585fe/gtf_to_genes-1.06.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.06 2025-09-07T21:41:54,439 Found link https://files.pythonhosted.org/packages/14/bb/5246c5971c7da8cdaf6581472056f0aaab49f3471d0f8fc6bbfb216b5ad5/gtf_to_genes-1.07.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.07 2025-09-07T21:41:54,440 Found link https://files.pythonhosted.org/packages/47/d4/9fbbc912b084790878b7c59f51771b213f9d6a169233f84c9951e41f9770/gtf_to_genes-1.09.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.09 2025-09-07T21:41:54,440 Found link https://files.pythonhosted.org/packages/88/e6/317daf167ba5e076c647ccc3efac284431d404817290e0e7cef2a3e07f6e/gtf_to_genes-1.30.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.30 2025-09-07T21:41:54,440 Found link https://files.pythonhosted.org/packages/91/23/83cc3417984c5ff31d5bebaaed70b054632af16af0274821ffe0146b378a/gtf_to_genes-1.31.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.31 2025-09-07T21:41:54,440 Found link https://files.pythonhosted.org/packages/35/1d/eb9f5d711ee1b9717f8cfc41eadd0086066a08b99e35da95a0a42a1ae266/gtf_to_genes-1.40.tar.gz (from https://pypi.org/simple/gtf-to-genes/), version: 1.40 2025-09-07T21:41:54,441 Fetching project page and analyzing links: https://www.piwheels.org/simple/gtf-to-genes/ 2025-09-07T21:41:54,441 Getting page https://www.piwheels.org/simple/gtf-to-genes/ 2025-09-07T21:41:54,442 Found index url https://www.piwheels.org/simple/ 2025-09-07T21:41:54,555 Fetched page https://www.piwheels.org/simple/gtf-to-genes/ as text/html 2025-09-07T21:41:54,556 Skipping link: not a file: https://www.piwheels.org/simple/gtf-to-genes/ 2025-09-07T21:41:54,556 Skipping link: not a file: https://pypi.org/simple/gtf-to-genes/ 2025-09-07T21:41:54,585 Given no hashes to check 1 links for project 'gtf-to-genes': discarding no candidates 2025-09-07T21:41:54,586 Collecting gtf-to-genes==1.09 2025-09-07T21:41:54,588 Created temporary directory: /tmp/pip-unpack-oq4qwxxw 2025-09-07T21:41:54,725 Downloading gtf_to_genes-1.09.tar.gz (23 kB) 2025-09-07T21:41:54,754 Added gtf-to-genes==1.09 from https://files.pythonhosted.org/packages/47/d4/9fbbc912b084790878b7c59f51771b213f9d6a169233f84c9951e41f9770/gtf_to_genes-1.09.tar.gz to build tracker '/tmp/pip-build-tracker-_prrmjfe' 2025-09-07T21:41:54,756 Running setup.py (path:/tmp/pip-wheel-4car0zdv/gtf-to-genes_a5df2dbbf7c940f38bec485731937966/setup.py) egg_info for package gtf-to-genes 2025-09-07T21:41:54,756 Created temporary directory: /tmp/pip-pip-egg-info-d97as4ep 2025-09-07T21:41:54,756 Preparing metadata (setup.py): started 2025-09-07T21:41:54,757 Running command python setup.py egg_info 2025-09-07T21:41:55,273 Traceback (most recent call last): 2025-09-07T21:41:55,274 File "", line 2, in 2025-09-07T21:41:55,275 exec(compile(''' 2025-09-07T21:41:55,275 ~~~~^^^^^^^^^^^^ 2025-09-07T21:41:55,275 # This is -- a caller that pip uses to run setup.py 2025-09-07T21:41:55,275 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,275 ...<32 lines>... 2025-09-07T21:41:55,275 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T21:41:55,275 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,275 ''' % ('/tmp/pip-wheel-4car0zdv/gtf-to-genes_a5df2dbbf7c940f38bec485731937966/setup.py',), "", "exec")) 2025-09-07T21:41:55,276 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,276 File "", line 35, in 2025-09-07T21:41:55,276 File "/tmp/pip-wheel-4car0zdv/gtf-to-genes_a5df2dbbf7c940f38bec485731937966/setup.py", line 2, in 2025-09-07T21:41:55,276 import ez_setup 2025-09-07T21:41:55,276 ModuleNotFoundError: No module named 'ez_setup' 2025-09-07T21:41:55,360 ERROR: python setup.py egg_info exited with 1 2025-09-07T21:41:55,373 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-07T21:41:55,373 exec(compile('"'"''"'"''"'"' 2025-09-07T21:41:55,373 # This is -- a caller that pip uses to run setup.py 2025-09-07T21:41:55,373 # 2025-09-07T21:41:55,373 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-07T21:41:55,373 # import from `distutils.core` to work with newer packaging standards. 2025-09-07T21:41:55,373 # - It provides a clear error message when setuptools is not installed. 2025-09-07T21:41:55,373 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-07T21:41:55,373 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-07T21:41:55,373 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-07T21:41:55,373 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-07T21:41:55,373 import os, sys, tokenize, traceback 2025-09-07T21:41:55,373 2025-09-07T21:41:55,373 try: 2025-09-07T21:41:55,373 import setuptools 2025-09-07T21:41:55,373 except ImportError: 2025-09-07T21:41:55,373 print( 2025-09-07T21:41:55,373 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-07T21:41:55,373 "the build environment with exception:", 2025-09-07T21:41:55,373 file=sys.stderr, 2025-09-07T21:41:55,373 ) 2025-09-07T21:41:55,373 traceback.print_exc() 2025-09-07T21:41:55,373 sys.exit(1) 2025-09-07T21:41:55,373 2025-09-07T21:41:55,373 __file__ = %r 2025-09-07T21:41:55,373 sys.argv[0] = __file__ 2025-09-07T21:41:55,373 2025-09-07T21:41:55,373 if os.path.exists(__file__): 2025-09-07T21:41:55,373 filename = __file__ 2025-09-07T21:41:55,373 with tokenize.open(__file__) as f: 2025-09-07T21:41:55,373 setup_py_code = f.read() 2025-09-07T21:41:55,373 else: 2025-09-07T21:41:55,373 filename = "" 2025-09-07T21:41:55,373 setup_py_code = "from setuptools import setup; setup()" 2025-09-07T21:41:55,373 2025-09-07T21:41:55,373 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T21:41:55,373 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-4car0zdv/gtf-to-genes_a5df2dbbf7c940f38bec485731937966/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-d97as4ep[/] 2025-09-07T21:41:55,373 [bold magenta]cwd[/]: /tmp/pip-wheel-4car0zdv/gtf-to-genes_a5df2dbbf7c940f38bec485731937966/ 2025-09-07T21:41:55,373 Preparing metadata (setup.py): finished with status 'error' 2025-09-07T21:41:55,374 ERROR: metadata generation failed 2025-09-07T21:41:55,381 Exception information: 2025-09-07T21:41:55,381 Traceback (most recent call last): 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-07T21:41:55,381 call_subprocess( 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~^ 2025-09-07T21:41:55,381 args, 2025-09-07T21:41:55,381 ^^^^^ 2025-09-07T21:41:55,381 ...<2 lines>... 2025-09-07T21:41:55,381 spinner=spinner, 2025-09-07T21:41:55,381 ^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 ) 2025-09-07T21:41:55,381 ^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-07T21:41:55,381 raise error 2025-09-07T21:41:55,381 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-07T21:41:55,381 2025-09-07T21:41:55,381 The above exception was the direct cause of the following exception: 2025-09-07T21:41:55,381 2025-09-07T21:41:55,381 Traceback (most recent call last): 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-07T21:41:55,381 status = _inner_run() 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-07T21:41:55,381 return self.run(options, args) 2025-09-07T21:41:55,381 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-07T21:41:55,381 return func(self, options, args) 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-07T21:41:55,381 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-07T21:41:55,381 result = self._result = resolver.resolve( 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~~^ 2025-09-07T21:41:55,381 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-07T21:41:55,381 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 ) 2025-09-07T21:41:55,381 ^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-07T21:41:55,381 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-07T21:41:55,381 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-07T21:41:55,381 if not criterion.candidates: 2025-09-07T21:41:55,381 ^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-07T21:41:55,381 return bool(self._sequence) 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-07T21:41:55,381 self._bool = any(self) 2025-09-07T21:41:55,381 ~~~^^^^^^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-07T21:41:55,381 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-07T21:41:55,381 ^^^^^^^^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-07T21:41:55,381 candidate = func() 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-07T21:41:55,381 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-07T21:41:55,381 link, template, name, version 2025-09-07T21:41:55,381 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 ) 2025-09-07T21:41:55,381 ^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-07T21:41:55,381 self._link_candidate_cache[link] = LinkCandidate( 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~^ 2025-09-07T21:41:55,381 link, 2025-09-07T21:41:55,381 ^^^^^ 2025-09-07T21:41:55,381 ...<3 lines>... 2025-09-07T21:41:55,381 version=version, 2025-09-07T21:41:55,381 ^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 ) 2025-09-07T21:41:55,381 ^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-07T21:41:55,381 super().__init__( 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~~^ 2025-09-07T21:41:55,381 link=link, 2025-09-07T21:41:55,381 ^^^^^^^^^^ 2025-09-07T21:41:55,381 ...<4 lines>... 2025-09-07T21:41:55,381 version=version, 2025-09-07T21:41:55,381 ^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 ) 2025-09-07T21:41:55,381 ^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-07T21:41:55,381 self.dist = self._prepare() 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~^^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-07T21:41:55,381 dist = self._prepare_distribution() 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-07T21:41:55,381 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-07T21:41:55,381 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-07T21:41:55,381 dist = _get_prepared_distribution( 2025-09-07T21:41:55,381 req, 2025-09-07T21:41:55,381 ...<3 lines>... 2025-09-07T21:41:55,381 self.check_build_deps, 2025-09-07T21:41:55,381 ) 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-07T21:41:55,381 abstract_dist.prepare_distribution_metadata( 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-07T21:41:55,381 finder, build_isolation, check_build_deps 2025-09-07T21:41:55,381 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 ) 2025-09-07T21:41:55,381 ^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-07T21:41:55,381 self.req.prepare_metadata() 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-07T21:41:55,381 self.metadata_directory = generate_metadata_legacy( 2025-09-07T21:41:55,381 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-07T21:41:55,381 build_env=self.build_env, 2025-09-07T21:41:55,381 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 ...<3 lines>... 2025-09-07T21:41:55,381 details=details, 2025-09-07T21:41:55,381 ^^^^^^^^^^^^^^^^ 2025-09-07T21:41:55,381 ) 2025-09-07T21:41:55,381 ^ 2025-09-07T21:41:55,381 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-07T21:41:55,381 raise MetadataGenerationFailed(package_details=details) from error 2025-09-07T21:41:55,381 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-07T21:41:55,404 Removed gtf-to-genes==1.09 from https://files.pythonhosted.org/packages/47/d4/9fbbc912b084790878b7c59f51771b213f9d6a169233f84c9951e41f9770/gtf_to_genes-1.09.tar.gz from build tracker '/tmp/pip-build-tracker-_prrmjfe' 2025-09-07T21:41:55,404 Removed build tracker: '/tmp/pip-build-tracker-_prrmjfe'