2025-09-07T22:43:07,678 Created temporary directory: /tmp/pip-build-tracker-mw75vmq_ 2025-09-07T22:43:07,679 Initialized build tracking at /tmp/pip-build-tracker-mw75vmq_ 2025-09-07T22:43:07,679 Created build tracker: /tmp/pip-build-tracker-mw75vmq_ 2025-09-07T22:43:07,679 Entered build tracker: /tmp/pip-build-tracker-mw75vmq_ 2025-09-07T22:43:07,679 Created temporary directory: /tmp/pip-wheel-ufyyknxp 2025-09-07T22:43:07,682 Created temporary directory: /tmp/pip-ephem-wheel-cache-v220ik5y 2025-09-07T22:43:07,740 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-07T22:43:07,743 2 location(s) to search for versions of bayespy: 2025-09-07T22:43:07,743 * https://pypi.org/simple/bayespy/ 2025-09-07T22:43:07,743 * https://www.piwheels.org/simple/bayespy/ 2025-09-07T22:43:07,743 Fetching project page and analyzing links: https://pypi.org/simple/bayespy/ 2025-09-07T22:43:07,743 Getting page https://pypi.org/simple/bayespy/ 2025-09-07T22:43:07,744 Found index 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https://archive1.piwheels.org/simple/bayespy/bayespy-0.6.1-py3-none-any.whl#sha256=6f680f4f114abbfce5159c94431350f9988abc6b3737bac02933049c59c41f66 (from https://www.piwheels.org/simple/bayespy/) 2025-09-07T22:43:08,029 Skipping link: No binaries permitted for bayespy: https://archive1.piwheels.org/simple/bayespy/bayespy-0.6.0-py3-none-any.whl#sha256=e8bd7c6e90042bee2dcd1800e6ddcdbbd3afbf46b5c73013791f9b9cd4edd072 (from https://www.piwheels.org/simple/bayespy/) 2025-09-07T22:43:08,029 Skipping link: No binaries permitted for bayespy: https://archive1.piwheels.org/simple/bayespy/bayespy-0.5.28-py3-none-any.whl#sha256=7825f5ae1754e233a8e5c0b274f70411226f27fe79bdfbc50b8e99a964a1bf7b (from https://www.piwheels.org/simple/bayespy/) 2025-09-07T22:43:08,029 Skipping link: No binaries permitted for bayespy: https://archive1.piwheels.org/simple/bayespy/bayespy-0.5.26-py3-none-any.whl#sha256=d67681387d9a17821603eadb0795389667139e531fdabbaf7e77ad8d50c2042f (from 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Skipping link: not a file: https://pypi.org/simple/bayespy/ 2025-09-07T22:43:08,063 Given no hashes to check 1 links for project 'bayespy': discarding no candidates 2025-09-07T22:43:08,064 Collecting bayespy==0.1 2025-09-07T22:43:08,065 Created temporary directory: /tmp/pip-unpack-jgong9bu 2025-09-07T22:43:08,206 Downloading bayespy-0.1.tar.gz (160 kB) 2025-09-07T22:43:08,325 Added bayespy==0.1 from https://files.pythonhosted.org/packages/b7/0c/975296deda3a407828f9f2f713b13a3ad16c8547d5efb118d19e904d5f97/bayespy-0.1.tar.gz to build tracker '/tmp/pip-build-tracker-mw75vmq_' 2025-09-07T22:43:08,326 Running setup.py (path:/tmp/pip-wheel-ufyyknxp/bayespy_96ffb61fa76d4b9884bd0b4b8dead1c9/setup.py) egg_info for package bayespy 2025-09-07T22:43:08,326 Created temporary directory: /tmp/pip-pip-egg-info-u375a2u7 2025-09-07T22:43:08,327 Preparing metadata (setup.py): started 2025-09-07T22:43:08,327 Running command python setup.py egg_info 2025-09-07T22:43:09,701 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T22:43:09,702 !! 2025-09-07T22:43:09,702 ******************************************************************************** 2025-09-07T22:43:09,702 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T22:43:09,702 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-07T22:43:09,702 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T22:43:09,702 ******************************************************************************** 2025-09-07T22:43:09,702 !! 2025-09-07T22:43:09,703 self._finalize_license_expression() 2025-09-07T22:43:09,777 running egg_info 2025-09-07T22:43:09,852 creating /tmp/pip-pip-egg-info-u375a2u7/bayespy.egg-info 2025-09-07T22:43:09,853 writing /tmp/pip-pip-egg-info-u375a2u7/bayespy.egg-info/PKG-INFO 2025-09-07T22:43:09,854 writing dependency_links to /tmp/pip-pip-egg-info-u375a2u7/bayespy.egg-info/dependency_links.txt 2025-09-07T22:43:09,855 writing requirements to /tmp/pip-pip-egg-info-u375a2u7/bayespy.egg-info/requires.txt 2025-09-07T22:43:09,855 writing top-level names to /tmp/pip-pip-egg-info-u375a2u7/bayespy.egg-info/top_level.txt 2025-09-07T22:43:09,855 writing manifest file '/tmp/pip-pip-egg-info-u375a2u7/bayespy.egg-info/SOURCES.txt' 2025-09-07T22:43:10,091 reading manifest file '/tmp/pip-pip-egg-info-u375a2u7/bayespy.egg-info/SOURCES.txt' 2025-09-07T22:43:10,092 reading manifest template 'MANIFEST.in' 2025-09-07T22:43:10,100 adding license file 'LICENSE' 2025-09-07T22:43:10,105 writing manifest file '/tmp/pip-pip-egg-info-u375a2u7/bayespy.egg-info/SOURCES.txt' 2025-09-07T22:43:10,244 Preparing metadata (setup.py): finished with status 'done' 2025-09-07T22:43:10,248 Source in /tmp/pip-wheel-ufyyknxp/bayespy_96ffb61fa76d4b9884bd0b4b8dead1c9 has version 0.1, which satisfies requirement bayespy==0.1 from https://files.pythonhosted.org/packages/b7/0c/975296deda3a407828f9f2f713b13a3ad16c8547d5efb118d19e904d5f97/bayespy-0.1.tar.gz 2025-09-07T22:43:10,249 Removed bayespy==0.1 from https://files.pythonhosted.org/packages/b7/0c/975296deda3a407828f9f2f713b13a3ad16c8547d5efb118d19e904d5f97/bayespy-0.1.tar.gz from build tracker '/tmp/pip-build-tracker-mw75vmq_' 2025-09-07T22:43:10,253 Created temporary directory: /tmp/pip-unpack-xd8um9ix 2025-09-07T22:43:10,253 Created temporary directory: /tmp/pip-unpack-t6xlsu4r 2025-09-07T22:43:10,253 Building wheels for collected packages: bayespy 2025-09-07T22:43:10,255 Created temporary directory: /tmp/pip-wheel-vivlcqip 2025-09-07T22:43:10,255 DEPRECATION: Building 'bayespy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'bayespy'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-07T22:43:10,256 Building wheel for bayespy (setup.py): started 2025-09-07T22:43:10,257 Destination directory: /tmp/pip-wheel-vivlcqip 2025-09-07T22:43:10,257 Running command python setup.py bdist_wheel 2025-09-07T22:43:11,559 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T22:43:11,559 !! 2025-09-07T22:43:11,560 ******************************************************************************** 2025-09-07T22:43:11,560 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T22:43:11,560 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-07T22:43:11,560 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T22:43:11,560 ******************************************************************************** 2025-09-07T22:43:11,560 !! 2025-09-07T22:43:11,560 self._finalize_license_expression() 2025-09-07T22:43:11,561 running bdist_wheel 2025-09-07T22:43:11,855 running build 2025-09-07T22:43:11,855 running build_py 2025-09-07T22:43:11,933 creating build/lib.linux-armv7l-cpython-313/bayespy 2025-09-07T22:43:11,933 copying bayespy/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy 2025-09-07T22:43:11,935 creating build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,935 copying bayespy/demos/demo_gaussian_mixture.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,935 copying bayespy/demos/demo_lssm.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,936 copying bayespy/demos/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,936 copying bayespy/demos/demo_saving.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,937 copying bayespy/demos/demo_lssm_drift.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,938 copying bayespy/demos/demo_gpfa.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,938 copying bayespy/demos/demo_categorical.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,939 copying bayespy/demos/demo_gp_sparse.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,939 copying bayespy/demos/demo_kalman_filter.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,940 copying bayespy/demos/demo_gaussian_markov_chain.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,940 copying bayespy/demos/demo_gp.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,941 copying bayespy/demos/demo_rotation.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,941 copying bayespy/demos/demo_pca.py -> build/lib.linux-armv7l-cpython-313/bayespy/demos 2025-09-07T22:43:11,942 creating build/lib.linux-armv7l-cpython-313/bayespy/plot 2025-09-07T22:43:11,942 copying bayespy/plot/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/plot 2025-09-07T22:43:11,943 copying bayespy/plot/plotting.py -> build/lib.linux-armv7l-cpython-313/bayespy/plot 2025-09-07T22:43:11,944 creating build/lib.linux-armv7l-cpython-313/bayespy/utils 2025-09-07T22:43:11,944 copying bayespy/utils/linalg.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils 2025-09-07T22:43:11,944 copying bayespy/utils/optimize.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils 2025-09-07T22:43:11,945 copying bayespy/utils/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils 2025-09-07T22:43:11,945 copying bayespy/utils/random.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils 2025-09-07T22:43:11,946 copying bayespy/utils/utils.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils 2025-09-07T22:43:11,947 creating build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,947 copying bayespy/_nodes_dev/node.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,948 copying bayespy/_nodes_dev/categorical.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,948 copying bayespy/_nodes_dev/gaussian_markov_chain.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,949 copying bayespy/_nodes_dev/variable.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,950 copying bayespy/_nodes_dev/CovarianceFunctions.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,950 copying bayespy/_nodes_dev/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,951 copying bayespy/_nodes_dev/gaussian.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,951 copying bayespy/_nodes_dev/dirichlet.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,952 copying bayespy/_nodes_dev/gamma.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,952 copying bayespy/_nodes_dev/normal.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,953 copying bayespy/_nodes_dev/dot.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,953 copying bayespy/_nodes_dev/constant.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,954 copying bayespy/_nodes_dev/mixture.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,954 copying bayespy/_nodes_dev/wishart.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,955 copying bayespy/_nodes_dev/GaussianProcesses.py -> build/lib.linux-armv7l-cpython-313/bayespy/_nodes_dev 2025-09-07T22:43:11,956 creating build/lib.linux-armv7l-cpython-313/bayespy/inference 2025-09-07T22:43:11,956 copying bayespy/inference/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference 2025-09-07T22:43:11,957 creating build/lib.linux-armv7l-cpython-313/bayespy/utils/tests 2025-09-07T22:43:11,957 copying bayespy/utils/tests/test_utils.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils/tests 2025-09-07T22:43:11,958 copying bayespy/utils/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils/tests 2025-09-07T22:43:11,958 copying bayespy/utils/tests/test_linalg.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils/tests 2025-09-07T22:43:11,959 creating build/lib.linux-armv7l-cpython-313/bayespy/utils/covfunc 2025-09-07T22:43:11,959 copying bayespy/utils/covfunc/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils/covfunc 2025-09-07T22:43:11,960 copying bayespy/utils/covfunc/covariance.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils/covfunc 2025-09-07T22:43:11,960 creating build/lib.linux-armv7l-cpython-313/bayespy/utils/covfunc/tests 2025-09-07T22:43:11,961 copying bayespy/utils/covfunc/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils/covfunc/tests 2025-09-07T22:43:11,961 copying bayespy/utils/covfunc/tests/test_distance.py -> build/lib.linux-armv7l-cpython-313/bayespy/utils/covfunc/tests 2025-09-07T22:43:11,962 creating build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp 2025-09-07T22:43:11,962 copying bayespy/inference/vmp/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp 2025-09-07T22:43:11,963 copying bayespy/inference/vmp/transformations.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp 2025-09-07T22:43:11,964 copying bayespy/inference/vmp/vmp.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp 2025-09-07T22:43:11,965 creating build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,965 copying bayespy/inference/vmp/nodes/node.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,966 copying bayespy/inference/vmp/nodes/categorical.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,966 copying bayespy/inference/vmp/nodes/deterministic.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,967 copying bayespy/inference/vmp/nodes/node2.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,967 copying bayespy/inference/vmp/nodes/gaussian_markov_chain.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,968 copying bayespy/inference/vmp/nodes/variable.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,968 copying bayespy/inference/vmp/nodes/CovarianceFunctions.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,969 copying bayespy/inference/vmp/nodes/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,970 copying bayespy/inference/vmp/nodes/expfamily.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,970 copying bayespy/inference/vmp/nodes/gaussian.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,971 copying bayespy/inference/vmp/nodes/dirichlet.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,971 copying bayespy/inference/vmp/nodes/gamma.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,972 copying bayespy/inference/vmp/nodes/stochastic.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,973 copying bayespy/inference/vmp/nodes/normal.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,973 copying bayespy/inference/vmp/nodes/dot.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,974 copying bayespy/inference/vmp/nodes/constant.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,974 copying bayespy/inference/vmp/nodes/mixture.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,975 copying bayespy/inference/vmp/nodes/wishart.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,975 copying bayespy/inference/vmp/nodes/GaussianProcesses.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes 2025-09-07T22:43:11,976 creating build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/tests 2025-09-07T22:43:11,976 copying bayespy/inference/vmp/tests/gp.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/tests 2025-09-07T22:43:11,977 copying bayespy/inference/vmp/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/tests 2025-09-07T22:43:11,978 copying bayespy/inference/vmp/tests/vmp.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/tests 2025-09-07T22:43:11,978 creating build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes/tests 2025-09-07T22:43:11,979 copying bayespy/inference/vmp/nodes/tests/test_node.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes/tests 2025-09-07T22:43:11,979 copying bayespy/inference/vmp/nodes/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes/tests 2025-09-07T22:43:11,980 copying bayespy/inference/vmp/nodes/tests/test_deterministic.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes/tests 2025-09-07T22:43:11,980 copying bayespy/inference/vmp/nodes/tests/test_dot.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes/tests 2025-09-07T22:43:11,981 copying bayespy/inference/vmp/nodes/tests/test_gaussian_markov_chain.py -> build/lib.linux-armv7l-cpython-313/bayespy/inference/vmp/nodes/tests 2025-09-07T22:43:11,988 running build_ext 2025-09-07T22:43:12,471 Compiling bayespy/utils/covfunc/distance.pyx because it changed. 2025-09-07T22:43:12,471 [1/1] Cythonizing bayespy/utils/covfunc/distance.pyx 2025-09-07T22:43:13,377 Error compiling Cython file: 2025-09-07T22:43:13,377 ------------------------------------------------------------ 2025-09-07T22:43:13,378 ... 2025-09-07T22:43:13,378 # Copyright (C) 2012 Jaakko Luttinen 2025-09-07T22:43:13,378 # Released under the terms of the GNU GPL v3, or, at your option, any 2025-09-07T22:43:13,378 # later version. 2025-09-07T22:43:13,378 import warnings 2025-09-07T22:43:13,378 cimport stdlib 2025-09-07T22:43:13,378 ^ 2025-09-07T22:43:13,378 ------------------------------------------------------------ 2025-09-07T22:43:13,378 bayespy/utils/covfunc/distance.pyx:7:8: 'stdlib.pxd' not found 2025-09-07T22:43:13,399 Error compiling Cython file: 2025-09-07T22:43:13,399 ------------------------------------------------------------ 2025-09-07T22:43:13,399 ... 2025-09-07T22:43:13,399 # Released under the terms of the GNU GPL v3, or, at your option, any 2025-09-07T22:43:13,399 # later version. 2025-09-07T22:43:13,399 import warnings 2025-09-07T22:43:13,399 cimport stdlib 2025-09-07T22:43:13,399 cimport python as py 2025-09-07T22:43:13,400 ^ 2025-09-07T22:43:13,400 ------------------------------------------------------------ 2025-09-07T22:43:13,400 bayespy/utils/covfunc/distance.pyx:8:8: 'python.pxd' not found 2025-09-07T22:43:14,013 Error compiling Cython file: 2025-09-07T22:43:14,013 ------------------------------------------------------------ 2025-09-07T22:43:14,013 ... 2025-09-07T22:43:14,013 enum: 2025-09-07T22:43:14,013 NPY_F_CONTIGUOUS 2025-09-07T22:43:14,013 cdef inline np.ndarray set_base(np.ndarray arr, object base): 2025-09-07T22:43:14,013 cdef ndarray_with_base * hack = arr 2025-09-07T22:43:14,013 py.Py_INCREF(base) 2025-09-07T22:43:14,013 ^ 2025-09-07T22:43:14,014 ------------------------------------------------------------ 2025-09-07T22:43:14,014 bayespy/utils/covfunc/distance.pyx:49:6: cimported module has no attribute 'Py_INCREF' 2025-09-07T22:43:14,014 Error compiling Cython file: 2025-09-07T22:43:14,014 ------------------------------------------------------------ 2025-09-07T22:43:14,014 ... 2025-09-07T22:43:14,014 cdef class _CleanupCOO(object): 2025-09-07T22:43:14,014 cdef int * _ij 2025-09-07T22:43:14,015 cdef double * _x 2025-09-07T22:43:14,015 def __dealloc__(self): 2025-09-07T22:43:14,015 stdlib.free(self._ij) 2025-09-07T22:43:14,015 ^ 2025-09-07T22:43:14,015 ------------------------------------------------------------ 2025-09-07T22:43:14,015 bayespy/utils/covfunc/distance.pyx:89:14: cimported module has no attribute 'free' 2025-09-07T22:43:14,015 Error compiling Cython file: 2025-09-07T22:43:14,015 ------------------------------------------------------------ 2025-09-07T22:43:14,015 ... 2025-09-07T22:43:14,015 cdef class _CleanupCOO(object): 2025-09-07T22:43:14,016 cdef int * _ij 2025-09-07T22:43:14,016 cdef double * _x 2025-09-07T22:43:14,016 def __dealloc__(self): 2025-09-07T22:43:14,016 stdlib.free(self._ij) 2025-09-07T22:43:14,016 stdlib.free(self._x) 2025-09-07T22:43:14,016 ^ 2025-09-07T22:43:14,016 ------------------------------------------------------------ 2025-09-07T22:43:14,016 bayespy/utils/covfunc/distance.pyx:90:14: cimported module has no attribute 'free' 2025-09-07T22:43:14,017 Error compiling Cython file: 2025-09-07T22:43:14,017 ------------------------------------------------------------ 2025-09-07T22:43:14,017 ... 2025-09-07T22:43:14,017 cdef class _CleanupCSC(object): 2025-09-07T22:43:14,017 cdef int * _p 2025-09-07T22:43:14,017 cdef int * _i 2025-09-07T22:43:14,017 cdef double * _x 2025-09-07T22:43:14,017 def __dealloc__(self): 2025-09-07T22:43:14,017 stdlib.free(self._p) 2025-09-07T22:43:14,017 ^ 2025-09-07T22:43:14,017 ------------------------------------------------------------ 2025-09-07T22:43:14,018 bayespy/utils/covfunc/distance.pyx:97:14: cimported module has no attribute 'free' 2025-09-07T22:43:14,018 Error compiling Cython file: 2025-09-07T22:43:14,018 ------------------------------------------------------------ 2025-09-07T22:43:14,018 ... 2025-09-07T22:43:14,018 cdef int * _p 2025-09-07T22:43:14,018 cdef int * _i 2025-09-07T22:43:14,018 cdef double * _x 2025-09-07T22:43:14,018 def __dealloc__(self): 2025-09-07T22:43:14,018 stdlib.free(self._p) 2025-09-07T22:43:14,018 stdlib.free(self._i) 2025-09-07T22:43:14,019 ^ 2025-09-07T22:43:14,019 ------------------------------------------------------------ 2025-09-07T22:43:14,019 bayespy/utils/covfunc/distance.pyx:98:14: cimported module has no attribute 'free' 2025-09-07T22:43:14,019 Error compiling Cython file: 2025-09-07T22:43:14,019 ------------------------------------------------------------ 2025-09-07T22:43:14,019 ... 2025-09-07T22:43:14,019 cdef int * _i 2025-09-07T22:43:14,019 cdef double * _x 2025-09-07T22:43:14,019 def __dealloc__(self): 2025-09-07T22:43:14,020 stdlib.free(self._p) 2025-09-07T22:43:14,020 stdlib.free(self._i) 2025-09-07T22:43:14,020 stdlib.free(self._x) 2025-09-07T22:43:14,020 ^ 2025-09-07T22:43:14,020 ------------------------------------------------------------ 2025-09-07T22:43:14,020 bayespy/utils/covfunc/distance.pyx:99:14: cimported module has no attribute 'free' 2025-09-07T22:43:14,022 Error compiling Cython file: 2025-09-07T22:43:14,023 ------------------------------------------------------------ 2025-09-07T22:43:14,023 ... 2025-09-07T22:43:14,023 cdef np.npy_intp nz = nzmax 2025-09-07T22:43:14,023 cdef np.npy_intp nz2[2] 2025-09-07T22:43:14,023 nz2[0] = 2 2025-09-07T22:43:14,023 nz2[1] = nzmax 2025-09-07T22:43:14,023 py.Py_INCREF(_integer_py_dtype) 2025-09-07T22:43:14,023 ^ 2025-09-07T22:43:14,023 ------------------------------------------------------------ 2025-09-07T22:43:14,023 bayespy/utils/covfunc/distance.pyx:115:6: cimported module has no attribute 'Py_INCREF' 2025-09-07T22:43:14,024 Error compiling Cython file: 2025-09-07T22:43:14,024 ------------------------------------------------------------ 2025-09-07T22:43:14,024 ... 2025-09-07T22:43:14,024 nz2, 2025-09-07T22:43:14,024 NULL, 2025-09-07T22:43:14,024 ij, 2025-09-07T22:43:14,024 NPY_F_CONTIGUOUS, None), 2025-09-07T22:43:14,024 cleaner) 2025-09-07T22:43:14,024 py.Py_INCREF(_real_py_dtype) 2025-09-07T22:43:14,024 ^ 2025-09-07T22:43:14,025 ------------------------------------------------------------ 2025-09-07T22:43:14,025 bayespy/utils/covfunc/distance.pyx:123:6: cimported module has no attribute 'Py_INCREF' 2025-09-07T22:43:14,027 Error compiling Cython file: 2025-09-07T22:43:14,028 ------------------------------------------------------------ 2025-09-07T22:43:14,028 ... 2025-09-07T22:43:14,028 cleaner._x = x 2025-09-07T22:43:14,028 # PyObject *PyArray_SimpleNewFromData(int nd, npy_intp* dims, int typenum, void* data) 2025-09-07T22:43:14,028 shape = (m, n) 2025-09-07T22:43:14,028 py.Py_INCREF(_integer_py_dtype) 2025-09-07T22:43:14,028 ^ 2025-09-07T22:43:14,028 ------------------------------------------------------------ 2025-09-07T22:43:14,029 bayespy/utils/covfunc/distance.pyx:143:6: cimported module has no attribute 'Py_INCREF' 2025-09-07T22:43:14,029 Error compiling Cython file: 2025-09-07T22:43:14,029 ------------------------------------------------------------ 2025-09-07T22:43:14,029 ... 2025-09-07T22:43:14,029 &ncol_plus_1, 2025-09-07T22:43:14,029 NULL, 2025-09-07T22:43:14,029 p, 2025-09-07T22:43:14,029 NPY_F_CONTIGUOUS, None), 2025-09-07T22:43:14,029 cleaner) 2025-09-07T22:43:14,029 py.Py_INCREF(_integer_py_dtype) 2025-09-07T22:43:14,030 ^ 2025-09-07T22:43:14,030 ------------------------------------------------------------ 2025-09-07T22:43:14,030 bayespy/utils/covfunc/distance.pyx:152:6: cimported module has no attribute 'Py_INCREF' 2025-09-07T22:43:14,030 Error compiling Cython file: 2025-09-07T22:43:14,030 ------------------------------------------------------------ 2025-09-07T22:43:14,030 ... 2025-09-07T22:43:14,030 &nz, 2025-09-07T22:43:14,030 NULL, 2025-09-07T22:43:14,030 i, 2025-09-07T22:43:14,031 NPY_F_CONTIGUOUS, None), 2025-09-07T22:43:14,031 cleaner) 2025-09-07T22:43:14,031 py.Py_INCREF(_real_py_dtype) 2025-09-07T22:43:14,031 ^ 2025-09-07T22:43:14,031 ------------------------------------------------------------ 2025-09-07T22:43:14,031 bayespy/utils/covfunc/distance.pyx:161:6: cimported module has no attribute 'Py_INCREF' 2025-09-07T22:43:14,100 Traceback (most recent call last): 2025-09-07T22:43:14,108 File "", line 2, in 2025-09-07T22:43:14,109 exec(compile(''' 2025-09-07T22:43:14,109 ~~~~^^^^^^^^^^^^ 2025-09-07T22:43:14,109 # This is -- a caller that pip uses to run setup.py 2025-09-07T22:43:14,109 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T22:43:14,109 ...<32 lines>... 2025-09-07T22:43:14,109 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T22:43:14,109 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T22:43:14,109 ''' % ('/tmp/pip-wheel-ufyyknxp/bayespy_96ffb61fa76d4b9884bd0b4b8dead1c9/setup.py',), "", "exec")) 2025-09-07T22:43:14,109 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T22:43:14,110 File "", line 35, in 2025-09-07T22:43:14,110 File "/tmp/pip-wheel-ufyyknxp/bayespy_96ffb61fa76d4b9884bd0b4b8dead1c9/setup.py", line 63, in 2025-09-07T22:43:14,110 setup( 2025-09-07T22:43:14,110 ~~~~~^ 2025-09-07T22:43:14,110 install_requires = ['numpy>=1.7.1', # 1.7.0 contains a memory leak bug fixed in 1.7.1 2025-09-07T22:43:14,110 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T22:43:14,110 ...<53 lines>... 2025-09-07T22:43:14,110 ] 2025-09-07T22:43:14,111 ^ 2025-09-07T22:43:14,111 ) 2025-09-07T22:43:14,111 ^ 2025-09-07T22:43:14,111 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-07T22:43:14,111 return distutils.core.setup(**attrs) 2025-09-07T22:43:14,111 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-07T22:43:14,111 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-07T22:43:14,111 return run_commands(dist) 2025-09-07T22:43:14,112 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-07T22:43:14,112 dist.run_commands() 2025-09-07T22:43:14,112 ~~~~~~~~~~~~~~~~~^^ 2025-09-07T22:43:14,112 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-07T22:43:14,112 self.run_command(cmd) 2025-09-07T22:43:14,112 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-07T22:43:14,112 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-07T22:43:14,112 super().run_command(command) 2025-09-07T22:43:14,113 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-07T22:43:14,113 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-07T22:43:14,113 cmd_obj.run() 2025-09-07T22:43:14,113 ~~~~~~~~~~~^^ 2025-09-07T22:43:14,113 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-07T22:43:14,113 self.run_command("build") 2025-09-07T22:43:14,113 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-07T22:43:14,113 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-07T22:43:14,114 self.distribution.run_command(command) 2025-09-07T22:43:14,114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-07T22:43:14,114 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-07T22:43:14,114 super().run_command(command) 2025-09-07T22:43:14,114 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-07T22:43:14,114 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-07T22:43:14,114 cmd_obj.run() 2025-09-07T22:43:14,114 ~~~~~~~~~~~^^ 2025-09-07T22:43:14,114 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-07T22:43:14,115 self.run_command(cmd_name) 2025-09-07T22:43:14,115 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-07T22:43:14,115 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-07T22:43:14,115 self.distribution.run_command(command) 2025-09-07T22:43:14,115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-07T22:43:14,115 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-07T22:43:14,115 super().run_command(command) 2025-09-07T22:43:14,115 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-07T22:43:14,116 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-07T22:43:14,116 cmd_obj.run() 2025-09-07T22:43:14,116 ~~~~~~~~~~~^^ 2025-09-07T22:43:14,116 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-07T22:43:14,116 self.build_extensions() 2025-09-07T22:43:14,116 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-07T22:43:14,116 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-07T22:43:14,117 self._build_extensions_serial() 2025-09-07T22:43:14,117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-07T22:43:14,117 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-07T22:43:14,117 self.build_extension(ext) 2025-09-07T22:43:14,117 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-07T22:43:14,117 File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension 2025-09-07T22:43:14,117 new_ext = cythonize( 2025-09-07T22:43:14,117 ~~~~~~~~~^ 2025-09-07T22:43:14,117 ext,force=self.force, quiet=self.verbose == 0, **options 2025-09-07T22:43:14,118 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-07T22:43:14,118 )[0] 2025-09-07T22:43:14,118 ^ 2025-09-07T22:43:14,118 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-07T22:43:14,118 cythonize_one(*args) 2025-09-07T22:43:14,118 ~~~~~~~~~~~~~^^^^^^^ 2025-09-07T22:43:14,118 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-07T22:43:14,119 raise CompileError(None, pyx_file) 2025-09-07T22:43:14,119 Cython.Compiler.Errors.CompileError: bayespy/utils/covfunc/distance.pyx 2025-09-07T22:43:14,461 ERROR: python setup.py bdist_wheel exited with 1 2025-09-07T22:43:14,474 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-07T22:43:14,474 exec(compile('"'"''"'"''"'"' 2025-09-07T22:43:14,474 # This is -- a caller that pip uses to run setup.py 2025-09-07T22:43:14,474 # 2025-09-07T22:43:14,474 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-07T22:43:14,474 # import from `distutils.core` to work with newer packaging standards. 2025-09-07T22:43:14,474 # - It provides a clear error message when setuptools is not installed. 2025-09-07T22:43:14,474 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-07T22:43:14,474 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-07T22:43:14,474 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-07T22:43:14,474 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-07T22:43:14,474 import os, sys, tokenize, traceback 2025-09-07T22:43:14,474 2025-09-07T22:43:14,474 try: 2025-09-07T22:43:14,474 import setuptools 2025-09-07T22:43:14,474 except ImportError: 2025-09-07T22:43:14,474 print( 2025-09-07T22:43:14,474 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-07T22:43:14,474 "the build environment with exception:", 2025-09-07T22:43:14,474 file=sys.stderr, 2025-09-07T22:43:14,474 ) 2025-09-07T22:43:14,474 traceback.print_exc() 2025-09-07T22:43:14,474 sys.exit(1) 2025-09-07T22:43:14,474 2025-09-07T22:43:14,474 __file__ = %r 2025-09-07T22:43:14,474 sys.argv[0] = __file__ 2025-09-07T22:43:14,474 2025-09-07T22:43:14,474 if os.path.exists(__file__): 2025-09-07T22:43:14,474 filename = __file__ 2025-09-07T22:43:14,474 with tokenize.open(__file__) as f: 2025-09-07T22:43:14,474 setup_py_code = f.read() 2025-09-07T22:43:14,474 else: 2025-09-07T22:43:14,474 filename = "" 2025-09-07T22:43:14,474 setup_py_code = "from setuptools import setup; setup()" 2025-09-07T22:43:14,474 2025-09-07T22:43:14,474 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T22:43:14,474 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ufyyknxp/bayespy_96ffb61fa76d4b9884bd0b4b8dead1c9/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-vivlcqip[/] 2025-09-07T22:43:14,475 [bold magenta]cwd[/]: /tmp/pip-wheel-ufyyknxp/bayespy_96ffb61fa76d4b9884bd0b4b8dead1c9/ 2025-09-07T22:43:14,475 Building wheel for bayespy (setup.py): finished with status 'error' 2025-09-07T22:43:14,476 ERROR: Failed building wheel for bayespy 2025-09-07T22:43:14,477 Running setup.py clean for bayespy 2025-09-07T22:43:14,478 Running command python setup.py clean 2025-09-07T22:43:15,774 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-07T22:43:15,775 !! 2025-09-07T22:43:15,775 ******************************************************************************** 2025-09-07T22:43:15,775 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-07T22:43:15,775 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-07T22:43:15,775 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-07T22:43:15,775 ******************************************************************************** 2025-09-07T22:43:15,776 !! 2025-09-07T22:43:15,776 self._finalize_license_expression() 2025-09-07T22:43:15,850 running clean 2025-09-07T22:43:15,994 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-07T22:43:15,997 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-07T22:43:15,997 'build/scripts-3.13' does not exist -- can't clean it 2025-09-07T22:43:15,997 removing 'build' 2025-09-07T22:43:16,134 Failed to build bayespy 2025-09-07T22:43:16,135 ERROR: Failed to build one or more wheels 2025-09-07T22:43:16,136 Exception information: 2025-09-07T22:43:16,136 Traceback (most recent call last): 2025-09-07T22:43:16,136 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-07T22:43:16,136 status = _inner_run() 2025-09-07T22:43:16,136 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-07T22:43:16,136 return self.run(options, args) 2025-09-07T22:43:16,136 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-07T22:43:16,136 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-07T22:43:16,136 return func(self, options, args) 2025-09-07T22:43:16,136 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-07T22:43:16,136 raise CommandError("Failed to build one or more wheels") 2025-09-07T22:43:16,136 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-07T22:43:16,140 Removed build tracker: '/tmp/pip-build-tracker-mw75vmq_'