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https://archive1.piwheels.org/simple/pythomics/pythomics-0.3.3-py3-none-any.whl#sha256=ce13c92c0b3cd6675fa9eb88b2490af802ee2791ad54508b45cbb17722f809a9 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,793 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.3.2-py3-none-any.whl#sha256=41ee270ab34e14d5dc964717d5bd043bc767cff6852b50b20819737c50d1b4c8 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,793 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.3.1-py3-none-any.whl#sha256=9d63a4ce049de48fdc194bf9c98ab69c73fdeb296405bd4dc7f270e0ae1ba710 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,793 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.3.0-py3-none-any.whl#sha256=231473a76c5c77a5d9e51e7228f690f8772bb114e4996b57f95ada779d28214a (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,793 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.2.1-py3-none-any.whl#sha256=bb22812dd53240ba45c9c3f242c117c462804d9dd1b9f049a02b2550b7132b7a (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,793 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.2.0-py3-none-any.whl#sha256=34a78b55a98cfe43a918df66d975a0ce27ec581809c3c87adf76a27bd36fc276 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,793 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.99-py3-none-any.whl#sha256=a8a2641165fb69645063397a3fa40f215b255cf2a99805323bc83ed3ea228188 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,794 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.98-py3-none-any.whl#sha256=137fa29e4596f999b023185d7411180a901d2acf22a662ae09ad3fef998a0e18 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,794 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.97-py3-none-any.whl#sha256=a947da5d16d25070a42fcbf0bce3de64646e026704d4908ede7c275d81a87d1c (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,794 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.96-py3-none-any.whl#sha256=b69cbceee084f0237a4f0ff7ea08da94fcfbb96fa9cc380c0b5df81d73d427c0 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,794 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.95-py3-none-any.whl#sha256=7053bdfb0e870ed59dfbabe329cd3fe991cbdd88c9b71c9330cdb8ef0bfc006e (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,794 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.94-py3-none-any.whl#sha256=333cfe57b8f556d2825580fda392a8a73d5e50c3fc9bbb3e15d308357d95daea (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,794 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.93-py3-none-any.whl#sha256=8fb87f1ca5d6c914db33b7f117d57ff4e565a240f924dc23eab3d50efd0cd29f (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,795 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.92-py3-none-any.whl#sha256=c2adf143967a6dcf19ee615c2c7ee7e04a1526fa5e8490f8fb51bc632d2ea551 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,795 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.91-py3-none-any.whl#sha256=23274402438586f1825844c4854256a05f67fda88c908dda97b91b64c8159306 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,795 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.84-py3-none-any.whl#sha256=471b0d1001566b99088056ede7edfda105667cc46a179053a2c1455f64392fbc (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,795 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.82-py3-none-any.whl#sha256=f0534cae73b7717527d991703fadbc6faf239ee8cf66e35f48641e0528241229 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,795 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.81-py3-none-any.whl#sha256=f51dbbc1c7049d51da053ed0c86508ae096b7161990a795b3e7ad8f83b77078a (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,795 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.9-py3-none-any.whl#sha256=62f7ab7d9fccc6d823f1434adcd2a9529e072a0f99fafbd9d3626a8675522503 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,796 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.8-py3-none-any.whl#sha256=7d68c4a2a3637a7a9f989f88b892caeff9703ac06015afca7ee2d4aaebe5b116 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,796 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.7-py3-none-any.whl#sha256=3841bb7c42541bf4923ac07b3531390f266b4eaaf9e3a479c79ddfecbe8da6c2 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,796 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.6-py3-none-any.whl#sha256=a1da1bfc36f581beccc78b47b756119bcadba564616cd97143fba364ef3077bd (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,796 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.5-py3-none-any.whl#sha256=98696e73c35daa174bf1cd2fc3f5d2b16bf8d10781dd9adc63c8db0ef0c51d49 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,796 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.4-py3-none-any.whl#sha256=315f1a22b1d3335ba72acc473e62afe73a524441872876951b3c5db222120f58 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,796 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.3-py3-none-any.whl#sha256=c9c6724829f969dba1f4059054badfadaac2ddabb4ece8d780a61a8c5c11490f (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,796 Skipping link: No binaries permitted for pythomics: https://archive1.piwheels.org/simple/pythomics/pythomics-0.1.1-py3-none-any.whl#sha256=8453aaaedbaa7c5755253daf5a724f756f96240c2c63f2f7882c8490cfc64ae8 (from https://www.piwheels.org/simple/pythomics/) 2025-09-07T23:11:57,797 Skipping link: not a file: https://www.piwheels.org/simple/pythomics/ 2025-09-07T23:11:57,797 Skipping link: not a file: https://pypi.org/simple/pythomics/ 2025-09-07T23:11:57,827 Given no hashes to check 1 links for project 'pythomics': discarding no candidates 2025-09-07T23:11:57,828 Collecting pythomics==0.1.2 2025-09-07T23:11:57,830 Created temporary directory: /tmp/pip-unpack-tsi7oiab 2025-09-07T23:11:58,327 Downloading pythomics-0.1.2.tar.gz (5.7 kB) 2025-09-07T23:11:58,355 Added pythomics==0.1.2 from https://files.pythonhosted.org/packages/bf/45/cafdadb67cc77378c2c582b704bc969b2b2f21946f73782333f960ce3fd2/pythomics-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-i3s6ht_y' 2025-09-07T23:11:58,356 Running setup.py (path:/tmp/pip-wheel-_1mejsww/pythomics_cfa4c269b11b48a9afd0efc11018acab/setup.py) egg_info for package pythomics 2025-09-07T23:11:58,356 Created temporary directory: /tmp/pip-pip-egg-info-lhqa2ppw 2025-09-07T23:11:58,357 Preparing metadata (setup.py): started 2025-09-07T23:11:58,358 Running command python setup.py egg_info 2025-09-07T23:11:59,581 running egg_info 2025-09-07T23:11:59,656 creating /tmp/pip-pip-egg-info-lhqa2ppw/pythomics.egg-info 2025-09-07T23:11:59,656 writing /tmp/pip-pip-egg-info-lhqa2ppw/pythomics.egg-info/PKG-INFO 2025-09-07T23:11:59,657 writing dependency_links to /tmp/pip-pip-egg-info-lhqa2ppw/pythomics.egg-info/dependency_links.txt 2025-09-07T23:11:59,658 writing top-level names to /tmp/pip-pip-egg-info-lhqa2ppw/pythomics.egg-info/top_level.txt 2025-09-07T23:11:59,658 writing manifest file '/tmp/pip-pip-egg-info-lhqa2ppw/pythomics.egg-info/SOURCES.txt' 2025-09-07T23:11:59,951 reading manifest file '/tmp/pip-pip-egg-info-lhqa2ppw/pythomics.egg-info/SOURCES.txt' 2025-09-07T23:11:59,954 writing manifest file '/tmp/pip-pip-egg-info-lhqa2ppw/pythomics.egg-info/SOURCES.txt' 2025-09-07T23:12:00,066 Preparing metadata (setup.py): finished with status 'done' 2025-09-07T23:12:00,071 Source in /tmp/pip-wheel-_1mejsww/pythomics_cfa4c269b11b48a9afd0efc11018acab has version 0.1.2, which satisfies requirement pythomics==0.1.2 from https://files.pythonhosted.org/packages/bf/45/cafdadb67cc77378c2c582b704bc969b2b2f21946f73782333f960ce3fd2/pythomics-0.1.2.tar.gz 2025-09-07T23:12:00,071 Removed pythomics==0.1.2 from https://files.pythonhosted.org/packages/bf/45/cafdadb67cc77378c2c582b704bc969b2b2f21946f73782333f960ce3fd2/pythomics-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-i3s6ht_y' 2025-09-07T23:12:00,074 Created temporary directory: /tmp/pip-unpack-abf83yn1 2025-09-07T23:12:00,074 Created temporary directory: /tmp/pip-unpack-g14vzbgo 2025-09-07T23:12:00,074 Building wheels for collected packages: pythomics 2025-09-07T23:12:00,075 Created temporary directory: /tmp/pip-wheel-gyda0d3y 2025-09-07T23:12:00,076 DEPRECATION: Building 'pythomics' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pythomics'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-07T23:12:00,077 Building wheel for pythomics (setup.py): started 2025-09-07T23:12:00,077 Destination directory: /tmp/pip-wheel-gyda0d3y 2025-09-07T23:12:00,077 Running command python setup.py bdist_wheel 2025-09-07T23:12:01,117 running bdist_wheel 2025-09-07T23:12:01,473 running build 2025-09-07T23:12:01,473 running build_py 2025-09-07T23:12:01,547 creating build/lib/pythomics 2025-09-07T23:12:01,548 copying pythomics/__init__.py -> build/lib/pythomics 2025-09-07T23:12:01,549 creating build/lib/pythomics/parsers 2025-09-07T23:12:01,549 copying pythomics/parsers/config.py -> build/lib/pythomics/parsers 2025-09-07T23:12:01,549 copying pythomics/parsers/fasta.py -> build/lib/pythomics/parsers 2025-09-07T23:12:01,550 copying pythomics/parsers/__init__.py -> build/lib/pythomics/parsers 2025-09-07T23:12:01,550 copying pythomics/parsers/fastq.py -> build/lib/pythomics/parsers 2025-09-07T23:12:01,551 creating build/lib/pythomics/proteomics 2025-09-07T23:12:01,551 copying pythomics/proteomics/digest.py -> build/lib/pythomics/proteomics 2025-09-07T23:12:01,552 copying pythomics/proteomics/config.py -> build/lib/pythomics/proteomics 2025-09-07T23:12:01,553 copying pythomics/proteomics/__init__.py -> build/lib/pythomics/proteomics 2025-09-07T23:12:01,553 creating build/lib/pythomics/templates 2025-09-07T23:12:01,553 copying pythomics/templates/__init__.py -> build/lib/pythomics/templates 2025-09-07T23:12:01,554 creating build/lib/pythomics/tests 2025-09-07T23:12:01,554 copying pythomics/tests/fasta_iterator.py -> build/lib/pythomics/tests 2025-09-07T23:12:01,555 copying pythomics/tests/protein_digestion.py -> build/lib/pythomics/tests 2025-09-07T23:12:01,555 copying pythomics/tests/__init__.py -> build/lib/pythomics/tests 2025-09-07T23:12:01,558 running build_scripts 2025-09-07T23:12:01,559 creating build/scripts-3.13 2025-09-07T23:12:01,559 error: [Errno 2] No such file or directory: 'pythomics/scripts' 2025-09-07T23:12:01,672 ERROR: python setup.py bdist_wheel exited with 1 2025-09-07T23:12:01,684 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-07T23:12:01,684 exec(compile('"'"''"'"''"'"' 2025-09-07T23:12:01,684 # This is -- a caller that pip uses to run setup.py 2025-09-07T23:12:01,684 # 2025-09-07T23:12:01,684 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-07T23:12:01,684 # import from `distutils.core` to work with newer packaging standards. 2025-09-07T23:12:01,684 # - It provides a clear error message when setuptools is not installed. 2025-09-07T23:12:01,684 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-07T23:12:01,684 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-07T23:12:01,684 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-07T23:12:01,684 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-07T23:12:01,684 import os, sys, tokenize, traceback 2025-09-07T23:12:01,684 2025-09-07T23:12:01,684 try: 2025-09-07T23:12:01,684 import setuptools 2025-09-07T23:12:01,684 except ImportError: 2025-09-07T23:12:01,684 print( 2025-09-07T23:12:01,684 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-07T23:12:01,684 "the build environment with exception:", 2025-09-07T23:12:01,684 file=sys.stderr, 2025-09-07T23:12:01,684 ) 2025-09-07T23:12:01,684 traceback.print_exc() 2025-09-07T23:12:01,684 sys.exit(1) 2025-09-07T23:12:01,684 2025-09-07T23:12:01,684 __file__ = %r 2025-09-07T23:12:01,684 sys.argv[0] = __file__ 2025-09-07T23:12:01,684 2025-09-07T23:12:01,684 if os.path.exists(__file__): 2025-09-07T23:12:01,684 filename = __file__ 2025-09-07T23:12:01,684 with tokenize.open(__file__) as f: 2025-09-07T23:12:01,684 setup_py_code = f.read() 2025-09-07T23:12:01,684 else: 2025-09-07T23:12:01,684 filename = "" 2025-09-07T23:12:01,684 setup_py_code = "from setuptools import setup; setup()" 2025-09-07T23:12:01,684 2025-09-07T23:12:01,684 exec(compile(setup_py_code, filename, "exec")) 2025-09-07T23:12:01,684 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-_1mejsww/pythomics_cfa4c269b11b48a9afd0efc11018acab/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-gyda0d3y[/] 2025-09-07T23:12:01,684 [bold magenta]cwd[/]: /tmp/pip-wheel-_1mejsww/pythomics_cfa4c269b11b48a9afd0efc11018acab/ 2025-09-07T23:12:01,684 Building wheel for pythomics (setup.py): finished with status 'error' 2025-09-07T23:12:01,685 ERROR: Failed building wheel for pythomics 2025-09-07T23:12:01,686 Running setup.py clean for pythomics 2025-09-07T23:12:01,686 Running command python setup.py clean 2025-09-07T23:12:02,821 running clean 2025-09-07T23:12:02,963 removing 'build/lib' (and everything under it) 2025-09-07T23:12:02,964 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-07T23:12:02,964 removing 'build/scripts-3.13' (and everything under it) 2025-09-07T23:12:02,965 removing 'build' 2025-09-07T23:12:03,076 Failed to build pythomics 2025-09-07T23:12:03,076 ERROR: Failed to build one or more wheels 2025-09-07T23:12:03,077 Exception information: 2025-09-07T23:12:03,077 Traceback (most recent call last): 2025-09-07T23:12:03,077 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-07T23:12:03,077 status = _inner_run() 2025-09-07T23:12:03,077 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-07T23:12:03,077 return self.run(options, args) 2025-09-07T23:12:03,077 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-07T23:12:03,077 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-07T23:12:03,077 return func(self, options, args) 2025-09-07T23:12:03,077 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-07T23:12:03,077 raise CommandError("Failed to build one or more wheels") 2025-09-07T23:12:03,077 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-07T23:12:03,082 Removed build tracker: '/tmp/pip-build-tracker-i3s6ht_y'