2025-09-08T00:16:54,882 Created temporary directory: /tmp/pip-build-tracker-p424e9y_ 2025-09-08T00:16:54,883 Initialized build tracking at /tmp/pip-build-tracker-p424e9y_ 2025-09-08T00:16:54,883 Created build tracker: /tmp/pip-build-tracker-p424e9y_ 2025-09-08T00:16:54,883 Entered build tracker: /tmp/pip-build-tracker-p424e9y_ 2025-09-08T00:16:54,883 Created temporary directory: /tmp/pip-wheel-yaprnw10 2025-09-08T00:16:54,886 Created temporary directory: /tmp/pip-ephem-wheel-cache-yironvcr 2025-09-08T00:16:54,943 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T00:16:54,945 2 location(s) to search for versions of scikit-bio: 2025-09-08T00:16:54,945 * https://pypi.org/simple/scikit-bio/ 2025-09-08T00:16:54,945 * https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T00:16:54,946 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2025-09-08T00:16:54,946 Getting page https://pypi.org/simple/scikit-bio/ 2025-09-08T00:16:54,947 Found index url https://pypi.org/simple/ 2025-09-08T00:16:55,017 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2025-09-08T00:16:55,024 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2025-09-08T00:16:55,024 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2025-09-08T00:16:55,025 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2025-09-08T00:16:55,025 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2025-09-08T00:16:55,025 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2025-09-08T00:16:55,025 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2025-09-08T00:16:55,026 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2025-09-08T00:16:55,026 Found link 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https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2025-09-08T00:16:55,028 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2025-09-08T00:16:55,028 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2025-09-08T00:16:55,028 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2025-09-08T00:16:55,028 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2025-09-08T00:16:55,029 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2025-09-08T00:16:55,029 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2025-09-08T00:16:55,029 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2025-09-08T00:16:55,029 Found link https://files.pythonhosted.org/packages/9d/77/531cf69c99cb398c5abf8545259b88ee256bfdb72e5972bcfdbcb9942751/scikit-bio-0.6.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.0 2025-09-08T00:16:55,030 Found link https://files.pythonhosted.org/packages/12/6b/1a01f3df88503d9a11916972f0b0c2aed13d516f159336b4bdcfcd04098a/scikit-bio-0.6.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.1 2025-09-08T00:16:55,030 Found link https://files.pythonhosted.org/packages/29/28/07326aa931c67d491d3053e2875b6c8f2904e661d9ab7c2840c3ae6b3780/scikit-bio-0.6.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.2 2025-09-08T00:16:55,030 Found link https://files.pythonhosted.org/packages/65/59/31e499edc0d045acab799b7117130e9c9de22371be57ac311f2f0b235dc4/scikit-bio-0.6.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.3 2025-09-08T00:16:55,030 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/59/8b/f90ee0325c7f59573bdf8d4a5a5717ca710f067a081fd46f3768600a200d/scikit_bio-0.7.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,030 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/57/c6/0864476e63935459eb4d474f210e70ca1b0aa9689bb1beccbeae582587ce/scikit_bio-0.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,031 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/ca/087675f3fd6608142be8c53e6875a1a730e0fa1250a85421677570445839/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,031 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c8/69/da203001d9a0d4f2dc14426617e5eed76c9ff059f6c2a94023bf48e204cb/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,031 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/45/97/3b928b1f075a6033326244e125f0e3a518fe75c17278359d1835ca4ccb24/scikit_bio-0.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,031 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/66/5f238ff8fa25080d5baf82287297bfd1e6dbeab45ef3ff1b0f6e1a7c017e/scikit_bio-0.7.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,031 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f9/8b/8ef6e40a818067bdaf57fa779eadbc8ef73f333dbd50fb09daeae13de1f2/scikit_bio-0.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,031 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f0/66/6cb6e9ba1e67f65a27b34fcd33b457cb0fea73f93dc184ea1bf38562f012/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,031 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/27/e359f131018cf988f1e4f5e7380db7db43ba4202ffc9ba9e8f6cfb1988f5/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,032 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/db/99/6b0ce81f81e2cfe06c899455b149e7f8393cd3ba9a8905efe18c36894420/scikit_bio-0.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,032 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/43/9b/bf339d439568a4fa0ab6e7e545c4487b1cf86e6245f98be0d922f4677ddc/scikit_bio-0.7.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,032 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1d/e9/7a5dd2e04bbd361907f5a1942fa4b6aeecfa453801f4c047c55b51036df2/scikit_bio-0.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,032 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/19/4b/b63123cf09c3375fa90cbfc02febf32cc20429a49c03d71f37febed7c52d/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,032 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f5/02/b178ca48305a230e080732dd02233e0824b1a9b41b273acf2444de116be2/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,032 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5f/a8/199cafe05bb77bf274f0a3db8f5199f4b2966db37589f9e5ec6a212c0b9c/scikit_bio-0.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,032 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d4/31/b943fcf7d4579b4751002ad9a48e62e9f0c7db542dd440f7e3e82f50f58b/scikit_bio-0.7.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,032 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e7/af/5f3452f0dce0f0a3c7ccb9f067e410b50a8d188c4fb56426f8785317333d/scikit_bio-0.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,033 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7d/20/ef1d2a8accb946cc31b5b987a46d197f69d1e89bab76b5e9cb4235a355f9/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,033 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/46/3f05eedb58e13c21f5ab7496e9735da2f008aa66038b268ea46138a3e48d/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,033 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/40/e9/2f7d72ef933e9328b929295ada98ad2c5fbdc5b3c6bd2f4d886f14d4f90a/scikit_bio-0.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,033 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b5/fa/3a7770c445111c6b957aba701887f22506faef8145965a6b9d2816cfd896/scikit_bio-0.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,033 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4e/07/e2a29ccbb31208c98ff2c7b61b00614885f781474891ebf249d85495e238/scikit_bio-0.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,033 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/89/15/829f7da8e5083f4d2e3dd1ef24faa6b32da2bf492547bd6d385e92fda127/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,033 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4a/34/687f9e4dc73e39a56277e2aa900577fccb3c99ef28a5acc5fc258028e2ac/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,034 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6c/a5/75fd40c8bf70836216fffe57bdd80c78959d5cc21c23927ada892b246f3d/scikit_bio-0.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:16:55,034 Found link https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9), version: 0.7.0 2025-09-08T00:16:55,035 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T00:16:55,035 Getting page https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T00:16:55,036 Found index url https://www.piwheels.org/simple/ 2025-09-08T00:16:55,115 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2025-09-08T00:16:55,123 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv6l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,123 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv7l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,123 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,124 Skipping link: No binaries permitted for scikit-bio: 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https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,126 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,126 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,126 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,126 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,126 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,127 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,127 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv6l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,127 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv7l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,127 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,127 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,127 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,127 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,127 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,128 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,128 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,128 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,128 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,128 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:16:55,128 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T00:16:55,128 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2025-09-08T00:16:55,154 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2025-09-08T00:16:55,155 Collecting scikit-bio==0.2.0 2025-09-08T00:16:55,157 Created temporary directory: /tmp/pip-unpack-c7d_my65 2025-09-08T00:16:55,463 Downloading scikit-bio-0.2.0.tar.gz (7.8 MB) 2025-09-08T00:16:57,206 Added scikit-bio==0.2.0 from https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-p424e9y_' 2025-09-08T00:16:57,207 Running setup.py (path:/tmp/pip-wheel-yaprnw10/scikit-bio_6ec8b858d0534b58a5a9bbba1c164d40/setup.py) egg_info for package scikit-bio 2025-09-08T00:16:57,207 Created temporary directory: /tmp/pip-pip-egg-info-ja3g5m6p 2025-09-08T00:16:57,208 Preparing metadata (setup.py): started 2025-09-08T00:16:57,208 Running command python setup.py egg_info 2025-09-08T00:16:58,125 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T00:16:58,125 warnings.warn(msg) 2025-09-08T00:16:58,532 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T00:16:58,532 !! 2025-09-08T00:16:58,532 ******************************************************************************** 2025-09-08T00:16:58,532 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T00:16:58,533 License :: OSI Approved :: BSD License 2025-09-08T00:16:58,533 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T00:16:58,533 ******************************************************************************** 2025-09-08T00:16:58,533 !! 2025-09-08T00:16:58,533 self._finalize_license_expression() 2025-09-08T00:16:58,607 running egg_info 2025-09-08T00:16:58,680 creating /tmp/pip-pip-egg-info-ja3g5m6p/scikit_bio.egg-info 2025-09-08T00:16:58,680 writing /tmp/pip-pip-egg-info-ja3g5m6p/scikit_bio.egg-info/PKG-INFO 2025-09-08T00:16:58,684 writing dependency_links to /tmp/pip-pip-egg-info-ja3g5m6p/scikit_bio.egg-info/dependency_links.txt 2025-09-08T00:16:58,686 writing requirements to /tmp/pip-pip-egg-info-ja3g5m6p/scikit_bio.egg-info/requires.txt 2025-09-08T00:16:58,686 writing top-level names to /tmp/pip-pip-egg-info-ja3g5m6p/scikit_bio.egg-info/top_level.txt 2025-09-08T00:16:58,686 writing manifest file '/tmp/pip-pip-egg-info-ja3g5m6p/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T00:16:59,005 reading manifest file '/tmp/pip-pip-egg-info-ja3g5m6p/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T00:16:59,005 reading manifest template 'MANIFEST.in' 2025-09-08T00:16:59,018 no previously-included directories found matching 'doc/build' 2025-09-08T00:16:59,020 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-08T00:16:59,022 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-08T00:16:59,022 adding license file 'COPYING.txt' 2025-09-08T00:16:59,034 writing manifest file '/tmp/pip-pip-egg-info-ja3g5m6p/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T00:16:59,171 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T00:16:59,176 Source in /tmp/pip-wheel-yaprnw10/scikit-bio_6ec8b858d0534b58a5a9bbba1c164d40 has version 0.2.0, which satisfies requirement scikit-bio==0.2.0 from https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz 2025-09-08T00:16:59,177 Removed scikit-bio==0.2.0 from https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-p424e9y_' 2025-09-08T00:16:59,184 Created temporary directory: /tmp/pip-unpack-j07tkmis 2025-09-08T00:16:59,184 Created temporary directory: /tmp/pip-unpack-924nw359 2025-09-08T00:16:59,185 Building wheels for collected packages: scikit-bio 2025-09-08T00:16:59,186 Created temporary directory: /tmp/pip-wheel-r57w_2rt 2025-09-08T00:16:59,186 DEPRECATION: Building 'scikit-bio' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'scikit-bio'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T00:16:59,187 Building wheel for scikit-bio (setup.py): started 2025-09-08T00:16:59,188 Destination directory: /tmp/pip-wheel-r57w_2rt 2025-09-08T00:16:59,188 Running command python setup.py bdist_wheel 2025-09-08T00:17:00,078 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T00:17:00,078 warnings.warn(msg) 2025-09-08T00:17:00,472 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T00:17:00,472 !! 2025-09-08T00:17:00,473 ******************************************************************************** 2025-09-08T00:17:00,473 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T00:17:00,473 License :: OSI Approved :: BSD License 2025-09-08T00:17:00,473 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T00:17:00,473 ******************************************************************************** 2025-09-08T00:17:00,473 !! 2025-09-08T00:17:00,473 self._finalize_license_expression() 2025-09-08T00:17:00,474 running bdist_wheel 2025-09-08T00:17:00,838 running build 2025-09-08T00:17:00,839 running build_py 2025-09-08T00:17:00,915 creating build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T00:17:00,915 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T00:17:00,916 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T00:17:00,917 creating build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:17:00,917 copying skbio/util/io.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:17:00,918 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:17:00,918 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:17:00,919 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:17:00,919 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:17:00,920 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:17:00,920 creating build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:17:00,921 copying skbio/tree/_trie.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:17:00,921 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:17:00,922 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:17:00,923 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:17:00,923 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:17:00,924 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:17:00,924 creating build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T00:17:00,925 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T00:17:00,925 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T00:17:00,926 creating build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:17:00,926 copying skbio/stats/spatial.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:17:00,927 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:17:00,927 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:17:00,928 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:17:00,929 creating build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:17:00,929 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:17:00,930 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:17:00,930 copying skbio/sequence/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:17:00,931 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:17:00,931 creating build/lib.linux-armv7l-cpython-313/skbio/parse 2025-09-08T00:17:00,932 copying skbio/parse/record_finder.py -> build/lib.linux-armv7l-cpython-313/skbio/parse 2025-09-08T00:17:00,932 copying skbio/parse/record.py -> build/lib.linux-armv7l-cpython-313/skbio/parse 2025-09-08T00:17:00,933 copying skbio/parse/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/parse 2025-09-08T00:17:00,933 creating build/lib.linux-armv7l-cpython-313/skbio/format 2025-09-08T00:17:00,934 copying skbio/format/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/format 2025-09-08T00:17:00,935 creating build/lib.linux-armv7l-cpython-313/skbio/draw 2025-09-08T00:17:00,935 copying skbio/draw/_distributions.py -> build/lib.linux-armv7l-cpython-313/skbio/draw 2025-09-08T00:17:00,936 copying skbio/draw/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/draw 2025-09-08T00:17:00,936 creating build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T00:17:00,936 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T00:17:00,937 creating build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:17:00,938 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:17:00,938 copying skbio/alignment/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:17:00,939 copying skbio/alignment/_alignment.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:17:00,939 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:17:00,940 creating build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T00:17:00,940 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T00:17:00,941 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T00:17:00,942 copying skbio/util/tests/test_io.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T00:17:00,942 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T00:17:00,943 creating build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:17:00,943 copying skbio/tree/tests/test_trie.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:17:00,944 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:17:00,944 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:17:00,945 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:17:00,945 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:17:00,946 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:17:00,947 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:17:00,947 copying skbio/stats/tests/test_spatial.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:17:00,948 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:17:00,948 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:17:00,949 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:17:00,950 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:17:00,950 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:17:00,950 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:17:00,951 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:17:00,951 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:17:00,952 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:17:00,953 copying skbio/stats/ordination/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:17:00,953 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:17:00,954 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:17:00,954 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:17:00,955 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:17:00,955 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:17:00,956 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:17:00,957 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:17:00,957 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:17:00,958 creating build/lib.linux-armv7l-cpython-313/skbio/stats/_subsample 2025-09-08T00:17:00,958 copying skbio/stats/_subsample/subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/_subsample 2025-09-08T00:17:00,959 copying skbio/stats/_subsample/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/_subsample 2025-09-08T00:17:00,959 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T00:17:00,960 copying skbio/stats/ordination/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T00:17:00,960 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T00:17:00,961 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:17:00,961 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:17:00,962 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:17:00,963 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:17:00,963 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:17:00,964 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:17:00,964 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:17:00,965 creating build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T00:17:00,965 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T00:17:00,966 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T00:17:00,967 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T00:17:00,967 creating build/lib.linux-armv7l-cpython-313/skbio/parse/tests 2025-09-08T00:17:00,968 copying skbio/parse/tests/test_record_finder.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/tests 2025-09-08T00:17:00,968 copying skbio/parse/tests/test_record.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/tests 2025-09-08T00:17:00,969 copying skbio/parse/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/tests 2025-09-08T00:17:00,970 creating build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:17:00,970 copying skbio/parse/sequences/iterator.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:17:00,970 copying skbio/parse/sequences/fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:17:00,971 copying skbio/parse/sequences/fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:17:00,971 copying skbio/parse/sequences/factory.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:17:00,972 copying skbio/parse/sequences/clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:17:00,972 copying skbio/parse/sequences/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:17:00,973 copying skbio/parse/sequences/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:17:00,974 creating build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:17:00,974 copying skbio/parse/sequences/tests/test_iterator.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:17:00,975 copying skbio/parse/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:17:00,975 copying skbio/parse/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:17:00,976 copying skbio/parse/sequences/tests/test_factory.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:17:00,976 copying skbio/parse/sequences/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:17:00,977 copying skbio/parse/sequences/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:17:00,977 creating build/lib.linux-armv7l-cpython-313/skbio/format/sequences 2025-09-08T00:17:00,978 copying skbio/format/sequences/fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences 2025-09-08T00:17:00,978 copying skbio/format/sequences/fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences 2025-09-08T00:17:00,979 copying skbio/format/sequences/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences 2025-09-08T00:17:00,979 creating build/lib.linux-armv7l-cpython-313/skbio/format/sequences/tests 2025-09-08T00:17:00,980 copying skbio/format/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences/tests 2025-09-08T00:17:00,980 copying skbio/format/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences/tests 2025-09-08T00:17:00,981 copying skbio/format/sequences/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences/tests 2025-09-08T00:17:00,981 creating build/lib.linux-armv7l-cpython-313/skbio/draw/tests 2025-09-08T00:17:00,982 copying skbio/draw/tests/test_distributions.py -> build/lib.linux-armv7l-cpython-313/skbio/draw/tests 2025-09-08T00:17:00,982 copying skbio/draw/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/draw/tests 2025-09-08T00:17:00,983 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T00:17:00,983 copying skbio/diversity/beta/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T00:17:00,984 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T00:17:00,985 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:17:00,985 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:17:00,986 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:17:00,986 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:17:00,987 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:17:00,987 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:17:00,988 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:17:00,988 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T00:17:00,989 copying skbio/diversity/beta/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T00:17:00,989 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T00:17:00,990 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:17:00,990 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:17:00,991 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:17:00,991 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:17:00,992 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:17:00,992 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:17:00,993 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:17:00,994 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:17:00,994 copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:17:00,995 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:17:00,995 copying skbio/alignment/tests/test_alignment.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:17:00,996 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:17:00,997 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/_ssw 2025-09-08T00:17:00,997 copying skbio/alignment/_ssw/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/_ssw 2025-09-08T00:17:01,010 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,010 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,011 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,012 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,012 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,013 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,013 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,014 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,014 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,015 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,015 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,016 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,016 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:17:01,017 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,017 copying skbio/stats/ordination/tests/data/v_error9 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,018 copying skbio/stats/ordination/tests/data/v_error8 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,018 copying skbio/stats/ordination/tests/data/v_error7 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,019 copying skbio/stats/ordination/tests/data/v_error6 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,019 copying skbio/stats/ordination/tests/data/v_error5 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,020 copying skbio/stats/ordination/tests/data/v_error4 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,020 copying skbio/stats/ordination/tests/data/v_error3 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,021 copying skbio/stats/ordination/tests/data/v_error2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,021 copying skbio/stats/ordination/tests/data/v_error14 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,022 copying skbio/stats/ordination/tests/data/v_error13 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,022 copying skbio/stats/ordination/tests/data/v_error12 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,023 copying skbio/stats/ordination/tests/data/v_error11 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,023 copying skbio/stats/ordination/tests/data/v_error10 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,024 copying skbio/stats/ordination/tests/data/v_error1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,024 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,025 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,026 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,026 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,027 copying skbio/stats/ordination/tests/data/L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,027 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,028 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,028 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,029 copying skbio/stats/ordination/tests/data/exp_OrdRes_RDA_species -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,029 copying skbio/stats/ordination/tests/data/exp_OrdRes_RDA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,030 copying skbio/stats/ordination/tests/data/exp_OrdRes_RDA_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,030 copying skbio/stats/ordination/tests/data/exp_OrdRes_PCoA_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,031 copying skbio/stats/ordination/tests/data/exp_OrdRes_CCA_species -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,031 copying skbio/stats/ordination/tests/data/exp_OrdRes_CCA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,032 copying skbio/stats/ordination/tests/data/exp_OrdRes_CCA_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,032 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,033 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,033 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,034 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,034 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,035 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,035 copying skbio/stats/ordination/tests/data/example3_scores -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,036 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,036 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,037 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,037 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,038 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,038 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,039 copying skbio/stats/ordination/tests/data/example2_scores -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,039 copying skbio/stats/ordination/tests/data/error7 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,040 copying skbio/stats/ordination/tests/data/error6 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,040 copying skbio/stats/ordination/tests/data/error5 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,041 copying skbio/stats/ordination/tests/data/error4 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,041 copying skbio/stats/ordination/tests/data/error3 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,042 copying skbio/stats/ordination/tests/data/error2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,042 copying skbio/stats/ordination/tests/data/error1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:17:01,043 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,043 copying skbio/stats/distance/tests/data/pwmantel_exp_results_too_few_permutations.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,044 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,044 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,045 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,045 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,046 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,046 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,047 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,047 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,048 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,048 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,049 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,049 copying skbio/stats/distance/tests/data/dm_3x3.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,050 copying skbio/stats/distance/tests/data/dm_2x2_asym.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,050 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,051 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,051 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,052 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,052 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,053 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,054 copying skbio/stats/distance/tests/data/bad_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:17:01,054 creating build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:17:01,054 copying skbio/parse/sequences/tests/data/noextensionfasta -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:17:01,055 copying skbio/parse/sequences/tests/data/fq1.fq -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:17:01,055 copying skbio/parse/sequences/tests/data/fq1.fastq.gz -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:17:01,056 copying skbio/parse/sequences/tests/data/fna1.qual -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:17:01,056 copying skbio/parse/sequences/tests/data/fna1.fna.gz -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:17:01,057 copying skbio/parse/sequences/tests/data/fna1.fasta -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:17:01,065 running build_ext 2025-09-08T00:17:01,385 building 'skbio.stats._subsample._subsample' extension 2025-09-08T00:17:01,386 creating build/temp.linux-armv7l-cpython-313/skbio/stats/_subsample 2025-09-08T00:17:01,387 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c skbio/stats/_subsample/_subsample.c -o build/temp.linux-armv7l-cpython-313/skbio/stats/_subsample/_subsample.o 2025-09-08T00:17:01,832 skbio/stats/_subsample/_subsample.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-08T00:17:01,834 skbio/stats/_subsample/_subsample.c:1872:52: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-08T00:17:01,834 1872 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); 2025-09-08T00:17:01,834 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:17:01,834 | PyBUF_C_CONTIGUOUS 2025-09-08T00:17:01,835 skbio/stats/_subsample/_subsample.c:1872:52: note: each undeclared identifier is reported only once for each function it appears in 2025-09-08T00:17:01,857 skbio/stats/_subsample/_subsample.c:1910:52: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-08T00:17:01,857 1910 | __pyx_t_1 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); 2025-09-08T00:17:01,858 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:17:01,858 | PyBUF_F_CONTIGUOUS 2025-09-08T00:17:01,866 skbio/stats/_subsample/_subsample.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-08T00:17:01,869 skbio/stats/_subsample/_subsample.c:2915:29: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T00:17:01,869 2915 | if (unlikely(__pyx_v_descr->names == Py_None)) { 2025-09-08T00:17:01,869 | ^~ 2025-09-08T00:17:01,869 skbio/stats/_subsample/_subsample.c:518:43: note: in definition of macro ‘unlikely’ 2025-09-08T00:17:01,869 518 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T00:17:01,869 | ^ 2025-09-08T00:17:01,872 skbio/stats/_subsample/_subsample.c:2919:28: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T00:17:01,872 2919 | __pyx_t_1 = __pyx_v_descr->names; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0; 2025-09-08T00:17:01,872 | ^~ 2025-09-08T00:17:01,876 skbio/stats/_subsample/_subsample.c:2937:47: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T00:17:01,876 2937 | __pyx_t_3 = PyObject_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 795; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; 2025-09-08T00:17:01,876 | ^~ 2025-09-08T00:17:01,883 skbio/stats/_subsample/_subsample.c:3115:81: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-08T00:17:01,884 3115 | (__pyx_v_offset[__pyx_t_10]) = ((__pyx_v_offset[__pyx_t_10]) + __pyx_v_child->elsize); 2025-09-08T00:17:01,884 | ^~ 2025-09-08T00:17:01,896 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_InitCachedConstants’: 2025-09-08T00:17:01,900 skbio/stats/_subsample/_subsample.c:3861:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T00:17:01,900 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_caporaso_Dropbox_code_sci, __pyx_n_s_subsample_without_replacement, 17, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T00:17:01,900 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:17:01,900 In file included from /usr/include/python3.13/Python.h:101, 2025-09-08T00:17:01,900 from skbio/stats/_subsample/_subsample.c:16: 2025-09-08T00:17:01,900 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T00:17:01,901 213 | PyCode_New( 2025-09-08T00:17:01,901 | ^~~~~~~~~~ 2025-09-08T00:17:01,904 skbio/stats/_subsample/_subsample.c:3861:262: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T00:17:01,904 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_caporaso_Dropbox_code_sci, __pyx_n_s_subsample_without_replacement, 17, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T00:17:01,905 | ^~ 2025-09-08T00:17:01,905 | | 2025-09-08T00:17:01,905 | int 2025-09-08T00:17:01,905 skbio/stats/_subsample/_subsample.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:17:01,905 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:17:01,905 | ^~~~~ 2025-09-08T00:17:01,905 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T00:17:01,905 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T00:17:01,905 | ~~~~~~~~~~^ 2025-09-08T00:17:01,908 skbio/stats/_subsample/_subsample.c:3861:266: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T00:17:01,908 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_caporaso_Dropbox_code_sci, __pyx_n_s_subsample_without_replacement, 17, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T00:17:01,909 | ^~~~~~~~~~~~~~~~~ 2025-09-08T00:17:01,909 | | 2025-09-08T00:17:01,909 | PyObject * {aka struct _object *} 2025-09-08T00:17:01,909 skbio/stats/_subsample/_subsample.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:17:01,909 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:17:01,909 | ^~~~ 2025-09-08T00:17:01,909 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T00:17:01,909 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T00:17:01,909 | ~~~~^ 2025-09-08T00:17:01,912 skbio/stats/_subsample/_subsample.c:124:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T00:17:01,912 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:17:01,913 | ^~~~~~~~~~ 2025-09-08T00:17:01,913 skbio/stats/_subsample/_subsample.c:3861:33: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:17:01,913 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_caporaso_Dropbox_code_sci, __pyx_n_s_subsample_without_replacement, 17, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T00:17:01,913 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:17:01,913 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T00:17:01,913 213 | PyCode_New( 2025-09-08T00:17:01,913 | ^~~~~~~~~~ 2025-09-08T00:17:01,937 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-08T00:17:01,943 skbio/stats/_subsample/_subsample.c:4148:22: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-08T00:17:01,943 4148 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2025-09-08T00:17:01,943 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T00:17:01,943 | PyDict_GET_SIZE 2025-09-08T00:17:01,987 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_ErrRestore’: 2025-09-08T00:17:01,991 skbio/stats/_subsample/_subsample.c:4939:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T00:17:01,991 4939 | tmp_type = tstate->curexc_type; 2025-09-08T00:17:01,992 | ^~ 2025-09-08T00:17:01,996 skbio/stats/_subsample/_subsample.c:4940:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T00:17:01,996 4940 | tmp_value = tstate->curexc_value; 2025-09-08T00:17:01,996 | ^~ 2025-09-08T00:17:02,001 skbio/stats/_subsample/_subsample.c:4941:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:17:02,001 4941 | tmp_tb = tstate->curexc_traceback; 2025-09-08T00:17:02,001 | ^~ 2025-09-08T00:17:02,005 skbio/stats/_subsample/_subsample.c:4942:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T00:17:02,005 4942 | tstate->curexc_type = type; 2025-09-08T00:17:02,006 | ^~ 2025-09-08T00:17:02,010 skbio/stats/_subsample/_subsample.c:4943:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T00:17:02,010 4943 | tstate->curexc_value = value; 2025-09-08T00:17:02,010 | ^~ 2025-09-08T00:17:02,015 skbio/stats/_subsample/_subsample.c:4944:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:17:02,015 4944 | tstate->curexc_traceback = tb; 2025-09-08T00:17:02,015 | ^~ 2025-09-08T00:17:02,015 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_ErrFetch’: 2025-09-08T00:17:02,020 skbio/stats/_subsample/_subsample.c:4955:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T00:17:02,020 4955 | *type = tstate->curexc_type; 2025-09-08T00:17:02,020 | ^~ 2025-09-08T00:17:02,024 skbio/stats/_subsample/_subsample.c:4956:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T00:17:02,024 4956 | *value = tstate->curexc_value; 2025-09-08T00:17:02,024 | ^~ 2025-09-08T00:17:02,029 skbio/stats/_subsample/_subsample.c:4957:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:17:02,029 4957 | *tb = tstate->curexc_traceback; 2025-09-08T00:17:02,029 | ^~ 2025-09-08T00:17:02,034 skbio/stats/_subsample/_subsample.c:4958:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T00:17:02,034 4958 | tstate->curexc_type = 0; 2025-09-08T00:17:02,034 | ^~ 2025-09-08T00:17:02,038 skbio/stats/_subsample/_subsample.c:4959:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T00:17:02,038 4959 | tstate->curexc_value = 0; 2025-09-08T00:17:02,038 | ^~ 2025-09-08T00:17:02,043 skbio/stats/_subsample/_subsample.c:4960:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:17:02,043 4960 | tstate->curexc_traceback = 0; 2025-09-08T00:17:02,043 | ^~ 2025-09-08T00:17:02,054 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_Raise’: 2025-09-08T00:17:02,059 skbio/stats/_subsample/_subsample.c:5118:34: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:17:02,059 5118 | PyObject* tmp_tb = tstate->curexc_traceback; 2025-09-08T00:17:02,059 | ^~ 2025-09-08T00:17:02,064 skbio/stats/_subsample/_subsample.c:5121:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:17:02,064 5121 | tstate->curexc_traceback = tb; 2025-09-08T00:17:02,064 | ^~ 2025-09-08T00:17:02,072 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_PyInt_As_Py_intptr_t’: 2025-09-08T00:17:02,077 skbio/stats/_subsample/_subsample.c:5441:27: error: too few arguments to function ‘_PyLong_AsByteArray’ 2025-09-08T00:17:02,077 5441 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T00:17:02,077 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:17:02,077 In file included from /usr/include/python3.13/longobject.h:107, 2025-09-08T00:17:02,077 from /usr/include/python3.13/Python.h:81: 2025-09-08T00:17:02,078 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T00:17:02,078 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T00:17:02,078 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:17:02,082 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_PyInt_As_int’: 2025-09-08T00:17:02,087 skbio/stats/_subsample/_subsample.c:5807:27: error: too few arguments to function ‘_PyLong_AsByteArray’ 2025-09-08T00:17:02,087 5807 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T00:17:02,087 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:17:02,088 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T00:17:02,088 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T00:17:02,088 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:17:02,091 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_PyInt_As_long’: 2025-09-08T00:17:02,096 skbio/stats/_subsample/_subsample.c:5933:27: error: too few arguments to function ‘_PyLong_AsByteArray’ 2025-09-08T00:17:02,096 5933 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T00:17:02,097 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:17:02,097 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T00:17:02,097 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T00:17:02,097 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:17:02,112 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_CreateCodeObjectForTraceback’: 2025-09-08T00:17:02,117 skbio/stats/_subsample/_subsample.c:6166:5: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T00:17:02,118 6166 | py_code = __Pyx_PyCode_New( 2025-09-08T00:17:02,118 | ^~~~~~~ 2025-09-08T00:17:02,118 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T00:17:02,118 213 | PyCode_New( 2025-09-08T00:17:02,118 | ^~~~~~~~~~ 2025-09-08T00:17:02,123 skbio/stats/_subsample/_subsample.c:6180:9: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T00:17:02,123 6180 | py_line, /*int firstlineno,*/ 2025-09-08T00:17:02,123 | ^~~~~~~ 2025-09-08T00:17:02,124 | | 2025-09-08T00:17:02,124 | int 2025-09-08T00:17:02,124 skbio/stats/_subsample/_subsample.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:17:02,124 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:17:02,124 | ^~~~~ 2025-09-08T00:17:02,124 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T00:17:02,124 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T00:17:02,124 | ~~~~~~~~~~^ 2025-09-08T00:17:02,130 skbio/stats/_subsample/_subsample.c:6181:9: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T00:17:02,130 6181 | __pyx_empty_bytes /*PyObject *lnotab*/ 2025-09-08T00:17:02,130 | ^~~~~~~~~~~~~~~~~ 2025-09-08T00:17:02,130 | | 2025-09-08T00:17:02,130 | PyObject * {aka struct _object *} 2025-09-08T00:17:02,130 skbio/stats/_subsample/_subsample.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:17:02,130 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:17:02,130 | ^~~~ 2025-09-08T00:17:02,131 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T00:17:02,131 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T00:17:02,131 | ~~~~^ 2025-09-08T00:17:02,136 skbio/stats/_subsample/_subsample.c:124:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T00:17:02,136 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:17:02,137 | ^~~~~~~~~~ 2025-09-08T00:17:02,137 skbio/stats/_subsample/_subsample.c:6166:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:17:02,137 6166 | py_code = __Pyx_PyCode_New( 2025-09-08T00:17:02,137 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:17:02,137 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T00:17:02,137 213 | PyCode_New( 2025-09-08T00:17:02,137 | ^~~~~~~~~~ 2025-09-08T00:17:02,141 skbio/stats/_subsample/_subsample.c: In function ‘__Pyx_AddTraceback’: 2025-09-08T00:17:02,147 skbio/stats/_subsample/_subsample.c:6212:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T00:17:02,147 6212 | py_frame->f_lineno = py_line; 2025-09-08T00:17:02,147 | ^~ 2025-09-08T00:17:02,191 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T00:17:02,363 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T00:17:02,374 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T00:17:02,374 exec(compile('"'"''"'"''"'"' 2025-09-08T00:17:02,374 # This is -- a caller that pip uses to run setup.py 2025-09-08T00:17:02,374 # 2025-09-08T00:17:02,374 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T00:17:02,374 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T00:17:02,374 # - It provides a clear error message when setuptools is not installed. 2025-09-08T00:17:02,374 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T00:17:02,374 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T00:17:02,374 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T00:17:02,374 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T00:17:02,374 import os, sys, tokenize, traceback 2025-09-08T00:17:02,374 2025-09-08T00:17:02,374 try: 2025-09-08T00:17:02,374 import setuptools 2025-09-08T00:17:02,374 except ImportError: 2025-09-08T00:17:02,374 print( 2025-09-08T00:17:02,374 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T00:17:02,374 "the build environment with exception:", 2025-09-08T00:17:02,374 file=sys.stderr, 2025-09-08T00:17:02,374 ) 2025-09-08T00:17:02,374 traceback.print_exc() 2025-09-08T00:17:02,374 sys.exit(1) 2025-09-08T00:17:02,374 2025-09-08T00:17:02,374 __file__ = %r 2025-09-08T00:17:02,374 sys.argv[0] = __file__ 2025-09-08T00:17:02,374 2025-09-08T00:17:02,374 if os.path.exists(__file__): 2025-09-08T00:17:02,374 filename = __file__ 2025-09-08T00:17:02,374 with tokenize.open(__file__) as f: 2025-09-08T00:17:02,374 setup_py_code = f.read() 2025-09-08T00:17:02,374 else: 2025-09-08T00:17:02,374 filename = "" 2025-09-08T00:17:02,374 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T00:17:02,374 2025-09-08T00:17:02,374 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T00:17:02,374 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-yaprnw10/scikit-bio_6ec8b858d0534b58a5a9bbba1c164d40/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-r57w_2rt[/] 2025-09-08T00:17:02,374 [bold magenta]cwd[/]: /tmp/pip-wheel-yaprnw10/scikit-bio_6ec8b858d0534b58a5a9bbba1c164d40/ 2025-09-08T00:17:02,375 Building wheel for scikit-bio (setup.py): finished with status 'error' 2025-09-08T00:17:02,375 ERROR: Failed building wheel for scikit-bio 2025-09-08T00:17:02,376 Running setup.py clean for scikit-bio 2025-09-08T00:17:02,377 Running command python setup.py clean 2025-09-08T00:17:03,260 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T00:17:03,261 warnings.warn(msg) 2025-09-08T00:17:03,650 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T00:17:03,650 !! 2025-09-08T00:17:03,651 ******************************************************************************** 2025-09-08T00:17:03,651 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T00:17:03,651 License :: OSI Approved :: BSD License 2025-09-08T00:17:03,651 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T00:17:03,651 ******************************************************************************** 2025-09-08T00:17:03,651 !! 2025-09-08T00:17:03,651 self._finalize_license_expression() 2025-09-08T00:17:03,725 running clean 2025-09-08T00:17:03,870 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T00:17:03,870 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T00:17:03,879 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T00:17:03,879 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T00:17:03,879 removing 'build' 2025-09-08T00:17:04,016 Failed to build scikit-bio 2025-09-08T00:17:04,017 ERROR: Failed to build one or more wheels 2025-09-08T00:17:04,018 Exception information: 2025-09-08T00:17:04,018 Traceback (most recent call last): 2025-09-08T00:17:04,018 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T00:17:04,018 status = _inner_run() 2025-09-08T00:17:04,018 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T00:17:04,018 return self.run(options, args) 2025-09-08T00:17:04,018 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T00:17:04,018 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T00:17:04,018 return func(self, options, args) 2025-09-08T00:17:04,018 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T00:17:04,018 raise CommandError("Failed to build one or more wheels") 2025-09-08T00:17:04,018 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T00:17:04,022 Removed build tracker: '/tmp/pip-build-tracker-p424e9y_'