2025-09-07T23:50:41,814 Created temporary directory: /tmp/pip-build-tracker-b5k5jdja
2025-09-07T23:50:41,814 Initialized build tracking at /tmp/pip-build-tracker-b5k5jdja
2025-09-07T23:50:41,814 Created build tracker: /tmp/pip-build-tracker-b5k5jdja
2025-09-07T23:50:41,814 Entered build tracker: /tmp/pip-build-tracker-b5k5jdja
2025-09-07T23:50:41,815 Created temporary directory: /tmp/pip-wheel-370yshhv
2025-09-07T23:50:41,818 Created temporary directory: /tmp/pip-ephem-wheel-cache-iz5qdkrl
2025-09-07T23:50:41,882 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-07T23:50:41,884 2 location(s) to search for versions of python-libsbml:
2025-09-07T23:50:41,884 * https://pypi.org/simple/python-libsbml/
2025-09-07T23:50:41,884 * https://www.piwheels.org/simple/python-libsbml/
2025-09-07T23:50:41,884 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2025-09-07T23:50:41,885 Getting page https://pypi.org/simple/python-libsbml/
2025-09-07T23:50:41,886 Found index url https://pypi.org/simple/
2025-09-07T23:50:42,054 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2025-09-07T23:50:42,136   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2025-09-07T23:50:42,137   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2025-09-07T23:50:42,137   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2025-09-07T23:50:42,137   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2025-09-07T23:50:42,137   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2025-09-07T23:50:42,138   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,138   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2025-09-07T23:50:42,138   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,138   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,138   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,138   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,143   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,143   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,143   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2025-09-07T23:50:42,143   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,143   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,143   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2025-09-07T23:50:42,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,147   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2025-09-07T23:50:42,148   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,148   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,148   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,148   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,148   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,148   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,148   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,151   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,151   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,151   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2025-09-07T23:50:42,151   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,151   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,151   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,151   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,154   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,154   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,154   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,154   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2025-09-07T23:50:42,154   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,154   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,155   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,155   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,155   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,155   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,155   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,155   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,155   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,157   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,157   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,157   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,157   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,157   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,157   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,157   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,158   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,158   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,158   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,158   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,158   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,158   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,158   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,159   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,159   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,159   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,159   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,159   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,159   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,159   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,160   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,160   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,160   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2025-09-07T23:50:42,160   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,160   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,160   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,161   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,161   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,161   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,161   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,161   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,161   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,161   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,162   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,162   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,162   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,162   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,162   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,162   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,162   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,163   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,163   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,163   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,163   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,163   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,163   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,163   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,164   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,164   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,164   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,164   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,164   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,164   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,164   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,165   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2025-09-07T23:50:42,165   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,165   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,165   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,165   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,165   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,165   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,166   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,166   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,166   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,166   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,166   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,166   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,166   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,167   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,167   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,167   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,167   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,167   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,167   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,167   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,168   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,168   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,168   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,168   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,168   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,168   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,168   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,169   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,169   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,169   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,169   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,169   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,169   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,169   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,169   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,170   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,170   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,170   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,170   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,170   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,170   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,170   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,172   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,172   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,172   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,172   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,172   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,172   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,172   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,173   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,173   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,173   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,173   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,173   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,173   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,173   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,173   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,174   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,174   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,174   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,174   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,174   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,174   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,174   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,175   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,175   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,175   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,175   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,175   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,175   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,175   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,176   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,176   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,176   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,176   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,176   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,176   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,176   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,176   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,177   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,177   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,177   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,177   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,177   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,177   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,177   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,178   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,178   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,178   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,178   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,178   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,178   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,178   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,179   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,179   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,179   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,179   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,179   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,179   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,179   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,180   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,180   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,180   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,180   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,180   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,180   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,180   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,180   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,181   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,181   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,181   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,181   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,181   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,181   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,181   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,182   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,182   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,182   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,182   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,182   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,182   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,182   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,183   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,183   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,183   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,183   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,183   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,183   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,183   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,184   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,184   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,184   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,184   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,184   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,184   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,184   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,185   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,185   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,185   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,185   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,185   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,185   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,185   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,185   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,186   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,186   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,186   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,186   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2025-09-07T23:50:42,186   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,186   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,188   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,188   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,188   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,188   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,188   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,188   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,188   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,189   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,189   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,189   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,189   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,189   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,189   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,189   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,189   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,190   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,190   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,190   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,190   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,190   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,190   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,190   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,191   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,191   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,191   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,191   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,191   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,191   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,191   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,192   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,192   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,192   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,192   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,192   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,192   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,192   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,193   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,193   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,193   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,193   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2025-09-07T23:50:42,193   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,193   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,194   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,194   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,194   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,194   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,194   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,194   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,194   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,194   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,195   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,195   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,195   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,195   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,195   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,195   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,195   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,196   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,196   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,196   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,196   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,196   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,196   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,196   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,197   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,197   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,197   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,197   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,197   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,197   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,197   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,199   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,199   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,199   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,199   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,199   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,199   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,199   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,200   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,200   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,200   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2025-09-07T23:50:42,200   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,200   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,200   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,201   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,201   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,201   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,201   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,201   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,201   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,201   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,205   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,205   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,205   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,205   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,205   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,205   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,205   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,207   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,207   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,207   Found link https://files.pythonhosted.org/packages/b5/47/7a6063cb8de95b786a93ad3cef3760a72ca2f344db333c1694b7abd228b7/python-libsbml-5.20.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.2
2025-09-07T23:50:42,207   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/04/26903a22496521f7d74ba196d9cc5657ed9349c68deb29766081d9e50414/python_libsbml-5.20.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,207   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3d/45/98defd138e1901f301b49dd88290617a1d9d9d0e8e595ab515380429773a/python_libsbml-5.20.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,207   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/c6/2e18caa75409aa36d434f9d166f8624d9b7b8be63f959a9598bffa504e3d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,207   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/8f/2e6b389d653ab757abc10231f6e31f842fc3443c03429243d583134a88b6/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,208   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/7f/6788f019fd747df56978e3e76a871541e1986fc32fbad7f9b2d1a044125d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,208   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/91/dabd7be439071b41738e023671cefb6585bc5c5c87412462355615d51529/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,208   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/53/ac/3a753b37ce8d257b7d15d011368b99595a533d409c6d1e576d8b2e4e95f0/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,208   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/3a/f45a1ce0190e30a3445cf8084e127f09607746dc1ae6af1897a33bfacaac/python_libsbml-5.20.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,208   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/9991bb8e94f9bdec1429634355471845a6a3dd1cd87ef25b414c8e6f4525/python_libsbml-5.20.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,208   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/3f/61a99c450a4cce58ac209f73489a899d771e575a0cd4c78af239d087d51a/python_libsbml-5.20.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,208   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/76/be1c1d1d631048857c1251385f1ea4e98434ac51292df86bfefc95c75f31/python_libsbml-5.20.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,209   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/63/d668630e42dacce62517fd5e12f220813057a29e50fca69d9009fac89332/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,209   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/74/e38a3ff2e270458108a7ff73df4017320634ba58af0dce728f74910bddc0/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,209   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/65/0040257a7dac93d053643baa798919df5368c19b661699e03a11897ab5f9/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,209   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/57/0e/650eb72f69d0d77b11bb85bf5f533ab8561910fd263cab7ba1bc08a2fc5e/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,209   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c5/3ac9cf395c7ff268eebc649dd0a8d540772c5ab516e2ac9fc45cad43f8b7/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,209   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/e5/331030fb11adce42e0920dd66451dbd78794d53bc4d3b4bb42e88f59d78b/python_libsbml-5.20.2-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,209   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/45/d6188b56f4928a1ba7a1f55ee0153ab7e8b03f4538a6235c2cd95a3d1a07/python_libsbml-5.20.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,210   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/22/58/3e9ffea465efca2b604e3d9a05e599d4bf3034f9bed3a11647821e1281b0/python_libsbml-5.20.2-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,210   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ed/7c/07e507837f43eeffc97b7a3d0e2f975c53455cbdfbf75ab0a207ae286173/python_libsbml-5.20.2-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,210   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/db/96d432ed90795b06677cb2fb1173ada6af6bb8b490889994edfb7d459484/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,210   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/72/6d50597e242f809325d800e5298f914b1502f005f9250f5ed1924b91201d/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,210   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/51/c34bb7e4cf57e935b245769fe43953b10e8275a5254964bd77c6c24a2909/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,210   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/92/6705ad6d9f565efcc903f2e05c525fab20e041637d58789e64e75ce554f4/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,210   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/3e/f4e038e6eda9583dbc301655feca81fffe7e47d2472d1aa3994ced906fcf/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,211   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/05/19694615bdbce9662022a7e4cb1c9a32827e2b6333369d82fc229b570be4/python_libsbml-5.20.2-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,211   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/dc/ce7fd468c172856d691c02cabd70869fd0cf096ef27514b1926a4f985006/python_libsbml-5.20.2-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,211   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/74/218dd9f207049d9bc314f4e721edac2b542a73275db7acf599372086152a/python_libsbml-5.20.2-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,211   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/3b/08a0aea25adae6be135f663849c3877fc7766501ee7b0f2765699b9c6661/python_libsbml-5.20.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,211   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e6/1b/d623d8731b75797ac27d51a408f785b84b1fef320b0bf25cbe5e156dc53b/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,211   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/fe/f1df672a5ee732cd2d137672d2deafe97c0677670e928d4c225071f8c079/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,211   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/da/3631b93a3326fe174ee1507d113a4f3b5d3e62ebe5d717ddadb2725c726d/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/56/c6cdf2f7913be720110279b1c1c0f12fdc8ddf1b4494798d35ba78afe0b5/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/95/e3b6b579c4942a6f2e476454cc18c3f8bd703eac1741aed2e8d1a000d892/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/6f/c1e9afda82db0e6243e9e11c95a2e8276e59669b129cffc1e788b56baac4/python_libsbml-5.20.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/88/bb18a417cafaffecf7545454eaf8d66ea505b050146780d04584429d09ef/python_libsbml-5.20.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/c8/350c41479d55ba7faa7684a47470aad4d7a64187e13fffb63bdf64f1c6b1/python_libsbml-5.20.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fa/28/920e87bd0ac86ce4fa39405e04531b5aef65e81bd2692cf6d32d74ab1f6e/python_libsbml-5.20.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/52/34006a61844de53a1343e6424bcbfbfba7a69ecf604e298b09719cf3f776/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/51/06c2893ae9924ab7ab969438354397180c15517381e2407ffeee01f2ffd1/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,213   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/a8/f692640f8dd26dd80b5b1e52d35288cd66dce3aef45ce33389b4908b8a96/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,213   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/9a/a23ed03cc9843587c159ed7dfe87a0fc5981620a8c4239d0b7cb5d1ced3d/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,213   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/dd/5ba423e743e6a1248f7a260addd96ae0ed8877a9d3fc673cc9fc04d1e583/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,213   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/2e/1aa54758d80c73dcad2ac7be72f94c2e6a80231e41cc4f181e756c312ff8/python_libsbml-5.20.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,213   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/e9/3aa778c48058f73596a284c9da221edb0f4064fd0c6718c5a2b090376291/python_libsbml-5.20.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,213   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/3e/40f8ddd356ac0da9d7a68f7e76fe2d1f1b6e493ac1d7d84e85c7db0a5151/python_libsbml-5.20.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,213   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/8e/412f7feb28529a9d74f2f268d19e339215453b2ddc403fa722543327e9c4/python_libsbml-5.20.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,214   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/c1/b6224136f86d061d660706b6baff0aca9c5b93b9065b27ce5e60679b8c32/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,214   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/a9/d826781ff9cba1fc25819f0b0784190fb0aed6cedd017f6d275203fa9f20/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,214   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/d6/f81f1223273281bf4926750f7ffe3ce8e4b7b6b03456fe9fe40e1d48ce9f/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,214   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/78/bcbfa20734ed0b28b76f9237f4ff8fc786d8e97d43d402bcb06e39f3d7e9/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,214   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/f0/8a9d7920dce46184777baa3b5b368ebf09de0a6c4408def6d33797aff2fc/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,214   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/36/4df59c750ded7484a98b90b3265d884b993c1eb636c394885c5fdaa54c88/python_libsbml-5.20.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,214   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/65/9dae381f8856cd9bc8b84282ce79179a410ae56468120935b592168425f0/python_libsbml-5.20.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,215   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/c7/e8b736a73a77b9f445bf4ab3d21e944f5c3b9fe09b4e13545458bfa3032f/python_libsbml-5.20.2-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,215   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/94/991c7ca6a639d5dde00928ed1b1be8afeba72c1afd54b229f47b55bbfab9/python_libsbml-5.20.2-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,215   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/fc/79e5a26756c3e7d93085b18d2cc4dcf6aa083a3bd9a6929829ee0dc2fd53/python_libsbml-5.20.2-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,215   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/c1/1cc74cd93fdd9a80f280fed49ac11860d493cf0b00f5ae423dec0c56ed55/python_libsbml-5.20.2-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,215   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/16/ca/572dd53742081b13f59f57a4f114d6fd32ee177cf7cff45eadc38b26e70e/python_libsbml-5.20.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,215   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/16/b92b5d1607b08b29df6636cef1d3d0c4e6ab0a7af8abc858e6564c1750a4/python_libsbml-5.20.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,215   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/14/60557f93f37dbdd0a58796e0fd832b6cc3e8194caaadc7a4e78d83ef15e6/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/91/968a70814dceb1a1002c313ac80de94c6515c6ed9d580d569371581ec549/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/3f/b7bb4c06c4de558a71117a18d5e59f30f0719e43244c7e0e9010370eff11/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/33/78752be98d7cb891266d15758057efc3ac392ffa5203a2947506fa15856f/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/20/429e411767983fd38d520470acf8c34d08299d25bf05e6456210796256a3/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/0f/558289f95919730d7e341337b14d880c89912277550f03a3f78e585706b3/python_libsbml-5.20.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/5a/f435f7a12f11f1cc8cf505452814f21cde6ef6d8e2f75a4a323ab47bd0da/python_libsbml-5.20.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/5a/9b2d31a91f5e94ff44bca259fb8ea57dab7e2cadd66d54888dedbd7efdb7/python_libsbml-5.20.4-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/e4/79a57f56cc0fcb9ccf74a480a2102a5b91109958fbd830f92c2e6435e905/python_libsbml-5.20.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,217   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/a7/18dbc2129f0187cb00404de81ff51fd7a907a11dedfed28c10d3b03eac32/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,217   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/91/53c5c6a005eb529fc844ef5cc6f079cd85070d2a2e96227cd3644eceec88/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,217   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/4b/f11aab01f1483ca770ef7af61a41005a1fc5a3b1004c097b0a92e7046e61/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,217   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/7f/57e791cf4495ba2e8e07386ee070373eb925cbb7ffb80f4dc2db42e1f7ac/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,217   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/13/a97e56c822875a7ea616277e1801e2bea3f536ecbb292297cf947bb11bee/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,217   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/24/53784997e5bae3def9e6279fdc71c70c59e4efeea8a31adce5816778d2e1/python_libsbml-5.20.4-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,217   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/15/bd/6838154413a83a8f6dc5b60bafd80ba73f1554c47c99f39cfe958c64d907/python_libsbml-5.20.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,218   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/6c/43a8b4e49ac8885d9a9ae856c8a442864d987a40e82b32358ea718a75441/python_libsbml-5.20.4-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,218   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4d/3bad65cbb54ba14d5d983874d47d2352efe6f45cd737573d64d6091980ba/python_libsbml-5.20.4-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,218   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/db/3f9f75d42106144df9cec628a4c9f24a024256372f7155f24f4608932c14/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,218   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/0a/a0ac99ea56235166b5441bd9c605fbbfa5130f8611a725da6368d628d4a4/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,218   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/d3/9db568a391f82ec47da42ae557f3e429acfee6364b205a06ae2ccb602af1/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,218   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/b2/3dae1e7f2d5742f1b9aae565aea55d2a978059c324a891a9bfd921b75024/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,218   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/48/79f5737c66329717f1c98f7ffad4af5bcf053477ef76f4e65c71b20c573e/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,219   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/28/b5049445492235606844c1d8e88317bd0545417ce1c268a4c34f98946d3a/python_libsbml-5.20.4-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,219   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/ee/4bbb01a4c7ce916fc2f26d836aa5aa0e3a90f9e526f8d6effefdf06079bc/python_libsbml-5.20.4-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,219   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/25/ec5b2921781757dbfc030f6b4502580662e156223f1358676858a27cf9b9/python_libsbml-5.20.4-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,219   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/28/cbd7a16304666555af50adafceb85796c633fecee649e72f2fef8b34d296/python_libsbml-5.20.4-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,219   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7c/1db267adce246d8b18d46d80a4cd4efb8ee0f56eb25d42e4a4a27474166c/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,219   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/78/5dd03cddfaa1a2ed43b32b984135b8fe0469835eaaf3a432224fc2347862/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,219   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5c/c4/800ff7ccb91390d67eca1bf4e5fd479f201e849bd4ac6aee39782f395127/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/ac/d6607f3ce489b82b4a51f86172b48ae6c4d8f278fa46fd4117fffe6097c0/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/17/0a4504d7851a8b6ad704148e72e00d4fcd8172a7e4b02b09f521632ceb35/python_libsbml-5.20.4-cp313-cp313-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/80/bf/e94a0cee6f9c9413d070b4285ba055a44e8b912426fed66fb0bb26ab0818/python_libsbml-5.20.4-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/a7/7f319330d9eabacbf32b0ed9bde3f8387088548f62756b4d14048c830ffe/python_libsbml-5.20.4-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/ac/a5fba140496a4c18259ceaa81c3292a139d626a791f9c621cd733f64f727/python_libsbml-5.20.4-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/ee/ee8fb79daf7133def31a34eb5efe53205924b5b9c640d4febbff1fe6ca64/python_libsbml-5.20.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/c7/1a6998b0cee736c2380345bdc27ae2bd8840c806cb36833028667a3b2605/python_libsbml-5.20.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/68/24d9b592da6a5416c533c659d208fed08ddcc10b442b1d1d2ee270a915aa/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,221   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/1d/75a7565e1af082e72b7a63fa4f186600a297ece167db2360627ebb71193a/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,221   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/6b/b1ee160b127ca459beb2fcf51285208fc223bcc40b1bc6ac43879352d632/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,221   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/62/f0c26ed535543f6bfb205e87e4418c3c37c12d7825fd30f247f0132f08a3/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,221   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/e6/d8f7554548e6fa79691301726fc9d6c3e0eedadbfb65992e1d917ab4b4f2/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,221   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/0d/686219eb0c02627571575cc73eb46dcfd1c9a43bd97fae491da105aa84a3/python_libsbml-5.20.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,221   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/5f/92323c94c8a96c498eca5673aa39228f48984a5f5443d887a86ceb9a2e62/python_libsbml-5.20.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,221   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/94/47/c55da9ac26a7992f720000338f92b8eeb87c50fced41eb7cf56a6e9b4c67/python_libsbml-5.20.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,222   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f7/e7af5fa8941eeef5883eab1c6dc241f58950715c72f793e4d89f04cb51b0/python_libsbml-5.20.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,222   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/d1/32b0f68766364b51adcf147717b4f56f374df7ae78a08436e8719f6df888/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,222   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/be/10f32360a55cb8b1395b2ba26476455cec3a870b518eb0d910e277f20fc8/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,222   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c9/5e56a08bf385080b9a9a1b8e41eb04c4a4bd649a7f6eb46dc5f72c8db420/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,222   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/64/f8404da7ba27cb4905df4713048e8194a9c711c7dae312d33b2b3a821bd6/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,222   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e8/10/ff8ab1d3a721b60827124c14f5252b7d332f3351c1e517ca4d429f1ba4c2/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,222   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/dd/659e49b36e545bdecdc3394aae0a51d55655fb7e6a5e122eb417e2ea17ea/python_libsbml-5.20.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,223   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/f4/93b12b7433288cd57c91d66401cc029fed14163b47753fdeecb7b9ec72e8/python_libsbml-5.20.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,223   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/39/85ff81ad6a098f069e6680accd97659d02efc62c32a81416717e65c00f09/python_libsbml-5.20.4-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,223   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/be/910bbd6c0c8669be8df6764bee0e6c39729c0ab6212834ecf68d24ea5be8/python_libsbml-5.20.4-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,223   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/db/7cb8f4a9d6e4d6a96072df1f409414d5628f0aa58dc91a45c601e3d711f1/python_libsbml-5.20.4-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,223   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/38/2d9c53cd3e4f3d2bb3e0dbea03ec7ec9de4507ba6e5ce73b1982e858298f/python_libsbml-5.20.4-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,223   Found link https://files.pythonhosted.org/packages/5d/74/1bf1b9883de7bc928e1727e4502c690ec09a8f7b9f2d53edb8fa452d23c3/python_libsbml-5.20.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.4
2025-09-07T23:50:42,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/56/40b610acdbde447a90b91503c81d5cc591dec29815cd427a26280fad5c84/python_libsbml-5.20.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/72/96520783019f16ec6b0189b66ea8fea7f43d11c269feaf68c42fd6c79500/python_libsbml-5.20.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e1/9f/66466d20861c14bdc18fc393bb065da7da9e0a3972b5533557f956ac1d0c/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/36/a1e96927d948b9d5bc1b3e57ea6154677c06e234ad190a2f726c331465c8/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/51/da98b3adc80c3d89a9b997b16d4a6448207d26e15c99bf464c4decbe852a/python_libsbml-5.20.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/ef/d44ea1ff0042439c29cc864c353e1ca9a062a753d5e8288ca6e6e4ba853c/python_libsbml-5.20.5-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/66/d5fc713d4a369d17522e3816be5234289cd27fc731c112ce698387382d89/python_libsbml-5.20.5-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/3f/199d494311da757de5a94404e88a0c6bbae99e64865c98dcf415b03d595a/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,225   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/17/7f1f0ad2f3b0054d1e762b6cbdd25153fd904135ce07561b0fd79dd83d90/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,225   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/a5/ef3cdd88c805181ed3da79a9ec85ee707872bacb7bc1cbc736efa9c3cd78/python_libsbml-5.20.5-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,225   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/d6/269bd9d7dfb69025e98c7afe2285a9c6d66b980209bbdbd54ffd995c592f/python_libsbml-5.20.5-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,225   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/c0/3ba180b1d18c5d1427e3772fa1402f72ce6edaac345e4aab14af61f50916/python_libsbml-5.20.5-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,225   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/7f/59669e43e75428a6e740bb11bf40f0a5f4afc7a6604f7071560dd1f7fab3/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,225   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/02/696c5a0dc72a3949224207534219afe54951381f2ad4ee1df5e03833edbe/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,225   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/68/528c874841022d90fc93854197d327aab7c65b36c8a8d954a5280e9520b4/python_libsbml-5.20.5-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,226   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/8f/e98feeb2d0a6ef95716123cb808b25723dabbcde5d0f555e89360be1d8d6/python_libsbml-5.20.5-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,226   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/45/2e64419d50428b67a7592850121afee11f83448781506bbc389f737c2597/python_libsbml-5.20.5-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,226   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/8f/3e211bbdaf69ca0c789530353cdf02711f95e70ac8581a08ce0c45903c80/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,226   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/92/a8a86812776326ffdfac6c5addc7581f6399f7b825b31dd90e211f63739f/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,226   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/49/70f6288db3ce3ef006627318d518235836c47b34e4aa7716760e33b639b9/python_libsbml-5.20.5-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,226   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/ed/28754b6c5043e55437f0175dd5f4132ff8ace0af32040c129f564ba88fe8/python_libsbml-5.20.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,226   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f2/678c5dd13f67c229c5a4edd57fefaa653311bb2bfeaf47ed02e9671af61f/python_libsbml-5.20.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,227   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/92/41/c0d5007db0988a242562f8ef8cf303302c70497effda82c6459dce4b600c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,227   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2c/5d/bb31237034edc0654363ce7e0d667cb0303da88def3083ad538b03cdee7c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,227   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/d2/c0d8c2166310a5c6fb201c05f9817fc66f17bbb3d70bde3faae15016eec1/python_libsbml-5.20.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-07T23:50:42,227   Found link https://files.pythonhosted.org/packages/5d/4b/b49fe7384cc9e727e88c58713edc3b4a1c469673937d8d31cafe23261120/python_libsbml-5.20.5.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.5
2025-09-07T23:50:42,228 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2025-09-07T23:50:42,228 Getting page https://www.piwheels.org/simple/python-libsbml/
2025-09-07T23:50:42,229 Found index url https://www.piwheels.org/simple/
2025-09-07T23:50:42,326 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2025-09-07T23:50:42,346   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,346   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv7l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,346   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv6l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,346   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv7l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,347   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp311-cp311-linux_armv6l.whl#sha256=4faec8be0d9c1f8accb40055cbf08bb3f266b740242ce421e848f1de997d87db (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,347   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp311-cp311-linux_armv7l.whl#sha256=4faec8be0d9c1f8accb40055cbf08bb3f266b740242ce421e848f1de997d87db (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,347   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv6l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,347   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv7l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,348   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv6l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,348   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv7l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,348   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,348   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv7l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,348   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv6l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,349   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv7l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,349   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv6l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,349   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv7l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,349   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv6l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,349   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv7l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,349   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv6l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,350   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv7l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,350   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv7l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,350   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv6l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,350   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv7l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,350   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv6l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,351   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv6l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,351   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv7l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,351   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv6l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,351   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv7l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,351   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv6l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,352   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv7l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,352   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv7l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,352   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv6l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,352   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp311-cp311-linux_armv6l.whl#sha256=99f3bc173559c37c1f788969eb598026cafc9e944158e2023b737c9101dfcafa (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,352   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp311-cp311-linux_armv7l.whl#sha256=99f3bc173559c37c1f788969eb598026cafc9e944158e2023b737c9101dfcafa (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,353   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp39-cp39-linux_armv6l.whl#sha256=03f09a2a301fb92a748c27cfaca2c913aa216f5b77f0d6615cc6261c06a5b8f1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,353   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp39-cp39-linux_armv7l.whl#sha256=03f09a2a301fb92a748c27cfaca2c913aa216f5b77f0d6615cc6261c06a5b8f1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,353   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,353   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,353   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv6l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,354   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv7l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,354   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp311-cp311-linux_armv6l.whl#sha256=fd840f49adf057ea4cb0cf91aa5289ecaf17045a69d326cded46d006149ea6f6 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,354   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp311-cp311-linux_armv7l.whl#sha256=fd840f49adf057ea4cb0cf91aa5289ecaf17045a69d326cded46d006149ea6f6 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,354   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,354   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,355   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv6l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,355   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,355   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,355   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,355   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,356   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,356   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,356   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,356   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv6l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,356   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv7l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,357   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv6l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,357   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,357   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,357   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,357   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,358   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,358   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv6l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,358   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv7l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,358   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,358   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,358   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,359   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,359   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,359   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,359   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv6l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,359   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,360   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,360   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,360   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,360   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,360   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,361   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,361   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv6l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,361   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv7l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,361   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,362   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,362   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,362   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,362   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,362   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,363   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv6l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,363   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv7l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,363   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,363   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-07T23:50:42,363 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2025-09-07T23:50:42,363 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2025-09-07T23:50:42,388 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2025-09-07T23:50:42,389 Collecting python-libsbml==5.10.1
2025-09-07T23:50:42,390   Created temporary directory: /tmp/pip-unpack-_tc6vzkc
2025-09-07T23:50:42,798   Downloading python-libsbml-5.10.1.tar.gz (3.3 MB)
2025-09-07T23:50:44,771   Added python-libsbml==5.10.1 from https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz to build tracker '/tmp/pip-build-tracker-b5k5jdja'
2025-09-07T23:50:44,772   Running setup.py (path:/tmp/pip-wheel-370yshhv/python-libsbml_29c13f1fabd943aaae87976a5f8d38ac/setup.py) egg_info for package python-libsbml
2025-09-07T23:50:44,772   Created temporary directory: /tmp/pip-pip-egg-info-wjfnjmzc
2025-09-07T23:50:44,773   Preparing metadata (setup.py): started
2025-09-07T23:50:44,773   Running command python setup.py egg_info
2025-09-07T23:50:45,299   /tmp/pip-wheel-370yshhv/python-libsbml_29c13f1fabd943aaae87976a5f8d38ac/setup.py:55: SyntaxWarning: invalid escape sequence '\D'
2025-09-07T23:50:45,299     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-07T23:50:46,367   Preparing metadata (setup.py): finished with status 'done'
2025-09-07T23:50:46,372   Source in /tmp/pip-wheel-370yshhv/python-libsbml_29c13f1fabd943aaae87976a5f8d38ac has version 5.10.1, which satisfies requirement python-libsbml==5.10.1 from https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz
2025-09-07T23:50:46,372   Removed python-libsbml==5.10.1 from https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz from build tracker '/tmp/pip-build-tracker-b5k5jdja'
2025-09-07T23:50:46,375 Created temporary directory: /tmp/pip-unpack-fdxa7_jk
2025-09-07T23:50:46,375 Created temporary directory: /tmp/pip-unpack-6iijq75i
2025-09-07T23:50:46,375 Building wheels for collected packages: python-libsbml
2025-09-07T23:50:46,376   Created temporary directory: /tmp/pip-wheel-044yrhzn
2025-09-07T23:50:46,377   DEPRECATION: Building 'python-libsbml' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'python-libsbml'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-07T23:50:46,378   Building wheel for python-libsbml (setup.py): started
2025-09-07T23:50:46,379   Destination directory: /tmp/pip-wheel-044yrhzn
2025-09-07T23:50:46,379   Running command python setup.py bdist_wheel
2025-09-07T23:50:46,897   /tmp/pip-wheel-370yshhv/python-libsbml_29c13f1fabd943aaae87976a5f8d38ac/setup.py:55: SyntaxWarning: invalid escape sequence '\D'
2025-09-07T23:50:46,898     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-07T23:50:51,065   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_MangledTypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2025-09-07T23:50:51,065   ./base/libsbml_wrap.cpp:569:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,065     569 |       register size_t l = 0;
2025-09-07T23:50:51,065         |                       ^
2025-09-07T23:50:51,065   ./base/libsbml_wrap.cpp:570:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,065     570 |       register size_t r = iter->size - 1;
2025-09-07T23:50:51,066         |                       ^
2025-09-07T23:50:51,066   ./base/libsbml_wrap.cpp:573:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,066     573 |         register size_t i = (l + r) >> 1;
2025-09-07T23:50:51,066         |                         ^
2025-09-07T23:50:51,067   ./base/libsbml_wrap.cpp:576:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,067     576 |           register int compare = strcmp(name, iname);
2025-09-07T23:50:51,067         |                        ^~~~~~~
2025-09-07T23:50:51,068   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_TypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2025-09-07T23:50:51,068   ./base/libsbml_wrap.cpp:620:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,069     620 |       register size_t i = 0;
2025-09-07T23:50:51,069         |                       ^
2025-09-07T23:50:51,070   ./base/libsbml_wrap.cpp: In function ‘char* SWIG_PackData(char*, void*, size_t)’:
2025-09-07T23:50:51,070   ./base/libsbml_wrap.cpp:639:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,070     639 |   register const unsigned char *u = (unsigned char *) ptr;
2025-09-07T23:50:51,070         |                                 ^
2025-09-07T23:50:51,070   ./base/libsbml_wrap.cpp:640:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,071     640 |   register const unsigned char *eu =  u + sz;
2025-09-07T23:50:51,071         |                                 ^~
2025-09-07T23:50:51,071   ./base/libsbml_wrap.cpp:642:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,071     642 |     register unsigned char uu = *u;
2025-09-07T23:50:51,071         |                            ^~
2025-09-07T23:50:51,072   ./base/libsbml_wrap.cpp: In function ‘const char* SWIG_UnpackData(const char*, void*, size_t)’:
2025-09-07T23:50:51,073   ./base/libsbml_wrap.cpp:654:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,073     654 |   register unsigned char *u = (unsigned char *) ptr;
2025-09-07T23:50:51,073         |                           ^
2025-09-07T23:50:51,073   ./base/libsbml_wrap.cpp:655:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,073     655 |   register const unsigned char *eu = u + sz;
2025-09-07T23:50:51,073         |                                 ^~
2025-09-07T23:50:51,074   ./base/libsbml_wrap.cpp:657:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,074     657 |     register char d = *(c++);
2025-09-07T23:50:51,074         |                   ^
2025-09-07T23:50:51,074   ./base/libsbml_wrap.cpp:658:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,075     658 |     register unsigned char uu;
2025-09-07T23:50:51,075         |                            ^~
2025-09-07T23:50:51,084   ./base/libsbml_wrap.cpp: In function ‘int SWIG_Python_UnpackTuple(PyObject*, const char*, Py_ssize_t, Py_ssize_t, PyObject**)’:
2025-09-07T23:50:51,085   ./base/libsbml_wrap.cpp:1322:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,085    1322 |       register int i;
2025-09-07T23:50:51,085         |                    ^
2025-09-07T23:50:51,086   ./base/libsbml_wrap.cpp:1332:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,086    1332 |     register Py_ssize_t l = PyTuple_GET_SIZE(args);
2025-09-07T23:50:51,086         |                         ^
2025-09-07T23:50:51,088   ./base/libsbml_wrap.cpp:1342:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-07T23:50:51,088    1342 |       register int i;
2025-09-07T23:50:51,088         |                    ^
2025-09-07T23:50:52,031   ./base/libsbml_wrap.cpp: At global scope:
2025-09-07T23:50:52,031   ./base/libsbml_wrap.cpp:3202:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:52,032    3202 |     UnknownExceptionHandler(std::unexpected_handler nh = handler)
2025-09-07T23:50:52,032         |                                                                 ^
2025-09-07T23:50:52,038   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2025-09-07T23:50:52,038   ./base/libsbml_wrap.cpp:3204:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:52,038    3204 |       old = std::set_unexpected(nh);
2025-09-07T23:50:52,038         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:50:52,038   In file included from /usr/include/c++/14/ios:41,
2025-09-07T23:50:52,038                    from /usr/include/c++/14/ostream:40,
2025-09-07T23:50:52,038                    from /usr/include/c++/14/iostream:41,
2025-09-07T23:50:52,038                    from ./base/libsbml_wrap.cpp:2956:
2025-09-07T23:50:52,039   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-07T23:50:52,039      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-07T23:50:52,039         |                      ^~~~~~~~~~~~~~
2025-09-07T23:50:52,039   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2025-09-07T23:50:52,039   ./base/libsbml_wrap.cpp:3209:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:52,039    3209 |       std::set_unexpected(old);
2025-09-07T23:50:52,040         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-07T23:50:52,040   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-07T23:50:52,040      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-07T23:50:52,040         |                      ^~~~~~~~~~~~~~
2025-09-07T23:50:52,754   In file included from ./base/libsbml.h:45,
2025-09-07T23:50:52,754                    from ./base/libsbml_wrap.cpp:3795:
2025-09-07T23:50:52,754   ./base//sbml/ListOf.h: At global scope:
2025-09-07T23:50:52,755   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:52,755      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:50:52,755         |                           ^~~~~~~~~~~~~~
2025-09-07T23:50:52,755   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:50:52,755                    from ./base/libsbml_wrap.cpp:2955:
2025-09-07T23:50:52,755   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:50:52,755     117 |     struct unary_function
2025-09-07T23:50:52,755         |            ^~~~~~~~~~~~~~
2025-09-07T23:50:53,586   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-07T23:50:53,586                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-07T23:50:53,586                    from ./base/../swig/fbc-package.h:31,
2025-09-07T23:50:53,586                    from ./base/../swig/libsbml-packages.h:8,
2025-09-07T23:50:53,586                    from ./base/libsbml_wrap.cpp:3799:
2025-09-07T23:50:53,586   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:53,587     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-07T23:50:53,587         |                                          ^~~~~~~~~~~~~~
2025-09-07T23:50:53,587   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:50:53,587     117 |     struct unary_function
2025-09-07T23:50:53,587         |            ^~~~~~~~~~~~~~
2025-09-07T23:50:53,593   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:53,593     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-07T23:50:53,593         |                                      ^~~~~~~~~~~~~~
2025-09-07T23:50:53,593   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:50:53,594     117 |     struct unary_function
2025-09-07T23:50:53,594         |            ^~~~~~~~~~~~~~
2025-09-07T23:50:53,609   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-07T23:50:53,609   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:53,609     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-07T23:50:53,610         |                                            ^~~~~~~~~~~~~~
2025-09-07T23:50:53,610   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:50:53,610     117 |     struct unary_function
2025-09-07T23:50:53,610         |            ^~~~~~~~~~~~~~
2025-09-07T23:50:53,633   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-07T23:50:53,633                    from ./base/../swig/layout-package.h:49,
2025-09-07T23:50:53,633                    from ./base/../swig/libsbml-packages.h:11:
2025-09-07T23:50:53,634   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-07T23:50:53,634     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-07T23:50:53,634         |                             ^~~~~~~~
2025-09-07T23:50:53,634   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-07T23:50:53,634     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-07T23:50:53,634         |                              ^~~~~~~~
2025-09-07T23:50:53,639   In file included from ./base//sbml/packages/layout/sbml/CubicBezier.h:56,
2025-09-07T23:50:53,639                    from ./base/../swig/layout-package.h:50:
2025-09-07T23:50:53,639   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-07T23:50:53,640     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-07T23:50:53,640         |                        ^~~~~~~~
2025-09-07T23:50:53,640   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-07T23:50:53,640     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-07T23:50:53,640         |                        ^~~~~~~~
2025-09-07T23:50:53,645   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-07T23:50:53,646     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-07T23:50:53,646         |                             ^~~~~~~~
2025-09-07T23:50:53,646   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61,
2025-09-07T23:50:53,646                    from ./base/../swig/layout-package.h:54:
2025-09-07T23:50:53,646   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-07T23:50:53,646     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-07T23:50:53,646         |                          ^~~~~~~~
2025-09-07T23:50:53,649   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-07T23:50:53,649     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-07T23:50:53,649         |                             ^~~~~~~~
2025-09-07T23:50:53,649   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-07T23:50:53,649                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-07T23:50:53,650   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-07T23:50:53,650     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-07T23:50:53,650         |                                   ^~~~~~~~
2025-09-07T23:50:53,654   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-07T23:50:53,654     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-07T23:50:53,655         |                             ^~~~~~~~
2025-09-07T23:50:53,655   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-07T23:50:53,655     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-07T23:50:53,655         |                           ^~~~~~~~
2025-09-07T23:50:53,658   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-07T23:50:53,658     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-07T23:50:53,658         |                             ^~~~~~~~
2025-09-07T23:50:53,658   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-07T23:50:53,658   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-07T23:50:53,658     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-07T23:50:53,658         |                      ^~~~~~~~
2025-09-07T23:50:53,674   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-07T23:50:53,675     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-07T23:50:53,675         |                             ^~~~~~~~
2025-09-07T23:50:53,675   In file included from ./base/../swig/layout-package.h:57:
2025-09-07T23:50:53,675   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-07T23:50:53,675     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-07T23:50:53,675         |                            ^~~~~~~~
2025-09-07T23:50:53,680   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-07T23:50:53,680     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-07T23:50:53,680         |                             ^~~~~~~~
2025-09-07T23:50:53,680   In file included from ./base/../swig/layout-package.h:58:
2025-09-07T23:50:53,680   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-07T23:50:53,681     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-07T23:50:53,681         |                          ^~~~~~~~
2025-09-07T23:50:53,826   ./base/libsbml_wrap.cpp:4703:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:53,826    4703 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2025-09-07T23:50:53,826         |                                    ^~~~~~~~~~~~~~~
2025-09-07T23:50:53,827   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-07T23:50:53,827     131 |     struct binary_function
2025-09-07T23:50:53,827         |            ^~~~~~~~~~~~~~~
2025-09-07T23:50:53,830   ./base/libsbml_wrap.cpp:4728:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:53,830    4728 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2025-09-07T23:50:53,831         |                                                ^~~~~~~~~~~~~~~
2025-09-07T23:50:53,831   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-07T23:50:53,831     131 |     struct binary_function
2025-09-07T23:50:53,831         |            ^~~~~~~~~~~~~~~
2025-09-07T23:50:53,835   ./base/libsbml_wrap.cpp:4738:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:50:53,835    4738 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2025-09-07T23:50:53,835         |                                                ^~~~~~~~~~~~~~~
2025-09-07T23:50:53,835   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-07T23:50:53,836     131 |     struct binary_function
2025-09-07T23:50:53,836         |            ^~~~~~~~~~~~~~~
2025-09-07T23:56:45,406   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:56:45,407                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:56:45,407                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:56:45,407                    from ./base/sbml/AlgebraicRule.cpp:49:
2025-09-07T23:56:45,407   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:56:45,407      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:56:45,407         |                           ^~~~~~~~~~~~~~
2025-09-07T23:56:45,407   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:56:45,408                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:56:45,408                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:56:45,408                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:56:45,408                    from ./base/sbml/AlgebraicRule.cpp:34:
2025-09-07T23:56:45,408   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:56:45,408     117 |     struct unary_function
2025-09-07T23:56:45,408         |            ^~~~~~~~~~~~~~
2025-09-07T23:56:49,125   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:56:49,125                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:56:49,125                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:56:49,126                    from ./base/sbml/AssignmentRule.cpp:49:
2025-09-07T23:56:49,126   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:56:49,126      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:56:49,126         |                           ^~~~~~~~~~~~~~
2025-09-07T23:56:49,127   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:56:49,127                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:56:49,127                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:56:49,127                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:56:49,127                    from ./base/sbml/AssignmentRule.cpp:34:
2025-09-07T23:56:49,127   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:56:49,127     117 |     struct unary_function
2025-09-07T23:56:49,127         |            ^~~~~~~~~~~~~~
2025-09-07T23:56:52,838   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:56:52,838                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:56:52,838                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:56:52,838                    from ./base/sbml/Compartment.cpp:41:
2025-09-07T23:56:52,838   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:56:52,838      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:56:52,838         |                           ^~~~~~~~~~~~~~
2025-09-07T23:56:52,838   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:56:52,839                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:56:52,839                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:56:52,839                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:56:52,839                    from ./base/sbml/Compartment.cpp:35:
2025-09-07T23:56:52,839   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:56:52,839     117 |     struct unary_function
2025-09-07T23:56:52,839         |            ^~~~~~~~~~~~~~
2025-09-07T23:56:53,074   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-07T23:56:53,074   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:56:53,074     146 |   if (&orig == NULL)
2025-09-07T23:56:53,074         |             ^
2025-09-07T23:56:53,074   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2025-09-07T23:56:53,074     143 | Compartment::Compartment(const Compartment& orig) :
2025-09-07T23:56:53,074         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:56:53,076   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-07T23:56:53,076   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:56:53,076     175 |   if (&rhs == NULL)
2025-09-07T23:56:53,076         |            ^
2025-09-07T23:56:53,076   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2025-09-07T23:56:53,077     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2025-09-07T23:56:53,077         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:56:53,082   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-07T23:56:53,083   ./base/sbml/Compartment.cpp:496:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:56:53,083     496 |   if (&(sid) == NULL)
2025-09-07T23:56:53,083         |              ^
2025-09-07T23:56:53,083   ./base/sbml/Compartment.cpp:485:40: note: ‘sid’ declared here
2025-09-07T23:56:53,083     485 | Compartment::setId (const std::string& sid)
2025-09-07T23:56:53,083         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:56:53,083   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-07T23:56:53,083   ./base/sbml/Compartment.cpp:521:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-07T23:56:53,084     521 |   if (&(name) == NULL)
2025-09-07T23:56:53,084         |               ^
2025-09-07T23:56:53,084   ./base/sbml/Compartment.cpp:516:42: note: ‘name’ declared here
2025-09-07T23:56:53,084     516 | Compartment::setName (const std::string& name)
2025-09-07T23:56:53,084         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:56:53,084   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-07T23:56:53,084   ./base/sbml/Compartment.cpp:551:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:56:53,085     551 |   if (&(sid) == NULL)
2025-09-07T23:56:53,085         |              ^
2025-09-07T23:56:53,085   ./base/sbml/Compartment.cpp:549:53: note: ‘sid’ declared here
2025-09-07T23:56:53,085     549 | Compartment::setCompartmentType (const std::string& sid)
2025-09-07T23:56:53,085         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:56:53,087   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-07T23:56:53,087   ./base/sbml/Compartment.cpp:673:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:56:53,087     673 |   if (&(sid) == NULL)
2025-09-07T23:56:53,087         |              ^
2025-09-07T23:56:53,087   ./base/sbml/Compartment.cpp:671:43: note: ‘sid’ declared here
2025-09-07T23:56:53,087     671 | Compartment::setUnits (const std::string& sid)
2025-09-07T23:56:53,088         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:56:53,088   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-07T23:56:53,088   ./base/sbml/Compartment.cpp:695:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:56:53,088     695 |   if (&(sid) == NULL)
2025-09-07T23:56:53,088         |              ^
2025-09-07T23:56:53,088   ./base/sbml/Compartment.cpp:693:45: note: ‘sid’ declared here
2025-09-07T23:56:53,088     693 | Compartment::setOutside (const std::string& sid)
2025-09-07T23:56:53,088         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:56:53,128   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-07T23:56:53,128   ./base/sbml/Compartment.cpp:1534:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:56:53,128    1534 |   if (&(sid) == NULL)
2025-09-07T23:56:53,128         |              ^
2025-09-07T23:56:53,128   ./base/sbml/Compartment.cpp:1530:45: note: ‘sid’ declared here
2025-09-07T23:56:53,128    1530 | ListOfCompartments::get (const std::string& sid) const
2025-09-07T23:56:53,128         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:56:53,132   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-07T23:56:53,132   ./base/sbml/Compartment.cpp:1562:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:56:53,132    1562 |   if (&(sid) != NULL)
2025-09-07T23:56:53,132         |              ^
2025-09-07T23:56:53,132   ./base/sbml/Compartment.cpp:1557:48: note: ‘sid’ declared here
2025-09-07T23:56:53,132    1557 | ListOfCompartments::remove (const std::string& sid)
2025-09-07T23:56:53,132         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:56:53,137   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2025-09-07T23:56:53,137   ./base/sbml/Compartment.cpp:1640:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:56:53,137    1640 |   catch (SBMLConstructorException)
2025-09-07T23:56:53,137         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:56:53,138   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:56:53,138   ./base/sbml/Compartment.cpp:1656:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:56:53,138    1656 |   catch (SBMLConstructorException)
2025-09-07T23:56:53,138         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:56:53,664   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-07T23:56:53,665   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:56:53,665     146 |   if (&orig == NULL)
2025-09-07T23:56:53,665         |   ^~
2025-09-07T23:56:53,665   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-07T23:56:53,665   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:56:53,665     175 |   if (&rhs == NULL)
2025-09-07T23:56:53,665         |   ^~
2025-09-07T23:56:53,668   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-07T23:56:53,668   ./base/sbml/Compartment.cpp:496:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:56:53,668     496 |   if (&(sid) == NULL)
2025-09-07T23:56:53,668         |   ^~
2025-09-07T23:56:53,668   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-07T23:56:53,668   ./base/sbml/Compartment.cpp:521:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:56:53,668     521 |   if (&(name) == NULL)
2025-09-07T23:56:53,669         |   ^~
2025-09-07T23:56:53,669   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-07T23:56:53,669   ./base/sbml/Compartment.cpp:551:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:56:53,669     551 |   if (&(sid) == NULL)
2025-09-07T23:56:53,669         |   ^~
2025-09-07T23:56:53,669   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-07T23:56:53,669   ./base/sbml/Compartment.cpp:673:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:56:53,669     673 |   if (&(sid) == NULL)
2025-09-07T23:56:53,669         |   ^~
2025-09-07T23:56:53,670   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-07T23:56:53,670   ./base/sbml/Compartment.cpp:695:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:56:53,670     695 |   if (&(sid) == NULL)
2025-09-07T23:56:53,670         |   ^~
2025-09-07T23:56:53,674   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-07T23:56:53,674   ./base/sbml/Compartment.cpp:1534:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:56:53,675    1534 |   if (&(sid) == NULL)
2025-09-07T23:56:53,675         |   ^~
2025-09-07T23:56:53,683   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-07T23:56:53,683   ./base/sbml/Compartment.cpp:1562:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:56:53,683    1562 |   if (&(sid) != NULL)
2025-09-07T23:56:53,683         |   ^~
2025-09-07T23:57:01,460   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:57:01,460                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:57:01,461                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:57:01,461                    from ./base/sbml/CompartmentType.cpp:40:
2025-09-07T23:57:01,461   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:01,461      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:01,461         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:01,461   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:57:01,461                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:57:01,461                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:57:01,462                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:57:01,462                    from ./base/sbml/CompartmentType.cpp:33:
2025-09-07T23:57:01,462   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:01,462     117 |     struct unary_function
2025-09-07T23:57:01,462         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:01,693   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-07T23:57:01,693   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:01,694      92 |   if (&orig == NULL)
2025-09-07T23:57:01,694         |             ^
2025-09-07T23:57:01,694   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2025-09-07T23:57:01,694      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2025-09-07T23:57:01,694         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:01,695   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-07T23:57:01,695   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:57:01,695     110 |   if (&rhs == NULL)
2025-09-07T23:57:01,695         |            ^
2025-09-07T23:57:01,695   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2025-09-07T23:57:01,695     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2025-09-07T23:57:01,695         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:01,698   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-07T23:57:01,698   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:01,698     207 |   if (&(sid) == NULL)
2025-09-07T23:57:01,698         |              ^
2025-09-07T23:57:01,698   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2025-09-07T23:57:01,698     196 | CompartmentType::setId (const std::string& sid)
2025-09-07T23:57:01,699         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:01,699   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-07T23:57:01,699   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-07T23:57:01,699     232 |   if (&(name) == NULL)
2025-09-07T23:57:01,699         |               ^
2025-09-07T23:57:01,699   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2025-09-07T23:57:01,699     227 | CompartmentType::setName (const std::string& name)
2025-09-07T23:57:01,699         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:01,709   ./base/sbml/CompartmentType.cpp: At global scope:
2025-09-07T23:57:01,710   ./base/sbml/CompartmentType.cpp:543:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:01,710     543 | struct IdEqCT : public unary_function<SBase*, bool>
2025-09-07T23:57:01,710         |                        ^~~~~~~~~~~~~~
2025-09-07T23:57:01,710   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:01,710     117 |     struct unary_function
2025-09-07T23:57:01,710         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:01,713   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-07T23:57:01,713   ./base/sbml/CompartmentType.cpp:568:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:01,713     568 |   if (&(sid) == NULL)
2025-09-07T23:57:01,713         |              ^
2025-09-07T23:57:01,714   ./base/sbml/CompartmentType.cpp:564:49: note: ‘sid’ declared here
2025-09-07T23:57:01,714     564 | ListOfCompartmentTypes::get (const std::string& sid) const
2025-09-07T23:57:01,714         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:01,717   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-07T23:57:01,717   ./base/sbml/CompartmentType.cpp:596:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:01,717     596 |   if (&(sid) != NULL)
2025-09-07T23:57:01,717         |              ^
2025-09-07T23:57:01,717   ./base/sbml/CompartmentType.cpp:591:52: note: ‘sid’ declared here
2025-09-07T23:57:01,717     591 | ListOfCompartmentTypes::remove (const std::string& sid)
2025-09-07T23:57:01,717         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:01,722   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2025-09-07T23:57:01,722   ./base/sbml/CompartmentType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:01,722     674 |   catch (SBMLConstructorException)
2025-09-07T23:57:01,722         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:01,723   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:57:01,723   ./base/sbml/CompartmentType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:01,723     690 |   catch (SBMLConstructorException)
2025-09-07T23:57:01,723         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:02,210   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-07T23:57:02,210   ./base/sbml/CompartmentType.cpp:568:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:02,211     568 |   if (&(sid) == NULL)
2025-09-07T23:57:02,211         |   ^~
2025-09-07T23:57:02,213   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-07T23:57:02,213   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:02,214      92 |   if (&orig == NULL)
2025-09-07T23:57:02,214         |   ^~
2025-09-07T23:57:02,214   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-07T23:57:02,214   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:02,214     110 |   if (&rhs == NULL)
2025-09-07T23:57:02,214         |   ^~
2025-09-07T23:57:02,216   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-07T23:57:02,216   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:02,216     207 |   if (&(sid) == NULL)
2025-09-07T23:57:02,216         |   ^~
2025-09-07T23:57:02,217   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-07T23:57:02,217   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:02,217     232 |   if (&(name) == NULL)
2025-09-07T23:57:02,217         |   ^~
2025-09-07T23:57:02,224   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-07T23:57:02,224   ./base/sbml/CompartmentType.cpp:596:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:02,224     596 |   if (&(sid) != NULL)
2025-09-07T23:57:02,224         |   ^~
2025-09-07T23:57:07,057   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:57:07,057                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:57:07,057                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:57:07,057                    from ./base/sbml/Constraint.cpp:43:
2025-09-07T23:57:07,057   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:07,057      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:07,058         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:07,058   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:57:07,058                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:57:07,058                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:57:07,058                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:57:07,058                    from ./base/sbml/Constraint.cpp:33:
2025-09-07T23:57:07,058   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:07,058     117 |     struct unary_function
2025-09-07T23:57:07,058         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:07,288   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-07T23:57:07,288   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:07,288     101 |   if (&orig == NULL)
2025-09-07T23:57:07,288         |             ^
2025-09-07T23:57:07,288   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2025-09-07T23:57:07,289      96 | Constraint::Constraint (const Constraint& orig) :
2025-09-07T23:57:07,289         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:07,290   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-07T23:57:07,290   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:57:07,290     122 |   if (&rhs == NULL)
2025-09-07T23:57:07,290         |            ^
2025-09-07T23:57:07,290   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2025-09-07T23:57:07,290     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2025-09-07T23:57:07,291         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:07,315   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2025-09-07T23:57:07,315   ./base/sbml/Constraint.cpp:772:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:07,315     772 |   catch (SBMLConstructorException)
2025-09-07T23:57:07,315         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:07,316   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:57:07,316   ./base/sbml/Constraint.cpp:788:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:07,316     788 |   catch (SBMLConstructorException)
2025-09-07T23:57:07,316         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:07,784   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-07T23:57:07,784   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:07,785     101 |   if (&orig == NULL)
2025-09-07T23:57:07,785         |   ^~
2025-09-07T23:57:07,785   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-07T23:57:07,785   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:07,785     122 |   if (&rhs == NULL)
2025-09-07T23:57:07,785         |   ^~
2025-09-07T23:57:12,081   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:57:12,082                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:57:12,082                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:57:12,082                    from ./base/sbml/Delay.cpp:45:
2025-09-07T23:57:12,082   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:12,082      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:12,082         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:12,082   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:57:12,082                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:57:12,083                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:57:12,083                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:57:12,083                    from ./base/sbml/Delay.cpp:33:
2025-09-07T23:57:12,083   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:12,083     117 |     struct unary_function
2025-09-07T23:57:12,083         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:12,312   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-07T23:57:12,313   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:12,313     100 |   if (&orig == NULL)
2025-09-07T23:57:12,313         |             ^
2025-09-07T23:57:12,313   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2025-09-07T23:57:12,313      96 | Delay::Delay (const Delay& orig) :
2025-09-07T23:57:12,313         |               ~~~~~~~~~~~~~^~~~
2025-09-07T23:57:12,314   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-07T23:57:12,314   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:57:12,314     122 |   if (&rhs == NULL)
2025-09-07T23:57:12,314         |            ^
2025-09-07T23:57:12,315   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2025-09-07T23:57:12,315     120 | Delay& Delay::operator=(const Delay& rhs)
2025-09-07T23:57:12,315         |                         ~~~~~~~~~~~~~^~~
2025-09-07T23:57:12,331   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2025-09-07T23:57:12,331   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:12,331     648 |   catch (SBMLConstructorException)
2025-09-07T23:57:12,331         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:12,332   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:57:12,332   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:12,332     664 |   catch (SBMLConstructorException)
2025-09-07T23:57:12,332         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:12,760   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-07T23:57:12,760   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:12,761     100 |   if (&orig == NULL)
2025-09-07T23:57:12,761         |   ^~
2025-09-07T23:57:12,761   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-07T23:57:12,761   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:12,761     122 |   if (&rhs == NULL)
2025-09-07T23:57:12,761         |   ^~
2025-09-07T23:57:16,571   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:57:16,571                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:57:16,571                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:57:16,571                    from ./base/sbml/Event.cpp:44:
2025-09-07T23:57:16,572   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:16,572      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:16,572         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:16,572   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:57:16,572                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:57:16,572                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:57:16,572                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:57:16,572                    from ./base/sbml/Event.cpp:33:
2025-09-07T23:57:16,572   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:16,572     117 |     struct unary_function
2025-09-07T23:57:16,573         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:16,806   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-07T23:57:16,806   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:16,806     134 |   if (&orig == NULL)
2025-09-07T23:57:16,806         |             ^
2025-09-07T23:57:16,806   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2025-09-07T23:57:16,806     127 | Event::Event (const Event& orig) :
2025-09-07T23:57:16,806         |               ~~~~~~~~~~~~~^~~~
2025-09-07T23:57:16,809   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-07T23:57:16,809   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:57:16,809     171 |   if (&rhs == NULL)
2025-09-07T23:57:16,809         |            ^
2025-09-07T23:57:16,809   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2025-09-07T23:57:16,809     169 | Event& Event::operator=(const Event& rhs)
2025-09-07T23:57:16,809         |                         ~~~~~~~~~~~~~^~~
2025-09-07T23:57:16,824   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-07T23:57:16,825   ./base/sbml/Event.cpp:530:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:16,825     530 |   if (&(sid) == NULL)
2025-09-07T23:57:16,825         |              ^
2025-09-07T23:57:16,825   ./base/sbml/Event.cpp:519:34: note: ‘sid’ declared here
2025-09-07T23:57:16,825     519 | Event::setId (const std::string& sid)
2025-09-07T23:57:16,825         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:16,825   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-07T23:57:16,826   ./base/sbml/Event.cpp:556:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-07T23:57:16,826     556 |   if (&(name) == NULL)
2025-09-07T23:57:16,826         |               ^
2025-09-07T23:57:16,826   ./base/sbml/Event.cpp:551:36: note: ‘name’ declared here
2025-09-07T23:57:16,826     551 | Event::setName (const std::string& name)
2025-09-07T23:57:16,826         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:16,832   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-07T23:57:16,832   ./base/sbml/Event.cpp:704:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:16,832     704 |   if (&(sid) == NULL)
2025-09-07T23:57:16,832         |              ^
2025-09-07T23:57:16,832   ./base/sbml/Event.cpp:702:41: note: ‘sid’ declared here
2025-09-07T23:57:16,832     702 | Event::setTimeUnits (const std::string& sid)
2025-09-07T23:57:16,832         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:16,839   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-07T23:57:16,840   ./base/sbml/Event.cpp:1079:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-07T23:57:16,840    1079 |   return (&variable != NULL ) ?
2025-09-07T23:57:16,840         |                     ^
2025-09-07T23:57:16,840   ./base/sbml/Event.cpp:1077:47: note: ‘variable’ declared here
2025-09-07T23:57:16,840    1077 | Event::getEventAssignment (const std::string& variable) const
2025-09-07T23:57:16,840         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-07T23:57:16,840   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-07T23:57:16,840   ./base/sbml/Event.cpp:1091:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-07T23:57:16,841    1091 |   return (&variable != NULL ) ?
2025-09-07T23:57:16,841         |                     ^
2025-09-07T23:57:16,841   ./base/sbml/Event.cpp:1089:47: note: ‘variable’ declared here
2025-09-07T23:57:16,841    1089 | Event::getEventAssignment (const std::string& variable)
2025-09-07T23:57:16,841         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-07T23:57:16,841   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-07T23:57:16,841   ./base/sbml/Event.cpp:1124:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-07T23:57:16,841    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-07T23:57:16,842         |                     ^
2025-09-07T23:57:16,842   ./base/sbml/Event.cpp:1122:50: note: ‘variable’ declared here
2025-09-07T23:57:16,842    1122 | Event::removeEventAssignment (const std::string& variable)
2025-09-07T23:57:16,842         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-07T23:57:16,870   ./base/sbml/Event.cpp: At global scope:
2025-09-07T23:57:16,870   ./base/sbml/Event.cpp:1741:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:16,870    1741 | struct IdEqE : public unary_function<SBase*, bool>
2025-09-07T23:57:16,871         |                       ^~~~~~~~~~~~~~
2025-09-07T23:57:16,871   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:16,871     117 |     struct unary_function
2025-09-07T23:57:16,871         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:16,872   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-07T23:57:16,872   ./base/sbml/Event.cpp:1755:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:16,872    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-07T23:57:16,872         |                ^
2025-09-07T23:57:16,872   ./base/sbml/Event.cpp:1753:39: note: ‘sid’ declared here
2025-09-07T23:57:16,873    1753 | ListOfEvents::get (const std::string& sid)
2025-09-07T23:57:16,873         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:16,873   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-07T23:57:16,873   ./base/sbml/Event.cpp:1764:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:16,873    1764 |   if (&sid == NULL) return NULL;
2025-09-07T23:57:16,873         |            ^
2025-09-07T23:57:16,873   ./base/sbml/Event.cpp:1762:39: note: ‘sid’ declared here
2025-09-07T23:57:16,873    1762 | ListOfEvents::get (const std::string& sid) const
2025-09-07T23:57:16,873         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:16,877   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-07T23:57:16,878   ./base/sbml/Event.cpp:1787:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:16,878    1787 |   if (&(sid) != NULL)
2025-09-07T23:57:16,878         |              ^
2025-09-07T23:57:16,878   ./base/sbml/Event.cpp:1782:42: note: ‘sid’ declared here
2025-09-07T23:57:16,878    1782 | ListOfEvents::remove (const std::string& sid)
2025-09-07T23:57:16,878         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:16,883   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2025-09-07T23:57:16,883   ./base/sbml/Event.cpp:1866:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:16,883    1866 |   catch (SBMLConstructorException)
2025-09-07T23:57:16,883         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:16,884   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:57:16,884   ./base/sbml/Event.cpp:1882:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:16,884    1882 |   catch (SBMLConstructorException)
2025-09-07T23:57:16,884         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:17,405   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-07T23:57:17,406   ./base/sbml/Event.cpp:1755:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,406    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-07T23:57:17,406         |                         ^
2025-09-07T23:57:17,414   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-07T23:57:17,414   ./base/sbml/Event.cpp:1079:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,414    1079 |   return (&variable != NULL ) ?
2025-09-07T23:57:17,414         |                               ^
2025-09-07T23:57:17,414   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-07T23:57:17,414   ./base/sbml/Event.cpp:1091:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,414    1091 |   return (&variable != NULL ) ?
2025-09-07T23:57:17,414         |                               ^
2025-09-07T23:57:17,415   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-07T23:57:17,415   ./base/sbml/Event.cpp:1124:30: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,415    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-07T23:57:17,415         |                              ^
2025-09-07T23:57:17,425   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-07T23:57:17,425   ./base/sbml/Event.cpp:1764:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,425    1764 |   if (&sid == NULL) return NULL;
2025-09-07T23:57:17,425         |   ^~
2025-09-07T23:57:17,428   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-07T23:57:17,428   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,428     171 |   if (&rhs == NULL)
2025-09-07T23:57:17,428         |   ^~
2025-09-07T23:57:17,433   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-07T23:57:17,434   ./base/sbml/Event.cpp:530:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,434     530 |   if (&(sid) == NULL)
2025-09-07T23:57:17,434         |   ^~
2025-09-07T23:57:17,434   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-07T23:57:17,434   ./base/sbml/Event.cpp:556:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,434     556 |   if (&(name) == NULL)
2025-09-07T23:57:17,434         |   ^~
2025-09-07T23:57:17,434   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-07T23:57:17,435   ./base/sbml/Event.cpp:704:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,435     704 |   if (&(sid) == NULL)
2025-09-07T23:57:17,435         |   ^~
2025-09-07T23:57:17,442   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-07T23:57:17,442   ./base/sbml/Event.cpp:1787:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,442    1787 |   if (&(sid) != NULL)
2025-09-07T23:57:17,443         |   ^~
2025-09-07T23:57:17,445   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-07T23:57:17,445   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:17,445     134 |   if (&orig == NULL)
2025-09-07T23:57:17,445         |   ^~
2025-09-07T23:57:24,521   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:57:24,521                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:57:24,521                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:57:24,522                    from ./base/sbml/EventAssignment.cpp:44:
2025-09-07T23:57:24,522   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:24,522      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:24,522         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:24,522   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:57:24,522                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:57:24,522                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:57:24,522                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:57:24,522                    from ./base/sbml/EventAssignment.cpp:33:
2025-09-07T23:57:24,523   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:24,523     117 |     struct unary_function
2025-09-07T23:57:24,523         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:24,779   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-07T23:57:24,779   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:24,780     100 |   if (&orig == NULL)
2025-09-07T23:57:24,780         |             ^
2025-09-07T23:57:24,780   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2025-09-07T23:57:24,780      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2025-09-07T23:57:24,780         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:24,781   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-07T23:57:24,781   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:57:24,781     122 |   if (&rhs == NULL)
2025-09-07T23:57:24,781         |            ^
2025-09-07T23:57:24,782   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2025-09-07T23:57:24,782     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2025-09-07T23:57:24,782         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:24,784   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-07T23:57:24,784   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:24,784     219 |   if (&(sid) == NULL)
2025-09-07T23:57:24,784         |              ^
2025-09-07T23:57:24,785   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2025-09-07T23:57:24,785     217 | EventAssignment::setVariable (const std::string& sid)
2025-09-07T23:57:24,785         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:24,809   ./base/sbml/EventAssignment.cpp: At global scope:
2025-09-07T23:57:24,810   ./base/sbml/EventAssignment.cpp:846:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:24,810     846 | struct IdEqEA : public unary_function<SBase*, bool>
2025-09-07T23:57:24,810         |                        ^~~~~~~~~~~~~~
2025-09-07T23:57:24,810   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:24,810     117 |     struct unary_function
2025-09-07T23:57:24,810         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:24,813   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-07T23:57:24,813   ./base/sbml/EventAssignment.cpp:871:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:24,813     871 |   if (&(sid) == NULL)
2025-09-07T23:57:24,813         |              ^
2025-09-07T23:57:24,813   ./base/sbml/EventAssignment.cpp:867:49: note: ‘sid’ declared here
2025-09-07T23:57:24,813     867 | ListOfEventAssignments::get (const std::string& sid) const
2025-09-07T23:57:24,814         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:24,816   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-07T23:57:24,816   ./base/sbml/EventAssignment.cpp:899:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:24,817     899 |   if (&(sid) != NULL)
2025-09-07T23:57:24,817         |              ^
2025-09-07T23:57:24,817   ./base/sbml/EventAssignment.cpp:894:52: note: ‘sid’ declared here
2025-09-07T23:57:24,817     894 | ListOfEventAssignments::remove (const std::string& sid)
2025-09-07T23:57:24,817         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:24,822   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2025-09-07T23:57:24,822   ./base/sbml/EventAssignment.cpp:992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:24,823     992 |   catch (SBMLConstructorException)
2025-09-07T23:57:24,823         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:24,823   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:57:24,823   ./base/sbml/EventAssignment.cpp:1008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:24,823    1008 |   catch (SBMLConstructorException)
2025-09-07T23:57:24,823         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:25,323   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-07T23:57:25,323   ./base/sbml/EventAssignment.cpp:871:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:25,323     871 |   if (&(sid) == NULL)
2025-09-07T23:57:25,324         |   ^~
2025-09-07T23:57:25,326   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-07T23:57:25,326   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:25,327     100 |   if (&orig == NULL)
2025-09-07T23:57:25,327         |   ^~
2025-09-07T23:57:25,327   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-07T23:57:25,327   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:25,327     122 |   if (&rhs == NULL)
2025-09-07T23:57:25,327         |   ^~
2025-09-07T23:57:25,329   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-07T23:57:25,329   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:25,329     219 |   if (&(sid) == NULL)
2025-09-07T23:57:25,329         |   ^~
2025-09-07T23:57:25,339   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-07T23:57:25,339   ./base/sbml/EventAssignment.cpp:899:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:25,340     899 |   if (&(sid) != NULL)
2025-09-07T23:57:25,340         |   ^~
2025-09-07T23:57:33,030   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:57:33,030                    from ./base/sbml/FunctionDefinition.cpp:47:
2025-09-07T23:57:33,030   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:33,031      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:33,031         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:33,031   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:57:33,031                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:57:33,031                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:57:33,032                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:57:33,032                    from ./base/sbml/FunctionDefinition.cpp:35:
2025-09-07T23:57:33,032   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:33,032     117 |     struct unary_function
2025-09-07T23:57:33,032         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:33,313   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-07T23:57:33,313   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:33,313     102 |   if (&orig == NULL)
2025-09-07T23:57:33,313         |             ^
2025-09-07T23:57:33,313   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2025-09-07T23:57:33,314      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2025-09-07T23:57:33,314         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:33,315   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-07T23:57:33,315   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:57:33,315     125 |   if (&rhs == NULL)
2025-09-07T23:57:33,315         |            ^
2025-09-07T23:57:33,315   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2025-09-07T23:57:33,315     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2025-09-07T23:57:33,315         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:33,318   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-07T23:57:33,318   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:33,319     253 |   if (&(sid) == NULL)
2025-09-07T23:57:33,319         |              ^
2025-09-07T23:57:33,319   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2025-09-07T23:57:33,319     242 | FunctionDefinition::setId (const std::string& sid)
2025-09-07T23:57:33,319         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:33,319   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-07T23:57:33,319   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-07T23:57:33,319     278 |   if (&(name) == NULL)
2025-09-07T23:57:33,320         |               ^
2025-09-07T23:57:33,320   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2025-09-07T23:57:33,320     273 | FunctionDefinition::setName (const std::string& name)
2025-09-07T23:57:33,320         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:33,344   ./base/sbml/FunctionDefinition.cpp: At global scope:
2025-09-07T23:57:33,344   ./base/sbml/FunctionDefinition.cpp:994:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:33,345     994 | struct IdEqFD : public unary_function<SBase*, bool>
2025-09-07T23:57:33,345         |                        ^~~~~~~~~~~~~~
2025-09-07T23:57:33,345   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:33,345     117 |     struct unary_function
2025-09-07T23:57:33,345         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:33,348   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-07T23:57:33,348   ./base/sbml/FunctionDefinition.cpp:1019:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:33,348    1019 |   if (&(sid) == NULL)
2025-09-07T23:57:33,348         |              ^
2025-09-07T23:57:33,348   ./base/sbml/FunctionDefinition.cpp:1015:52: note: ‘sid’ declared here
2025-09-07T23:57:33,348    1015 | ListOfFunctionDefinitions::get (const std::string& sid) const
2025-09-07T23:57:33,348         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:33,351   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-07T23:57:33,351   ./base/sbml/FunctionDefinition.cpp:1047:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:33,352    1047 |   if (&(sid) != NULL)
2025-09-07T23:57:33,352         |              ^
2025-09-07T23:57:33,352   ./base/sbml/FunctionDefinition.cpp:1042:55: note: ‘sid’ declared here
2025-09-07T23:57:33,352    1042 | ListOfFunctionDefinitions::remove (const std::string& sid)
2025-09-07T23:57:33,352         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:33,356   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2025-09-07T23:57:33,357   ./base/sbml/FunctionDefinition.cpp:1124:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:33,357    1124 |   catch (SBMLConstructorException)
2025-09-07T23:57:33,357         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:33,357   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:57:33,357   ./base/sbml/FunctionDefinition.cpp:1140:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:33,358    1140 |   catch (SBMLConstructorException)
2025-09-07T23:57:33,358         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:33,861   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-07T23:57:33,861   ./base/sbml/FunctionDefinition.cpp:1019:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:33,861    1019 |   if (&(sid) == NULL)
2025-09-07T23:57:33,861         |   ^~
2025-09-07T23:57:33,864   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-07T23:57:33,864   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:33,864     102 |   if (&orig == NULL)
2025-09-07T23:57:33,864         |   ^~
2025-09-07T23:57:33,864   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-07T23:57:33,864   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:33,865     125 |   if (&rhs == NULL)
2025-09-07T23:57:33,865         |   ^~
2025-09-07T23:57:33,867   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-07T23:57:33,867   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:33,867     253 |   if (&(sid) == NULL)
2025-09-07T23:57:33,867         |   ^~
2025-09-07T23:57:33,867   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-07T23:57:33,867   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:33,868     278 |   if (&(name) == NULL)
2025-09-07T23:57:33,868         |   ^~
2025-09-07T23:57:33,875   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-07T23:57:33,875   ./base/sbml/FunctionDefinition.cpp:1047:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:33,876    1047 |   if (&(sid) != NULL)
2025-09-07T23:57:33,876         |   ^~
2025-09-07T23:57:39,374   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:57:39,375                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:57:39,375                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:57:39,375                    from ./base/sbml/InitialAssignment.cpp:43:
2025-09-07T23:57:39,375   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:39,375      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:39,375         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:39,375   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:57:39,375                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:57:39,376                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:57:39,376                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:57:39,376                    from ./base/sbml/InitialAssignment.cpp:33:
2025-09-07T23:57:39,376   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:39,376     117 |     struct unary_function
2025-09-07T23:57:39,376         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:39,607   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-07T23:57:39,607   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:39,607      97 |   if (&orig == NULL)
2025-09-07T23:57:39,607         |             ^
2025-09-07T23:57:39,607   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2025-09-07T23:57:39,607      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2025-09-07T23:57:39,608         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:39,608   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-07T23:57:39,609   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:57:39,609     119 |   if (&rhs == NULL)
2025-09-07T23:57:39,609         |            ^
2025-09-07T23:57:39,609   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2025-09-07T23:57:39,609     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2025-09-07T23:57:39,609         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:39,612   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-07T23:57:39,612   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:39,612     232 |   if (&(sid) == NULL)
2025-09-07T23:57:39,612         |              ^
2025-09-07T23:57:39,612   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2025-09-07T23:57:39,612     230 | InitialAssignment::setSymbol (const std::string& sid)
2025-09-07T23:57:39,612         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:39,637   ./base/sbml/InitialAssignment.cpp: At global scope:
2025-09-07T23:57:39,637   ./base/sbml/InitialAssignment.cpp:843:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:39,637     843 | struct IdEqIA : public unary_function<SBase*, bool>
2025-09-07T23:57:39,637         |                        ^~~~~~~~~~~~~~
2025-09-07T23:57:39,637   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:39,637     117 |     struct unary_function
2025-09-07T23:57:39,637         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:39,640   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-07T23:57:39,640   ./base/sbml/InitialAssignment.cpp:868:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:39,640     868 |   if (&(sid) == NULL)
2025-09-07T23:57:39,641         |              ^
2025-09-07T23:57:39,641   ./base/sbml/InitialAssignment.cpp:864:51: note: ‘sid’ declared here
2025-09-07T23:57:39,641     864 | ListOfInitialAssignments::get (const std::string& sid) const
2025-09-07T23:57:39,641         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:39,644   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-07T23:57:39,644   ./base/sbml/InitialAssignment.cpp:896:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:39,644     896 |   if (&(sid) != NULL)
2025-09-07T23:57:39,644         |              ^
2025-09-07T23:57:39,644   ./base/sbml/InitialAssignment.cpp:891:54: note: ‘sid’ declared here
2025-09-07T23:57:39,644     891 | ListOfInitialAssignments::remove (const std::string& sid)
2025-09-07T23:57:39,644         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:39,650   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2025-09-07T23:57:39,650   ./base/sbml/InitialAssignment.cpp:989:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:39,650     989 |   catch (SBMLConstructorException)
2025-09-07T23:57:39,650         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:39,650   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:57:39,651   ./base/sbml/InitialAssignment.cpp:1005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:39,651    1005 |   catch (SBMLConstructorException)
2025-09-07T23:57:39,651         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:40,150   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-07T23:57:40,150   ./base/sbml/InitialAssignment.cpp:868:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:40,150     868 |   if (&(sid) == NULL)
2025-09-07T23:57:40,150         |   ^~
2025-09-07T23:57:40,153   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-07T23:57:40,153   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:40,153      97 |   if (&orig == NULL)
2025-09-07T23:57:40,153         |   ^~
2025-09-07T23:57:40,153   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-07T23:57:40,154   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:40,154     119 |   if (&rhs == NULL)
2025-09-07T23:57:40,154         |   ^~
2025-09-07T23:57:40,156   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-07T23:57:40,156   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:40,157     232 |   if (&(sid) == NULL)
2025-09-07T23:57:40,157         |   ^~
2025-09-07T23:57:40,166   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-07T23:57:40,166   ./base/sbml/InitialAssignment.cpp:896:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:40,166     896 |   if (&(sid) != NULL)
2025-09-07T23:57:40,166         |   ^~
2025-09-07T23:57:45,653   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:57:45,653                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:57:45,653                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:57:45,653                    from ./base/sbml/KineticLaw.cpp:45:
2025-09-07T23:57:45,653   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:45,653      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:45,653         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:45,654   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:57:45,654                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:57:45,654                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:57:45,654                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:57:45,654                    from ./base/sbml/KineticLaw.cpp:33:
2025-09-07T23:57:45,654   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:45,654     117 |     struct unary_function
2025-09-07T23:57:45,654         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:45,892   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-07T23:57:45,892   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:45,892     117 |   if (&orig == NULL)
2025-09-07T23:57:45,893         |             ^
2025-09-07T23:57:45,893   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2025-09-07T23:57:45,893     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2025-09-07T23:57:45,893         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:45,895   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-07T23:57:45,895   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:57:45,895     143 |   if (&rhs == NULL)
2025-09-07T23:57:45,895         |            ^
2025-09-07T23:57:45,895   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2025-09-07T23:57:45,895     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2025-09-07T23:57:45,895         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:45,906   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-07T23:57:45,906   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-07T23:57:45,906     363 |   if (&(formula) == NULL)
2025-09-07T23:57:45,906         |                  ^
2025-09-07T23:57:45,906   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2025-09-07T23:57:45,906     361 | KineticLaw::setFormula (const std::string& formula)
2025-09-07T23:57:45,906         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-07T23:57:45,909   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-07T23:57:45,909   ./base/sbml/KineticLaw.cpp:435:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:45,909     435 |   if (&(sid) == NULL)
2025-09-07T23:57:45,909         |              ^
2025-09-07T23:57:45,909   ./base/sbml/KineticLaw.cpp:432:46: note: ‘sid’ declared here
2025-09-07T23:57:45,909     432 | KineticLaw::setTimeUnits (const std::string& sid)
2025-09-07T23:57:45,909         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:45,910   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-07T23:57:45,910   ./base/sbml/KineticLaw.cpp:463:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:45,910     463 |   if (&(sid) == NULL)
2025-09-07T23:57:45,910         |              ^
2025-09-07T23:57:45,910   ./base/sbml/KineticLaw.cpp:460:51: note: ‘sid’ declared here
2025-09-07T23:57:45,910     460 | KineticLaw::setSubstanceUnits (const std::string& sid)
2025-09-07T23:57:45,910         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:45,924   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-07T23:57:45,925   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:45,925    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-07T23:57:45,925         |                ^
2025-09-07T23:57:45,925   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2025-09-07T23:57:45,925    1032 | KineticLaw::removeParameter (const std::string& sid)
2025-09-07T23:57:45,925         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:45,925   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-07T23:57:45,925   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:45,926    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-07T23:57:45,926         |                ^
2025-09-07T23:57:45,926   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2025-09-07T23:57:45,926    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2025-09-07T23:57:45,926         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:45,951   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2025-09-07T23:57:45,951   ./base/sbml/KineticLaw.cpp:1611:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:45,952    1611 |   catch (SBMLConstructorException)
2025-09-07T23:57:45,952         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:45,952   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:57:45,952   ./base/sbml/KineticLaw.cpp:1627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:45,952    1627 |   catch (SBMLConstructorException)
2025-09-07T23:57:45,952         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:46,425   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-07T23:57:46,425   ./base/sbml/KineticLaw.cpp:1034:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:46,425    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-07T23:57:46,425         |                         ^
2025-09-07T23:57:46,426   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-07T23:57:46,426   ./base/sbml/KineticLaw.cpp:1045:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:46,426    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-07T23:57:46,426         |                         ^
2025-09-07T23:57:46,429   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-07T23:57:46,429   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:46,430     363 |   if (&(formula) == NULL)
2025-09-07T23:57:46,430         |   ^~
2025-09-07T23:57:46,434   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-07T23:57:46,435   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:46,435     143 |   if (&rhs == NULL)
2025-09-07T23:57:46,435         |   ^~
2025-09-07T23:57:46,438   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-07T23:57:46,438   ./base/sbml/KineticLaw.cpp:435:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:46,439     435 |   if (&(sid) == NULL)
2025-09-07T23:57:46,439         |   ^~
2025-09-07T23:57:46,439   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-07T23:57:46,439   ./base/sbml/KineticLaw.cpp:463:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:46,439     463 |   if (&(sid) == NULL)
2025-09-07T23:57:46,439         |   ^~
2025-09-07T23:57:46,445   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-07T23:57:46,445   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:46,446     117 |   if (&orig == NULL)
2025-09-07T23:57:46,446         |   ^~
2025-09-07T23:57:52,071   In file included from ./base/sbml/ListOf.cpp:37:
2025-09-07T23:57:52,072   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:52,072      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:52,072         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:52,072   In file included from /usr/include/c++/14/functional:49,
2025-09-07T23:57:52,072                    from ./base/sbml/ListOf.cpp:34:
2025-09-07T23:57:52,072   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:52,072     117 |     struct unary_function
2025-09-07T23:57:52,072         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:52,245   ./base/sbml/ListOf.cpp:76:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:52,245      76 | struct Delete : public unary_function<SBase*, void>
2025-09-07T23:57:52,245         |                        ^~~~~~~~~~~~~~
2025-09-07T23:57:52,245   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:52,245     117 |     struct unary_function
2025-09-07T23:57:52,245         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:52,247   ./base/sbml/ListOf.cpp:94:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:52,247      94 | struct Clone : public unary_function<SBase*, SBase*>
2025-09-07T23:57:52,248         |                       ^~~~~~~~~~~~~~
2025-09-07T23:57:52,248   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:52,248     117 |     struct unary_function
2025-09-07T23:57:52,248         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:52,265   ./base/sbml/ListOf.cpp:453:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:52,265     453 | struct SetSBMLDocument : public unary_function<SBase*, void>
2025-09-07T23:57:52,265         |                                 ^~~~~~~~~~~~~~
2025-09-07T23:57:52,265   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:52,265     117 |     struct unary_function
2025-09-07T23:57:52,265         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:52,266   ./base/sbml/ListOf.cpp:465:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:52,266     465 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2025-09-07T23:57:52,266         |                                     ^~~~~~~~~~~~~~
2025-09-07T23:57:52,266   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:52,266     117 |     struct unary_function
2025-09-07T23:57:52,266         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:52,268   ./base/sbml/ListOf.cpp:537:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:52,269     537 | struct Write : public unary_function<SBase*, void>
2025-09-07T23:57:52,269         |                       ^~~~~~~~~~~~~~
2025-09-07T23:57:52,269   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:52,269     117 |     struct unary_function
2025-09-07T23:57:52,269         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:56,982   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:57:56,983                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:57:56,983                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:57:56,983                    from ./base/sbml/LocalParameter.cpp:42:
2025-09-07T23:57:56,983   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:56,983      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:57:56,983         |                           ^~~~~~~~~~~~~~
2025-09-07T23:57:56,983   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:57:56,983                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:57:56,984                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:57:56,984                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:57:56,984                    from ./base/sbml/LocalParameter.cpp:35:
2025-09-07T23:57:56,984   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:56,984     117 |     struct unary_function
2025-09-07T23:57:56,984         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:57,213   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-07T23:57:57,213   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:57,213     103 |   if (&orig == NULL)
2025-09-07T23:57:57,213         |             ^
2025-09-07T23:57:57,213   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2025-09-07T23:57:57,213     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2025-09-07T23:57:57,213         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:57,214   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-07T23:57:57,214   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:57:57,214     116 |   if (&orig == NULL)
2025-09-07T23:57:57,214         |             ^
2025-09-07T23:57:57,214   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2025-09-07T23:57:57,215     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2025-09-07T23:57:57,215         |                                ~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:57:57,215   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-07T23:57:57,215   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:57:57,215     126 |   if (&rhs == NULL)
2025-09-07T23:57:57,215         |            ^
2025-09-07T23:57:57,216   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2025-09-07T23:57:57,216     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2025-09-07T23:57:57,216         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:57,222   ./base/sbml/LocalParameter.cpp: At global scope:
2025-09-07T23:57:57,222   ./base/sbml/LocalParameter.cpp:386:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:57:57,223     386 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-07T23:57:57,223         |                       ^~~~~~~~~~~~~~
2025-09-07T23:57:57,223   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:57:57,223     117 |     struct unary_function
2025-09-07T23:57:57,223         |            ^~~~~~~~~~~~~~
2025-09-07T23:57:57,226   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-07T23:57:57,226   ./base/sbml/LocalParameter.cpp:411:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:57,226     411 |   if (&(sid) == NULL)
2025-09-07T23:57:57,226         |              ^
2025-09-07T23:57:57,227   ./base/sbml/LocalParameter.cpp:407:48: note: ‘sid’ declared here
2025-09-07T23:57:57,227     407 | ListOfLocalParameters::get (const std::string& sid) const
2025-09-07T23:57:57,227         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:57,231   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-07T23:57:57,231   ./base/sbml/LocalParameter.cpp:453:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:57:57,231     453 |   if (&(sid) != NULL)
2025-09-07T23:57:57,231         |              ^
2025-09-07T23:57:57,231   ./base/sbml/LocalParameter.cpp:448:51: note: ‘sid’ declared here
2025-09-07T23:57:57,232     448 | ListOfLocalParameters::remove (const std::string& sid)
2025-09-07T23:57:57,232         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:57:57,237   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2025-09-07T23:57:57,237   ./base/sbml/LocalParameter.cpp:533:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:57,237     533 |   catch (SBMLConstructorException)
2025-09-07T23:57:57,237         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:57,238   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:57:57,238   ./base/sbml/LocalParameter.cpp:549:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:57:57,238     549 |   catch (SBMLConstructorException)
2025-09-07T23:57:57,238         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:57:57,723   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-07T23:57:57,723   ./base/sbml/LocalParameter.cpp:411:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:57,723     411 |   if (&(sid) == NULL)
2025-09-07T23:57:57,724         |   ^~
2025-09-07T23:57:57,726   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-07T23:57:57,726   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:57,726     103 |   if (&orig == NULL)
2025-09-07T23:57:57,726         |   ^~
2025-09-07T23:57:57,727   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-07T23:57:57,727   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:57,727     116 |   if (&orig == NULL)
2025-09-07T23:57:57,727         |   ^~
2025-09-07T23:57:57,728   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-07T23:57:57,728   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:57,728     126 |   if (&rhs == NULL)
2025-09-07T23:57:57,728         |   ^~
2025-09-07T23:57:57,736   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-07T23:57:57,736   ./base/sbml/LocalParameter.cpp:453:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:57:57,736     453 |   if (&(sid) != NULL)
2025-09-07T23:57:57,736         |   ^~
2025-09-07T23:58:01,978   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:58:01,978                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:58:01,978                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:58:01,978                    from ./base/sbml/Model.cpp:41:
2025-09-07T23:58:01,978   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:01,978      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:58:01,978         |                           ^~~~~~~~~~~~~~
2025-09-07T23:58:01,979   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:58:01,979                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:58:01,979                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:58:01,979                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:58:01,979                    from ./base/sbml/Model.cpp:33:
2025-09-07T23:58:01,980   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:01,980     117 |     struct unary_function
2025-09-07T23:58:01,980         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:02,302   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-07T23:58:02,302   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:58:02,302     175 |   if (&orig == NULL)
2025-09-07T23:58:02,302         |             ^
2025-09-07T23:58:02,303   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2025-09-07T23:58:02,303     160 | Model::Model(const Model& orig) :
2025-09-07T23:58:02,303         |              ~~~~~~~~~~~~~^~~~
2025-09-07T23:58:02,307   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-07T23:58:02,307   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:58:02,307     216 |   if (&rhs == NULL)
2025-09-07T23:58:02,307         |            ^
2025-09-07T23:58:02,307   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2025-09-07T23:58:02,308     214 | Model& Model::operator=(const Model& rhs)
2025-09-07T23:58:02,308         |                         ~~~~~~~~~~~~~^~~
2025-09-07T23:58:02,351   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-07T23:58:02,352   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:02,352     718 |   if (&(sid) == NULL)
2025-09-07T23:58:02,352         |              ^
2025-09-07T23:58:02,352   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2025-09-07T23:58:02,352     707 | Model::setId (const std::string& sid)
2025-09-07T23:58:02,352         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:02,353   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-07T23:58:02,354   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-07T23:58:02,354     743 |   if (&(name) == NULL)
2025-09-07T23:58:02,354         |               ^
2025-09-07T23:58:02,354   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2025-09-07T23:58:02,354     738 | Model::setName (const std::string& name)
2025-09-07T23:58:02,354         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:58:02,355   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-07T23:58:02,356   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-07T23:58:02,356     773 |   if (&(units) == NULL)
2025-09-07T23:58:02,356         |                ^
2025-09-07T23:58:02,356   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2025-09-07T23:58:02,356     771 | Model::setSubstanceUnits (const std::string& units)
2025-09-07T23:58:02,356         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-07T23:58:02,357   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-07T23:58:02,358   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-07T23:58:02,358     799 |   if (&(units) == NULL)
2025-09-07T23:58:02,358         |                ^
2025-09-07T23:58:02,358   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2025-09-07T23:58:02,358     797 | Model::setTimeUnits (const std::string& units)
2025-09-07T23:58:02,358         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-07T23:58:02,359   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-07T23:58:02,359   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-07T23:58:02,360     825 |   if (&(units) == NULL)
2025-09-07T23:58:02,360         |                ^
2025-09-07T23:58:02,360   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2025-09-07T23:58:02,360     823 | Model::setVolumeUnits (const std::string& units)
2025-09-07T23:58:02,360         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-07T23:58:02,361   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-07T23:58:02,361   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-07T23:58:02,361     851 |   if (&(units) == NULL)
2025-09-07T23:58:02,362         |                ^
2025-09-07T23:58:02,362   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2025-09-07T23:58:02,362     849 | Model::setAreaUnits (const std::string& units)
2025-09-07T23:58:02,362         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-07T23:58:02,363   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-07T23:58:02,363   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-07T23:58:02,363     877 |   if (&(units) == NULL)
2025-09-07T23:58:02,363         |                ^
2025-09-07T23:58:02,364   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2025-09-07T23:58:02,364     875 | Model::setLengthUnits (const std::string& units)
2025-09-07T23:58:02,364         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-07T23:58:02,365   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-07T23:58:02,365   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-07T23:58:02,365     903 |   if (&(units) == NULL)
2025-09-07T23:58:02,365         |                ^
2025-09-07T23:58:02,366   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2025-09-07T23:58:02,366     901 | Model::setExtentUnits (const std::string& units)
2025-09-07T23:58:02,366         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-07T23:58:02,367   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-07T23:58:02,367   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-07T23:58:02,367     929 |   if (&(id) == NULL)
2025-09-07T23:58:02,367         |             ^
2025-09-07T23:58:02,368   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2025-09-07T23:58:02,368     927 | Model::setConversionFactor (const std::string& id)
2025-09-07T23:58:02,368         |                             ~~~~~~~~~~~~~~~~~~~^~
2025-09-07T23:58:02,550   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2025-09-07T23:58:02,550   ./base/sbml/Model.cpp:6000:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:02,550    6000 |   catch (SBMLConstructorException)
2025-09-07T23:58:02,550         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:02,551   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:58:02,551   ./base/sbml/Model.cpp:6016:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:02,551    6016 |   catch (SBMLConstructorException)
2025-09-07T23:58:02,551         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:03,256   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-07T23:58:03,256   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,256     216 |   if (&rhs == NULL)
2025-09-07T23:58:03,256         |   ^~
2025-09-07T23:58:03,268   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-07T23:58:03,268   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,269     718 |   if (&(sid) == NULL)
2025-09-07T23:58:03,269         |   ^~
2025-09-07T23:58:03,269   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-07T23:58:03,269   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,269     743 |   if (&(name) == NULL)
2025-09-07T23:58:03,269         |   ^~
2025-09-07T23:58:03,270   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-07T23:58:03,270   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,270     773 |   if (&(units) == NULL)
2025-09-07T23:58:03,270         |   ^~
2025-09-07T23:58:03,271   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-07T23:58:03,271   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,271     799 |   if (&(units) == NULL)
2025-09-07T23:58:03,271         |   ^~
2025-09-07T23:58:03,272   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-07T23:58:03,272   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,272     825 |   if (&(units) == NULL)
2025-09-07T23:58:03,272         |   ^~
2025-09-07T23:58:03,273   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-07T23:58:03,273   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,273     851 |   if (&(units) == NULL)
2025-09-07T23:58:03,273         |   ^~
2025-09-07T23:58:03,274   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-07T23:58:03,274   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,274     877 |   if (&(units) == NULL)
2025-09-07T23:58:03,274         |   ^~
2025-09-07T23:58:03,275   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-07T23:58:03,275   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,275     903 |   if (&(units) == NULL)
2025-09-07T23:58:03,275         |   ^~
2025-09-07T23:58:03,276   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-07T23:58:03,276   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,276     929 |   if (&(id) == NULL)
2025-09-07T23:58:03,276         |   ^~
2025-09-07T23:58:03,311   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-07T23:58:03,311   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:03,311     175 |   if (&orig == NULL)
2025-09-07T23:58:03,311         |   ^~
2025-09-07T23:58:08,646   ./base/sbml/Model.cpp: In member function ‘void Model::populateListFormulaUnitsData()’:
2025-09-07T23:58:08,646   ./base/sbml/Model.cpp:5681:29: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
2025-09-07T23:58:08,646    5681 |       sprintf(newId, "event_%u", countEvents);
2025-09-07T23:58:08,646         |                             ^~
2025-09-07T23:58:08,646   ./base/sbml/Model.cpp:5681:22: note: directive argument in the range [0, 4294967294]
2025-09-07T23:58:08,646    5681 |       sprintf(newId, "event_%u", countEvents);
2025-09-07T23:58:08,646         |                      ^~~~~~~~~~
2025-09-07T23:58:08,647   ./base/sbml/Model.cpp:5681:14: note: ‘sprintf’ output between 8 and 17 bytes into a destination of size 12
2025-09-07T23:58:08,647    5681 |       sprintf(newId, "event_%u", countEvents);
2025-09-07T23:58:08,647         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:18,980   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:58:18,980                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:58:18,980                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:58:18,980                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2025-09-07T23:58:18,980   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:18,981      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:58:18,981         |                           ^~~~~~~~~~~~~~
2025-09-07T23:58:18,981   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:58:18,982                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:58:18,982                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:58:18,982                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:58:18,982                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2025-09-07T23:58:18,982   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:18,982     117 |     struct unary_function
2025-09-07T23:58:18,982         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:22,755   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:58:22,755                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:58:22,755                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:58:22,755                    from ./base/sbml/Parameter.cpp:42:
2025-09-07T23:58:22,755   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:22,755      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:58:22,755         |                           ^~~~~~~~~~~~~~
2025-09-07T23:58:22,756   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:58:22,756                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:58:22,756                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:58:22,756                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:58:22,756                    from ./base/sbml/Parameter.cpp:35:
2025-09-07T23:58:22,757   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:22,757     117 |     struct unary_function
2025-09-07T23:58:22,757         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:22,991   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-07T23:58:22,992   ./base/sbml/Parameter.cpp:131:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:58:22,992     131 |   if (&orig == NULL)
2025-09-07T23:58:22,992         |             ^
2025-09-07T23:58:22,992   ./base/sbml/Parameter.cpp:128:39: note: ‘orig’ declared here
2025-09-07T23:58:22,992     128 | Parameter::Parameter(const Parameter& orig) :
2025-09-07T23:58:22,992         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:58:22,994   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-07T23:58:22,994   ./base/sbml/Parameter.cpp:155:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:58:22,995     155 |   if (&rhs == NULL)
2025-09-07T23:58:22,995         |            ^
2025-09-07T23:58:22,995   ./base/sbml/Parameter.cpp:153:50: note: ‘rhs’ declared here
2025-09-07T23:58:22,995     153 | Parameter& Parameter::operator=(const Parameter& rhs)
2025-09-07T23:58:22,995         |                                 ~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:22,999   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-07T23:58:22,999   ./base/sbml/Parameter.cpp:342:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:23,000     342 |   if (&(sid) == NULL)
2025-09-07T23:58:23,000         |              ^
2025-09-07T23:58:23,000   ./base/sbml/Parameter.cpp:331:38: note: ‘sid’ declared here
2025-09-07T23:58:23,000     331 | Parameter::setId (const std::string& sid)
2025-09-07T23:58:23,000         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:23,001   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-07T23:58:23,001   ./base/sbml/Parameter.cpp:367:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-07T23:58:23,001     367 |   if (&(name) == NULL)
2025-09-07T23:58:23,001         |               ^
2025-09-07T23:58:23,002   ./base/sbml/Parameter.cpp:362:40: note: ‘name’ declared here
2025-09-07T23:58:23,002     362 | Parameter::setName (const std::string& name)
2025-09-07T23:58:23,002         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:58:23,003   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-07T23:58:23,004   ./base/sbml/Parameter.cpp:409:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-07T23:58:23,004     409 |   if (&(units) == NULL)
2025-09-07T23:58:23,004         |                ^
2025-09-07T23:58:23,004   ./base/sbml/Parameter.cpp:407:41: note: ‘units’ declared here
2025-09-07T23:58:23,004     407 | Parameter::setUnits (const std::string& units)
2025-09-07T23:58:23,004         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-07T23:58:23,058   ./base/sbml/Parameter.cpp: At global scope:
2025-09-07T23:58:23,058   ./base/sbml/Parameter.cpp:1523:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:23,058    1523 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-07T23:58:23,058         |                       ^~~~~~~~~~~~~~
2025-09-07T23:58:23,058   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:23,058     117 |     struct unary_function
2025-09-07T23:58:23,058         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:23,062   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-07T23:58:23,062   ./base/sbml/Parameter.cpp:1546:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:23,062    1546 |   if (&(sid) == NULL)
2025-09-07T23:58:23,062         |              ^
2025-09-07T23:58:23,063   ./base/sbml/Parameter.cpp:1542:43: note: ‘sid’ declared here
2025-09-07T23:58:23,063    1542 | ListOfParameters::get (const std::string& sid) const
2025-09-07T23:58:23,063         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:23,066   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-07T23:58:23,067   ./base/sbml/Parameter.cpp:1573:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:23,067    1573 |   if (&(sid) != NULL)
2025-09-07T23:58:23,067         |              ^
2025-09-07T23:58:23,067   ./base/sbml/Parameter.cpp:1568:46: note: ‘sid’ declared here
2025-09-07T23:58:23,067    1568 | ListOfParameters::remove (const std::string& sid)
2025-09-07T23:58:23,067         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:23,072   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2025-09-07T23:58:23,073   ./base/sbml/Parameter.cpp:1653:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:23,073    1653 |   catch (SBMLConstructorException)
2025-09-07T23:58:23,073         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:23,074   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:58:23,074   ./base/sbml/Parameter.cpp:1669:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:23,074    1669 |   catch (SBMLConstructorException)
2025-09-07T23:58:23,074         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:23,602   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-07T23:58:23,602   ./base/sbml/Parameter.cpp:1546:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:23,602    1546 |   if (&(sid) == NULL)
2025-09-07T23:58:23,602         |   ^~
2025-09-07T23:58:23,606   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-07T23:58:23,606   ./base/sbml/Parameter.cpp:131:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:23,606     131 |   if (&orig == NULL)
2025-09-07T23:58:23,606         |   ^~
2025-09-07T23:58:23,607   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-07T23:58:23,607   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:23,607     155 |   if (&rhs == NULL)
2025-09-07T23:58:23,607         |   ^~
2025-09-07T23:58:23,610   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-07T23:58:23,610   ./base/sbml/Parameter.cpp:342:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:23,610     342 |   if (&(sid) == NULL)
2025-09-07T23:58:23,610         |   ^~
2025-09-07T23:58:23,611   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-07T23:58:23,611   ./base/sbml/Parameter.cpp:367:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:23,611     367 |   if (&(name) == NULL)
2025-09-07T23:58:23,611         |   ^~
2025-09-07T23:58:23,611   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-07T23:58:23,612   ./base/sbml/Parameter.cpp:409:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:23,612     409 |   if (&(units) == NULL)
2025-09-07T23:58:23,612         |   ^~
2025-09-07T23:58:23,629   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-07T23:58:23,629   ./base/sbml/Parameter.cpp:1573:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:23,630    1573 |   if (&(sid) != NULL)
2025-09-07T23:58:23,630         |   ^~
2025-09-07T23:58:31,906   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:58:31,906                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:58:31,906                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:58:31,906                    from ./base/sbml/Priority.cpp:45:
2025-09-07T23:58:31,906   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:31,906      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:58:31,906         |                           ^~~~~~~~~~~~~~
2025-09-07T23:58:31,907   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:58:31,907                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:58:31,907                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:58:31,907                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:58:31,907                    from ./base/sbml/Priority.cpp:33:
2025-09-07T23:58:31,908   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:31,908     117 |     struct unary_function
2025-09-07T23:58:31,908         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:32,138   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-07T23:58:32,138   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:58:32,138     100 |   if (&orig == NULL)
2025-09-07T23:58:32,138         |             ^
2025-09-07T23:58:32,138   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2025-09-07T23:58:32,138      96 | Priority::Priority (const Priority& orig) :
2025-09-07T23:58:32,138         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:58:32,140   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-07T23:58:32,140   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:58:32,140     122 |   if (&rhs == NULL)
2025-09-07T23:58:32,141         |            ^
2025-09-07T23:58:32,141   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2025-09-07T23:58:32,141     120 | Priority& Priority::operator=(const Priority& rhs)
2025-09-07T23:58:32,141         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:32,155   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2025-09-07T23:58:32,155   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:32,155     503 |   catch (SBMLConstructorException)
2025-09-07T23:58:32,155         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:32,156   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:58:32,156   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:32,156     519 |   catch (SBMLConstructorException)
2025-09-07T23:58:32,156         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:32,584   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-07T23:58:32,585   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:32,585     100 |   if (&orig == NULL)
2025-09-07T23:58:32,585         |   ^~
2025-09-07T23:58:32,585   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-07T23:58:32,586   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:32,586     122 |   if (&rhs == NULL)
2025-09-07T23:58:32,586         |   ^~
2025-09-07T23:58:36,224   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:58:36,224                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:58:36,225                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:58:36,225                    from ./base/sbml/RateRule.cpp:49:
2025-09-07T23:58:36,225   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:36,225      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:58:36,225         |                           ^~~~~~~~~~~~~~
2025-09-07T23:58:36,225   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:58:36,225                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:58:36,225                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:58:36,225                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:58:36,226                    from ./base/sbml/RateRule.cpp:34:
2025-09-07T23:58:36,226   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:36,226     117 |     struct unary_function
2025-09-07T23:58:36,226         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:39,831   In file included from ./base//sbml/SpeciesReference.h:261,
2025-09-07T23:58:39,831                    from ./base/sbml/Reaction.cpp:40:
2025-09-07T23:58:39,831   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:39,831      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:58:39,832         |                           ^~~~~~~~~~~~~~
2025-09-07T23:58:39,832   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:58:39,832                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:58:39,832                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:58:39,832                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:58:39,832                    from ./base/sbml/Reaction.cpp:33:
2025-09-07T23:58:39,832   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:39,832     117 |     struct unary_function
2025-09-07T23:58:39,832         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:40,185   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-07T23:58:40,185   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:58:40,185     185 |   if (&orig == NULL)
2025-09-07T23:58:40,185         |             ^
2025-09-07T23:58:40,186   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2025-09-07T23:58:40,186     178 | Reaction::Reaction (const Reaction& orig) :
2025-09-07T23:58:40,186         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:58:40,188   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-07T23:58:40,189   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:58:40,189     215 |   if (&rhs == NULL)
2025-09-07T23:58:40,189         |            ^
2025-09-07T23:58:40,189   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2025-09-07T23:58:40,189     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2025-09-07T23:58:40,189         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:40,205   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-07T23:58:40,205   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:40,205     549 |   if (&(sid) == NULL)
2025-09-07T23:58:40,205         |              ^
2025-09-07T23:58:40,206   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2025-09-07T23:58:40,206     538 | Reaction::setId (const std::string& sid)
2025-09-07T23:58:40,206         |                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:40,207   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-07T23:58:40,207   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-07T23:58:40,207     574 |   if (&(name) == NULL)
2025-09-07T23:58:40,207         |               ^
2025-09-07T23:58:40,207   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2025-09-07T23:58:40,207     569 | Reaction::setName (const std::string& name)
2025-09-07T23:58:40,208         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:58:40,211   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-07T23:58:40,211   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:40,211     665 |   if (&(sid) == NULL)
2025-09-07T23:58:40,211         |              ^
2025-09-07T23:58:40,211   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2025-09-07T23:58:40,212     663 | Reaction::setCompartment (const std::string& sid)
2025-09-07T23:58:40,212         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:40,260   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-07T23:58:40,261   ./base/sbml/Reaction.cpp:1900:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:40,261    1900 |   if (&(sid) == NULL)
2025-09-07T23:58:40,261         |              ^
2025-09-07T23:58:40,261   ./base/sbml/Reaction.cpp:1896:42: note: ‘sid’ declared here
2025-09-07T23:58:40,261    1896 | ListOfReactions::get (const std::string& sid) const
2025-09-07T23:58:40,261         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:40,265   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-07T23:58:40,265   ./base/sbml/Reaction.cpp:1927:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:40,265    1927 |   if (&(sid) != NULL)
2025-09-07T23:58:40,266         |              ^
2025-09-07T23:58:40,266   ./base/sbml/Reaction.cpp:1922:45: note: ‘sid’ declared here
2025-09-07T23:58:40,266    1922 | ListOfReactions::remove (const std::string& sid)
2025-09-07T23:58:40,266         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:40,272   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2025-09-07T23:58:40,272   ./base/sbml/Reaction.cpp:2005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:40,272    2005 |   catch (SBMLConstructorException)
2025-09-07T23:58:40,272         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:40,274   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:58:40,274   ./base/sbml/Reaction.cpp:2021:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:40,274    2021 |   catch (SBMLConstructorException)
2025-09-07T23:58:40,274         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:40,839   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-07T23:58:40,839   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:40,839     215 |   if (&rhs == NULL)
2025-09-07T23:58:40,839         |   ^~
2025-09-07T23:58:40,845   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-07T23:58:40,845   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:40,845     549 |   if (&(sid) == NULL)
2025-09-07T23:58:40,845         |   ^~
2025-09-07T23:58:40,846   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-07T23:58:40,846   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:40,846     574 |   if (&(name) == NULL)
2025-09-07T23:58:40,846         |   ^~
2025-09-07T23:58:40,847   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-07T23:58:40,847   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:40,847     665 |   if (&(sid) == NULL)
2025-09-07T23:58:40,847         |   ^~
2025-09-07T23:58:40,851   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-07T23:58:40,851   ./base/sbml/Reaction.cpp:1900:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:40,851    1900 |   if (&(sid) == NULL)
2025-09-07T23:58:40,851         |   ^~
2025-09-07T23:58:40,859   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-07T23:58:40,859   ./base/sbml/Reaction.cpp:1927:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:40,859    1927 |   if (&(sid) != NULL)
2025-09-07T23:58:40,859         |   ^~
2025-09-07T23:58:40,862   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-07T23:58:40,863   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:40,863     185 |   if (&orig == NULL)
2025-09-07T23:58:40,863         |   ^~
2025-09-07T23:58:48,401   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:58:48,401                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:58:48,401                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:58:48,401                    from ./base/sbml/Rule.cpp:49:
2025-09-07T23:58:48,401   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:48,401      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:58:48,401         |                           ^~~~~~~~~~~~~~
2025-09-07T23:58:48,402   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:58:48,402                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:58:48,402                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-07T23:58:48,402                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-07T23:58:48,402                    from ./base/sbml/Rule.cpp:34:
2025-09-07T23:58:48,403   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:48,403     117 |     struct unary_function
2025-09-07T23:58:48,403         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:48,633   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-07T23:58:48,634   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:58:48,634     110 |   if (&orig == NULL)
2025-09-07T23:58:48,634         |             ^
2025-09-07T23:58:48,634   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2025-09-07T23:58:48,634     106 | Rule::Rule (const Rule& orig) :
2025-09-07T23:58:48,634         |             ~~~~~~~~~~~~^~~~
2025-09-07T23:58:48,637   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-07T23:58:48,637   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:58:48,637     137 |   if (&rhs == NULL)
2025-09-07T23:58:48,637         |            ^
2025-09-07T23:58:48,637   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2025-09-07T23:58:48,638     135 | Rule& Rule::operator=(const Rule& rhs)
2025-09-07T23:58:48,638         |                       ~~~~~~~~~~~~^~~
2025-09-07T23:58:48,644   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-07T23:58:48,644   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-07T23:58:48,644     326 |   if (&(formula) == NULL)
2025-09-07T23:58:48,644         |                  ^
2025-09-07T23:58:48,644   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2025-09-07T23:58:48,644     324 | Rule::setFormula (const std::string& formula)
2025-09-07T23:58:48,644         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-07T23:58:48,648   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-07T23:58:48,648   ./base/sbml/Rule.cpp:400:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:48,648     400 |   if (&(sid) == NULL)
2025-09-07T23:58:48,648         |              ^
2025-09-07T23:58:48,649   ./base/sbml/Rule.cpp:398:39: note: ‘sid’ declared here
2025-09-07T23:58:48,649     398 | Rule::setVariable (const std::string& sid)
2025-09-07T23:58:48,649         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:48,650   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-07T23:58:48,650   ./base/sbml/Rule.cpp:428:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2025-09-07T23:58:48,650     428 |   if (&(sname) == NULL)
2025-09-07T23:58:48,650         |                ^
2025-09-07T23:58:48,651   ./base/sbml/Rule.cpp:425:36: note: ‘sname’ declared here
2025-09-07T23:58:48,651     425 | Rule::setUnits (const std::string& sname)
2025-09-07T23:58:48,651         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-07T23:58:48,697   ./base/sbml/Rule.cpp: At global scope:
2025-09-07T23:58:48,697   ./base/sbml/Rule.cpp:1417:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:48,698    1417 | struct IdEqRule : public unary_function<SBase*, bool>
2025-09-07T23:58:48,698         |                          ^~~~~~~~~~~~~~
2025-09-07T23:58:48,698   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:48,698     117 |     struct unary_function
2025-09-07T23:58:48,698         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:48,702   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-07T23:58:48,702   ./base/sbml/Rule.cpp:1442:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:48,702    1442 |   if (&(sid) == NULL)
2025-09-07T23:58:48,702         |              ^
2025-09-07T23:58:48,702   ./base/sbml/Rule.cpp:1438:38: note: ‘sid’ declared here
2025-09-07T23:58:48,702    1438 | ListOfRules::get (const std::string& sid) const
2025-09-07T23:58:48,702         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:48,707   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-07T23:58:48,707   ./base/sbml/Rule.cpp:1483:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-07T23:58:48,707    1483 |   if (&(sid) != NULL)
2025-09-07T23:58:48,707         |              ^
2025-09-07T23:58:48,707   ./base/sbml/Rule.cpp:1478:41: note: ‘sid’ declared here
2025-09-07T23:58:48,707    1478 | ListOfRules::remove (const std::string& sid)
2025-09-07T23:58:48,708         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:58:48,722   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2025-09-07T23:58:48,723   ./base/sbml/Rule.cpp:1672:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:48,723    1672 |   catch (SBMLConstructorException)
2025-09-07T23:58:48,723         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:48,724   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:58:48,724   ./base/sbml/Rule.cpp:1688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:48,724    1688 |   catch (SBMLConstructorException)
2025-09-07T23:58:48,724         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:48,725   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2025-09-07T23:58:48,725   ./base/sbml/Rule.cpp:1704:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:48,726    1704 |   catch (SBMLConstructorException)
2025-09-07T23:58:48,726         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:48,727   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:58:48,727   ./base/sbml/Rule.cpp:1720:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:48,727    1720 |   catch (SBMLConstructorException)
2025-09-07T23:58:48,727         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:48,728   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2025-09-07T23:58:48,728   ./base/sbml/Rule.cpp:1736:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:48,728    1736 |   catch (SBMLConstructorException)
2025-09-07T23:58:48,728         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:48,729   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2025-09-07T23:58:48,730   ./base/sbml/Rule.cpp:1752:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:58:48,730    1752 |   catch (SBMLConstructorException)
2025-09-07T23:58:48,730         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:58:49,253   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-07T23:58:49,253   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:49,253     326 |   if (&(formula) == NULL)
2025-09-07T23:58:49,253         |   ^~
2025-09-07T23:58:49,260   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-07T23:58:49,260   ./base/sbml/Rule.cpp:1442:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:49,260    1442 |   if (&(sid) == NULL)
2025-09-07T23:58:49,260         |   ^~
2025-09-07T23:58:49,265   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-07T23:58:49,265   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:49,265     110 |   if (&orig == NULL)
2025-09-07T23:58:49,265         |   ^~
2025-09-07T23:58:49,266   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-07T23:58:49,266   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:49,267     137 |   if (&rhs == NULL)
2025-09-07T23:58:49,267         |   ^~
2025-09-07T23:58:49,269   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-07T23:58:49,270   ./base/sbml/Rule.cpp:400:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:49,270     400 |   if (&(sid) == NULL)
2025-09-07T23:58:49,270         |   ^~
2025-09-07T23:58:49,271   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-07T23:58:49,271   ./base/sbml/Rule.cpp:428:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:49,271     428 |   if (&(sname) == NULL)
2025-09-07T23:58:49,271         |   ^~
2025-09-07T23:58:49,283   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-07T23:58:49,283   ./base/sbml/Rule.cpp:1483:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:58:49,283    1483 |   if (&(sid) != NULL)
2025-09-07T23:58:49,283         |   ^~
2025-09-07T23:58:59,382   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:58:59,382                    from ./base//sbml/Model.h:426,
2025-09-07T23:58:59,382                    from ./base/sbml/SBMLConvert.cpp:37:
2025-09-07T23:58:59,382   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:58:59,382      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:58:59,382         |                           ^~~~~~~~~~~~~~
2025-09-07T23:58:59,382   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:58:59,383                    from ./base//sbml/xml/XMLError.h:556,
2025-09-07T23:58:59,383                    from ./base//sbml/SBMLError.h:447,
2025-09-07T23:58:59,383                    from ./base//sbml/math/ASTBase.h:44,
2025-09-07T23:58:59,383                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-07T23:58:59,383                    from ./base//sbml/math/ASTNode.h:147,
2025-09-07T23:58:59,383                    from ./base/sbml/SBMLConvert.cpp:34:
2025-09-07T23:58:59,383   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:58:59,383     117 |     struct unary_function
2025-09-07T23:58:59,383         |            ^~~~~~~~~~~~~~
2025-09-07T23:58:59,581   ./base/sbml/SBMLConvert.cpp: In member function ‘void Model::addDefinitionsForDefaultUnits()’:
2025-09-07T23:58:59,581   ./base/sbml/SBMLConvert.cpp:416:8: warning: variable ‘implicitArea’ set but not used [-Wunused-but-set-variable]
2025-09-07T23:58:59,581     416 |   bool implicitArea = false;
2025-09-07T23:58:59,581         |        ^~~~~~~~~~~~
2025-09-07T23:59:07,253   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:59:07,253                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:59:07,253                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:59:07,253                    from ./base//sbml/SBMLTypes.h:39,
2025-09-07T23:59:07,253                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-07T23:59:07,253                    from ./base//sbml/validator/SBMLInternalValidator.h:64,
2025-09-07T23:59:07,253                    from ./base/sbml/SBMLDocument.cpp:44:
2025-09-07T23:59:07,253   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:07,253      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:59:07,253         |                           ^~~~~~~~~~~~~~
2025-09-07T23:59:07,254   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:59:07,254                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-07T23:59:07,254                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-07T23:59:07,255                    from /usr/include/c++/14/ios:44,
2025-09-07T23:59:07,255                    from /usr/include/c++/14/ostream:40,
2025-09-07T23:59:07,255                    from /usr/include/c++/14/iostream:41,
2025-09-07T23:59:07,255                    from ./base/sbml/SBMLDocument.cpp:35:
2025-09-07T23:59:07,255   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:07,255     117 |     struct unary_function
2025-09-07T23:59:07,255         |            ^~~~~~~~~~~~~~
2025-09-07T23:59:07,605   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-07T23:59:07,605   ./base/sbml/SBMLDocument.cpp:261:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:59:07,605     261 |   if (&orig == NULL)
2025-09-07T23:59:07,605         |             ^
2025-09-07T23:59:07,605   ./base/sbml/SBMLDocument.cpp:256:49: note: ‘orig’ declared here
2025-09-07T23:59:07,605     256 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2025-09-07T23:59:07,605         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:59:07,608   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-07T23:59:07,608   ./base/sbml/SBMLDocument.cpp:302:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:59:07,608     302 |   if (&rhs == NULL)
2025-09-07T23:59:07,608         |            ^
2025-09-07T23:59:07,609   ./base/sbml/SBMLDocument.cpp:300:59: note: ‘rhs’ declared here
2025-09-07T23:59:07,609     300 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2025-09-07T23:59:07,609         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:59:07,725   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2025-09-07T23:59:07,725   ./base/sbml/SBMLDocument.cpp:1868:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:59:07,725    1868 |   catch (SBMLConstructorException)
2025-09-07T23:59:07,725         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:59:07,726   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2025-09-07T23:59:07,727   ./base/sbml/SBMLDocument.cpp:1884:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:59:07,727    1884 |   catch (SBMLConstructorException)
2025-09-07T23:59:07,727         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:59:07,728   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2025-09-07T23:59:07,728   ./base/sbml/SBMLDocument.cpp:1900:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-07T23:59:07,728    1900 |   catch (SBMLConstructorException)
2025-09-07T23:59:07,728         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-07T23:59:08,404   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-07T23:59:08,405   ./base/sbml/SBMLDocument.cpp:302:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:59:08,405     302 |   if (&rhs == NULL)
2025-09-07T23:59:08,405         |   ^~
2025-09-07T23:59:08,433   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-07T23:59:08,433   ./base/sbml/SBMLDocument.cpp:261:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:59:08,433     261 |   if (&orig == NULL)
2025-09-07T23:59:08,433         |   ^~
2025-09-07T23:59:17,121   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:59:17,121                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:59:17,121                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:59:17,121                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-07T23:59:17,121                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-07T23:59:17,122                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-07T23:59:17,122                    from ./base/sbml/SBMLError.cpp:41:
2025-09-07T23:59:17,122   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:17,122      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:59:17,122         |                           ^~~~~~~~~~~~~~
2025-09-07T23:59:17,123   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:59:17,123                    from ./base/sbml/SBMLError.cpp:33:
2025-09-07T23:59:17,123   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:17,123     117 |     struct unary_function
2025-09-07T23:59:17,123         |            ^~~~~~~~~~~~~~
2025-09-07T23:59:21,647   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:21,647      86 | struct Delete : public unary_function<XMLError*, void>
2025-09-07T23:59:21,647         |                        ^~~~~~~~~~~~~~
2025-09-07T23:59:21,648   In file included from /usr/include/c++/14/functional:49,
2025-09-07T23:59:21,648                    from ./base/sbml/SBMLErrorLog.cpp:34:
2025-09-07T23:59:21,648   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:21,648     117 |     struct unary_function
2025-09-07T23:59:21,648         |            ^~~~~~~~~~~~~~
2025-09-07T23:59:25,169   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:59:25,170                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:59:25,170                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:59:25,170                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-07T23:59:25,170                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-07T23:59:25,170                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-07T23:59:25,170                    from ./base/sbml/SBMLNamespaces.cpp:35:
2025-09-07T23:59:25,170   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:25,170      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:59:25,170         |                           ^~~~~~~~~~~~~~
2025-09-07T23:59:25,171   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:59:25,171                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-07T23:59:25,171                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-07T23:59:25,171                    from ./base/sbml/SBMLNamespaces.cpp:34:
2025-09-07T23:59:25,171   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:25,171     117 |     struct unary_function
2025-09-07T23:59:25,171         |            ^~~~~~~~~~~~~~
2025-09-07T23:59:25,467   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-07T23:59:25,467   ./base/sbml/SBMLNamespaces.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-07T23:59:25,467     175 |   if (&orig == NULL)
2025-09-07T23:59:25,467         |             ^
2025-09-07T23:59:25,467   ./base/sbml/SBMLNamespaces.cpp:173:54: note: ‘orig’ declared here
2025-09-07T23:59:25,468     173 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2025-09-07T23:59:25,468         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:59:25,471   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-07T23:59:25,472   ./base/sbml/SBMLNamespaces.cpp:225:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-07T23:59:25,472     225 |   if (&rhs == NULL)
2025-09-07T23:59:25,472         |            ^
2025-09-07T23:59:25,472   ./base/sbml/SBMLNamespaces.cpp:223:49: note: ‘rhs’ declared here
2025-09-07T23:59:25,472     223 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2025-09-07T23:59:25,472         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:59:25,948   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-07T23:59:25,948   ./base/sbml/SBMLNamespaces.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:59:25,948     175 |   if (&orig == NULL)
2025-09-07T23:59:25,948         |   ^~
2025-09-07T23:59:25,949   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-07T23:59:25,949   ./base/sbml/SBMLNamespaces.cpp:225:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:59:25,949     225 |   if (&rhs == NULL)
2025-09-07T23:59:25,950         |   ^~
2025-09-07T23:59:30,750   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:59:30,750                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:59:30,750                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:59:30,750                    from ./base/sbml/SBMLReader.cpp:39:
2025-09-07T23:59:30,750   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:30,750      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:59:30,751         |                           ^~~~~~~~~~~~~~
2025-09-07T23:59:30,751   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:59:30,751                    from ./base//sbml/xml/XMLError.h:556,
2025-09-07T23:59:30,751                    from ./base/sbml/SBMLReader.cpp:33:
2025-09-07T23:59:30,752   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:30,752     117 |     struct unary_function
2025-09-07T23:59:30,752         |            ^~~~~~~~~~~~~~
2025-09-07T23:59:30,982   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2025-09-07T23:59:30,983   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2025-09-07T23:59:30,983     139 |   if (&xml == NULL) return NULL;
2025-09-07T23:59:30,983         |            ^
2025-09-07T23:59:30,983   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2025-09-07T23:59:30,983     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2025-09-07T23:59:30,983         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-07T23:59:31,426   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:59:31,426     139 |   if (&xml == NULL) return NULL;
2025-09-07T23:59:31,426         |   ^~
2025-09-07T23:59:35,133   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:59:35,134                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:59:35,134                    from ./base/sbml/SBMLTransforms.cpp:33:
2025-09-07T23:59:35,134   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:35,134      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:59:35,134         |                           ^~~~~~~~~~~~~~
2025-09-07T23:59:35,135   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:59:35,135                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-07T23:59:35,135                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-07T23:59:35,135                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-07T23:59:35,135                    from ./base//sbml/SBase.h:146,
2025-09-07T23:59:35,135                    from ./base//sbml/SBMLTransforms.h:45:
2025-09-07T23:59:35,135   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:35,135     117 |     struct unary_function
2025-09-07T23:59:35,135         |            ^~~~~~~~~~~~~~
2025-09-07T23:59:43,362   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:59:43,363                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:59:43,363                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:59:43,363                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-07T23:59:43,363                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-07T23:59:43,363                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2025-09-07T23:59:43,363   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:43,363      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:59:43,363         |                           ^~~~~~~~~~~~~~
2025-09-07T23:59:43,364   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:59:43,364                    from ./base//sbml/xml/XMLError.h:556,
2025-09-07T23:59:43,364                    from ./base//sbml/SBMLError.h:447,
2025-09-07T23:59:43,364                    from ./base//sbml/SBMLDocument.h:289:
2025-09-07T23:59:43,365   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:43,365     117 |     struct unary_function
2025-09-07T23:59:43,365         |            ^~~~~~~~~~~~~~
2025-09-07T23:59:47,099   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:59:47,099                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:59:47,099                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:59:47,099                    from ./base/sbml/SBMLVisitor.cpp:34:
2025-09-07T23:59:47,099   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:47,099      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:59:47,099         |                           ^~~~~~~~~~~~~~
2025-09-07T23:59:47,100   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:59:47,100                    from ./base//sbml/xml/XMLError.h:556,
2025-09-07T23:59:47,100                    from ./base//sbml/SBMLError.h:447,
2025-09-07T23:59:47,101                    from ./base//sbml/SBMLDocument.h:289:
2025-09-07T23:59:47,101   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:47,101     117 |     struct unary_function
2025-09-07T23:59:47,101         |            ^~~~~~~~~~~~~~
2025-09-07T23:59:50,775   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-07T23:59:50,775                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-07T23:59:50,775                    from ./base//sbml/SBMLDocument.h:292,
2025-09-07T23:59:50,775                    from ./base/sbml/SBMLWriter.cpp:42:
2025-09-07T23:59:50,775   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:50,775      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-07T23:59:50,775         |                           ^~~~~~~~~~~~~~
2025-09-07T23:59:50,776   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:59:50,776                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-07T23:59:50,776                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-07T23:59:50,777                    from /usr/include/c++/14/ios:44,
2025-09-07T23:59:50,777                    from ./base/sbml/SBMLWriter.cpp:33:
2025-09-07T23:59:50,777   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:50,777     117 |     struct unary_function
2025-09-07T23:59:50,777         |            ^~~~~~~~~~~~~~
2025-09-07T23:59:51,008   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-07T23:59:51,009   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-07T23:59:51,009      85 |   if (&(name) == NULL)
2025-09-07T23:59:51,009         |               ^
2025-09-07T23:59:51,009   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2025-09-07T23:59:51,009      83 | SBMLWriter::setProgramName (const std::string& name)
2025-09-07T23:59:51,009         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-07T23:59:51,010   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-07T23:59:51,010   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2025-09-07T23:59:51,010     109 |   if (&(version) == NULL)
2025-09-07T23:59:51,010         |                  ^
2025-09-07T23:59:51,011   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2025-09-07T23:59:51,011     107 | SBMLWriter::setProgramVersion (const std::string& version)
2025-09-07T23:59:51,011         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-07T23:59:51,486   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-07T23:59:51,486   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:59:51,486      85 |   if (&(name) == NULL)
2025-09-07T23:59:51,486         |   ^~
2025-09-07T23:59:51,487   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-07T23:59:51,487   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2025-09-07T23:59:51,487     109 |   if (&(version) == NULL)
2025-09-07T23:59:51,487         |   ^~
2025-09-07T23:59:54,901   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-07T23:59:54,901     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2025-09-07T23:59:54,902         |                           ^~~~~~~~~~~~~~
2025-09-07T23:59:54,902   In file included from /usr/include/c++/14/string:49,
2025-09-07T23:59:54,902                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-07T23:59:54,902                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-07T23:59:54,902                    from /usr/include/c++/14/iomanip:42,
2025-09-07T23:59:54,902                    from ./base/sbml/SBO.cpp:33:
2025-09-07T23:59:54,902   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-07T23:59:54,902     117 |     struct unary_function
2025-09-07T23:59:54,902         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:03,024   In file included from ./base//sbml/Parameter.h:169,
2025-09-08T00:00:03,025                    from ./base//sbml/KineticLaw.h:169,
2025-09-08T00:00:03,025                    from ./base/sbml/SBase.cpp:46:
2025-09-08T00:00:03,025   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:03,025      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:00:03,025         |                           ^~~~~~~~~~~~~~
2025-09-08T00:00:03,025   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:00:03,025                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:00:03,026                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:00:03,026                    from /usr/include/c++/14/ios:44,
2025-09-08T00:00:03,026                    from /usr/include/c++/14/istream:40,
2025-09-08T00:00:03,026                    from /usr/include/c++/14/sstream:40,
2025-09-08T00:00:03,026                    from ./base/sbml/SBase.cpp:33:
2025-09-08T00:00:03,026   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:03,026     117 |     struct unary_function
2025-09-08T00:00:03,026         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:03,507   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:03,507      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2025-09-08T00:00:03,507         |                                    ^~~~~~~~~~~~~~
2025-09-08T00:00:03,508   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:03,508     117 |     struct unary_function
2025-09-08T00:00:03,508         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:03,508   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:03,508      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2025-09-08T00:00:03,508         |                                   ^~~~~~~~~~~~~~
2025-09-08T00:00:03,508   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:03,508     117 |     struct unary_function
2025-09-08T00:00:03,509         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:03,525   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T00:00:03,525   ./base/sbml/SBase.cpp:380:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:00:03,526     380 |   if (&orig == NULL)
2025-09-08T00:00:03,526         |             ^
2025-09-08T00:00:03,526   ./base/sbml/SBase.cpp:378:27: note: ‘orig’ declared here
2025-09-08T00:00:03,526     378 | SBase::SBase(const SBase& orig)
2025-09-08T00:00:03,526         |              ~~~~~~~~~~~~~^~~~
2025-09-08T00:00:03,535   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T00:00:03,535   ./base/sbml/SBase.cpp:492:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:00:03,535     492 |   if (&rhs == NULL)
2025-09-08T00:00:03,535         |            ^
2025-09-08T00:00:03,535   ./base/sbml/SBase.cpp:490:38: note: ‘rhs’ declared here
2025-09-08T00:00:03,536     490 | SBase& SBase::operator=(const SBase& rhs)
2025-09-08T00:00:03,536         |                         ~~~~~~~~~~~~~^~~
2025-09-08T00:00:03,553   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T00:00:03,553   ./base/sbml/SBase.cpp:1161:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T00:00:03,554    1161 |   if (&(metaid) == NULL)
2025-09-08T00:00:03,554         |                 ^
2025-09-08T00:00:03,554   ./base/sbml/SBase.cpp:1159:38: note: ‘metaid’ declared here
2025-09-08T00:00:03,554    1159 | SBase::setMetaId (const std::string& metaid)
2025-09-08T00:00:03,554         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:00:03,560   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T00:00:03,560   ./base/sbml/SBase.cpp:1346:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2025-09-08T00:00:03,560    1346 |   if (&(annotation) == NULL)
2025-09-08T00:00:03,560         |                     ^
2025-09-08T00:00:03,561   ./base/sbml/SBase.cpp:1344:42: note: ‘annotation’ declared here
2025-09-08T00:00:03,561    1344 | SBase::setAnnotation (const std::string& annotation)
2025-09-08T00:00:03,561         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:00:03,575   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T00:00:03,576   ./base/sbml/SBase.cpp:1716:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2025-09-08T00:00:03,576    1716 |   if (&(notes) == NULL)
2025-09-08T00:00:03,576         |                ^
2025-09-08T00:00:03,576   ./base/sbml/SBase.cpp:1713:36: note: ‘notes’ declared here
2025-09-08T00:00:03,576    1713 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2025-09-08T00:00:03,576         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:00:03,607   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T00:00:03,607   ./base/sbml/SBase.cpp:2366:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2025-09-08T00:00:03,607    2366 |   if (&(sboid) == NULL)
2025-09-08T00:00:03,607         |                ^
2025-09-08T00:00:03,607   ./base/sbml/SBase.cpp:2364:39: note: ‘sboid’ declared here
2025-09-08T00:00:03,608    2364 | SBase::setSBOTerm (const std::string &sboid)
2025-09-08T00:00:03,608         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:00:03,654   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2025-09-08T00:00:03,654   ./base/sbml/SBase.cpp:3605:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2025-09-08T00:00:03,654    3605 |   if (&pkgName == NULL)
2025-09-08T00:00:03,654         |                ^
2025-09-08T00:00:03,654   ./base/sbml/SBase.cpp:3604:22: note: ‘pkgName’ declared here
2025-09-08T00:00:03,655    3604 |   const std::string& pkgName = getPackageName();
2025-09-08T00:00:03,655         |                      ^~~~~~~
2025-09-08T00:00:03,819   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T00:00:03,819   ./base/sbml/SBase.cpp:5925:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:00:03,819    5925 |   if (&node == NULL) return;
2025-09-08T00:00:03,819         |             ^
2025-09-08T00:00:03,820   ./base/sbml/SBase.cpp:5923:22: note: ‘node’ declared here
2025-09-08T00:00:03,820    5923 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2025-09-08T00:00:03,820         |             ~~~~~~~~~^~~~
2025-09-08T00:00:04,516   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T00:00:04,517   ./base/sbml/SBase.cpp:2366:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:04,517    2366 |   if (&(sboid) == NULL)
2025-09-08T00:00:04,517         |   ^~
2025-09-08T00:00:04,524   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T00:00:04,524   ./base/sbml/SBase.cpp:1346:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:04,524    1346 |   if (&(annotation) == NULL)
2025-09-08T00:00:04,524         |   ^~
2025-09-08T00:00:04,542   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T00:00:04,543   ./base/sbml/SBase.cpp:1161:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:04,543    1161 |   if (&(metaid) == NULL)
2025-09-08T00:00:04,543         |   ^~
2025-09-08T00:00:04,591   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T00:00:04,591   ./base/sbml/SBase.cpp:492:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:04,591     492 |   if (&rhs == NULL)
2025-09-08T00:00:04,591         |   ^~
2025-09-08T00:00:04,596   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T00:00:04,596   ./base/sbml/SBase.cpp:380:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:04,596     380 |   if (&orig == NULL)
2025-09-08T00:00:04,597         |   ^~
2025-09-08T00:00:04,607   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T00:00:04,608   ./base/sbml/SBase.cpp:1716:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:04,608    1716 |   if (&(notes) == NULL)
2025-09-08T00:00:04,608         |   ^~
2025-09-08T00:00:04,613   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T00:00:04,613   ./base/sbml/SBase.cpp:5925:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:04,613    5925 |   if (&node == NULL) return;
2025-09-08T00:00:04,613         |   ^~
2025-09-08T00:00:21,392   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:00:21,392                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:00:21,392                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:00:21,392                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2025-09-08T00:00:21,392   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:21,393      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:00:21,393         |                           ^~~~~~~~~~~~~~
2025-09-08T00:00:21,393   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:00:21,393                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:00:21,393                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:00:21,393                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:00:21,393                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2025-09-08T00:00:21,393   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:21,393     117 |     struct unary_function
2025-09-08T00:00:21,394         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:21,642   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T00:00:21,642   ./base/sbml/SimpleSpeciesReference.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:00:21,642      97 |   if (&orig == NULL)
2025-09-08T00:00:21,642         |             ^
2025-09-08T00:00:21,642   ./base/sbml/SimpleSpeciesReference.cpp:94:78: note: ‘orig’ declared here
2025-09-08T00:00:21,642      94 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2025-09-08T00:00:21,642         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:00:21,643   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T00:00:21,643   ./base/sbml/SimpleSpeciesReference.cpp:115:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:00:21,644     115 |   if (&rhs == NULL)
2025-09-08T00:00:21,644         |            ^
2025-09-08T00:00:21,644   ./base/sbml/SimpleSpeciesReference.cpp:113:89: note: ‘rhs’ declared here
2025-09-08T00:00:21,644     113 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2025-09-08T00:00:21,644         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:21,646   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T00:00:21,647   ./base/sbml/SimpleSpeciesReference.cpp:215:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:21,647     215 |   if (&(sid) == NULL)
2025-09-08T00:00:21,647         |              ^
2025-09-08T00:00:21,647   ./base/sbml/SimpleSpeciesReference.cpp:213:56: note: ‘sid’ declared here
2025-09-08T00:00:21,647     213 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2025-09-08T00:00:21,647         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:21,647   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T00:00:21,647   ./base/sbml/SimpleSpeciesReference.cpp:237:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:21,648     237 |   if (&(sid) == NULL)
2025-09-08T00:00:21,648         |              ^
2025-09-08T00:00:21,648   ./base/sbml/SimpleSpeciesReference.cpp:235:51: note: ‘sid’ declared here
2025-09-08T00:00:21,648     235 | SimpleSpeciesReference::setId (const std::string& sid)
2025-09-08T00:00:21,648         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:21,652   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T00:00:21,652   ./base/sbml/SimpleSpeciesReference.cpp:301:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:00:21,652     301 |   if (&(name) == NULL)
2025-09-08T00:00:21,652         |               ^
2025-09-08T00:00:21,652   ./base/sbml/SimpleSpeciesReference.cpp:299:53: note: ‘name’ declared here
2025-09-08T00:00:21,652     299 | SimpleSpeciesReference::setName (const std::string& name)
2025-09-08T00:00:21,652         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:00:22,106   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T00:00:22,106   ./base/sbml/SimpleSpeciesReference.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:22,106      97 |   if (&orig == NULL)
2025-09-08T00:00:22,107         |   ^~
2025-09-08T00:00:22,107   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T00:00:22,107   ./base/sbml/SimpleSpeciesReference.cpp:115:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:22,107     115 |   if (&rhs == NULL)
2025-09-08T00:00:22,107         |   ^~
2025-09-08T00:00:22,107   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T00:00:22,108   ./base/sbml/SimpleSpeciesReference.cpp:215:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:22,108     215 |   if (&(sid) == NULL)
2025-09-08T00:00:22,108         |   ^~
2025-09-08T00:00:22,108   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T00:00:22,108   ./base/sbml/SimpleSpeciesReference.cpp:237:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:22,108     237 |   if (&(sid) == NULL)
2025-09-08T00:00:22,108         |   ^~
2025-09-08T00:00:22,108   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T00:00:22,108   ./base/sbml/SimpleSpeciesReference.cpp:301:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:22,109     301 |   if (&(name) == NULL)
2025-09-08T00:00:22,109         |   ^~
2025-09-08T00:00:26,509   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:00:26,509                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:00:26,509                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:00:26,509                    from ./base/sbml/Species.cpp:42:
2025-09-08T00:00:26,509   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:26,510      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:00:26,510         |                           ^~~~~~~~~~~~~~
2025-09-08T00:00:26,511   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:00:26,511                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:00:26,511                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:00:26,511                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:00:26,511                    from ./base/sbml/Species.cpp:35:
2025-09-08T00:00:26,511   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:26,511     117 |     struct unary_function
2025-09-08T00:00:26,511         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:26,750   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T00:00:26,750   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:00:26,751     167 |   if (&orig == NULL)
2025-09-08T00:00:26,751         |             ^
2025-09-08T00:00:26,751   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2025-09-08T00:00:26,751     164 | Species::Species(const Species& orig) :
2025-09-08T00:00:26,751         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:00:26,754   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T00:00:26,754   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:00:26,754     204 |   if (&rhs == NULL)
2025-09-08T00:00:26,754         |            ^
2025-09-08T00:00:26,755   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2025-09-08T00:00:26,755     202 | Species& Species::operator=(const Species& rhs)
2025-09-08T00:00:26,755         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:26,762   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T00:00:26,762   ./base/sbml/Species.cpp:616:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:26,763     616 |   if (&(sid) == NULL)
2025-09-08T00:00:26,763         |              ^
2025-09-08T00:00:26,763   ./base/sbml/Species.cpp:605:36: note: ‘sid’ declared here
2025-09-08T00:00:26,763     605 | Species::setId (const std::string& sid)
2025-09-08T00:00:26,763         |                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:26,764   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T00:00:26,764   ./base/sbml/Species.cpp:641:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:00:26,764     641 |   if (&(name) == NULL)
2025-09-08T00:00:26,764         |               ^
2025-09-08T00:00:26,765   ./base/sbml/Species.cpp:636:38: note: ‘name’ declared here
2025-09-08T00:00:26,765     636 | Species::setName (const std::string& name)
2025-09-08T00:00:26,765         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:00:26,766   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T00:00:26,766   ./base/sbml/Species.cpp:671:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:26,766     671 |   if (&(sid) == NULL)
2025-09-08T00:00:26,766         |              ^
2025-09-08T00:00:26,767   ./base/sbml/Species.cpp:669:45: note: ‘sid’ declared here
2025-09-08T00:00:26,767     669 | Species::setSpeciesType (const std::string& sid)
2025-09-08T00:00:26,767         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:26,768   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T00:00:26,768   ./base/sbml/Species.cpp:698:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:26,768     698 |   if (&(sid) == NULL)
2025-09-08T00:00:26,768         |              ^
2025-09-08T00:00:26,769   ./base/sbml/Species.cpp:696:45: note: ‘sid’ declared here
2025-09-08T00:00:26,769     696 | Species::setCompartment (const std::string& sid)
2025-09-08T00:00:26,769         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:26,770   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T00:00:26,771   ./base/sbml/Species.cpp:757:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:26,771     757 |   if (&(sid) == NULL)
2025-09-08T00:00:26,771         |              ^
2025-09-08T00:00:26,771   ./base/sbml/Species.cpp:755:48: note: ‘sid’ declared here
2025-09-08T00:00:26,771     755 | Species::setSubstanceUnits (const std::string& sid)
2025-09-08T00:00:26,771         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:26,772   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T00:00:26,772   ./base/sbml/Species.cpp:779:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:26,773     779 |   if (&(sid) == NULL)
2025-09-08T00:00:26,773         |              ^
2025-09-08T00:00:26,773   ./base/sbml/Species.cpp:777:50: note: ‘sid’ declared here
2025-09-08T00:00:26,773     777 | Species::setSpatialSizeUnits (const std::string& sid)
2025-09-08T00:00:26,773         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:26,776   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T00:00:26,776   ./base/sbml/Species.cpp:890:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:26,776     890 |   if (&(sid) == NULL)
2025-09-08T00:00:26,776         |              ^
2025-09-08T00:00:26,777   ./base/sbml/Species.cpp:888:50: note: ‘sid’ declared here
2025-09-08T00:00:26,777     888 | Species::setConversionFactor (const std::string& sid)
2025-09-08T00:00:26,777         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:26,832   ./base/sbml/Species.cpp: At global scope:
2025-09-08T00:00:26,832   ./base/sbml/Species.cpp:1913:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:26,832    1913 | struct IdEqS : public unary_function<SBase*, bool>
2025-09-08T00:00:26,832         |                       ^~~~~~~~~~~~~~
2025-09-08T00:00:26,832   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:26,832     117 |     struct unary_function
2025-09-08T00:00:26,832         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:26,836   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T00:00:26,836   ./base/sbml/Species.cpp:1936:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:26,836    1936 |   if (&(sid) == NULL)
2025-09-08T00:00:26,836         |              ^
2025-09-08T00:00:26,837   ./base/sbml/Species.cpp:1932:40: note: ‘sid’ declared here
2025-09-08T00:00:26,837    1932 | ListOfSpecies::get (const std::string& sid) const
2025-09-08T00:00:26,837         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:26,840   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T00:00:26,841   ./base/sbml/Species.cpp:1963:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:26,841    1963 |   if (&(sid) != NULL)
2025-09-08T00:00:26,841         |              ^
2025-09-08T00:00:26,841   ./base/sbml/Species.cpp:1958:43: note: ‘sid’ declared here
2025-09-08T00:00:26,841    1958 | ListOfSpecies::remove (const std::string& sid)
2025-09-08T00:00:26,841         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:26,847   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2025-09-08T00:00:26,847   ./base/sbml/Species.cpp:2041:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:26,847    2041 |   catch (SBMLConstructorException)
2025-09-08T00:00:26,847         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:26,847   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:00:26,848   ./base/sbml/Species.cpp:2057:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:26,848    2057 |   catch (SBMLConstructorException)
2025-09-08T00:00:26,848         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:27,406   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T00:00:27,406   ./base/sbml/Species.cpp:1936:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,406    1936 |   if (&(sid) == NULL)
2025-09-08T00:00:27,406         |   ^~
2025-09-08T00:00:27,409   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T00:00:27,410   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,410     167 |   if (&orig == NULL)
2025-09-08T00:00:27,410         |   ^~
2025-09-08T00:00:27,410   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T00:00:27,410   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,410     204 |   if (&rhs == NULL)
2025-09-08T00:00:27,410         |   ^~
2025-09-08T00:00:27,413   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T00:00:27,413   ./base/sbml/Species.cpp:616:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,413     616 |   if (&(sid) == NULL)
2025-09-08T00:00:27,414         |   ^~
2025-09-08T00:00:27,414   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T00:00:27,414   ./base/sbml/Species.cpp:641:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,414     641 |   if (&(name) == NULL)
2025-09-08T00:00:27,414         |   ^~
2025-09-08T00:00:27,414   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T00:00:27,414   ./base/sbml/Species.cpp:671:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,414     671 |   if (&(sid) == NULL)
2025-09-08T00:00:27,414         |   ^~
2025-09-08T00:00:27,414   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T00:00:27,415   ./base/sbml/Species.cpp:698:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,415     698 |   if (&(sid) == NULL)
2025-09-08T00:00:27,415         |   ^~
2025-09-08T00:00:27,415   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T00:00:27,415   ./base/sbml/Species.cpp:757:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,415     757 |   if (&(sid) == NULL)
2025-09-08T00:00:27,415         |   ^~
2025-09-08T00:00:27,416   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T00:00:27,416   ./base/sbml/Species.cpp:779:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,416     779 |   if (&(sid) == NULL)
2025-09-08T00:00:27,416         |   ^~
2025-09-08T00:00:27,417   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T00:00:27,417   ./base/sbml/Species.cpp:890:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,417     890 |   if (&(sid) == NULL)
2025-09-08T00:00:27,417         |   ^~
2025-09-08T00:00:27,430   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T00:00:27,430   ./base/sbml/Species.cpp:1963:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:27,430    1963 |   if (&(sid) != NULL)
2025-09-08T00:00:27,431         |   ^~
2025-09-08T00:00:37,307   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:00:37,307                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:00:37,307                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:00:37,307                    from ./base/sbml/SpeciesReference.cpp:48:
2025-09-08T00:00:37,307   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:37,307      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:00:37,307         |                           ^~~~~~~~~~~~~~
2025-09-08T00:00:37,308   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:00:37,308                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:00:37,309                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:00:37,309                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:00:37,309                    from ./base/sbml/SpeciesReference.cpp:35:
2025-09-08T00:00:37,309   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:37,309     117 |     struct unary_function
2025-09-08T00:00:37,309         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:37,558   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T00:00:37,559   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:00:37,559     129 |   if (&orig == NULL)
2025-09-08T00:00:37,559         |             ^
2025-09-08T00:00:37,559   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2025-09-08T00:00:37,559     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2025-09-08T00:00:37,559         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:00:37,562   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T00:00:37,562   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:00:37,562     157 |   if (&rhs == NULL)
2025-09-08T00:00:37,562         |            ^
2025-09-08T00:00:37,562   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2025-09-08T00:00:37,562     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2025-09-08T00:00:37,562         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:37,598   ./base/sbml/SpeciesReference.cpp: At global scope:
2025-09-08T00:00:37,598   ./base/sbml/SpeciesReference.cpp:1209:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:37,598    1209 | struct IdEqSSR : public unary_function<SBase*, bool>
2025-09-08T00:00:37,598         |                         ^~~~~~~~~~~~~~
2025-09-08T00:00:37,599   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:37,599     117 |     struct unary_function
2025-09-08T00:00:37,599         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:37,603   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T00:00:37,604   ./base/sbml/SpeciesReference.cpp:1251:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:37,604    1251 |   if (&(sid) == NULL)
2025-09-08T00:00:37,604         |              ^
2025-09-08T00:00:37,604   ./base/sbml/SpeciesReference.cpp:1247:50: note: ‘sid’ declared here
2025-09-08T00:00:37,604    1247 | ListOfSpeciesReferences::get (const std::string& sid) const
2025-09-08T00:00:37,604         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:37,608   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T00:00:37,608   ./base/sbml/SpeciesReference.cpp:1279:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:37,608    1279 |   if (&(sid) != NULL)
2025-09-08T00:00:37,608         |              ^
2025-09-08T00:00:37,608   ./base/sbml/SpeciesReference.cpp:1274:53: note: ‘sid’ declared here
2025-09-08T00:00:37,608    1274 | ListOfSpeciesReferences::remove (const std::string& sid)
2025-09-08T00:00:37,609         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:37,621   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2025-09-08T00:00:37,621   ./base/sbml/SpeciesReference.cpp:1448:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:37,621    1448 |   catch (SBMLConstructorException)
2025-09-08T00:00:37,621         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:37,622   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:00:37,622   ./base/sbml/SpeciesReference.cpp:1464:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:37,622    1464 |   catch (SBMLConstructorException)
2025-09-08T00:00:37,623         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:37,624   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2025-09-08T00:00:37,624   ./base/sbml/SpeciesReference.cpp:1480:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:37,624    1480 |   catch (SBMLConstructorException)
2025-09-08T00:00:37,624         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:37,625   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:00:37,625   ./base/sbml/SpeciesReference.cpp:1496:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:37,625    1496 |   catch (SBMLConstructorException)
2025-09-08T00:00:37,625         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:38,143   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T00:00:38,144   ./base/sbml/SpeciesReference.cpp:1251:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:38,144    1251 |   if (&(sid) == NULL)
2025-09-08T00:00:38,144         |   ^~
2025-09-08T00:00:38,148   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T00:00:38,148   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:38,148     129 |   if (&orig == NULL)
2025-09-08T00:00:38,148         |   ^~
2025-09-08T00:00:38,149   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T00:00:38,149   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:38,149     157 |   if (&rhs == NULL)
2025-09-08T00:00:38,149         |   ^~
2025-09-08T00:00:38,162   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T00:00:38,162   ./base/sbml/SpeciesReference.cpp:1279:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:38,162    1279 |   if (&(sid) != NULL)
2025-09-08T00:00:38,162         |   ^~
2025-09-08T00:00:43,976   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:00:43,976                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:00:43,976                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:00:43,976                    from ./base/sbml/SpeciesType.cpp:41:
2025-09-08T00:00:43,976   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:43,977      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:00:43,977         |                           ^~~~~~~~~~~~~~
2025-09-08T00:00:43,977   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:00:43,977                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:00:43,977                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:00:43,977                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:00:43,977                    from ./base/sbml/SpeciesType.cpp:33:
2025-09-08T00:00:43,977   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:43,977     117 |     struct unary_function
2025-09-08T00:00:43,978         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:44,209   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T00:00:44,209   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:00:44,209      92 |   if (&orig == NULL)
2025-09-08T00:00:44,209         |             ^
2025-09-08T00:00:44,209   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2025-09-08T00:00:44,209      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2025-09-08T00:00:44,209         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:00:44,210   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T00:00:44,210   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:00:44,210     109 |   if (&rhs == NULL)
2025-09-08T00:00:44,210         |            ^
2025-09-08T00:00:44,211   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2025-09-08T00:00:44,211     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2025-09-08T00:00:44,211         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:44,213   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T00:00:44,213   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:44,214     206 |   if (&(sid) == NULL)
2025-09-08T00:00:44,214         |              ^
2025-09-08T00:00:44,214   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2025-09-08T00:00:44,214     195 | SpeciesType::setId (const std::string& sid)
2025-09-08T00:00:44,214         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:44,214   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T00:00:44,214   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:00:44,214     231 |   if (&(name) == NULL)
2025-09-08T00:00:44,214         |               ^
2025-09-08T00:00:44,215   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2025-09-08T00:00:44,215     226 | SpeciesType::setName (const std::string& name)
2025-09-08T00:00:44,215         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:00:44,225   ./base/sbml/SpeciesType.cpp: At global scope:
2025-09-08T00:00:44,225   ./base/sbml/SpeciesType.cpp:541:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:44,225     541 | struct IdEqST : public unary_function<SBase*, bool>
2025-09-08T00:00:44,225         |                        ^~~~~~~~~~~~~~
2025-09-08T00:00:44,226   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:44,226     117 |     struct unary_function
2025-09-08T00:00:44,226         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:44,229   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T00:00:44,229   ./base/sbml/SpeciesType.cpp:566:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:44,229     566 |   if (&(sid) == NULL)
2025-09-08T00:00:44,229         |              ^
2025-09-08T00:00:44,229   ./base/sbml/SpeciesType.cpp:562:45: note: ‘sid’ declared here
2025-09-08T00:00:44,229     562 | ListOfSpeciesTypes::get (const std::string& sid) const
2025-09-08T00:00:44,229         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:44,232   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T00:00:44,232   ./base/sbml/SpeciesType.cpp:594:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:00:44,233     594 |   if (&(sid) != NULL)
2025-09-08T00:00:44,233         |              ^
2025-09-08T00:00:44,233   ./base/sbml/SpeciesType.cpp:589:48: note: ‘sid’ declared here
2025-09-08T00:00:44,233     589 | ListOfSpeciesTypes::remove (const std::string& sid)
2025-09-08T00:00:44,233         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:44,237   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2025-09-08T00:00:44,238   ./base/sbml/SpeciesType.cpp:673:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:44,238     673 |   catch (SBMLConstructorException)
2025-09-08T00:00:44,238         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:44,238   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:00:44,238   ./base/sbml/SpeciesType.cpp:689:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:44,239     689 |   catch (SBMLConstructorException)
2025-09-08T00:00:44,239         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:44,726   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T00:00:44,726   ./base/sbml/SpeciesType.cpp:566:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:44,726     566 |   if (&(sid) == NULL)
2025-09-08T00:00:44,726         |   ^~
2025-09-08T00:00:44,729   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T00:00:44,729   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:44,729      92 |   if (&orig == NULL)
2025-09-08T00:00:44,729         |   ^~
2025-09-08T00:00:44,729   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T00:00:44,729   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:44,729     109 |   if (&rhs == NULL)
2025-09-08T00:00:44,730         |   ^~
2025-09-08T00:00:44,731   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T00:00:44,732   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:44,732     206 |   if (&(sid) == NULL)
2025-09-08T00:00:44,732         |   ^~
2025-09-08T00:00:44,732   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T00:00:44,732   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:44,732     231 |   if (&(name) == NULL)
2025-09-08T00:00:44,732         |   ^~
2025-09-08T00:00:44,739   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T00:00:44,739   ./base/sbml/SpeciesType.cpp:594:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:44,739     594 |   if (&(sid) != NULL)
2025-09-08T00:00:44,739         |   ^~
2025-09-08T00:00:49,585   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:00:49,585                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:00:49,586                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:00:49,586                    from ./base/sbml/StoichiometryMath.cpp:46:
2025-09-08T00:00:49,586   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:49,586      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:00:49,586         |                           ^~~~~~~~~~~~~~
2025-09-08T00:00:49,587   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:00:49,587                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:00:49,587                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:00:49,587                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:00:49,587                    from ./base/sbml/StoichiometryMath.cpp:33:
2025-09-08T00:00:49,587   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:49,587     117 |     struct unary_function
2025-09-08T00:00:49,587         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:49,817   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T00:00:49,817   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:00:49,817      98 |   if (&orig == NULL)
2025-09-08T00:00:49,817         |             ^
2025-09-08T00:00:49,817   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2025-09-08T00:00:49,818      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2025-09-08T00:00:49,818         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:00:49,819   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T00:00:49,820   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:00:49,820     120 |   if (&rhs == NULL)
2025-09-08T00:00:49,820         |            ^
2025-09-08T00:00:49,820   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2025-09-08T00:00:49,820     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2025-09-08T00:00:49,820         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:49,837   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2025-09-08T00:00:49,838   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:49,838     627 |   catch (SBMLConstructorException)
2025-09-08T00:00:49,838         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:49,839   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:00:49,839   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:49,839     643 |   catch (SBMLConstructorException)
2025-09-08T00:00:49,839         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:50,276   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T00:00:50,276   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:50,276      98 |   if (&orig == NULL)
2025-09-08T00:00:50,277         |   ^~
2025-09-08T00:00:50,277   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T00:00:50,277   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:50,278     120 |   if (&rhs == NULL)
2025-09-08T00:00:50,278         |   ^~
2025-09-08T00:00:58,134   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:00:58,134                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:00:58,134                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:00:58,134                    from ./base/sbml/Trigger.cpp:46:
2025-09-08T00:00:58,135   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:00:58,135      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:00:58,135         |                           ^~~~~~~~~~~~~~
2025-09-08T00:00:58,135   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:00:58,135                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:00:58,135                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:00:58,135                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:00:58,135                    from ./base/sbml/Trigger.cpp:33:
2025-09-08T00:00:58,135   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:00:58,136     117 |     struct unary_function
2025-09-08T00:00:58,136         |            ^~~~~~~~~~~~~~
2025-09-08T00:00:58,363   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T00:00:58,363   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:00:58,363     106 |   if (&orig == NULL)
2025-09-08T00:00:58,363         |             ^
2025-09-08T00:00:58,363   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2025-09-08T00:00:58,363     102 | Trigger::Trigger (const Trigger& orig) :
2025-09-08T00:00:58,363         |                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:00:58,364   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T00:00:58,364   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:00:58,365     131 |   if (&rhs == NULL)
2025-09-08T00:00:58,365         |            ^
2025-09-08T00:00:58,365   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2025-09-08T00:00:58,365     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2025-09-08T00:00:58,365         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T00:00:58,382   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2025-09-08T00:00:58,383   ./base/sbml/Trigger.cpp:670:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:58,383     670 |   catch (SBMLConstructorException)
2025-09-08T00:00:58,383         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:58,383   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:00:58,383   ./base/sbml/Trigger.cpp:686:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:00:58,384     686 |   catch (SBMLConstructorException)
2025-09-08T00:00:58,384         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:00:58,820   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T00:00:58,820   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:58,821     106 |   if (&orig == NULL)
2025-09-08T00:00:58,821         |   ^~
2025-09-08T00:00:58,821   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T00:00:58,821   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:00:58,821     131 |   if (&rhs == NULL)
2025-09-08T00:00:58,821         |   ^~
2025-09-08T00:01:02,900   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:01:02,900                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:01:02,900                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:01:02,900                    from ./base/sbml/Unit.cpp:41:
2025-09-08T00:01:02,900   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:01:02,900      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:01:02,900         |                           ^~~~~~~~~~~~~~
2025-09-08T00:01:02,901   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:01:02,901                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:01:02,901                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:01:02,901                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:01:02,902                    from ./base/sbml/Unit.cpp:33:
2025-09-08T00:01:02,902   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:01:02,902     117 |     struct unary_function
2025-09-08T00:01:02,902         |            ^~~~~~~~~~~~~~
2025-09-08T00:01:03,135   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T00:01:03,135   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:01:03,135     150 |   if (&orig == NULL)
2025-09-08T00:01:03,135         |             ^
2025-09-08T00:01:03,136   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2025-09-08T00:01:03,136     147 | Unit::Unit(const Unit& orig) :
2025-09-08T00:01:03,136         |            ~~~~~~~~~~~~^~~~
2025-09-08T00:01:03,138   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T00:01:03,138   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:01:03,138     179 |   if (&rhs == NULL)
2025-09-08T00:01:03,138         |            ^
2025-09-08T00:01:03,138   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2025-09-08T00:01:03,139     177 | Unit& Unit::operator=(const Unit& rhs)
2025-09-08T00:01:03,139         |                       ~~~~~~~~~~~~^~~
2025-09-08T00:01:03,225   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2025-09-08T00:01:03,225   ./base/sbml/Unit.cpp:2197:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:01:03,225    2197 |   catch (SBMLConstructorException)
2025-09-08T00:01:03,225         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:03,227   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:01:03,227   ./base/sbml/Unit.cpp:2213:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:01:03,227    2213 |   catch (SBMLConstructorException)
2025-09-08T00:01:03,227         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:03,761   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T00:01:03,761   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:03,761     150 |   if (&orig == NULL)
2025-09-08T00:01:03,761         |   ^~
2025-09-08T00:01:03,762   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T00:01:03,762   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:03,762     179 |   if (&rhs == NULL)
2025-09-08T00:01:03,762         |   ^~
2025-09-08T00:01:10,615   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:01:10,616                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:01:10,616                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:01:10,616                    from ./base/sbml/UnitDefinition.cpp:44:
2025-09-08T00:01:10,616   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:01:10,616      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:01:10,616         |                           ^~~~~~~~~~~~~~
2025-09-08T00:01:10,616   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:01:10,616                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:01:10,616                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:01:10,617                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:01:10,617                    from ./base/sbml/UnitDefinition.cpp:34:
2025-09-08T00:01:10,617   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:01:10,617     117 |     struct unary_function
2025-09-08T00:01:10,617         |            ^~~~~~~~~~~~~~
2025-09-08T00:01:10,851   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T00:01:10,851   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:01:10,851     104 |   if (&orig == NULL)
2025-09-08T00:01:10,851         |             ^
2025-09-08T00:01:10,851   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2025-09-08T00:01:10,851     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2025-09-08T00:01:10,852         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:10,852   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T00:01:10,853   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:01:10,853     123 |   if (&rhs == NULL)
2025-09-08T00:01:10,853         |            ^
2025-09-08T00:01:10,853   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2025-09-08T00:01:10,853     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2025-09-08T00:01:10,853         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:01:10,859   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T00:01:10,859   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:01:10,860     262 |   if (&(sid) == NULL)
2025-09-08T00:01:10,860         |              ^
2025-09-08T00:01:10,860   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2025-09-08T00:01:10,860     251 | UnitDefinition::setId (const std::string& sid)
2025-09-08T00:01:10,860         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:01:10,860   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T00:01:10,860   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:01:10,860     287 |   if (&(name) == NULL)
2025-09-08T00:01:10,860         |               ^
2025-09-08T00:01:10,861   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2025-09-08T00:01:10,861     282 | UnitDefinition::setName (const std::string& name)
2025-09-08T00:01:10,861         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:10,907   ./base/sbml/UnitDefinition.cpp: At global scope:
2025-09-08T00:01:10,908   ./base/sbml/UnitDefinition.cpp:1666:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:01:10,908    1666 | struct IdEqUD : public unary_function<SBase*, bool>
2025-09-08T00:01:10,908         |                        ^~~~~~~~~~~~~~
2025-09-08T00:01:10,908   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:01:10,908     117 |     struct unary_function
2025-09-08T00:01:10,908         |            ^~~~~~~~~~~~~~
2025-09-08T00:01:10,911   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T00:01:10,911   ./base/sbml/UnitDefinition.cpp:1691:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:01:10,911    1691 |   if (&(sid) == NULL)
2025-09-08T00:01:10,911         |              ^
2025-09-08T00:01:10,911   ./base/sbml/UnitDefinition.cpp:1687:48: note: ‘sid’ declared here
2025-09-08T00:01:10,912    1687 | ListOfUnitDefinitions::get (const std::string& sid) const
2025-09-08T00:01:10,912         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:01:10,915   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T00:01:10,916   ./base/sbml/UnitDefinition.cpp:1733:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:01:10,916    1733 |   if (&(sid) != NULL)
2025-09-08T00:01:10,916         |              ^
2025-09-08T00:01:10,916   ./base/sbml/UnitDefinition.cpp:1728:51: note: ‘sid’ declared here
2025-09-08T00:01:10,916    1728 | ListOfUnitDefinitions::remove (const std::string& sid)
2025-09-08T00:01:10,916         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:01:10,922   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2025-09-08T00:01:10,922   ./base/sbml/UnitDefinition.cpp:1811:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:01:10,922    1811 |   catch (SBMLConstructorException)
2025-09-08T00:01:10,922         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:10,922   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:01:10,923   ./base/sbml/UnitDefinition.cpp:1827:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:01:10,923    1827 |   catch (SBMLConstructorException)
2025-09-08T00:01:10,923         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:11,454   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T00:01:11,455   ./base/sbml/UnitDefinition.cpp:1691:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:11,455    1691 |   if (&(sid) == NULL)
2025-09-08T00:01:11,455         |   ^~
2025-09-08T00:01:11,457   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T00:01:11,457   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:11,458     123 |   if (&rhs == NULL)
2025-09-08T00:01:11,458         |   ^~
2025-09-08T00:01:11,460   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T00:01:11,460   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:11,460     262 |   if (&(sid) == NULL)
2025-09-08T00:01:11,460         |   ^~
2025-09-08T00:01:11,461   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T00:01:11,461   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:11,461     287 |   if (&(name) == NULL)
2025-09-08T00:01:11,461         |   ^~
2025-09-08T00:01:11,470   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T00:01:11,470   ./base/sbml/UnitDefinition.cpp:1733:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:11,470    1733 |   if (&(sid) != NULL)
2025-09-08T00:01:11,470         |   ^~
2025-09-08T00:01:11,473   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T00:01:11,473   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:11,473     104 |   if (&orig == NULL)
2025-09-08T00:01:11,473         |   ^~
2025-09-08T00:01:17,900   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T00:01:17,901   ./base/sbml/annotation/CVTerm.cpp:130:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:01:17,901     130 |   if (&orig == NULL)
2025-09-08T00:01:17,901         |             ^
2025-09-08T00:01:17,901   ./base/sbml/annotation/CVTerm.cpp:128:30: note: ‘orig’ declared here
2025-09-08T00:01:17,901     128 | CVTerm::CVTerm(const CVTerm& orig)
2025-09-08T00:01:17,901         |                ~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:17,903   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T00:01:17,903   ./base/sbml/annotation/CVTerm.cpp:150:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:01:17,903     150 |   if (&rhs == NULL)
2025-09-08T00:01:17,903         |            ^
2025-09-08T00:01:17,903   ./base/sbml/annotation/CVTerm.cpp:148:33: note: ‘rhs’ declared here
2025-09-08T00:01:17,903     148 | CVTerm::operator=(const CVTerm& rhs)
2025-09-08T00:01:17,903         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T00:01:17,907   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T00:01:17,907   ./base/sbml/annotation/CVTerm.cpp:256:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T00:01:17,907     256 |   if (&qualifier == NULL)
2025-09-08T00:01:17,908         |                  ^
2025-09-08T00:01:17,908   ./base/sbml/annotation/CVTerm.cpp:253:50: note: ‘qualifier’ declared here
2025-09-08T00:01:17,908     253 | CVTerm::setModelQualifierType(const std::string& qualifier)
2025-09-08T00:01:17,908         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:01:17,909   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T00:01:17,909   ./base/sbml/annotation/CVTerm.cpp:273:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T00:01:17,909     273 |   if (&qualifier == NULL)
2025-09-08T00:01:17,909         |                  ^
2025-09-08T00:01:17,909   ./base/sbml/annotation/CVTerm.cpp:270:55: note: ‘qualifier’ declared here
2025-09-08T00:01:17,909     270 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2025-09-08T00:01:17,910         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:01:17,911   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T00:01:17,911   ./base/sbml/annotation/CVTerm.cpp:355:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2025-09-08T00:01:17,911     355 |   if (&resource == NULL || resource.empty())
2025-09-08T00:01:17,912         |                 ^
2025-09-08T00:01:17,912   ./base/sbml/annotation/CVTerm.cpp:353:40: note: ‘resource’ declared here
2025-09-08T00:01:17,912     353 | CVTerm::addResource(const std::string& resource)
2025-09-08T00:01:17,912         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:01:18,260   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T00:01:18,261   ./base/sbml/annotation/CVTerm.cpp:256:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:18,261     256 |   if (&qualifier == NULL)
2025-09-08T00:01:18,261         |   ^~
2025-09-08T00:01:18,261   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T00:01:18,261   ./base/sbml/annotation/CVTerm.cpp:273:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:18,262     273 |   if (&qualifier == NULL)
2025-09-08T00:01:18,262         |   ^~
2025-09-08T00:01:18,265   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T00:01:18,265   ./base/sbml/annotation/CVTerm.cpp:130:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:18,265     130 |   if (&orig == NULL)
2025-09-08T00:01:18,265         |   ^~
2025-09-08T00:01:18,266   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T00:01:18,266   ./base/sbml/annotation/CVTerm.cpp:150:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:18,266     150 |   if (&rhs == NULL)
2025-09-08T00:01:18,266         |   ^~
2025-09-08T00:01:18,267   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T00:01:18,267   ./base/sbml/annotation/CVTerm.cpp:355:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:18,267     355 |   if (&resource == NULL || resource.empty())
2025-09-08T00:01:18,267         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:20,984   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T00:01:20,984   ./base/sbml/annotation/Date.cpp:75:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T00:01:20,984      75 |   if (&(date) == NULL)
2025-09-08T00:01:20,984         |               ^
2025-09-08T00:01:20,984   ./base/sbml/annotation/Date.cpp:72:32: note: ‘date’ declared here
2025-09-08T00:01:20,984      72 | Date::Date (const std::string& date) :
2025-09-08T00:01:20,984         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:20,986   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T00:01:20,986   ./base/sbml/annotation/Date.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:01:20,986      91 |   if (&orig == NULL)
2025-09-08T00:01:20,986         |             ^
2025-09-08T00:01:20,986   ./base/sbml/annotation/Date.cpp:89:24: note: ‘orig’ declared here
2025-09-08T00:01:20,986      89 | Date::Date(const Date& orig)
2025-09-08T00:01:20,987         |            ~~~~~~~~~~~~^~~~
2025-09-08T00:01:20,989   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T00:01:20,989   ./base/sbml/annotation/Date.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:01:20,989     119 |   if (&rhs == NULL)
2025-09-08T00:01:20,989         |            ^
2025-09-08T00:01:20,989   ./base/sbml/annotation/Date.cpp:117:35: note: ‘rhs’ declared here
2025-09-08T00:01:20,989     117 | Date& Date::operator=(const Date& rhs)
2025-09-08T00:01:20,989         |                       ~~~~~~~~~~~~^~~
2025-09-08T00:01:20,995   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T00:01:20,995   ./base/sbml/annotation/Date.cpp:389:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T00:01:20,995     389 |   if (&(date) == NULL)
2025-09-08T00:01:20,995         |               ^
2025-09-08T00:01:20,995   ./base/sbml/annotation/Date.cpp:383:43: note: ‘date’ declared here
2025-09-08T00:01:20,996     383 | Date::setDateAsString (const std::string& date)
2025-09-08T00:01:20,996         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:21,356   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T00:01:21,356   ./base/sbml/annotation/Date.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:21,356      91 |   if (&orig == NULL)
2025-09-08T00:01:21,356         |   ^~
2025-09-08T00:01:21,357   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T00:01:21,357   ./base/sbml/annotation/Date.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:21,357     119 |   if (&rhs == NULL)
2025-09-08T00:01:21,357         |   ^~
2025-09-08T00:01:21,359   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T00:01:21,359   ./base/sbml/annotation/Date.cpp:75:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:21,359      75 |   if (&(date) == NULL)
2025-09-08T00:01:21,360         |   ^~
2025-09-08T00:01:21,362   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T00:01:21,362   ./base/sbml/annotation/Date.cpp:389:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:21,362     389 |   if (&(date) == NULL)
2025-09-08T00:01:21,363         |   ^~
2025-09-08T00:01:21,544   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2025-09-08T00:01:21,544   ./base/sbml/annotation/Date.cpp:443:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:01:21,544     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T00:01:21,544         |                        ^~
2025-09-08T00:01:21,544   ./base/sbml/annotation/Date.cpp:443:20: note: directive argument in the range [10, 4294967295]
2025-09-08T00:01:21,545     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T00:01:21,545         |                    ^~~~~~~~
2025-09-08T00:01:21,545   ./base/sbml/annotation/Date.cpp:443:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2025-09-08T00:01:21,545     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T00:01:21,545         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:21,545   ./base/sbml/annotation/Date.cpp:449:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:01:21,545     449 |     sprintf(cdate, "%uT", mDay);
2025-09-08T00:01:21,546         |                       ^
2025-09-08T00:01:21,546   ./base/sbml/annotation/Date.cpp:449:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T00:01:21,546     449 |     sprintf(cdate, "%uT", mDay);
2025-09-08T00:01:21,546         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:21,546   ./base/sbml/annotation/Date.cpp:455:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:01:21,546     455 |     sprintf(cdate, "%u:", mHour);
2025-09-08T00:01:21,546         |                       ^
2025-09-08T00:01:21,547   ./base/sbml/annotation/Date.cpp:455:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T00:01:21,547     455 |     sprintf(cdate, "%u:", mHour);
2025-09-08T00:01:21,547         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:21,547   ./base/sbml/annotation/Date.cpp:461:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:01:21,547     461 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T00:01:21,547         |                       ^
2025-09-08T00:01:21,547   ./base/sbml/annotation/Date.cpp:461:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T00:01:21,548     461 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T00:01:21,548         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:21,548   ./base/sbml/annotation/Date.cpp:467:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T00:01:21,548     467 |     sprintf(cdate, "%u", mSecond);
2025-09-08T00:01:21,548         |                       ^
2025-09-08T00:01:21,548   ./base/sbml/annotation/Date.cpp:467:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T00:01:21,548     467 |     sprintf(cdate, "%u", mSecond);
2025-09-08T00:01:21,549         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:21,549   ./base/sbml/annotation/Date.cpp:486:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:01:21,549     486 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T00:01:21,549         |                         ^
2025-09-08T00:01:21,549   ./base/sbml/annotation/Date.cpp:486:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T00:01:21,549     486 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T00:01:21,550         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:21,550   ./base/sbml/annotation/Date.cpp:492:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T00:01:21,550     492 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T00:01:21,550         |                         ^
2025-09-08T00:01:21,550   ./base/sbml/annotation/Date.cpp:492:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T00:01:21,550     492 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T00:01:21,550         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:01:24,122   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T00:01:24,123   ./base/sbml/annotation/ModelCreator.cpp:132:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:01:24,123     132 |   if (&orig == NULL)
2025-09-08T00:01:24,123         |             ^
2025-09-08T00:01:24,123   ./base/sbml/annotation/ModelCreator.cpp:130:48: note: ‘orig’ declared here
2025-09-08T00:01:24,123     130 | ModelCreator::ModelCreator(const ModelCreator& orig)
2025-09-08T00:01:24,123         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:24,125   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T00:01:24,126   ./base/sbml/annotation/ModelCreator.cpp:159:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:01:24,126     159 |   if (&rhs == NULL)
2025-09-08T00:01:24,126         |            ^
2025-09-08T00:01:24,126   ./base/sbml/annotation/ModelCreator.cpp:157:59: note: ‘rhs’ declared here
2025-09-08T00:01:24,126     157 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2025-09-08T00:01:24,126         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:01:24,129   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T00:01:24,129   ./base/sbml/annotation/ModelCreator.cpp:233:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:01:24,129     233 |   if (&(name) == NULL)
2025-09-08T00:01:24,129         |               ^
2025-09-08T00:01:24,129   ./base/sbml/annotation/ModelCreator.cpp:231:48: note: ‘name’ declared here
2025-09-08T00:01:24,130     231 | ModelCreator::setFamilyName(const std::string& name)
2025-09-08T00:01:24,130         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:24,130   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T00:01:24,131   ./base/sbml/annotation/ModelCreator.cpp:252:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:01:24,131     252 |   if (&(name) == NULL)
2025-09-08T00:01:24,131         |               ^
2025-09-08T00:01:24,131   ./base/sbml/annotation/ModelCreator.cpp:250:47: note: ‘name’ declared here
2025-09-08T00:01:24,131     250 | ModelCreator::setGivenName(const std::string& name)
2025-09-08T00:01:24,131         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:24,132   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T00:01:24,132   ./base/sbml/annotation/ModelCreator.cpp:271:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2025-09-08T00:01:24,132     271 |   if (&(email) == NULL)
2025-09-08T00:01:24,132         |                ^
2025-09-08T00:01:24,133   ./base/sbml/annotation/ModelCreator.cpp:269:43: note: ‘email’ declared here
2025-09-08T00:01:24,133     269 | ModelCreator::setEmail(const std::string& email)
2025-09-08T00:01:24,133         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:01:24,134   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T00:01:24,134   ./base/sbml/annotation/ModelCreator.cpp:287:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2025-09-08T00:01:24,134     287 |   if (&(organization) == NULL)
2025-09-08T00:01:24,134         |                       ^
2025-09-08T00:01:24,134   ./base/sbml/annotation/ModelCreator.cpp:285:50: note: ‘organization’ declared here
2025-09-08T00:01:24,134     285 | ModelCreator::setOrganization(const std::string& organization)
2025-09-08T00:01:24,134         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T00:01:24,487   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T00:01:24,487   ./base/sbml/annotation/ModelCreator.cpp:233:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:24,487     233 |   if (&(name) == NULL)
2025-09-08T00:01:24,487         |   ^~
2025-09-08T00:01:24,488   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T00:01:24,488   ./base/sbml/annotation/ModelCreator.cpp:252:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:24,488     252 |   if (&(name) == NULL)
2025-09-08T00:01:24,488         |   ^~
2025-09-08T00:01:24,488   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T00:01:24,489   ./base/sbml/annotation/ModelCreator.cpp:271:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:24,489     271 |   if (&(email) == NULL)
2025-09-08T00:01:24,489         |   ^~
2025-09-08T00:01:24,489   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T00:01:24,489   ./base/sbml/annotation/ModelCreator.cpp:287:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:24,489     287 |   if (&(organization) == NULL)
2025-09-08T00:01:24,489         |   ^~
2025-09-08T00:01:24,496   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T00:01:24,496   ./base/sbml/annotation/ModelCreator.cpp:132:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:24,496     132 |   if (&orig == NULL)
2025-09-08T00:01:24,496         |   ^~
2025-09-08T00:01:24,497   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T00:01:24,497   ./base/sbml/annotation/ModelCreator.cpp:159:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:24,497     159 |   if (&rhs == NULL)
2025-09-08T00:01:24,498         |   ^~
2025-09-08T00:01:27,354   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T00:01:27,354   ./base/sbml/annotation/ModelHistory.cpp:87:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:01:27,354      87 |   if (&orig == NULL)
2025-09-08T00:01:27,355         |             ^
2025-09-08T00:01:27,355   ./base/sbml/annotation/ModelHistory.cpp:85:48: note: ‘orig’ declared here
2025-09-08T00:01:27,355      85 | ModelHistory::ModelHistory(const ModelHistory& orig)
2025-09-08T00:01:27,355         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:27,358   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T00:01:27,358   ./base/sbml/annotation/ModelHistory.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:01:27,358     123 |   if (&rhs == NULL)
2025-09-08T00:01:27,358         |            ^
2025-09-08T00:01:27,358   ./base/sbml/annotation/ModelHistory.cpp:121:45: note: ‘rhs’ declared here
2025-09-08T00:01:27,358     121 | ModelHistory::operator=(const ModelHistory& rhs)
2025-09-08T00:01:27,358         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:01:27,707   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T00:01:27,707   ./base/sbml/annotation/ModelHistory.cpp:87:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:27,707      87 |   if (&orig == NULL)
2025-09-08T00:01:27,707         |   ^~
2025-09-08T00:01:27,708   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T00:01:27,709   ./base/sbml/annotation/ModelHistory.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:27,709     123 |   if (&rhs == NULL)
2025-09-08T00:01:27,709         |   ^~
2025-09-08T00:01:30,860   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:01:30,860                    from ./base//sbml/Model.h:426,
2025-09-08T00:01:30,860                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2025-09-08T00:01:30,861   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:01:30,861      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:01:30,861         |                           ^~~~~~~~~~~~~~
2025-09-08T00:01:30,861   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:01:30,862                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:01:30,862                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:01:30,862                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:29:
2025-09-08T00:01:30,862   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:01:30,862     117 |     struct unary_function
2025-09-08T00:01:30,862         |            ^~~~~~~~~~~~~~
2025-09-08T00:01:31,134   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T00:01:31,134   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:01:31,134      67 |   if (&element == NULL || stream == NULL) return;
2025-09-08T00:01:31,134         |                ^
2025-09-08T00:01:31,134   ./base/sbml/annotation/RDFAnnotationParser.cpp:64:51: note: ‘element’ declared here
2025-09-08T00:01:31,135      64 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T00:01:31,135         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:01:31,650   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:31,650      67 |   if (&element == NULL || stream == NULL) return;
2025-09-08T00:01:31,650         |                ^
2025-09-08T00:01:53,233   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T00:01:53,234   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:01:53,234     110 |   if (&orig == NULL)
2025-09-08T00:01:53,234         |             ^
2025-09-08T00:01:53,234   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2025-09-08T00:01:53,234     108 |   (const ConversionOption& orig)
2025-09-08T00:01:53,234         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:53,236   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T00:01:53,236   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:01:53,236     128 |   if (&rhs == NULL)
2025-09-08T00:01:53,237         |            ^
2025-09-08T00:01:53,237   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2025-09-08T00:01:53,237     126 | ConversionOption::operator=(const ConversionOption& rhs)
2025-09-08T00:01:53,237         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:01:53,630   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T00:01:53,630   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:53,630     110 |   if (&orig == NULL)
2025-09-08T00:01:53,630         |   ^~
2025-09-08T00:01:53,631   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T00:01:53,631   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:53,631     128 |   if (&rhs == NULL)
2025-09-08T00:01:53,631         |   ^~
2025-09-08T00:01:57,953   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T00:01:57,953   ./base/sbml/conversion/ConversionProperties.cpp:56:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:01:57,953      56 |   if (&orig == NULL)
2025-09-08T00:01:57,953         |             ^
2025-09-08T00:01:57,953   ./base/sbml/conversion/ConversionProperties.cpp:53:72: note: ‘orig’ declared here
2025-09-08T00:01:57,954      53 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2025-09-08T00:01:57,954         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:01:57,993   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T00:01:57,993   ./base/sbml/conversion/ConversionProperties.cpp:79:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:01:57,993      79 |   if (&rhs == NULL)
2025-09-08T00:01:57,993         |            ^
2025-09-08T00:01:57,994   ./base/sbml/conversion/ConversionProperties.cpp:77:61: note: ‘rhs’ declared here
2025-09-08T00:01:57,994      77 | ConversionProperties::operator=(const ConversionProperties& rhs)
2025-09-08T00:01:57,994         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:01:58,006   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T00:01:58,006   ./base/sbml/conversion/ConversionProperties.cpp:229:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2025-09-08T00:01:58,006     229 |   if (&option == NULL) return;
2025-09-08T00:01:58,006         |               ^
2025-09-08T00:01:58,006   ./base/sbml/conversion/ConversionProperties.cpp:227:57: note: ‘option’ declared here
2025-09-08T00:01:58,006     227 | ConversionProperties::addOption(const ConversionOption &option)
2025-09-08T00:01:58,007         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:01:58,508   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T00:01:58,508   ./base/sbml/conversion/ConversionProperties.cpp:56:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:58,508      56 |   if (&orig == NULL)
2025-09-08T00:01:58,508         |   ^~
2025-09-08T00:01:58,509   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T00:01:58,510   ./base/sbml/conversion/ConversionProperties.cpp:79:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:58,510      79 |   if (&rhs == NULL)
2025-09-08T00:01:58,510         |   ^~
2025-09-08T00:01:58,510   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T00:01:58,511   ./base/sbml/conversion/ConversionProperties.cpp:229:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:01:58,511     229 |   if (&option == NULL) return;
2025-09-08T00:01:58,511         |   ^~
2025-09-08T00:02:04,919   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:04,919                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:04,919                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:04,919                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:04,919                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:04,919                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75,
2025-09-08T00:02:04,919                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2025-09-08T00:02:04,919   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:04,919      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:04,920         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:04,920   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:04,920                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:02:04,921                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:02:04,921                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:74:
2025-09-08T00:02:04,921   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:04,921     117 |     struct unary_function
2025-09-08T00:02:04,921         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:08,578   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:08,578                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:08,578                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:08,578                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:08,578                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:08,579                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2025-09-08T00:02:08,579   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:08,579      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:08,579         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:08,580   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:08,580                    from ./base//sbml/conversion/SBMLConverter.h:52:
2025-09-08T00:02:08,580   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:08,580     117 |     struct unary_function
2025-09-08T00:02:08,580         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:08,811   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T00:02:08,811   ./base/sbml/conversion/SBMLConverter.cpp:67:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:02:08,812      67 |   if (&orig == NULL)
2025-09-08T00:02:08,812         |             ^
2025-09-08T00:02:08,812   ./base/sbml/conversion/SBMLConverter.cpp:62:51: note: ‘orig’ declared here
2025-09-08T00:02:08,812      62 | SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2025-09-08T00:02:08,812         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:02:08,815   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T00:02:08,815   ./base/sbml/conversion/SBMLConverter.cpp:103:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:02:08,815     103 |   if (&rhs == NULL)
2025-09-08T00:02:08,815         |            ^
2025-09-08T00:02:08,815   ./base/sbml/conversion/SBMLConverter.cpp:101:47: note: ‘rhs’ declared here
2025-09-08T00:02:08,815     101 | SBMLConverter::operator=(const SBMLConverter& rhs)
2025-09-08T00:02:08,815         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:02:09,233   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T00:02:09,234   ./base/sbml/conversion/SBMLConverter.cpp:67:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:09,234      67 |   if (&orig == NULL)
2025-09-08T00:02:09,234         |   ^~
2025-09-08T00:02:09,235   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T00:02:09,235   ./base/sbml/conversion/SBMLConverter.cpp:103:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:09,235     103 |   if (&rhs == NULL)
2025-09-08T00:02:09,235         |   ^~
2025-09-08T00:02:12,486   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:12,486                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:12,486                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:12,486                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:12,486                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:12,486                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2025-09-08T00:02:12,486                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2025-09-08T00:02:12,487   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:12,487      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:12,487         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:12,487   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T00:02:12,488                    from /usr/include/c++/14/vector:68,
2025-09-08T00:02:12,488                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2025-09-08T00:02:12,488   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:12,488     117 |     struct unary_function
2025-09-08T00:02:12,488         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:16,446   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:16,446                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:16,446                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:16,446                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:16,446                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:16,446                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75,
2025-09-08T00:02:16,446                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2025-09-08T00:02:16,446   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:16,446      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:16,447         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:16,447   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:16,447                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:02:16,448                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:02:16,448                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:74:
2025-09-08T00:02:16,448   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:16,448     117 |     struct unary_function
2025-09-08T00:02:16,448         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:16,694   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:16,694   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:102:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:02:16,694     102 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T00:02:16,694         |              ^
2025-09-08T00:02:16,695   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:100:80: note: ‘props’ declared here
2025-09-08T00:02:16,695     100 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:02:16,695         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:02:16,701   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2025-09-08T00:02:16,701   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:206:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2025-09-08T00:02:16,702     206 |           ->isSetMath(), &idsToSkip)
2025-09-08T00:02:16,702         |                          ^~~~~~~~~~
2025-09-08T00:02:16,702   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:143:10: note: ‘idsToSkip’ declared here
2025-09-08T00:02:16,702     143 |   IdList idsToSkip;
2025-09-08T00:02:16,702         |          ^~~~~~~~~
2025-09-08T00:02:17,144   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:17,145   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:102:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:17,145     102 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T00:02:17,145         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:02:20,898   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:20,898                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:20,898                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:20,898                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:20,899                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:20,899                    from ./base//sbml/conversion/SBMLIdConverter.h:77,
2025-09-08T00:02:20,899                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2025-09-08T00:02:20,899   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:20,899      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:20,899         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:20,900   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:20,900                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:02:20,900                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:02:20,900                    from ./base//sbml/conversion/SBMLIdConverter.h:76:
2025-09-08T00:02:20,900   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:20,900     117 |     struct unary_function
2025-09-08T00:02:20,900         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:21,144   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:21,144   ./base/sbml/conversion/SBMLIdConverter.cpp:105:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:02:21,144     105 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T00:02:21,144         |              ^
2025-09-08T00:02:21,144   ./base/sbml/conversion/SBMLIdConverter.cpp:103:64: note: ‘props’ declared here
2025-09-08T00:02:21,144     103 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:02:21,144         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:02:21,705   ./base/sbml/conversion/SBMLIdConverter.cpp:105:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:21,705     105 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T00:02:21,705         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:02:26,558   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:26,558                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:26,558                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:26,558                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:26,558                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:26,558                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:56,
2025-09-08T00:02:26,558                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2025-09-08T00:02:26,558   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:26,559      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:26,559         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:26,560   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:26,560                    from ./base//sbml/conversion/SBMLConverter.h:52:
2025-09-08T00:02:26,560   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:26,560     117 |     struct unary_function
2025-09-08T00:02:26,560         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:26,803   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T00:02:26,803   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:02:26,803      91 |   if (&rhs == NULL)
2025-09-08T00:02:26,803         |            ^
2025-09-08T00:02:26,804   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2025-09-08T00:02:26,804      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2025-09-08T00:02:26,804         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:02:26,807   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:26,807   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:124:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:02:26,807     124 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T00:02:26,807         |              ^
2025-09-08T00:02:26,807   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:122:72: note: ‘props’ declared here
2025-09-08T00:02:26,807     122 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:02:26,807         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:02:27,240   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T00:02:27,240   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:27,240      91 |   if (&rhs == NULL)
2025-09-08T00:02:27,240         |   ^~
2025-09-08T00:02:27,241   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:27,241   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:124:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:27,241     124 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T00:02:27,241         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:02:30,871   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:30,871                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:30,871                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:30,871                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:30,871                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:30,872                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:89,
2025-09-08T00:02:30,872                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2025-09-08T00:02:30,872   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:30,872      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:30,872         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:30,873   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:30,873                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:02:30,873                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:02:30,873                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:88:
2025-09-08T00:02:30,873   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:30,873     117 |     struct unary_function
2025-09-08T00:02:30,873         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:31,113   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:31,114   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:99:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:02:31,114      99 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T00:02:31,114         |              ^
2025-09-08T00:02:31,114   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:97:79: note: ‘props’ declared here
2025-09-08T00:02:31,114      97 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:02:31,114         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:02:31,533   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:99:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:31,533      99 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T00:02:31,534         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:02:35,213   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:35,213                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:35,213                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:35,213                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:35,213                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:35,213                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:73,
2025-09-08T00:02:35,213                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2025-09-08T00:02:35,214   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:35,214      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:35,214         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:35,214   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:35,215                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:02:35,215                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:02:35,215                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:72:
2025-09-08T00:02:35,215   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:35,215     117 |     struct unary_function
2025-09-08T00:02:35,215         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:35,531   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T00:02:35,531   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:02:35,532      89 |   if (&rhs == NULL)
2025-09-08T00:02:35,532         |            ^
2025-09-08T00:02:35,532   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2025-09-08T00:02:35,532      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2025-09-08T00:02:35,532         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:02:35,536   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:35,536   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:125:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:02:35,536     125 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T00:02:35,536         |              ^
2025-09-08T00:02:35,536   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:123:74: note: ‘props’ declared here
2025-09-08T00:02:35,536     123 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:02:35,536         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:02:36,035   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T00:02:36,036   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:36,036      89 |   if (&rhs == NULL)
2025-09-08T00:02:36,036         |   ^~
2025-09-08T00:02:36,036   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:36,036   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:125:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:36,037     125 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T00:02:36,037         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:02:40,970   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:40,970                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:40,970                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:40,970                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:40,970                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:40,970                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:65,
2025-09-08T00:02:40,970                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2025-09-08T00:02:40,970   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:40,970      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:40,970         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:40,971   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:40,971                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:02:40,971                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:02:40,972                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:64:
2025-09-08T00:02:40,972   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:40,972     117 |     struct unary_function
2025-09-08T00:02:40,972         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:41,214   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:41,214   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:106:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:02:41,214     106 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T00:02:41,214         |              ^
2025-09-08T00:02:41,214   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:104:76: note: ‘props’ declared here
2025-09-08T00:02:41,215     104 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:02:41,215         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:02:41,670   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:106:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:41,670     106 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T00:02:41,670         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:02:45,293   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:45,293                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:45,293                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:45,293                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:45,293                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:45,293                    from ./base//sbml/conversion/SBMLReactionConverter.h:59,
2025-09-08T00:02:45,293                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2025-09-08T00:02:45,293   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:45,293      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:45,293         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:45,294   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:45,294                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:02:45,294                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:02:45,295                    from ./base//sbml/conversion/SBMLReactionConverter.h:58:
2025-09-08T00:02:45,295   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:45,295     117 |     struct unary_function
2025-09-08T00:02:45,295         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:45,558   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:45,559   ./base/sbml/conversion/SBMLReactionConverter.cpp:108:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:02:45,559     108 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T00:02:45,559         |              ^
2025-09-08T00:02:45,559   ./base/sbml/conversion/SBMLReactionConverter.cpp:106:70: note: ‘props’ declared here
2025-09-08T00:02:45,559     106 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:02:45,559         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:02:46,076   ./base/sbml/conversion/SBMLReactionConverter.cpp:108:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:46,076     108 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T00:02:46,076         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:02:50,764   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:50,764                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:50,764                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:50,764                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:50,764                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:50,764                    from ./base//sbml/conversion/SBMLRuleConverter.h:88,
2025-09-08T00:02:50,764                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2025-09-08T00:02:50,764   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:50,765      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:50,765         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:50,765   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:50,766                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:02:50,766                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:02:50,766                    from ./base//sbml/conversion/SBMLRuleConverter.h:87:
2025-09-08T00:02:50,766   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:50,766     117 |     struct unary_function
2025-09-08T00:02:50,766         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:51,006   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:51,006   ./base/sbml/conversion/SBMLRuleConverter.cpp:103:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:02:51,006     103 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T00:02:51,007         |              ^
2025-09-08T00:02:51,007   ./base/sbml/conversion/SBMLRuleConverter.cpp:101:68: note: ‘props’ declared here
2025-09-08T00:02:51,007     101 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:02:51,007         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:02:51,874   ./base/sbml/conversion/SBMLRuleConverter.cpp:103:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:02:51,874     103 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T00:02:51,874         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:02:59,709   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:02:59,710                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:02:59,710                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:02:59,710                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:02:59,710                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:02:59,710                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:61,
2025-09-08T00:02:59,710                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2025-09-08T00:02:59,710   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:02:59,710      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:02:59,710         |                           ^~~~~~~~~~~~~~
2025-09-08T00:02:59,711   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:02:59,711                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:02:59,711                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:02:59,711                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:60:
2025-09-08T00:02:59,712   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:02:59,712     117 |     struct unary_function
2025-09-08T00:02:59,712         |            ^~~~~~~~~~~~~~
2025-09-08T00:02:59,976   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T00:02:59,976   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:02:59,977      86 |   if (&rhs == NULL)
2025-09-08T00:02:59,977         |            ^
2025-09-08T00:02:59,977   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2025-09-08T00:02:59,977      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2025-09-08T00:02:59,977         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:02:59,980   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:02:59,981   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:121:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:02:59,981     121 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T00:02:59,981         |              ^
2025-09-08T00:02:59,981   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:119:74: note: ‘props’ declared here
2025-09-08T00:02:59,981     119 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:02:59,981         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:03:00,391   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T00:03:00,391   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:00,392      86 |   if (&rhs == NULL)
2025-09-08T00:03:00,392         |   ^~
2025-09-08T00:03:00,392   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:03:00,392   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:121:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:00,393     121 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T00:03:00,393         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:03:03,737   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:03,737                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:03,737                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:03,737                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:03:03,737                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:03:03,737                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70,
2025-09-08T00:03:03,737                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2025-09-08T00:03:03,738   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:03,738      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:03,738         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:03,738   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:03,739                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:03:03,739                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:03:03,739                    from ./base//sbml/conversion/SBMLUnitsConverter.h:69:
2025-09-08T00:03:03,739   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:03,739     117 |     struct unary_function
2025-09-08T00:03:03,739         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:04,029   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T00:03:04,029   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:03:04,029      91 |   if (&rhs == NULL)
2025-09-08T00:03:04,029         |            ^
2025-09-08T00:03:04,030   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2025-09-08T00:03:04,030      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2025-09-08T00:03:04,030         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:04,033   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:03:04,033   ./base/sbml/conversion/SBMLUnitsConverter.cpp:126:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:03:04,034     126 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T00:03:04,034         |              ^
2025-09-08T00:03:04,034   ./base/sbml/conversion/SBMLUnitsConverter.cpp:124:67: note: ‘props’ declared here
2025-09-08T00:03:04,034     124 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:03:04,034         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:03:04,711   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T00:03:04,711   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:04,711      91 |   if (&rhs == NULL)
2025-09-08T00:03:04,712         |   ^~
2025-09-08T00:03:04,712   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:03:04,712   ./base/sbml/conversion/SBMLUnitsConverter.cpp:126:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:04,712     126 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T00:03:04,712         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:03:11,845   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:11,845                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:11,845                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:11,845                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:03:11,845                    from ./base/sbml/extension/ASTBasePlugin.cpp:40:
2025-09-08T00:03:11,846   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:11,846      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:11,846         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:11,846   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:11,847                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:03:11,847                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:03:11,847                    from ./base//sbml/extension/ASTBasePlugin.h:50:
2025-09-08T00:03:11,847   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:11,847     117 |     struct unary_function
2025-09-08T00:03:11,847         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:16,112   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:16,112                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:16,112                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:16,112                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:03:16,112                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:03:16,112                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:03:16,113                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2025-09-08T00:03:16,113   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:16,113      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:16,113         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:16,114   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:16,114                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:03:16,114                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:03:16,114                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:43,
2025-09-08T00:03:16,114                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2025-09-08T00:03:16,114   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:16,114     117 |     struct unary_function
2025-09-08T00:03:16,114         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:19,773   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:19,773                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:19,774                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:19,774                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T00:03:19,774                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2025-09-08T00:03:19,774   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:19,774      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:19,774         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:19,775   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:19,775                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:03:19,775                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:03:19,775                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2025-09-08T00:03:19,775   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:19,775     117 |     struct unary_function
2025-09-08T00:03:19,775         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:20,025   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T00:03:20,025   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:03:20,025     119 |   if (&attributes == NULL) return;
2025-09-08T00:03:20,025         |                   ^
2025-09-08T00:03:20,025   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2025-09-08T00:03:20,026     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2025-09-08T00:03:20,026         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:03:20,027   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:03:20,027   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:03:20,027     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:20,027         |                   ^
2025-09-08T00:03:20,027   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2025-09-08T00:03:20,027     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T00:03:20,028         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:03:20,028   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T00:03:20,028     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:20,028         |                                                  ^
2025-09-08T00:03:20,028   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2025-09-08T00:03:20,028     133 |                                     const ExpectedAttributes& expectedAttributes)
2025-09-08T00:03:20,028         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:03:20,031   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2025-09-08T00:03:20,031   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:03:20,032     169 |   if (&stream == NULL) return;
2025-09-08T00:03:20,032         |               ^
2025-09-08T00:03:20,032   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2025-09-08T00:03:20,032     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2025-09-08T00:03:20,032         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:03:20,463   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:20,463     169 |   if (&stream == NULL) return;
2025-09-08T00:03:20,463         |   ^~
2025-09-08T00:03:20,467   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T00:03:20,467   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:20,467     119 |   if (&attributes == NULL) return;
2025-09-08T00:03:20,467         |   ^~
2025-09-08T00:03:20,468   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:03:20,468   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:20,468     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:20,468         |                   ^
2025-09-08T00:03:20,469   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:20,469     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:20,469         |                                                  ^
2025-09-08T00:03:24,037   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:24,037                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:24,037                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:24,037                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T00:03:24,037                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:53,
2025-09-08T00:03:24,038                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2025-09-08T00:03:24,038   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:24,038      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:24,038         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:24,039   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:24,039                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:03:24,039                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:03:24,039                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2025-09-08T00:03:24,039   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:24,039     117 |     struct unary_function
2025-09-08T00:03:24,039         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:24,295   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:03:24,295   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:03:24,295      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:24,295         |                   ^
2025-09-08T00:03:24,295   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2025-09-08T00:03:24,295      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2025-09-08T00:03:24,295         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:03:24,296   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T00:03:24,296      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:24,296         |                                                  ^
2025-09-08T00:03:24,296   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2025-09-08T00:03:24,296      89 |                                           const ExpectedAttributes& expectedAttributes)
2025-09-08T00:03:24,296         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:03:24,707   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:24,707      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:24,707         |                   ^
2025-09-08T00:03:24,707   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:24,707      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:24,707         |                                                  ^
2025-09-08T00:03:27,724   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:27,724                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:27,724                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:27,724                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:03:27,724                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:03:27,724                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2025-09-08T00:03:27,724   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:27,725      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:27,725         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:27,725   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:27,725                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:03:27,726                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:03:27,726                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T00:03:27,726   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:27,726     117 |     struct unary_function
2025-09-08T00:03:27,726         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:28,017   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T00:03:28,017   ./base/sbml/extension/SBMLExtension.cpp:233:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T00:03:28,017     233 |   if (&extPoint == NULL) return NULL;
2025-09-08T00:03:28,017         |                 ^
2025-09-08T00:03:28,017   ./base/sbml/extension/SBMLExtension.cpp:231:65: note: ‘extPoint’ declared here
2025-09-08T00:03:28,017     231 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2025-09-08T00:03:28,018         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:03:28,022   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T00:03:28,022   ./base/sbml/extension/SBMLExtension.cpp:304:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:03:28,022     304 |   if(&uri == NULL) return false;
2025-09-08T00:03:28,022         |           ^
2025-09-08T00:03:28,022   ./base/sbml/extension/SBMLExtension.cpp:302:47: note: ‘uri’ declared here
2025-09-08T00:03:28,022     302 | SBMLExtension::isSupported(const std::string& uri) const
2025-09-08T00:03:28,022         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:28,541   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T00:03:28,541   ./base/sbml/extension/SBMLExtension.cpp:233:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:28,541     233 |   if (&extPoint == NULL) return NULL;
2025-09-08T00:03:28,541         |   ^~
2025-09-08T00:03:28,554   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T00:03:28,554   ./base/sbml/extension/SBMLExtension.cpp:304:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:28,554     304 |   if(&uri == NULL) return false;
2025-09-08T00:03:28,555         |   ^~
2025-09-08T00:03:34,701   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:34,701                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:34,701                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:34,701                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:03:34,702                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:03:34,702                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:03:34,702                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2025-09-08T00:03:34,702   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:34,702      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:34,702         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:34,702   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:34,702                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:03:34,702                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:03:34,702                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2025-09-08T00:03:34,703   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:34,703     117 |     struct unary_function
2025-09-08T00:03:34,703         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:38,367   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:38,367                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:38,367                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:38,367                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:03:38,367                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:03:38,367                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:03:38,367                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2025-09-08T00:03:38,368   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:38,368      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:38,368         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:38,368   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:38,369                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:03:38,369                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:03:38,369                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T00:03:38,369   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:38,369     117 |     struct unary_function
2025-09-08T00:03:38,369         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:38,675   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T00:03:38,675   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:03:38,675     103 |   if (&orig != NULL)
2025-09-08T00:03:38,675         |             ^
2025-09-08T00:03:38,675   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2025-09-08T00:03:38,676     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2025-09-08T00:03:38,676         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:03:38,755   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T00:03:38,755   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:03:38,755     221 |   if(&uri == NULL) return NULL;
2025-09-08T00:03:38,755         |           ^
2025-09-08T00:03:38,756   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2025-09-08T00:03:38,756     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2025-09-08T00:03:38,756         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:38,769   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T00:03:38,769   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T00:03:38,769     245 |   if (&extPoint != NULL)
2025-09-08T00:03:38,769         |                 ^
2025-09-08T00:03:38,770   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2025-09-08T00:03:38,770     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2025-09-08T00:03:38,770         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:03:38,773   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T00:03:38,774   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:03:38,774     272 |   if (&uri != NULL)
2025-09-08T00:03:38,774         |            ^
2025-09-08T00:03:38,774   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2025-09-08T00:03:38,774     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2025-09-08T00:03:38,774         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:38,776   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T00:03:38,777   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T00:03:38,777     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T00:03:38,777         |                ^
2025-09-08T00:03:38,777   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2025-09-08T00:03:38,777     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T00:03:38,777         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:03:38,777   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:03:38,778     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T00:03:38,778         |                                ^
2025-09-08T00:03:38,778   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2025-09-08T00:03:38,778     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T00:03:38,778         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:38,780   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T00:03:38,780   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T00:03:38,780     347 |   if (&extPoint == NULL) return 0;
2025-09-08T00:03:38,780         |                 ^
2025-09-08T00:03:38,781   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2025-09-08T00:03:38,781     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2025-09-08T00:03:38,781         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:03:38,783   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2025-09-08T00:03:38,783   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T00:03:38,783     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2025-09-08T00:03:38,783         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T00:03:38,783   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T00:03:39,515   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T00:03:39,515   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:39,515     272 |   if (&uri != NULL)
2025-09-08T00:03:39,515         |   ^~
2025-09-08T00:03:39,520   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T00:03:39,520   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:39,520     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T00:03:39,521         |                ^
2025-09-08T00:03:39,521   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:39,521     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T00:03:39,521         |                                ^
2025-09-08T00:03:39,522   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T00:03:39,522   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:39,522     245 |   if (&extPoint != NULL)
2025-09-08T00:03:39,522         |   ^~
2025-09-08T00:03:39,523   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T00:03:39,524   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:39,524     347 |   if (&extPoint == NULL) return 0;
2025-09-08T00:03:39,524         |   ^~
2025-09-08T00:03:39,531   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T00:03:39,532   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:39,532     221 |   if(&uri == NULL) return NULL;
2025-09-08T00:03:39,532         |   ^~
2025-09-08T00:03:39,536   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T00:03:39,536   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:39,536     103 |   if (&orig != NULL)
2025-09-08T00:03:39,536         |   ^~
2025-09-08T00:03:43,689   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T00:03:43,689   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T00:03:43,689      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:03:43,689         |            ^
2025-09-08T00:03:43,689   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:44: note: ‘lhs’ declared here
2025-09-08T00:03:43,690      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T00:03:43,690         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:43,690   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:03:43,690      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:03:43,690         |                            ^
2025-09-08T00:03:43,690   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:76: note: ‘rhs’ declared here
2025-09-08T00:03:43,690      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T00:03:43,691         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:43,692   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T00:03:43,692   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T00:03:43,692     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:03:43,692         |            ^
2025-09-08T00:03:43,693   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:43: note: ‘lhs’ declared here
2025-09-08T00:03:43,693     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T00:03:43,693         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:43,693   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:03:43,693     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:03:43,693         |                            ^
2025-09-08T00:03:43,693   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:75: note: ‘rhs’ declared here
2025-09-08T00:03:43,694     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T00:03:43,694         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:43,964   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T00:03:43,964   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:43,964      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:03:43,965         |            ^
2025-09-08T00:03:43,965   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:43,965      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:03:43,965         |                            ^
2025-09-08T00:03:43,966   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T00:03:43,967   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:43,967     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:03:43,967         |            ^
2025-09-08T00:03:43,967   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:43,967     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:03:43,967         |                            ^
2025-09-08T00:03:47,049   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:47,049                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:47,050                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:47,050                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T00:03:47,050                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2025-09-08T00:03:47,050   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:47,050      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:47,050         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:47,051   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:47,051                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:03:47,051                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:03:47,051                    from ./base//sbml/extension/SBasePlugin.h:252:
2025-09-08T00:03:47,051   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:47,051     117 |     struct unary_function
2025-09-08T00:03:47,051         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:47,353   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:03:47,353   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:03:47,353     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:47,353         |                   ^
2025-09-08T00:03:47,354   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2025-09-08T00:03:47,354     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T00:03:47,354         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:03:47,354   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T00:03:47,354     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:47,354         |                                                  ^
2025-09-08T00:03:47,354   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2025-09-08T00:03:47,355     576 |                              const ExpectedAttributes& expectedAttributes)
2025-09-08T00:03:47,355         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:03:47,358   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T00:03:47,358   ./base/sbml/extension/SBasePlugin.cpp:683:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:03:47,358     683 |   if(&element == NULL) return;
2025-09-08T00:03:47,358         |               ^
2025-09-08T00:03:47,358   ./base/sbml/extension/SBasePlugin.cpp:678:51: note: ‘element’ declared here
2025-09-08T00:03:47,358     678 | SBasePlugin::logUnknownElement(const std::string &element,
2025-09-08T00:03:47,358         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:03:47,365   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T00:03:47,365   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:03:47,365     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:03:47,365         |                  ^
2025-09-08T00:03:47,366   ./base/sbml/extension/SBasePlugin.cpp:710:53: note: ‘attribute’ declared here
2025-09-08T00:03:47,366     710 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2025-09-08T00:03:47,366         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:03:47,366   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:03:47,366     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:03:47,366         |                                      ^
2025-09-08T00:03:47,367   ./base/sbml/extension/SBasePlugin.cpp:714:53: note: ‘element’ declared here
2025-09-08T00:03:47,367     714 |                                  const std::string& element)
2025-09-08T00:03:47,367         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:03:47,373   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T00:03:47,373   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:03:47,373     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:03:47,373         |                  ^
2025-09-08T00:03:47,374   ./base/sbml/extension/SBasePlugin.cpp:744:48: note: ‘attribute’ declared here
2025-09-08T00:03:47,374     744 | SBasePlugin::logEmptyString(const std::string &attribute,
2025-09-08T00:03:47,374         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:03:47,374   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:03:47,374     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:03:47,374         |                                      ^
2025-09-08T00:03:47,375   ./base/sbml/extension/SBasePlugin.cpp:748:56: note: ‘element’ declared here
2025-09-08T00:03:47,375     748 |                                     const std::string& element)
2025-09-08T00:03:47,375         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:03:47,840   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T00:03:47,840   ./base/sbml/extension/SBasePlugin.cpp:683:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:47,840     683 |   if(&element == NULL) return;
2025-09-08T00:03:47,840         |   ^~
2025-09-08T00:03:47,841   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T00:03:47,841   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:47,841     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:03:47,841         |                  ^
2025-09-08T00:03:47,842   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:47,842     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:03:47,842         |                                      ^
2025-09-08T00:03:47,843   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T00:03:47,843   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:47,843     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:03:47,843         |                  ^
2025-09-08T00:03:47,843   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:47,843     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:03:47,843         |                                      ^
2025-09-08T00:03:47,845   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:03:47,846   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:47,846     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:47,846         |                   ^
2025-09-08T00:03:47,846   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:47,846     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:03:47,846         |                                                  ^
2025-09-08T00:03:52,406   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:52,406                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:52,406                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:52,406                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:03:52,406                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2025-09-08T00:03:52,406   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:52,406      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:52,406         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:52,407   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:52,407                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:03:52,407                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:03:52,407                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T00:03:52,408   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:52,408     117 |     struct unary_function
2025-09-08T00:03:52,408         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:52,642   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2025-09-08T00:03:52,642   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:03:52,642     148 |   if (&uri == NULL) return false;
2025-09-08T00:03:52,642         |            ^
2025-09-08T00:03:52,642   ./base/sbml/extension/SBasePluginCreatorBase.cpp:146:56: note: ‘uri’ declared here
2025-09-08T00:03:52,642     146 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2025-09-08T00:03:52,642         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:03:53,072   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:53,072     148 |   if (&uri == NULL) return false;
2025-09-08T00:03:53,072         |   ^~
2025-09-08T00:03:56,661   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:03:56,661                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:03:56,661                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:03:56,661                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:03:56,662                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:03:56,662                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:03:56,662                    from ./base/sbml/math/ASTBase.cpp:43:
2025-09-08T00:03:56,662   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:56,662      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:03:56,662         |                           ^~~~~~~~~~~~~~
2025-09-08T00:03:56,663   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:03:56,663                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:03:56,663                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:03:56,663                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:03:56,663                    from ./base/sbml/math/ASTBase.cpp:41:
2025-09-08T00:03:56,663   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:56,663     117 |     struct unary_function
2025-09-08T00:03:56,663         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:56,948   ./base/sbml/math/ASTBase.cpp:67:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:56,948      67 | struct CloneASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2025-09-08T00:03:56,948         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:03:56,948   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:56,948     117 |     struct unary_function
2025-09-08T00:03:56,948         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:56,949   ./base/sbml/math/ASTBase.cpp:75:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:56,949      75 | struct AssignASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2025-09-08T00:03:56,950         |                                       ^~~~~~~~~~~~~~
2025-09-08T00:03:56,950   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:56,950     117 |     struct unary_function
2025-09-08T00:03:56,950         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:56,951   ./base/sbml/math/ASTBase.cpp:86:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:03:56,951      86 | struct CloneASTPluginEntityNoParent : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2025-09-08T00:03:56,951         |                                              ^~~~~~~~~~~~~~
2025-09-08T00:03:56,951   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:03:56,951     117 |     struct unary_function
2025-09-08T00:03:56,951         |            ^~~~~~~~~~~~~~
2025-09-08T00:03:57,013   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2025-09-08T00:03:57,014   ./base/sbml/math/ASTBase.cpp:1467:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:03:57,014    1467 |   if (&stream == NULL) return;
2025-09-08T00:03:57,014         |               ^
2025-09-08T00:03:57,014   ./base/sbml/math/ASTBase.cpp:1465:36: note: ‘stream’ declared here
2025-09-08T00:03:57,014    1465 |                 , XMLOutputStream& stream ) const
2025-09-08T00:03:57,014         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:03:57,018   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2025-09-08T00:03:57,018   ./base/sbml/math/ASTBase.cpp:1498:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2025-09-08T00:03:57,019    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:03:57,019         |                 ^
2025-09-08T00:03:57,019   ./base/sbml/math/ASTBase.cpp:1494:50: note: ‘mantissa’ declared here
2025-09-08T00:03:57,019    1494 | ASTBase::writeENotation (  const std::string&    mantissa
2025-09-08T00:03:57,019         |                            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:03:57,019   ./base/sbml/math/ASTBase.cpp:1498:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2025-09-08T00:03:57,019    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:03:57,020         |                                      ^
2025-09-08T00:03:57,020   ./base/sbml/math/ASTBase.cpp:1495:56: note: ‘exponent’ declared here
2025-09-08T00:03:57,020    1495 |                                , const std::string&    exponent
2025-09-08T00:03:57,020         |                                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:03:57,020   ./base/sbml/math/ASTBase.cpp:1498:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:03:57,020    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:03:57,020         |                                                         ^
2025-09-08T00:03:57,021   ./base/sbml/math/ASTBase.cpp:1496:36: note: ‘stream’ declared here
2025-09-08T00:03:57,021    1496 |                 , XMLOutputStream& stream ) const
2025-09-08T00:03:57,021         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:03:57,025   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2025-09-08T00:03:57,025   ./base/sbml/math/ASTBase.cpp:1511:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:03:57,025    1511 |   if (&stream == NULL) return;
2025-09-08T00:03:57,025         |               ^
2025-09-08T00:03:57,025   ./base/sbml/math/ASTBase.cpp:1509:44: note: ‘stream’ declared here
2025-09-08T00:03:57,026    1509 | ASTBase::writeNegInfinity(XMLOutputStream& stream) const
2025-09-08T00:03:57,026         |                           ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:03:57,028   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2025-09-08T00:03:57,028   ./base/sbml/math/ASTBase.cpp:1522:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:03:57,028    1522 |   if (&stream == NULL) return;
2025-09-08T00:03:57,028         |               ^
2025-09-08T00:03:57,028   ./base/sbml/math/ASTBase.cpp:1520:41: note: ‘stream’ declared here
2025-09-08T00:03:57,028    1520 | ASTBase::writeConstant(XMLOutputStream& stream, const std::string & name) const
2025-09-08T00:03:57,028         |                        ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:03:57,030   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2025-09-08T00:03:57,030   ./base/sbml/math/ASTBase.cpp:1532:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:03:57,030    1532 |   if (&stream == NULL) return;
2025-09-08T00:03:57,030         |               ^
2025-09-08T00:03:57,030   ./base/sbml/math/ASTBase.cpp:1530:49: note: ‘stream’ declared here
2025-09-08T00:03:57,030    1530 | ASTBase::writeStartEndElement (XMLOutputStream& stream) const
2025-09-08T00:03:57,030         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:03:57,046   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T00:03:57,046   ./base/sbml/math/ASTBase.cpp:1812:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:03:57,046    1812 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T00:03:57,046         |                ^
2025-09-08T00:03:57,047   ./base/sbml/math/ASTBase.cpp:1809:60: note: ‘element’ declared here
2025-09-08T00:03:57,047    1809 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T00:03:57,047         |                                            ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:03:57,047   ./base/sbml/math/ASTBase.cpp:1812:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:03:57,047    1812 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T00:03:57,047         |                                   ^
2025-09-08T00:03:57,047   ./base/sbml/math/ASTBase.cpp:1809:36: note: ‘stream’ declared here
2025-09-08T00:03:57,048    1809 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T00:03:57,048         |                    ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:03:57,600   ./base/sbml/math/ASTBase.cpp:1812:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:57,600    1812 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T00:03:57,600         |                                   ^
2025-09-08T00:03:57,601   ./base/sbml/math/ASTBase.cpp:1812:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:57,601    1812 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T00:03:57,601         |                ^
2025-09-08T00:03:57,626   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2025-09-08T00:03:57,626   ./base/sbml/math/ASTBase.cpp:1467:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:57,626    1467 |   if (&stream == NULL) return;
2025-09-08T00:03:57,626         |   ^~
2025-09-08T00:03:57,628   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2025-09-08T00:03:57,628   ./base/sbml/math/ASTBase.cpp:1498:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:57,628    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:03:57,628         |                 ^
2025-09-08T00:03:57,628   ./base/sbml/math/ASTBase.cpp:1498:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:57,629    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:03:57,629         |                                      ^
2025-09-08T00:03:57,629   ./base/sbml/math/ASTBase.cpp:1498:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:57,629    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:03:57,629         |                                              ^
2025-09-08T00:03:57,630   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2025-09-08T00:03:57,630   ./base/sbml/math/ASTBase.cpp:1511:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:57,631    1511 |   if (&stream == NULL) return;
2025-09-08T00:03:57,631         |   ^~
2025-09-08T00:03:57,634   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2025-09-08T00:03:57,634   ./base/sbml/math/ASTBase.cpp:1522:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:57,634    1522 |   if (&stream == NULL) return;
2025-09-08T00:03:57,634         |   ^~
2025-09-08T00:03:57,634   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2025-09-08T00:03:57,635   ./base/sbml/math/ASTBase.cpp:1532:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:03:57,635    1532 |   if (&stream == NULL) return;
2025-09-08T00:03:57,635         |   ^~
2025-09-08T00:04:04,345   ./base/sbml/math/ASTBinaryFunctionNode.cpp: In member function ‘virtual void ASTBinaryFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:04:04,345   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:04:04,345     326 |   if (&stream == NULL) return;
2025-09-08T00:04:04,345         |               ^
2025-09-08T00:04:04,345   ./base/sbml/math/ASTBinaryFunctionNode.cpp:324:47: note: ‘stream’ declared here
2025-09-08T00:04:04,346     324 | ASTBinaryFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:04:04,346         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:04:04,698   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:04,698     326 |   if (&stream == NULL) return;
2025-09-08T00:04:04,698         |   ^~
2025-09-08T00:04:08,051   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:04:08,051                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:04:08,051                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:04:08,052                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:04:08,052                    from ./base/sbml/math/ASTCSymbol.cpp:39:
2025-09-08T00:04:08,052   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:04:08,052      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:04:08,052         |                           ^~~~~~~~~~~~~~
2025-09-08T00:04:08,053   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:04:08,053                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:04:08,053                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:04:08,053                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:04:08,053                    from ./base//sbml/math/ASTCSymbol.h:42,
2025-09-08T00:04:08,053                    from ./base/sbml/math/ASTCSymbol.cpp:36:
2025-09-08T00:04:08,053   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:04:08,053     117 |     struct unary_function
2025-09-08T00:04:08,053         |            ^~~~~~~~~~~~~~
2025-09-08T00:04:12,562   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:04:12,562   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:04:12,562      54 |   if (&s == NULL) return s;
2025-09-08T00:04:12,563         |          ^
2025-09-08T00:04:12,563   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T00:04:12,563      52 | trim (const string& s)
2025-09-08T00:04:12,563         |       ~~~~~~~~~~~~~~^
2025-09-08T00:04:12,941   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:12,941      54 |   if (&s == NULL) return s;
2025-09-08T00:04:12,941         |   ^~
2025-09-08T00:04:15,934   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:04:15,934   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:04:15,934      54 |   if (&s == NULL) return s;
2025-09-08T00:04:15,934         |          ^
2025-09-08T00:04:15,934   ./base/sbml/math/ASTCSymbolDelayNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T00:04:15,935      52 | trim (const string& s)
2025-09-08T00:04:15,935         |       ~~~~~~~~~~~~~~^
2025-09-08T00:04:15,946   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2025-09-08T00:04:15,946   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:04:15,946     273 |   if (&stream == NULL) return;
2025-09-08T00:04:15,947         |               ^
2025-09-08T00:04:15,947   ./base/sbml/math/ASTCSymbolDelayNode.cpp:271:45: note: ‘stream’ declared here
2025-09-08T00:04:15,947     271 | ASTCSymbolDelayNode::write(XMLOutputStream& stream) const
2025-09-08T00:04:15,947         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:04:16,318   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:04:16,318   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:16,318      54 |   if (&s == NULL) return s;
2025-09-08T00:04:16,318         |   ^~
2025-09-08T00:04:16,322   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2025-09-08T00:04:16,322   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:16,322     273 |   if (&stream == NULL) return;
2025-09-08T00:04:16,322         |   ^~
2025-09-08T00:04:19,518   ./base/sbml/math/ASTCSymbolTimeNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:04:19,518   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:04:19,518      54 |   if (&s == NULL) return s;
2025-09-08T00:04:19,518         |          ^
2025-09-08T00:04:19,519   ./base/sbml/math/ASTCSymbolTimeNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T00:04:19,519      52 | trim (const string& s)
2025-09-08T00:04:19,519         |       ~~~~~~~~~~~~~~^
2025-09-08T00:04:19,892   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:19,893      54 |   if (&s == NULL) return s;
2025-09-08T00:04:19,893         |   ^~
2025-09-08T00:04:22,745   ./base/sbml/math/ASTCiFunctionNode.cpp: In member function ‘virtual void ASTCiFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:04:22,745   ./base/sbml/math/ASTCiFunctionNode.cpp:216:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:04:22,745     216 |   if (&stream == NULL) return;
2025-09-08T00:04:22,745         |               ^
2025-09-08T00:04:22,745   ./base/sbml/math/ASTCiFunctionNode.cpp:214:43: note: ‘stream’ declared here
2025-09-08T00:04:22,746     214 | ASTCiFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:04:22,746         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:04:23,097   ./base/sbml/math/ASTCiFunctionNode.cpp:216:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:23,098     216 |   if (&stream == NULL) return;
2025-09-08T00:04:23,098         |   ^~
2025-09-08T00:04:25,732   ./base/sbml/math/ASTCiNumberNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:04:25,732   ./base/sbml/math/ASTCiNumberNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:04:25,733      54 |   if (&s == NULL) return s;
2025-09-08T00:04:25,733         |          ^
2025-09-08T00:04:25,733   ./base/sbml/math/ASTCiNumberNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T00:04:25,733      52 | trim (const string& s)
2025-09-08T00:04:25,733         |       ~~~~~~~~~~~~~~^
2025-09-08T00:04:26,110   ./base/sbml/math/ASTCiNumberNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:26,110      54 |   if (&s == NULL) return s;
2025-09-08T00:04:26,111         |   ^~
2025-09-08T00:04:29,070   ./base/sbml/math/ASTCnBase.cpp: In member function ‘int ASTCnBase::setUnits(const std::string&)’:
2025-09-08T00:04:29,070   ./base/sbml/math/ASTCnBase.cpp:116:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T00:04:29,070     116 |   if (&(units) == NULL)
2025-09-08T00:04:29,070         |                ^
2025-09-08T00:04:29,070   ./base/sbml/math/ASTCnBase.cpp:114:40: note: ‘units’ declared here
2025-09-08T00:04:29,070     114 | ASTCnBase::setUnits(const std::string& units)
2025-09-08T00:04:29,071         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:04:29,435   ./base/sbml/math/ASTCnBase.cpp:116:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:29,435     116 |   if (&(units) == NULL)
2025-09-08T00:04:29,436         |   ^~
2025-09-08T00:04:44,918   ./base/sbml/math/ASTConstantNumberNode.cpp: In member function ‘virtual void ASTConstantNumberNode::write(XMLOutputStream&) const’:
2025-09-08T00:04:44,918   ./base/sbml/math/ASTConstantNumberNode.cpp:179:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:04:44,918     179 |   if (&stream == NULL) return;
2025-09-08T00:04:44,918         |               ^
2025-09-08T00:04:44,918   ./base/sbml/math/ASTConstantNumberNode.cpp:177:47: note: ‘stream’ declared here
2025-09-08T00:04:44,918     177 | ASTConstantNumberNode::write(XMLOutputStream& stream) const
2025-09-08T00:04:44,919         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:04:45,257   ./base/sbml/math/ASTConstantNumberNode.cpp:179:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:45,257     179 |   if (&stream == NULL) return;
2025-09-08T00:04:45,257         |   ^~
2025-09-08T00:04:48,343   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:04:48,344                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:04:48,344                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:04:48,344                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:04:48,344                    from ./base/sbml/math/ASTFunction.cpp:38:
2025-09-08T00:04:48,344   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:04:48,344      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:04:48,344         |                           ^~~~~~~~~~~~~~
2025-09-08T00:04:48,345   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:04:48,345                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:04:48,345                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:04:48,345                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:04:48,345                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T00:04:48,345                    from ./base/sbml/math/ASTFunction.cpp:36:
2025-09-08T00:04:48,346   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:04:48,346     117 |     struct unary_function
2025-09-08T00:04:48,346         |            ^~~~~~~~~~~~~~
2025-09-08T00:04:48,581   ./base/sbml/math/ASTFunction.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:04:48,581   ./base/sbml/math/ASTFunction.cpp:148:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:04:48,581     148 |   if (&s == NULL) return s;
2025-09-08T00:04:48,581         |          ^
2025-09-08T00:04:48,582   ./base/sbml/math/ASTFunction.cpp:146:21: note: ‘s’ declared here
2025-09-08T00:04:48,582     146 | trim (const string& s)
2025-09-08T00:04:48,582         |       ~~~~~~~~~~~~~~^
2025-09-08T00:04:49,310   ./base/sbml/math/ASTFunction.cpp:148:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:49,310     148 |   if (&s == NULL) return s;
2025-09-08T00:04:49,310         |   ^~
2025-09-08T00:04:56,932   ./base/sbml/math/ASTFunctionBase.cpp: In member function ‘void ASTFunctionBase::writeArgumentsOfType(XMLOutputStream&, int) const’:
2025-09-08T00:04:56,932   ./base/sbml/math/ASTFunctionBase.cpp:349:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:04:56,932     349 |   if (&stream == NULL) return;
2025-09-08T00:04:56,932         |               ^
2025-09-08T00:04:56,932   ./base/sbml/math/ASTFunctionBase.cpp:347:56: note: ‘stream’ declared here
2025-09-08T00:04:56,933     347 | ASTFunctionBase::writeArgumentsOfType(XMLOutputStream& stream, int type) const
2025-09-08T00:04:56,933         |                                       ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:04:57,372   ./base/sbml/math/ASTFunctionBase.cpp:349:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:04:57,372     349 |   if (&stream == NULL) return;
2025-09-08T00:04:57,372         |   ^~
2025-09-08T00:05:00,630   ./base/sbml/math/ASTLambdaFunctionNode.cpp: In member function ‘virtual void ASTLambdaFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:05:00,630   ./base/sbml/math/ASTLambdaFunctionNode.cpp:324:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:05:00,630     324 |   if (&stream == NULL) return;
2025-09-08T00:05:00,630         |               ^
2025-09-08T00:05:00,630   ./base/sbml/math/ASTLambdaFunctionNode.cpp:322:47: note: ‘stream’ declared here
2025-09-08T00:05:00,631     322 | ASTLambdaFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:05:00,631         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:05:01,006   ./base/sbml/math/ASTLambdaFunctionNode.cpp:324:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:01,006     324 |   if (&stream == NULL) return;
2025-09-08T00:05:01,006         |   ^~
2025-09-08T00:05:03,650   ./base/sbml/math/ASTNaryFunctionNode.cpp: In member function ‘virtual void ASTNaryFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:05:03,650   ./base/sbml/math/ASTNaryFunctionNode.cpp:373:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:05:03,650     373 |   if (&stream == NULL) return;
2025-09-08T00:05:03,650         |               ^
2025-09-08T00:05:03,650   ./base/sbml/math/ASTNaryFunctionNode.cpp:371:45: note: ‘stream’ declared here
2025-09-08T00:05:03,651     371 | ASTNaryFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:05:03,651         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:05:04,019   ./base/sbml/math/ASTNaryFunctionNode.cpp:373:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:04,020     373 |   if (&stream == NULL) return;
2025-09-08T00:05:04,020         |   ^~
2025-09-08T00:05:07,612   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:05:07,612                    from ./base//sbml/Model.h:426,
2025-09-08T00:05:07,612                    from ./base/sbml/math/ASTNode.cpp:41:
2025-09-08T00:05:07,612   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:05:07,612      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:05:07,613         |                           ^~~~~~~~~~~~~~
2025-09-08T00:05:07,613   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:05:07,613                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:05:07,614                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:05:07,614                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:05:07,614                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T00:05:07,614                    from ./base//sbml/math/ASTNode.h:147,
2025-09-08T00:05:07,614                    from ./base/sbml/math/ASTNode.cpp:34:
2025-09-08T00:05:07,614   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:05:07,614     117 |     struct unary_function
2025-09-08T00:05:07,614         |            ^~~~~~~~~~~~~~
2025-09-08T00:05:07,897   ./base/sbml/math/ASTNode.cpp:141:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:05:07,897     141 | struct DeleteASTPluginEntity : public unary_function<ASTBasePlugin*, void>
2025-09-08T00:05:07,897         |                                       ^~~~~~~~~~~~~~
2025-09-08T00:05:07,898   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:05:07,898     117 |     struct unary_function
2025-09-08T00:05:07,898         |            ^~~~~~~~~~~~~~
2025-09-08T00:05:17,264   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:05:17,264                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:05:17,264                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:05:17,264                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:05:17,265                    from ./base/sbml/math/ASTNumber.cpp:38:
2025-09-08T00:05:17,265   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:05:17,265      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:05:17,265         |                           ^~~~~~~~~~~~~~
2025-09-08T00:05:17,265   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:05:17,266                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:05:17,266                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:05:17,266                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:05:17,266                    from ./base//sbml/math/ASTNumber.h:42,
2025-09-08T00:05:17,266                    from ./base/sbml/math/ASTNumber.cpp:36:
2025-09-08T00:05:17,266   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:05:17,266     117 |     struct unary_function
2025-09-08T00:05:17,266         |            ^~~~~~~~~~~~~~
2025-09-08T00:05:23,285   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp: In member function ‘virtual void ASTPiecewiseFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:05:23,285   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:05:23,285     714 |   if (&stream == NULL) return;
2025-09-08T00:05:23,285         |               ^
2025-09-08T00:05:23,285   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:712:50: note: ‘stream’ declared here
2025-09-08T00:05:23,285     712 | ASTPiecewiseFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:05:23,285         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:05:23,677   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:23,677     714 |   if (&stream == NULL) return;
2025-09-08T00:05:23,677         |   ^~
2025-09-08T00:05:26,595   ./base/sbml/math/ASTQualifierNode.cpp: In member function ‘virtual void ASTQualifierNode::write(XMLOutputStream&) const’:
2025-09-08T00:05:26,596   ./base/sbml/math/ASTQualifierNode.cpp:157:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:05:26,596     157 |   if (&stream == NULL) return;
2025-09-08T00:05:26,596         |               ^
2025-09-08T00:05:26,596   ./base/sbml/math/ASTQualifierNode.cpp:155:42: note: ‘stream’ declared here
2025-09-08T00:05:26,596     155 | ASTQualifierNode::write(XMLOutputStream& stream) const
2025-09-08T00:05:26,596         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:05:26,937   ./base/sbml/math/ASTQualifierNode.cpp:157:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:26,937     157 |   if (&stream == NULL) return;
2025-09-08T00:05:26,937         |   ^~
2025-09-08T00:05:29,353   ./base/sbml/math/ASTSemanticsNode.cpp: In member function ‘virtual void ASTSemanticsNode::write(XMLOutputStream&) const’:
2025-09-08T00:05:29,353   ./base/sbml/math/ASTSemanticsNode.cpp:255:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:05:29,353     255 |   if (&stream == NULL) return;
2025-09-08T00:05:29,353         |               ^
2025-09-08T00:05:29,354   ./base/sbml/math/ASTSemanticsNode.cpp:253:42: note: ‘stream’ declared here
2025-09-08T00:05:29,354     253 | ASTSemanticsNode::write(XMLOutputStream& stream) const
2025-09-08T00:05:29,354         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:05:29,721   ./base/sbml/math/ASTSemanticsNode.cpp:255:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:29,722     255 |   if (&stream == NULL) return;
2025-09-08T00:05:29,722         |   ^~
2025-09-08T00:05:33,279   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:05:33,279                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:05:33,279                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:05:33,279                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:05:33,279                    from ./base/sbml/math/ASTTypes.cpp:38:
2025-09-08T00:05:33,279   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:05:33,279      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:05:33,279         |                           ^~~~~~~~~~~~~~
2025-09-08T00:05:33,280   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:05:33,280                    from ./base//sbml/math/ASTTypes.h:183,
2025-09-08T00:05:33,280                    from ./base/sbml/math/ASTTypes.cpp:36:
2025-09-08T00:05:33,280   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:05:33,280     117 |     struct unary_function
2025-09-08T00:05:33,281         |            ^~~~~~~~~~~~~~
2025-09-08T00:05:33,517   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2025-09-08T00:05:33,518   ./base/sbml/math/ASTTypes.cpp:439:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:05:33,518     439 |   if (&name == NULL)
2025-09-08T00:05:33,518         |             ^
2025-09-08T00:05:33,518   ./base/sbml/math/ASTTypes.cpp:437:56: note: ‘name’ declared here
2025-09-08T00:05:33,518     437 | isCoreTopLevelMathMLFunctionNodeTag(const std::string& name)
2025-09-08T00:05:33,518         |                                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:05:33,521   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2025-09-08T00:05:33,521   ./base/sbml/math/ASTTypes.cpp:465:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:05:33,521     465 |   if (&name == NULL)
2025-09-08T00:05:33,521         |             ^
2025-09-08T00:05:33,522   ./base/sbml/math/ASTTypes.cpp:463:54: note: ‘name’ declared here
2025-09-08T00:05:33,522     463 | isCoreTopLevelMathMLNumberNodeTag(const std::string& name)
2025-09-08T00:05:33,522         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:05:33,929   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2025-09-08T00:05:33,929   ./base/sbml/math/ASTTypes.cpp:439:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:33,929     439 |   if (&name == NULL)
2025-09-08T00:05:33,929         |   ^~
2025-09-08T00:05:33,930   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2025-09-08T00:05:33,930   ./base/sbml/math/ASTTypes.cpp:465:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:33,930     465 |   if (&name == NULL)
2025-09-08T00:05:33,930         |   ^~
2025-09-08T00:05:36,324   ./base/sbml/math/ASTUnaryFunctionNode.cpp: In member function ‘virtual void ASTUnaryFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:05:36,324   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:05:36,324     192 |   if (&stream == NULL) return;
2025-09-08T00:05:36,324         |               ^
2025-09-08T00:05:36,324   ./base/sbml/math/ASTUnaryFunctionNode.cpp:190:46: note: ‘stream’ declared here
2025-09-08T00:05:36,324     190 | ASTUnaryFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:05:36,324         |                             ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:05:36,666   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:36,667     192 |   if (&stream == NULL) return;
2025-09-08T00:05:36,667         |   ^~
2025-09-08T00:05:41,622   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:05:41,622                    from ./base//sbml/Model.h:426,
2025-09-08T00:05:41,623                    from L3Parser.ypp:78:
2025-09-08T00:05:41,623   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:05:41,623      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:05:41,623         |                           ^~~~~~~~~~~~~~
2025-09-08T00:05:41,624   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:05:41,624                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:05:41,624                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:05:41,624                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:05:41,624                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T00:05:41,624                    from ./base//sbml/math/ASTNode.h:147,
2025-09-08T00:05:41,624                    from ./base//sbml/math/L3Parser.h:37,
2025-09-08T00:05:41,624                    from L3Parser.ypp:77:
2025-09-08T00:05:41,625   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:05:41,625     117 |     struct unary_function
2025-09-08T00:05:41,625         |            ^~~~~~~~~~~~~~
2025-09-08T00:05:50,498   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2025-09-08T00:05:50,499   ./base/sbml/math/MathML.cpp:90:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:05:50,499      90 |   if (&stream == NULL) return NULL;
2025-09-08T00:05:50,499         |               ^
2025-09-08T00:05:50,499   ./base/sbml/math/MathML.cpp:88:29: note: ‘stream’ declared here
2025-09-08T00:05:50,499      88 | readMathML (XMLInputStream& stream, const std::string& reqd_prefix)
2025-09-08T00:05:50,499         |             ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:05:50,501   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T00:05:50,501   ./base/sbml/math/MathML.cpp:116:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:05:50,501     116 |   if (node == NULL || &stream == NULL) return;
2025-09-08T00:05:50,501         |                               ^
2025-09-08T00:05:50,501   ./base/sbml/math/MathML.cpp:114:52: note: ‘stream’ declared here
2025-09-08T00:05:50,501     114 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T00:05:50,502         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:05:50,861   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2025-09-08T00:05:50,861   ./base/sbml/math/MathML.cpp:90:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:50,861      90 |   if (&stream == NULL) return NULL;
2025-09-08T00:05:50,861         |   ^~
2025-09-08T00:05:50,862   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T00:05:50,862   ./base/sbml/math/MathML.cpp:116:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:05:50,862     116 |   if (node == NULL || &stream == NULL) return;
2025-09-08T00:05:50,862         |                               ^
2025-09-08T00:05:54,321   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:05:54,321                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:05:54,321                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:05:54,321                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:05:54,321                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:05:54,322                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2025-09-08T00:05:54,322                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2025-09-08T00:05:54,322   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:05:54,322      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:05:54,322         |                           ^~~~~~~~~~~~~~
2025-09-08T00:05:54,323   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:05:54,323                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:05:54,323                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:05:54,323                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T00:05:54,323   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:05:54,323     117 |     struct unary_function
2025-09-08T00:05:54,323         |            ^~~~~~~~~~~~~~
2025-09-08T00:05:59,475   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:05:59,475                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:05:59,475                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:05:59,475                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T00:05:59,475                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:63,
2025-09-08T00:05:59,475                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2025-09-08T00:05:59,475   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:05:59,476      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:05:59,476         |                           ^~~~~~~~~~~~~~
2025-09-08T00:05:59,476   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:05:59,477                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:05:59,477                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:05:59,477                    from /usr/include/c++/14/ios:44,
2025-09-08T00:05:59,477                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:05:59,477                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2025-09-08T00:05:59,477   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:05:59,477     117 |     struct unary_function
2025-09-08T00:05:59,477         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:11,483   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:06:11,483                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:06:11,483                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:06:11,484                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T00:06:11,484                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:68,
2025-09-08T00:06:11,484                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2025-09-08T00:06:11,484   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:06:11,484      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:06:11,484         |                           ^~~~~~~~~~~~~~
2025-09-08T00:06:11,486   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:06:11,487                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:06:11,487                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:06:11,487                    from /usr/include/c++/14/ios:44,
2025-09-08T00:06:11,487                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:06:11,487                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2025-09-08T00:06:11,487   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:06:11,487     117 |     struct unary_function
2025-09-08T00:06:11,487         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:18,750   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:06:18,751                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:06:18,751                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:06:18,751                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T00:06:18,751                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:65,
2025-09-08T00:06:18,751                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2025-09-08T00:06:18,751   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:06:18,751      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:06:18,751         |                           ^~~~~~~~~~~~~~
2025-09-08T00:06:18,752   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:06:18,752                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:06:18,752                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:06:18,753                    from /usr/include/c++/14/ios:44,
2025-09-08T00:06:18,753                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:06:18,753                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2025-09-08T00:06:18,753   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:06:18,753     117 |     struct unary_function
2025-09-08T00:06:18,753         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:19,117   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2025-09-08T00:06:19,117   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:06:19,117     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:06:19,117         |                  ^
2025-09-08T00:06:19,118   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:450:50: note: ‘attribute’ declared here
2025-09-08T00:06:19,118     450 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2025-09-08T00:06:19,118         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:06:19,118   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T00:06:19,118     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:06:19,118         |                                             ^
2025-09-08T00:06:19,118   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:451:50: note: ‘wrongattribute’ declared here
2025-09-08T00:06:19,119     451 |                               const std::string& wrongattribute)
2025-09-08T00:06:19,119         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T00:06:19,595   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:19,595     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:06:19,596         |                  ^
2025-09-08T00:06:19,596   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:19,596     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:06:19,596         |                                             ^
2025-09-08T00:06:24,169   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:06:24,170                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:06:24,170                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:06:24,170                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:06:24,170                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:06:24,170                    from ./base//sbml/packages/comp/sbml/CompBase.h:43,
2025-09-08T00:06:24,170                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:28:
2025-09-08T00:06:24,170   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:06:24,170      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:06:24,170         |                           ^~~~~~~~~~~~~~
2025-09-08T00:06:24,171   In file included from /usr/include/c++/14/bits/stl_tree.h:65,
2025-09-08T00:06:24,172                    from /usr/include/c++/14/set:62,
2025-09-08T00:06:24,172                    from ./base//sbml/packages/comp/sbml/CompBase.h:40:
2025-09-08T00:06:24,172   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:06:24,172     117 |     struct unary_function
2025-09-08T00:06:24,172         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:24,578   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:06:24,579   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:06:24,579     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:06:24,579         |                   ^
2025-09-08T00:06:24,579   ./base/sbml/packages/comp/sbml/CompBase.cpp:150:48: note: ‘attributes’ declared here
2025-09-08T00:06:24,579     150 | CompBase::readAttributes (const XMLAttributes& attributes,
2025-09-08T00:06:24,579         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:06:24,580   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T00:06:24,580     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:06:24,580         |                                                  ^
2025-09-08T00:06:24,580   ./base/sbml/packages/comp/sbml/CompBase.cpp:151:53: note: ‘expectedAttributes’ declared here
2025-09-08T00:06:24,580     151 |                           const ExpectedAttributes& expectedAttributes)
2025-09-08T00:06:24,580         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:06:24,583   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T00:06:24,583   ./base/sbml/packages/comp/sbml/CompBase.cpp:199:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:06:24,583     199 |   if(&element == NULL) return;
2025-09-08T00:06:24,583         |               ^
2025-09-08T00:06:24,583   ./base/sbml/packages/comp/sbml/CompBase.cpp:197:48: note: ‘element’ declared here
2025-09-08T00:06:24,584     197 | CompBase::logUnknownElement(const std::string &element)
2025-09-08T00:06:24,584         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:06:24,590   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T00:06:24,590   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:06:24,591     225 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:24,591         |                  ^
2025-09-08T00:06:24,591   ./base/sbml/packages/comp/sbml/CompBase.cpp:222:50: note: ‘attribute’ declared here
2025-09-08T00:06:24,591     222 | CompBase::logUnknownAttribute(const std::string &attribute,
2025-09-08T00:06:24,591         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:06:24,591   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:06:24,592     225 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:24,592         |                                      ^
2025-09-08T00:06:24,592   ./base/sbml/packages/comp/sbml/CompBase.cpp:223:50: note: ‘element’ declared here
2025-09-08T00:06:24,592     223 |                               const std::string& element)
2025-09-08T00:06:24,592         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:06:24,599   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T00:06:24,599   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:06:24,599     261 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:24,599         |                  ^
2025-09-08T00:06:24,600   ./base/sbml/packages/comp/sbml/CompBase.cpp:257:45: note: ‘attribute’ declared here
2025-09-08T00:06:24,600     257 | CompBase::logEmptyString(const std::string &attribute,
2025-09-08T00:06:24,600         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:06:24,600   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:06:24,600     261 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:24,600         |                                      ^
2025-09-08T00:06:24,601   ./base/sbml/packages/comp/sbml/CompBase.cpp:258:45: note: ‘element’ declared here
2025-09-08T00:06:24,601     258 |                          const std::string& element)
2025-09-08T00:06:24,601         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:06:24,605   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:06:24,606   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:06:24,606     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:06:24,606         |                  ^
2025-09-08T00:06:24,606   ./base/sbml/packages/comp/sbml/CompBase.cpp:280:43: note: ‘attribute’ declared here
2025-09-08T00:06:24,606     280 | CompBase::logInvalidId(const std::string& attribute,
2025-09-08T00:06:24,606         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:06:24,606   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T00:06:24,607     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:06:24,607         |                                             ^
2025-09-08T00:06:24,607   ./base/sbml/packages/comp/sbml/CompBase.cpp:281:43: note: ‘wrongattribute’ declared here
2025-09-08T00:06:24,607     281 |                        const std::string& wrongattribute,
2025-09-08T00:06:24,607         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T00:06:24,625   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T00:06:24,625   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:06:24,626     383 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:24,626         |                  ^
2025-09-08T00:06:24,626   ./base/sbml/packages/comp/sbml/CompBase.cpp:379:50: note: ‘attribute’ declared here
2025-09-08T00:06:24,626     379 | CompBase::logMissingAttribute(const std::string& attribute,
2025-09-08T00:06:24,626         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:06:24,626   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:06:24,627     383 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:24,627         |                                      ^
2025-09-08T00:06:24,627   ./base/sbml/packages/comp/sbml/CompBase.cpp:380:50: note: ‘element’ declared here
2025-09-08T00:06:24,627     380 |                               const std::string& element)
2025-09-08T00:06:24,627         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:06:25,196   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T00:06:25,196   ./base/sbml/packages/comp/sbml/CompBase.cpp:199:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,196     199 |   if(&element == NULL) return;
2025-09-08T00:06:25,197         |   ^~
2025-09-08T00:06:25,197   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T00:06:25,198   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,198     225 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:25,198         |                  ^
2025-09-08T00:06:25,198   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,198     225 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:25,198         |                                      ^
2025-09-08T00:06:25,199   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T00:06:25,199   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,199     261 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:25,199         |                  ^
2025-09-08T00:06:25,199   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,200     261 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:25,200         |                                      ^
2025-09-08T00:06:25,202   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:06:25,202   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,202     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:06:25,202         |                  ^
2025-09-08T00:06:25,202   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,202     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:06:25,202         |                                             ^
2025-09-08T00:06:25,204   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T00:06:25,204   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,204     383 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:25,204         |                  ^
2025-09-08T00:06:25,204   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,204     383 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:06:25,204         |                                      ^
2025-09-08T00:06:25,213   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:06:25,213   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,213     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:06:25,214         |                   ^
2025-09-08T00:06:25,214   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:25,214     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:06:25,214         |                                                  ^
2025-09-08T00:06:30,805   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:06:30,805                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:06:30,805                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:06:30,805                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:06:30,805                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:06:30,805                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:06:30,805                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2025-09-08T00:06:30,805   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:06:30,805      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:06:30,806         |                           ^~~~~~~~~~~~~~
2025-09-08T00:06:30,806   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:06:30,806                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:06:30,807                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:06:30,807                    from /usr/include/c++/14/ios:44,
2025-09-08T00:06:30,807                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:06:30,807                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:06:30,807                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2025-09-08T00:06:30,807   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:06:30,807     117 |     struct unary_function
2025-09-08T00:06:30,807         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:36,325   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:06:36,325                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:06:36,326                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:06:36,326                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:06:36,326                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:06:36,326                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:06:36,326                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2025-09-08T00:06:36,326   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:06:36,326      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:06:36,326         |                           ^~~~~~~~~~~~~~
2025-09-08T00:06:36,327   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:06:36,327                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:06:36,327                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:06:36,327                    from /usr/include/c++/14/ios:44,
2025-09-08T00:06:36,327                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:06:36,327                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:06:36,328                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2025-09-08T00:06:36,328   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:06:36,328     117 |     struct unary_function
2025-09-08T00:06:36,328         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:45,535   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:06:45,535                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:06:45,535                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:06:45,536                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:06:45,536                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:06:45,536                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:06:45,536                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2025-09-08T00:06:45,536   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:06:45,536      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:06:45,536         |                           ^~~~~~~~~~~~~~
2025-09-08T00:06:45,537   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:06:45,537                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:06:45,537                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:06:45,537                    from /usr/include/c++/14/ios:44,
2025-09-08T00:06:45,537                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:06:45,537                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:06:45,537                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2025-09-08T00:06:45,537   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:06:45,538     117 |     struct unary_function
2025-09-08T00:06:45,538         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:45,880   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2025-09-08T00:06:45,880   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:06:45,880     118 |   if (&(sid) != NULL)
2025-09-08T00:06:45,881         |              ^
2025-09-08T00:06:45,881   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2025-09-08T00:06:45,881     113 | ListOfDeletions::remove (const std::string& sid)
2025-09-08T00:06:45,881         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:06:46,352   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:06:46,353     118 |   if (&(sid) != NULL)
2025-09-08T00:06:46,353         |   ^~
2025-09-08T00:06:50,167   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:06:50,167                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:06:50,167                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:06:50,167                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:06:50,167                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:06:50,167                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:06:50,167                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2025-09-08T00:06:50,167   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:06:50,168      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:06:50,168         |                           ^~~~~~~~~~~~~~
2025-09-08T00:06:50,168   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:06:50,169                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:06:50,169                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:06:50,169                    from /usr/include/c++/14/ios:44,
2025-09-08T00:06:50,169                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:06:50,169                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:06:50,169                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2025-09-08T00:06:50,169   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:06:50,169     117 |     struct unary_function
2025-09-08T00:06:50,169         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:54,828   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:06:54,828                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:06:54,829                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:06:54,829                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:06:54,829                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:06:54,829                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:06:54,829                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2025-09-08T00:06:54,829   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:06:54,829      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:06:54,829         |                           ^~~~~~~~~~~~~~
2025-09-08T00:06:54,830   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:06:54,830                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:06:54,830                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:06:54,830                    from /usr/include/c++/14/ios:44,
2025-09-08T00:06:54,830                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:06:54,830                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:06:54,831                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2025-09-08T00:06:54,831   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:06:54,831     117 |     struct unary_function
2025-09-08T00:06:54,831         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:59,453   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:06:59,454                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:06:59,454                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:06:59,454                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:06:59,454                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:06:59,454                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:06:59,454                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2025-09-08T00:06:59,454   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:06:59,454      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:06:59,454         |                           ^~~~~~~~~~~~~~
2025-09-08T00:06:59,455   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:06:59,455                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:06:59,455                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:06:59,455                    from /usr/include/c++/14/ios:44,
2025-09-08T00:06:59,456                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:06:59,456                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:06:59,456                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2025-09-08T00:06:59,456   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:06:59,456     117 |     struct unary_function
2025-09-08T00:06:59,456         |            ^~~~~~~~~~~~~~
2025-09-08T00:06:59,791   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2025-09-08T00:06:59,792   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:06:59,792     113 |   if (&(sid) != NULL)
2025-09-08T00:06:59,792         |              ^
2025-09-08T00:06:59,792   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2025-09-08T00:06:59,792     108 | ListOfPorts::remove (const std::string& sid)
2025-09-08T00:06:59,792         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:07:00,257   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:07:00,257     113 |   if (&(sid) != NULL)
2025-09-08T00:07:00,257         |   ^~
2025-09-08T00:07:04,027   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:07:04,027                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:07:04,027                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:07:04,027                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:07:04,027                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:07:04,027                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:07:04,028                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2025-09-08T00:07:04,028   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:07:04,028      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:07:04,028         |                           ^~~~~~~~~~~~~~
2025-09-08T00:07:04,028   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:07:04,029                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:07:04,029                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:07:04,029                    from /usr/include/c++/14/ios:44,
2025-09-08T00:07:04,029                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:07:04,029                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:07:04,029                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2025-09-08T00:07:04,029   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:07:04,029     117 |     struct unary_function
2025-09-08T00:07:04,029         |            ^~~~~~~~~~~~~~
2025-09-08T00:07:08,269   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:07:08,269                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:07:08,269                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:07:08,270                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:07:08,270                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:07:08,270                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:07:08,270                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2025-09-08T00:07:08,270   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:07:08,270      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:07:08,270         |                           ^~~~~~~~~~~~~~
2025-09-08T00:07:08,271   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:07:08,271                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:07:08,271                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:07:08,271                    from /usr/include/c++/14/ios:44,
2025-09-08T00:07:08,271                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:07:08,272                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:07:08,272                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2025-09-08T00:07:08,272   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:07:08,272     117 |     struct unary_function
2025-09-08T00:07:08,272         |            ^~~~~~~~~~~~~~
2025-09-08T00:07:08,614   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2025-09-08T00:07:08,614   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:07:08,614     113 |   if (&(sid) != NULL)
2025-09-08T00:07:08,614         |              ^
2025-09-08T00:07:08,615   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2025-09-08T00:07:08,615     108 | ListOfSubmodels::remove (const std::string& sid)
2025-09-08T00:07:08,615         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:07:09,085   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:07:09,085     113 |   if (&(sid) != NULL)
2025-09-08T00:07:09,085         |   ^~
2025-09-08T00:07:12,914   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:07:12,914                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:07:12,914                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:07:12,914                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:07:12,914                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:07:12,915                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:07:12,915                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2025-09-08T00:07:12,915   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:07:12,915      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:07:12,915         |                           ^~~~~~~~~~~~~~
2025-09-08T00:07:12,916   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:07:12,916                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:07:12,916                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:07:12,916                    from /usr/include/c++/14/ios:44,
2025-09-08T00:07:12,916                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:07:12,916                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:07:12,916                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2025-09-08T00:07:12,916   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:07:12,916     117 |     struct unary_function
2025-09-08T00:07:12,917         |            ^~~~~~~~~~~~~~
2025-09-08T00:07:17,286   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:07:17,286                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:07:17,287                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:07:17,287                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:07:17,287                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:07:17,287                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:07:17,287                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2025-09-08T00:07:17,287   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:07:17,287      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:07:17,287         |                           ^~~~~~~~~~~~~~
2025-09-08T00:07:17,288   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:07:17,288                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:07:17,288                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:07:17,288                    from /usr/include/c++/14/ios:44,
2025-09-08T00:07:17,288                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:07:17,288                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:07:17,289                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2025-09-08T00:07:17,289   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:07:17,289     117 |     struct unary_function
2025-09-08T00:07:17,289         |            ^~~~~~~~~~~~~~
2025-09-08T00:07:22,532   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:56,
2025-09-08T00:07:22,532                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2025-09-08T00:07:22,533   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:07:22,533      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:07:22,533         |                           ^~~~~~~~~~~~~~
2025-09-08T00:07:22,533   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:07:22,534                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:07:22,534                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:07:22,534                    from /usr/include/c++/14/ios:44,
2025-09-08T00:07:22,534                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:07:22,534                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:07:22,534                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2025-09-08T00:07:22,534   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:07:22,534     117 |     struct unary_function
2025-09-08T00:07:22,534         |            ^~~~~~~~~~~~~~
2025-09-08T00:07:27,343   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:07:27,343                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:07:27,343                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:07:27,343                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:07:27,344                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:07:27,344                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:07:27,344                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2025-09-08T00:07:27,344   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:07:27,344      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:07:27,344         |                           ^~~~~~~~~~~~~~
2025-09-08T00:07:27,345   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:07:27,345                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:07:27,345                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:07:27,345                    from /usr/include/c++/14/ios:44,
2025-09-08T00:07:27,345                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:07:27,346                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:07:27,346                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2025-09-08T00:07:27,346   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:07:27,346     117 |     struct unary_function
2025-09-08T00:07:27,346         |            ^~~~~~~~~~~~~~
2025-09-08T00:07:34,249   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:07:34,249                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:07:34,249                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:07:34,249                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:07:34,249                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:07:34,249                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:07:34,250                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2025-09-08T00:07:34,250   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:07:34,250      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:07:34,250         |                           ^~~~~~~~~~~~~~
2025-09-08T00:07:34,250   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:07:34,250                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:07:34,250                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:07:34,250                    from /usr/include/c++/14/ios:44,
2025-09-08T00:07:34,250                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:07:34,251                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:07:34,251                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2025-09-08T00:07:34,251   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:07:34,251     117 |     struct unary_function
2025-09-08T00:07:34,251         |            ^~~~~~~~~~~~~~
2025-09-08T00:07:41,313   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:07:41,313                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:07:41,313                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:07:41,313                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:07:41,313                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:07:41,314                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T00:07:41,314                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:36:
2025-09-08T00:07:41,314   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:07:41,314      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:07:41,314         |                           ^~~~~~~~~~~~~~
2025-09-08T00:07:41,314   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:07:41,314                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:07:41,314                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:07:41,314                    from /usr/include/c++/14/ios:44,
2025-09-08T00:07:41,315                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:07:41,315                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:07:41,315                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:27:
2025-09-08T00:07:41,315   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:07:41,315     117 |     struct unary_function
2025-09-08T00:07:41,315         |            ^~~~~~~~~~~~~~
2025-09-08T00:07:50,070   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:07:50,070                    from ./base//sbml/RateRule.h:113,
2025-09-08T00:07:50,070                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2025-09-08T00:07:50,070   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:07:50,070      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:07:50,070         |                           ^~~~~~~~~~~~~~
2025-09-08T00:07:50,070   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:07:50,071                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:07:50,071                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:07:50,071                    from /usr/include/c++/14/ios:44,
2025-09-08T00:07:50,071                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:07:50,071                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:07:50,071                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2025-09-08T00:07:50,071   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:07:50,071     117 |     struct unary_function
2025-09-08T00:07:50,071         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:03,036   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:08:03,036                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:08:03,037                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:08:03,037                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T00:08:03,037                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:63,
2025-09-08T00:08:03,037                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:150,
2025-09-08T00:08:03,037                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2025-09-08T00:08:03,037   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:03,037      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:03,037         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:03,037   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:08:03,038                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:08:03,038                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:08:03,038                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:149:
2025-09-08T00:08:03,038   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:03,038     117 |     struct unary_function
2025-09-08T00:08:03,038         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:03,515   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:08:03,516   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:121:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:08:03,516     121 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T00:08:03,516         |              ^
2025-09-08T00:08:03,516   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:119:54: note: ‘props’ declared here
2025-09-08T00:08:03,516     119 |                         (const ConversionProperties &props) const
2025-09-08T00:08:03,516         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:08:04,281   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:121:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:04,281     121 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T00:08:04,281         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:08:11,749   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:08:11,749                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:08:11,750                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:08:11,750                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2025-09-08T00:08:11,750   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:11,750      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:11,750         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:11,750   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:08:11,750                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2025-09-08T00:08:11,750                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2025-09-08T00:08:11,750   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:11,751     117 |     struct unary_function
2025-09-08T00:08:11,751         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:12,086   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T00:08:12,087   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:08:12,087      54 |   if (&orig == NULL)
2025-09-08T00:08:12,087         |             ^
2025-09-08T00:08:12,087   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2025-09-08T00:08:12,087      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2025-09-08T00:08:12,087         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:08:12,089   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2025-09-08T00:08:12,089   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:08:12,089      80 |   if (&rhs == NULL)
2025-09-08T00:08:12,090         |            ^
2025-09-08T00:08:12,090   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2025-09-08T00:08:12,090      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2025-09-08T00:08:12,090         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:08:12,570   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:12,570      80 |   if (&rhs == NULL)
2025-09-08T00:08:12,570         |   ^~
2025-09-08T00:08:12,577   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T00:08:12,577   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:12,578      54 |   if (&orig == NULL)
2025-09-08T00:08:12,578         |   ^~
2025-09-08T00:08:16,526   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:08:16,527                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:08:16,527                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:08:16,527                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2025-09-08T00:08:16,527   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:16,527      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:16,527         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:16,528   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:08:16,528                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2025-09-08T00:08:16,528                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2025-09-08T00:08:16,528   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:16,528     117 |     struct unary_function
2025-09-08T00:08:16,528         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:16,758   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T00:08:16,758   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:08:16,758      50 |   if (&orig == NULL)
2025-09-08T00:08:16,758         |             ^
2025-09-08T00:08:16,758   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2025-09-08T00:08:16,758      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2025-09-08T00:08:16,758         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:08:16,760   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T00:08:16,760   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:08:16,760      76 |   if (&rhs == NULL)
2025-09-08T00:08:16,760         |            ^
2025-09-08T00:08:16,761   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2025-09-08T00:08:16,761      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2025-09-08T00:08:16,761         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:08:17,166   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T00:08:17,167   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:17,167      50 |   if (&orig == NULL)
2025-09-08T00:08:17,167         |   ^~
2025-09-08T00:08:17,167   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T00:08:17,168   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:17,168      76 |   if (&rhs == NULL)
2025-09-08T00:08:17,168         |   ^~
2025-09-08T00:08:20,191   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:08:20,192                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:08:20,192                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:08:20,192                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2025-09-08T00:08:20,192   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:20,192      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:20,192         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:20,192   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T00:08:20,192                    from /usr/include/c++/14/vector:68,
2025-09-08T00:08:20,193                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2025-09-08T00:08:20,193   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:20,193     117 |     struct unary_function
2025-09-08T00:08:20,193         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:24,128   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:08:24,128                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:08:24,128                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:08:24,128                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2025-09-08T00:08:24,129   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:24,129      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:24,129         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:24,129   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:08:24,129                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2025-09-08T00:08:24,129                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2025-09-08T00:08:24,129   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:24,129     117 |     struct unary_function
2025-09-08T00:08:24,129         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:24,364   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T00:08:24,364   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:08:24,364      53 |   if (&orig == NULL)
2025-09-08T00:08:24,364         |             ^
2025-09-08T00:08:24,365   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2025-09-08T00:08:24,365      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2025-09-08T00:08:24,365         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:08:24,366   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T00:08:24,367   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:08:24,367      83 |   if (&rhs == NULL)
2025-09-08T00:08:24,367         |            ^
2025-09-08T00:08:24,367   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2025-09-08T00:08:24,367      81 | SBMLUri::operator=(const SBMLUri& rhs)
2025-09-08T00:08:24,367         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T00:08:24,376   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2025-09-08T00:08:24,376   ./base/sbml/packages/comp/util/SBMLUri.cpp:157:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T00:08:24,376     157 |     ptr_fun<int,int>(tolower)); // scheme is icase
2025-09-08T00:08:24,376         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:08:24,376   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T00:08:24,376    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T00:08:24,376         |     ^~~~~~~
2025-09-08T00:08:24,380   ./base/sbml/packages/comp/util/SBMLUri.cpp:181:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T00:08:24,381     181 |      ptr_fun<int,int>(tolower)); // host is icase
2025-09-08T00:08:24,381         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:08:24,381   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T00:08:24,381    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T00:08:24,381         |     ^~~~~~~
2025-09-08T00:08:24,859   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T00:08:24,859   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:24,860      53 |   if (&orig == NULL)
2025-09-08T00:08:24,860         |   ^~
2025-09-08T00:08:24,860   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T00:08:24,860   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:24,860      83 |   if (&rhs == NULL)
2025-09-08T00:08:24,860         |   ^~
2025-09-08T00:08:29,600   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:08:29,600                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:08:29,600                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:08:29,600                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2025-09-08T00:08:29,600                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2025-09-08T00:08:29,600   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:29,600      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:29,601         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:29,601   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:08:29,601                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2025-09-08T00:08:29,601                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2025-09-08T00:08:29,601                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2025-09-08T00:08:29,601   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:29,601     117 |     struct unary_function
2025-09-08T00:08:29,601         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:44,899   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:08:44,900                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:08:44,900                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:08:44,900                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2025-09-08T00:08:44,900                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2025-09-08T00:08:44,900   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:44,900      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:44,900         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:44,900   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:08:44,900                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2025-09-08T00:08:44,901                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2025-09-08T00:08:44,901                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2025-09-08T00:08:44,901   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:44,901     117 |     struct unary_function
2025-09-08T00:08:44,901         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:48,768   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:08:48,768                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:08:48,768                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:08:48,769                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2025-09-08T00:08:48,769                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2025-09-08T00:08:48,769   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:48,769      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:48,769         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:48,770   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:08:48,770                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2025-09-08T00:08:48,770                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2025-09-08T00:08:48,770                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2025-09-08T00:08:48,770   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:48,770     117 |     struct unary_function
2025-09-08T00:08:48,770         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:52,648   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:08:52,648                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:08:52,648                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:08:52,648                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2025-09-08T00:08:52,648   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:52,648      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:52,648         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:52,649   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:08:52,649                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2025-09-08T00:08:52,649   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:52,649     117 |     struct unary_function
2025-09-08T00:08:52,649         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:53,338   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:53,338      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:08:53,339         |                       ^~~~~~~~~~~~~~
2025-09-08T00:08:53,339   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:53,339     117 |     struct unary_function
2025-09-08T00:08:53,339         |            ^~~~~~~~~~~~~~
2025-09-08T00:08:53,502   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:08:53,502   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T00:08:53,502     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T00:08:53,503         |            ^
2025-09-08T00:08:53,503   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2025-09-08T00:08:53,503     325 |   virtual bool visit (const SBase &x)
2025-09-08T00:08:53,503         |                       ~~~~~~~~~~~~~^
2025-09-08T00:08:53,520   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T00:08:53,520   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:08:53,520     481 |   if (&d == NULL) return 0;
2025-09-08T00:08:53,520         |          ^
2025-09-08T00:08:53,520   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2025-09-08T00:08:53,520     479 | CompValidator::validate (const SBMLDocument& d)
2025-09-08T00:08:53,520         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:08:53,534   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T00:08:53,534   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:08:53,534     610 |   if (&filename == NULL) return 0;
2025-09-08T00:08:53,534         |                 ^
2025-09-08T00:08:53,534   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2025-09-08T00:08:53,534     608 | CompValidator::validate (const std::string& filename)
2025-09-08T00:08:53,535         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:08:54,318   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:08:54,318   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:54,318     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T00:08:54,318         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:08:54,336   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T00:08:54,336   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:54,336     481 |   if (&d == NULL) return 0;
2025-09-08T00:08:54,336         |   ^~
2025-09-08T00:08:54,364   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T00:08:54,364   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:08:54,365     610 |   if (&filename == NULL) return 0;
2025-09-08T00:08:54,365         |   ^~
2025-09-08T00:08:59,546   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:08:59,546                    from ./base//sbml/Model.h:426,
2025-09-08T00:08:59,547                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2025-09-08T00:08:59,547   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:08:59,547      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:08:59,547         |                           ^~~~~~~~~~~~~~
2025-09-08T00:08:59,548   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:08:59,548                    from ./base//sbml/Model.h:424:
2025-09-08T00:08:59,548   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:08:59,548     117 |     struct unary_function
2025-09-08T00:08:59,548         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:03,832   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:09:03,832                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:09:03,832                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:09:03,832                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2025-09-08T00:09:03,832   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:03,832      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:03,832         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:03,833   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:03,833                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:09:03,833   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:03,834     117 |     struct unary_function
2025-09-08T00:09:03,834         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:08,063   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:09:08,064                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:09:08,064                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:09:08,064                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T00:09:08,064                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2025-09-08T00:09:08,064   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:08,064      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:08,064         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:08,065   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:08,065                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2025-09-08T00:09:08,065   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:08,065     117 |     struct unary_function
2025-09-08T00:09:08,065         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:12,191   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:09:12,191                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:09:12,191                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:09:12,191                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2025-09-08T00:09:12,191   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:12,192      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:12,192         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:12,192   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:12,193                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:09:12,193   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:12,193     117 |     struct unary_function
2025-09-08T00:09:12,193         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:15,989   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:09:15,989                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:09:15,989                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:09:15,989                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2025-09-08T00:09:15,989   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:15,990      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:15,990         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:15,990   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:15,990                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:09:15,990   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:15,990     117 |     struct unary_function
2025-09-08T00:09:15,990         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:19,980   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:09:19,980                    from ./base//sbml/Model.h:426,
2025-09-08T00:09:19,980                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2025-09-08T00:09:19,980   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:19,980      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:19,980         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:19,981   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:19,981                    from ./base//sbml/Model.h:424:
2025-09-08T00:09:19,981   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:19,981     117 |     struct unary_function
2025-09-08T00:09:19,981         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:27,355   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:09:27,356                    from ./base//sbml/Model.h:426,
2025-09-08T00:09:27,356                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2025-09-08T00:09:27,356   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:27,356      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:27,356         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:27,356   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:27,356                    from ./base//sbml/Model.h:424:
2025-09-08T00:09:27,356   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:27,357     117 |     struct unary_function
2025-09-08T00:09:27,357         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:31,785   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:09:31,785                    from ./base//sbml/Model.h:426,
2025-09-08T00:09:31,785                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2025-09-08T00:09:31,786   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:31,786      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:31,786         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:31,786   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:31,786                    from ./base//sbml/Model.h:424:
2025-09-08T00:09:31,786   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:31,786     117 |     struct unary_function
2025-09-08T00:09:31,786         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:39,219   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:09:39,219                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:09:39,219                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:09:39,219                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T00:09:39,220                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2025-09-08T00:09:39,220                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2025-09-08T00:09:39,220   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:39,220      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:39,220         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:39,221   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:39,221                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:09:39,221                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:09:39,221                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:09:39,221                    from ./base//sbml/SBase.h:146,
2025-09-08T00:09:39,221                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2025-09-08T00:09:39,221   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:39,221     117 |     struct unary_function
2025-09-08T00:09:39,222         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:44,087   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:09:44,087                    from ./base//sbml/Model.h:426,
2025-09-08T00:09:44,087                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2025-09-08T00:09:44,087   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:44,087      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:44,087         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:44,088   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:44,088                    from ./base//sbml/Model.h:424:
2025-09-08T00:09:44,088   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:44,088     117 |     struct unary_function
2025-09-08T00:09:44,089         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:48,162   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:09:48,162                    from ./base//sbml/Model.h:426,
2025-09-08T00:09:48,162                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2025-09-08T00:09:48,162   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:48,162      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:48,162         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:48,163   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:48,164                    from ./base//sbml/Model.h:424:
2025-09-08T00:09:48,164   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:48,164     117 |     struct unary_function
2025-09-08T00:09:48,164         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:52,151   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:09:52,152                    from ./base//sbml/Model.h:426,
2025-09-08T00:09:52,152                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2025-09-08T00:09:52,152   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:52,152      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:52,152         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:52,153   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:52,153                    from ./base//sbml/Model.h:424:
2025-09-08T00:09:52,153   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:52,153     117 |     struct unary_function
2025-09-08T00:09:52,153         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:56,128   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:09:56,129                    from ./base//sbml/Model.h:426,
2025-09-08T00:09:56,129                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2025-09-08T00:09:56,129   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:56,129      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:56,129         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:56,130   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:56,130                    from ./base//sbml/Model.h:424:
2025-09-08T00:09:56,130   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:56,130     117 |     struct unary_function
2025-09-08T00:09:56,130         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:00,259   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:10:00,259                    from ./base//sbml/Model.h:426,
2025-09-08T00:10:00,259                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2025-09-08T00:10:00,259   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:00,259      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:00,259         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:00,260   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:00,260                    from ./base//sbml/Model.h:424:
2025-09-08T00:10:00,260   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:00,260     117 |     struct unary_function
2025-09-08T00:10:00,260         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:04,572   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:10:04,572                    from ./base//sbml/Model.h:426,
2025-09-08T00:10:04,572                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2025-09-08T00:10:04,572   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:04,572      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:04,572         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:04,573   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:04,573                    from ./base//sbml/Model.h:424:
2025-09-08T00:10:04,573   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:04,573     117 |     struct unary_function
2025-09-08T00:10:04,573         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:09,677   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:10:09,678                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:10:09,678                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:10:09,678                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:10:09,678                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:10:09,678                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2025-09-08T00:10:09,678                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2025-09-08T00:10:09,678   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:09,678      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:09,678         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:09,679   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:09,679                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:10:09,679                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:10:09,679                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T00:10:09,680   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:09,680     117 |     struct unary_function
2025-09-08T00:10:09,680         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:10,028   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:10:10,028                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T00:10:10,029                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2025-09-08T00:10:10,029   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:10,029     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:10,029         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:10:10,029   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:10,029     117 |     struct unary_function
2025-09-08T00:10:10,029         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:10,036   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:10,037     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:10,037         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:10:10,037   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:10,037     117 |     struct unary_function
2025-09-08T00:10:10,037         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:10,053   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T00:10:10,053   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:10,053     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:10,054         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:10:10,054   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:10,054     117 |     struct unary_function
2025-09-08T00:10:10,054         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:14,645   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:10:14,645                    from ./base//sbml/Model.h:426,
2025-09-08T00:10:14,646                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:43,
2025-09-08T00:10:14,646                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2025-09-08T00:10:14,646   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:14,646      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:14,646         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:14,647   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:14,647                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:10:14,647                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:10:14,647                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42:
2025-09-08T00:10:14,647   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:14,647     117 |     struct unary_function
2025-09-08T00:10:14,647         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:15,024   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:10:15,025                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T00:10:15,025   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:15,025     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:15,025         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:10:15,025   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:15,025     117 |     struct unary_function
2025-09-08T00:10:15,025         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:15,033   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:15,033     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:15,033         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:10:15,033   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:15,033     117 |     struct unary_function
2025-09-08T00:10:15,033         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:15,049   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T00:10:15,049   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:15,049     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:15,050         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:10:15,050   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:15,050     117 |     struct unary_function
2025-09-08T00:10:15,050         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:20,670   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:10:20,670                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:10:20,670                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:10:20,670                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T00:10:20,671                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:49,
2025-09-08T00:10:20,671                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2025-09-08T00:10:20,671   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:20,671      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:20,671         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:20,671   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:20,672                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:10:20,672                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:10:20,672                    from /usr/include/c++/14/ios:44,
2025-09-08T00:10:20,672                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:10:20,672                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2025-09-08T00:10:20,672   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:20,672     117 |     struct unary_function
2025-09-08T00:10:20,672         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:24,595   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:10:24,596                    from ./base//sbml/Model.h:426,
2025-09-08T00:10:24,596                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:45,
2025-09-08T00:10:24,596                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2025-09-08T00:10:24,596   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:24,596      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:24,596         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:24,597   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:24,597                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:10:24,597                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:10:24,597                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44:
2025-09-08T00:10:24,597   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:24,597     117 |     struct unary_function
2025-09-08T00:10:24,597         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:24,974   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:10:24,974                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2025-09-08T00:10:24,974   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:24,974     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:24,974         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:10:24,975   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:24,975     117 |     struct unary_function
2025-09-08T00:10:24,975         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:24,982   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:24,982     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:24,982         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:10:24,982   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:24,983     117 |     struct unary_function
2025-09-08T00:10:24,983         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:24,998   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:51:
2025-09-08T00:10:24,999   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:24,999     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:24,999         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:10:24,999   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:24,999     117 |     struct unary_function
2025-09-08T00:10:24,999         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:30,379   In file included from ./base//sbml/packages/fbc/sbml/Association.h:51,
2025-09-08T00:10:30,380                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2025-09-08T00:10:30,380   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:30,380      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:30,380         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:30,380   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:30,381                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:10:30,381                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:10:30,381                    from /usr/include/c++/14/ios:44,
2025-09-08T00:10:30,381                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:10:30,381                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:10:30,381                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2025-09-08T00:10:30,381   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:30,381     117 |     struct unary_function
2025-09-08T00:10:30,381         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:38,234   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:69,
2025-09-08T00:10:38,234                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2025-09-08T00:10:38,234   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:38,234      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:38,234         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:38,234   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:38,234                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:10:38,235                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:10:38,235                    from /usr/include/c++/14/ios:44,
2025-09-08T00:10:38,235                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:10:38,235                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:10:38,235                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2025-09-08T00:10:38,235   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:38,235     117 |     struct unary_function
2025-09-08T00:10:38,235         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:45,498   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:47,
2025-09-08T00:10:45,498                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2025-09-08T00:10:45,498   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:45,498      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:45,498         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:45,498   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:45,498                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:10:45,499                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:10:45,499                    from /usr/include/c++/14/ios:44,
2025-09-08T00:10:45,499                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:10:45,499                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:10:45,499                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2025-09-08T00:10:45,499   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:45,499     117 |     struct unary_function
2025-09-08T00:10:45,499         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:46,018   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:46,018     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:46,018         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:10:46,018   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:46,018     117 |     struct unary_function
2025-09-08T00:10:46,019         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:52,210   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:47,
2025-09-08T00:10:52,210                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2025-09-08T00:10:52,210   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:52,210      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:52,210         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:52,210   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:52,211                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:10:52,211                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:10:52,211                    from /usr/include/c++/14/ios:44,
2025-09-08T00:10:52,211                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:10:52,211                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:10:52,211                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2025-09-08T00:10:52,211   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:52,211     117 |     struct unary_function
2025-09-08T00:10:52,212         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:52,735   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:52,735     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:52,735         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:10:52,735   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:52,736     117 |     struct unary_function
2025-09-08T00:10:52,736         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:58,679   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:66,
2025-09-08T00:10:58,679                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2025-09-08T00:10:58,680   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:58,680      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:10:58,680         |                           ^~~~~~~~~~~~~~
2025-09-08T00:10:58,680   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:10:58,680                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:10:58,680                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:10:58,680                    from /usr/include/c++/14/ios:44,
2025-09-08T00:10:58,680                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:10:58,680                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:10:58,681                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2025-09-08T00:10:58,681   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:58,681     117 |     struct unary_function
2025-09-08T00:10:58,681         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:59,197   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68:
2025-09-08T00:10:59,197   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:59,197     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:59,197         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:10:59,197   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:59,197     117 |     struct unary_function
2025-09-08T00:10:59,198         |            ^~~~~~~~~~~~~~
2025-09-08T00:10:59,204   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:10:59,204     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:10:59,204         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:10:59,204   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:10:59,204     117 |     struct unary_function
2025-09-08T00:10:59,205         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:06,411   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:11:06,411                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:11:06,412                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:11:06,412                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:11:06,412                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:11:06,412                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:36,
2025-09-08T00:11:06,412                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2025-09-08T00:11:06,412   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:06,412      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:06,412         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:06,413   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:06,413                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:11:06,413                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:11:06,413                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35:
2025-09-08T00:11:06,413   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:06,413     117 |     struct unary_function
2025-09-08T00:11:06,414         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:06,722   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:11:06,722                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T00:11:06,723                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T00:11:06,723                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2025-09-08T00:11:06,723   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:06,723     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:06,723         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:11:06,723   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:06,723     117 |     struct unary_function
2025-09-08T00:11:06,723         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:06,730   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:06,731     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:06,731         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:11:06,731   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:06,731     117 |     struct unary_function
2025-09-08T00:11:06,731         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:06,747   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T00:11:06,747   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:06,747     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:06,747         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:11:06,748   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:06,748     117 |     struct unary_function
2025-09-08T00:11:06,748         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:06,757   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:11:06,758   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:98:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:11:06,758      98 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T00:11:06,758         |              ^
2025-09-08T00:11:06,758   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:96:70: note: ‘props’ declared here
2025-09-08T00:11:06,758      96 |   CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:11:06,758         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:11:07,463   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:98:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:11:07,463      98 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T00:11:07,464         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:11:13,845   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:11:13,846                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:11:13,846                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:11:13,846                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:11:13,846                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:11:13,846                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:36,
2025-09-08T00:11:13,846                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2025-09-08T00:11:13,846   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:13,846      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:13,846         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:13,847   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:13,847                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:11:13,847                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:11:13,847                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35:
2025-09-08T00:11:13,847   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:13,848     117 |     struct unary_function
2025-09-08T00:11:13,848         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:14,157   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:11:14,157                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T00:11:14,157                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T00:11:14,157                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2025-09-08T00:11:14,157   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:14,157     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:14,157         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:11:14,157   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:14,157     117 |     struct unary_function
2025-09-08T00:11:14,158         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:14,165   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:14,165     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:14,165         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:11:14,165   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:14,165     117 |     struct unary_function
2025-09-08T00:11:14,165         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:14,181   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T00:11:14,182   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:14,182     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:14,182         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:11:14,182   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:14,182     117 |     struct unary_function
2025-09-08T00:11:14,182         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:14,192   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:11:14,192   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:11:14,192      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T00:11:14,192         |              ^
2025-09-08T00:11:14,192   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:97:70: note: ‘props’ declared here
2025-09-08T00:11:14,192      97 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:11:14,192         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:11:14,870   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:11:14,870      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T00:11:14,870         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:11:20,162   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:11:20,162                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:11:20,162                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:11:20,162                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2025-09-08T00:11:20,162                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2025-09-08T00:11:20,163   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:20,163      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:20,163         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:20,163   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:20,163                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:63,
2025-09-08T00:11:20,163                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2025-09-08T00:11:20,163                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2025-09-08T00:11:20,163   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:20,163     117 |     struct unary_function
2025-09-08T00:11:20,163         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:20,704   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:11:20,704                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T00:11:20,704   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:20,704     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:20,704         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:11:20,704   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:20,704     117 |     struct unary_function
2025-09-08T00:11:20,705         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:20,711   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:20,711     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:20,711         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:11:20,711   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:20,711     117 |     struct unary_function
2025-09-08T00:11:20,711         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:24,283   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:11:24,283                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:11:24,283                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:11:24,283                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2025-09-08T00:11:24,283                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2025-09-08T00:11:24,284   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:24,284      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:24,284         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:24,284   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:24,284                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:63,
2025-09-08T00:11:24,284                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2025-09-08T00:11:24,284                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2025-09-08T00:11:24,284   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:24,284     117 |     struct unary_function
2025-09-08T00:11:24,285         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:27,842   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:11:27,842                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:11:27,842                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:11:27,842                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2025-09-08T00:11:27,843   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:27,843      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:27,843         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:27,843   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:11:27,843                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2025-09-08T00:11:27,843   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:27,843     117 |     struct unary_function
2025-09-08T00:11:27,843         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:28,386   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:11:28,386                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T00:11:28,387                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T00:11:28,387                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2025-09-08T00:11:28,387   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:28,387     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:28,387         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:11:28,387   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:28,387     117 |     struct unary_function
2025-09-08T00:11:28,387         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:28,393   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:28,394     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:28,394         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:11:28,394   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:28,394     117 |     struct unary_function
2025-09-08T00:11:28,394         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:28,409   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T00:11:28,409   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:28,410     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:28,410         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:11:28,410   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:28,410     117 |     struct unary_function
2025-09-08T00:11:28,410         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:28,416   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:28,416      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:11:28,416         |                       ^~~~~~~~~~~~~~
2025-09-08T00:11:28,416   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:28,416     117 |     struct unary_function
2025-09-08T00:11:28,416         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:28,542   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:11:28,543   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T00:11:28,543     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T00:11:28,543         |            ^
2025-09-08T00:11:28,543   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2025-09-08T00:11:28,543     288 |   virtual bool visit (const SBase &x)
2025-09-08T00:11:28,543         |                       ~~~~~~~~~~~~~^
2025-09-08T00:11:28,554   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T00:11:28,554   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:11:28,554     383 |   if (&d == NULL) return 0;
2025-09-08T00:11:28,554         |          ^
2025-09-08T00:11:28,554   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2025-09-08T00:11:28,555     381 | FbcValidator::validate (const SBMLDocument& d)
2025-09-08T00:11:28,555         |                         ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:11:28,556   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T00:11:28,556   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:11:28,556     413 |   if (&filename == NULL) return 0;
2025-09-08T00:11:28,556         |                 ^
2025-09-08T00:11:28,556   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2025-09-08T00:11:28,556     411 | FbcValidator::validate (const std::string& filename)
2025-09-08T00:11:28,557         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:11:29,262   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T00:11:29,263   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:11:29,263     383 |   if (&d == NULL) return 0;
2025-09-08T00:11:29,263         |   ^~
2025-09-08T00:11:29,273   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:11:29,273   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:11:29,273     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T00:11:29,273         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:11:29,284   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T00:11:29,284   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:11:29,284     413 |   if (&filename == NULL) return 0;
2025-09-08T00:11:29,284         |   ^~
2025-09-08T00:11:33,093   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:11:33,093                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:11:33,093                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:11:33,093                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2025-09-08T00:11:33,093   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:33,093      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:33,093         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:33,094   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:33,094                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:11:33,094   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:33,094     117 |     struct unary_function
2025-09-08T00:11:33,095         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:33,631   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:11:33,631                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T00:11:33,631   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:33,632     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:33,632         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:11:33,632   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:33,632     117 |     struct unary_function
2025-09-08T00:11:33,632         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:33,639   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:33,639     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:33,640         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:11:33,640   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:33,640     117 |     struct unary_function
2025-09-08T00:11:33,640         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:36,758   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:11:36,758                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:11:36,758                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:11:36,758                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2025-09-08T00:11:36,758   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:36,758      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:36,758         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:36,759   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:36,759                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:11:36,759   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:36,759     117 |     struct unary_function
2025-09-08T00:11:36,760         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:40,393   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:11:40,393                    from ./base//sbml/Model.h:426,
2025-09-08T00:11:40,394                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2025-09-08T00:11:40,394   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:40,394      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:40,394         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:40,394   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:40,394                    from ./base//sbml/Model.h:424:
2025-09-08T00:11:40,394   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:40,394     117 |     struct unary_function
2025-09-08T00:11:40,394         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:40,840   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:11:40,840                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T00:11:40,840                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2025-09-08T00:11:40,840   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:40,840     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:40,841         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:11:40,841   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:40,841     117 |     struct unary_function
2025-09-08T00:11:40,841         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:40,847   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:40,847     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:40,847         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:11:40,848   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:40,848     117 |     struct unary_function
2025-09-08T00:11:40,848         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:40,863   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T00:11:40,863   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:40,863     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:40,864         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:11:40,864   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:40,864     117 |     struct unary_function
2025-09-08T00:11:40,864         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:44,433   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:11:44,433                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:11:44,433                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:11:44,433                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2025-09-08T00:11:44,433                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2025-09-08T00:11:44,434   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:44,434      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:44,434         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:44,434   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:44,435                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2025-09-08T00:11:44,435   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:44,435     117 |     struct unary_function
2025-09-08T00:11:44,435         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:44,908   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:11:44,908                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T00:11:44,908                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2025-09-08T00:11:44,908   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:44,908     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:44,908         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:11:44,909   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:44,909     117 |     struct unary_function
2025-09-08T00:11:44,909         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:44,916   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:44,916     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:44,916         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:11:44,916   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:44,917     117 |     struct unary_function
2025-09-08T00:11:44,917         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:44,933   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T00:11:44,933   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:44,933     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:11:44,933         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:11:44,933   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:44,933     117 |     struct unary_function
2025-09-08T00:11:44,933         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:49,567   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:11:49,567                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:11:49,567                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:11:49,568                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:11:49,568                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:11:49,568                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2025-09-08T00:11:49,568                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2025-09-08T00:11:49,568   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:49,568      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:49,568         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:49,568   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:49,569                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:11:49,569                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:11:49,569                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T00:11:49,569   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:49,569     117 |     struct unary_function
2025-09-08T00:11:49,569         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:49,890   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:11:49,890                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:11:49,890                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T00:11:49,891                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:41:
2025-09-08T00:11:49,891   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:49,891     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:49,891         |                             ^~~~~~~~
2025-09-08T00:11:49,891   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:11:49,891     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:11:49,891         |                              ^~~~~~~~
2025-09-08T00:11:49,893   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:49,893     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:49,893         |                             ^~~~~~~~
2025-09-08T00:11:49,893   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:11:49,893   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:11:49,893     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:11:49,894         |                          ^~~~~~~~
2025-09-08T00:11:49,902   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:49,903     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:49,903         |                             ^~~~~~~~
2025-09-08T00:11:49,903   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:11:49,903                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:11:49,903   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:11:49,903     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:11:49,903         |                                   ^~~~~~~~
2025-09-08T00:11:49,908   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:49,908     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:49,908         |                             ^~~~~~~~
2025-09-08T00:11:49,908   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:11:49,908     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:11:49,908         |                           ^~~~~~~~
2025-09-08T00:11:49,911   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:49,911     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:49,911         |                             ^~~~~~~~
2025-09-08T00:11:49,911   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:11:49,911   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:11:49,911     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:11:49,912         |                      ^~~~~~~~
2025-09-08T00:11:54,846   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:11:54,846                    from ./base//sbml/Model.h:426,
2025-09-08T00:11:54,847                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:50,
2025-09-08T00:11:54,847                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2025-09-08T00:11:54,847   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:54,847      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:54,847         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:54,848   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:54,848                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:11:54,848                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:11:54,848                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49:
2025-09-08T00:11:54,848   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:54,848     117 |     struct unary_function
2025-09-08T00:11:54,848         |            ^~~~~~~~~~~~~~
2025-09-08T00:11:55,244   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:11:55,245                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:11:55,245                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55:
2025-09-08T00:11:55,245   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:55,245     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:55,245         |                             ^~~~~~~~
2025-09-08T00:11:55,245   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:11:55,245     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:11:55,246         |                              ^~~~~~~~
2025-09-08T00:11:55,248   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:55,248     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:55,248         |                             ^~~~~~~~
2025-09-08T00:11:55,249   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:11:55,249   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:11:55,249     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:11:55,249         |                          ^~~~~~~~
2025-09-08T00:11:55,259   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:55,259     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:55,259         |                             ^~~~~~~~
2025-09-08T00:11:55,259   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:11:55,259                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:11:55,259   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:11:55,260     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:11:55,260         |                                   ^~~~~~~~
2025-09-08T00:11:55,265   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:55,265     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:55,265         |                             ^~~~~~~~
2025-09-08T00:11:55,266   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:11:55,266     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:11:55,266         |                           ^~~~~~~~
2025-09-08T00:11:55,269   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:11:55,269     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:11:55,269         |                             ^~~~~~~~
2025-09-08T00:11:55,270   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:11:55,270   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:11:55,270     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:11:55,270         |                      ^~~~~~~~
2025-09-08T00:11:59,579   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:11:59,579                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:11:59,579                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:11:59,579                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T00:11:59,579                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:59,
2025-09-08T00:11:59,579                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2025-09-08T00:11:59,579   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:11:59,579      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:11:59,580         |                           ^~~~~~~~~~~~~~
2025-09-08T00:11:59,580   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:11:59,580                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:11:59,580                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:11:59,580                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2025-09-08T00:11:59,580   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:11:59,580     117 |     struct unary_function
2025-09-08T00:11:59,580         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:04,038   In file included from ./base//sbml/SpeciesReference.h:261,
2025-09-08T00:12:04,038                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:46,
2025-09-08T00:12:04,038                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2025-09-08T00:12:04,039   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:12:04,039      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:12:04,039         |                           ^~~~~~~~~~~~~~
2025-09-08T00:12:04,039   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:12:04,039                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:12:04,039                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:12:04,039                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45:
2025-09-08T00:12:04,039   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:12:04,039     117 |     struct unary_function
2025-09-08T00:12:04,040         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:04,576   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:12:04,577                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:12:04,577                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:51:
2025-09-08T00:12:04,577   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:04,577     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:04,577         |                             ^~~~~~~~
2025-09-08T00:12:04,577   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:12:04,577     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:12:04,577         |                              ^~~~~~~~
2025-09-08T00:12:04,579   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:04,579     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:04,580         |                             ^~~~~~~~
2025-09-08T00:12:04,580   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:12:04,580   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:12:04,580     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:12:04,580         |                          ^~~~~~~~
2025-09-08T00:12:04,602   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:04,603     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:04,603         |                             ^~~~~~~~
2025-09-08T00:12:04,603   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:12:04,603                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:12:04,603   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:12:04,603     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:12:04,603         |                                   ^~~~~~~~
2025-09-08T00:12:04,608   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:04,608     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:04,608         |                             ^~~~~~~~
2025-09-08T00:12:04,608   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:12:04,608     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:12:04,608         |                           ^~~~~~~~
2025-09-08T00:12:04,611   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:04,611     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:04,611         |                             ^~~~~~~~
2025-09-08T00:12:04,611   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:12:04,612   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:12:04,612     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:12:04,612         |                      ^~~~~~~~
2025-09-08T00:12:08,222   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:12:08,222                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:12:08,222                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:12:08,222                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:12:08,222                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:12:08,222                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:12:08,222                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:12:08,223                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:12:08,223                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2025-09-08T00:12:08,223   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:12:08,223      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:12:08,223         |                           ^~~~~~~~~~~~~~
2025-09-08T00:12:08,224   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:12:08,224                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2025-09-08T00:12:08,224   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:12:08,224     117 |     struct unary_function
2025-09-08T00:12:08,224         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:14,397   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:12:14,397                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:12:14,397                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:12:14,398                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:12:14,398                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:12:14,398                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:12:14,398                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:12:14,398                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:12:14,398                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T00:12:14,398                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:12:14,398                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2025-09-08T00:12:14,398   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:12:14,399      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:12:14,399         |                           ^~~~~~~~~~~~~~
2025-09-08T00:12:14,399   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:12:14,399                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2025-09-08T00:12:14,399   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:12:14,399     117 |     struct unary_function
2025-09-08T00:12:14,399         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:14,718   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:14,719     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:14,719         |                             ^~~~~~~~
2025-09-08T00:12:14,719   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:12:14,719     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:12:14,719         |                              ^~~~~~~~
2025-09-08T00:12:14,721   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:14,721     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:14,721         |                             ^~~~~~~~
2025-09-08T00:12:14,721   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61,
2025-09-08T00:12:14,721                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:33:
2025-09-08T00:12:14,722   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:12:14,722     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:12:14,722         |                          ^~~~~~~~
2025-09-08T00:12:14,730   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:14,731     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:14,731         |                             ^~~~~~~~
2025-09-08T00:12:14,731   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:12:14,731                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:12:14,731   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:12:14,731     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:12:14,731         |                                   ^~~~~~~~
2025-09-08T00:12:14,736   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:14,736     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:14,736         |                             ^~~~~~~~
2025-09-08T00:12:14,736   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:12:14,736     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:12:14,736         |                           ^~~~~~~~
2025-09-08T00:12:14,739   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:14,739     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:14,739         |                             ^~~~~~~~
2025-09-08T00:12:14,739   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:12:14,740   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:12:14,740     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:12:14,740         |                      ^~~~~~~~
2025-09-08T00:12:20,084   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:12:20,084                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:12:20,084                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:12:20,084                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:12:20,084                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:12:20,084                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:12:20,085                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:12:20,085                    from ./base//sbml/packages/layout/sbml/LineSegment.h:55,
2025-09-08T00:12:20,085                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:56,
2025-09-08T00:12:20,085                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2025-09-08T00:12:20,085   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:12:20,085      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:12:20,085         |                           ^~~~~~~~~~~~~~
2025-09-08T00:12:20,086   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:12:20,086                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:54:
2025-09-08T00:12:20,086   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:12:20,086     117 |     struct unary_function
2025-09-08T00:12:20,086         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:20,381   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:20,381     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:12:20,381         |                        ^~~~~~~~
2025-09-08T00:12:20,382   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:12:20,382     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:12:20,382         |                        ^~~~~~~~
2025-09-08T00:12:25,085   In file included from ./base//sbml/packages/layout/sbml/Curve.h:66,
2025-09-08T00:12:25,085                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2025-09-08T00:12:25,085   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:12:25,085      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:12:25,085         |                           ^~~~~~~~~~~~~~
2025-09-08T00:12:25,085   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:12:25,086                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:12:25,086                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:12:25,086                    from /usr/include/c++/14/ios:44,
2025-09-08T00:12:25,086                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:12:25,086                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:12:25,086                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2025-09-08T00:12:25,086   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:12:25,086     117 |     struct unary_function
2025-09-08T00:12:25,086         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:25,688   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67:
2025-09-08T00:12:25,688   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:25,688     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:12:25,688         |                        ^~~~~~~~
2025-09-08T00:12:25,688   In file included from ./base/sbml/packages/layout/sbml/Curve.cpp:35:
2025-09-08T00:12:25,688   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:12:25,688     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:12:25,689         |                        ^~~~~~~~
2025-09-08T00:12:31,295   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:12:31,295                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:12:31,295                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:12:31,296                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:12:31,296                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:12:31,296                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:12:31,296                    from ./base//sbml/packages/layout/sbml/Dimensions.h:57,
2025-09-08T00:12:31,296                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2025-09-08T00:12:31,296   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:12:31,296      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:12:31,296         |                           ^~~~~~~~~~~~~~
2025-09-08T00:12:31,297   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:12:31,297                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:12:31,297                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:12:31,297                    from /usr/include/c++/14/ios:44,
2025-09-08T00:12:31,297                    from /usr/include/c++/14/istream:40,
2025-09-08T00:12:31,297                    from /usr/include/c++/14/sstream:40,
2025-09-08T00:12:31,298                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2025-09-08T00:12:31,298   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:12:31,298     117 |     struct unary_function
2025-09-08T00:12:31,298         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:36,797   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:55,
2025-09-08T00:12:36,797                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2025-09-08T00:12:36,797   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:12:36,797      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:12:36,797         |                           ^~~~~~~~~~~~~~
2025-09-08T00:12:36,797   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:12:36,798                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:53:
2025-09-08T00:12:36,798   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:12:36,798     117 |     struct unary_function
2025-09-08T00:12:36,798         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:37,420   In file included from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:55,
2025-09-08T00:12:37,420                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:57:
2025-09-08T00:12:37,420   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:37,421     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:37,421         |                             ^~~~~~~~
2025-09-08T00:12:37,421   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:12:37,421     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:12:37,421         |                            ^~~~~~~~
2025-09-08T00:12:37,426   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:37,426     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:37,426         |                             ^~~~~~~~
2025-09-08T00:12:37,426   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:12:37,426     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:12:37,426         |                          ^~~~~~~~
2025-09-08T00:12:37,429   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:37,429     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:37,429         |                             ^~~~~~~~
2025-09-08T00:12:37,429   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:34:
2025-09-08T00:12:37,429   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:12:37,429     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:12:37,429         |                          ^~~~~~~~
2025-09-08T00:12:37,432   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:37,432     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:37,432         |                             ^~~~~~~~
2025-09-08T00:12:37,432   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:35:
2025-09-08T00:12:37,432   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:12:37,432     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:12:37,432         |                      ^~~~~~~~
2025-09-08T00:12:37,434   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:37,434     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:37,435         |                             ^~~~~~~~
2025-09-08T00:12:37,435   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:36:
2025-09-08T00:12:37,435   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:12:37,435     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:12:37,435         |                              ^~~~~~~~
2025-09-08T00:12:37,438   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:37,438     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:37,438         |                             ^~~~~~~~
2025-09-08T00:12:37,438   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:12:37,438                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:37:
2025-09-08T00:12:37,439   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:12:37,439     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:12:37,439         |                                   ^~~~~~~~
2025-09-08T00:12:37,443   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:37,443     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:37,444         |                             ^~~~~~~~
2025-09-08T00:12:37,444   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:12:37,444     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:12:37,444         |                           ^~~~~~~~
2025-09-08T00:12:44,967   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:12:44,967                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:12:44,968                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:12:44,968                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:12:44,968                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:12:44,968                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:12:44,968                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:12:44,968                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:12:44,968                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T00:12:44,968                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T00:12:44,968                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2025-09-08T00:12:44,968   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:12:44,968      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:12:44,969         |                           ^~~~~~~~~~~~~~
2025-09-08T00:12:44,969   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:12:44,970                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:12:44,970                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:12:44,970                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:12:44,970                    from ./base//sbml/SBase.h:146,
2025-09-08T00:12:44,970                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T00:12:44,970   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:12:44,970     117 |     struct unary_function
2025-09-08T00:12:44,970         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:45,290   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:45,290     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:45,290         |                             ^~~~~~~~
2025-09-08T00:12:45,291   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:12:45,291                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T00:12:45,291                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T00:12:45,291                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:41:
2025-09-08T00:12:45,291   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:12:45,291     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:12:45,291         |                              ^~~~~~~~
2025-09-08T00:12:45,294   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:45,294     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:45,294         |                             ^~~~~~~~
2025-09-08T00:12:45,295   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:12:45,295   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:12:45,295     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:12:45,295         |                          ^~~~~~~~
2025-09-08T00:12:45,305   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:45,305     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:45,305         |                             ^~~~~~~~
2025-09-08T00:12:45,305   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:12:45,305                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:12:45,306   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:12:45,306     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:12:45,306         |                                   ^~~~~~~~
2025-09-08T00:12:45,311   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:45,311     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:45,311         |                             ^~~~~~~~
2025-09-08T00:12:45,312   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:12:45,312     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:12:45,312         |                           ^~~~~~~~
2025-09-08T00:12:45,315   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:45,315     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:45,315         |                             ^~~~~~~~
2025-09-08T00:12:45,316   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:12:45,316   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:12:45,316     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:12:45,316         |                      ^~~~~~~~
2025-09-08T00:12:45,337   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67,
2025-09-08T00:12:45,338                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T00:12:45,338   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:45,338     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:12:45,338         |                        ^~~~~~~~
2025-09-08T00:12:45,338   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T00:12:45,338   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:12:45,339     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:12:45,339         |                        ^~~~~~~~
2025-09-08T00:12:45,342   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:45,342     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:45,342         |                             ^~~~~~~~
2025-09-08T00:12:45,343   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T00:12:45,343   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:12:45,343     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:12:45,343         |                            ^~~~~~~~
2025-09-08T00:12:45,349   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:45,349     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:45,349         |                             ^~~~~~~~
2025-09-08T00:12:45,349   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T00:12:45,349   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:12:45,350     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:12:45,350         |                          ^~~~~~~~
2025-09-08T00:12:45,375   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T00:12:45,376   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-08T00:12:45,376     373 |   if (&id != NULL && id.empty())
2025-09-08T00:12:45,376         |           ^
2025-09-08T00:12:45,376   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2025-09-08T00:12:45,376     371 | int GraphicalObject::setId(const std::string& id)
2025-09-08T00:12:45,376         |                            ~~~~~~~~~~~~~~~~~~~^~
2025-09-08T00:12:45,378   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T00:12:45,378   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T00:12:45,378     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T00:12:45,378         |               ^
2025-09-08T00:12:45,378   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2025-09-08T00:12:45,378     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2025-09-08T00:12:45,379         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:12:45,937   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T00:12:45,937   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:12:45,937     373 |   if (&id != NULL && id.empty())
2025-09-08T00:12:45,937         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2025-09-08T00:12:45,938   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T00:12:45,938   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:12:45,938     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T00:12:45,938         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2025-09-08T00:12:53,890   In file included from ./base//sbml/packages/layout/sbml/Layout.h:58,
2025-09-08T00:12:53,890                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2025-09-08T00:12:53,890   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:12:53,890      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:12:53,890         |                           ^~~~~~~~~~~~~~
2025-09-08T00:12:53,891   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:12:53,891                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:12:53,891                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:12:53,891                    from /usr/include/c++/14/ios:44,
2025-09-08T00:12:53,891                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:12:53,892                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:12:53,892                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2025-09-08T00:12:53,892   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:12:53,892     117 |     struct unary_function
2025-09-08T00:12:53,892         |            ^~~~~~~~~~~~~~
2025-09-08T00:12:54,484   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:12:54,484                    from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:12:54,484   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:54,484     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:54,484         |                             ^~~~~~~~
2025-09-08T00:12:54,485   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:12:54,485     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:12:54,485         |                              ^~~~~~~~
2025-09-08T00:12:54,487   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:54,488     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:54,488         |                             ^~~~~~~~
2025-09-08T00:12:54,488   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:12:54,488   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:12:54,488     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:12:54,488         |                          ^~~~~~~~
2025-09-08T00:12:54,498   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:54,498     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:54,498         |                             ^~~~~~~~
2025-09-08T00:12:54,498   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:12:54,499                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:12:54,499   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:12:54,499     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:12:54,499         |                                   ^~~~~~~~
2025-09-08T00:12:54,504   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:54,504     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:54,504         |                             ^~~~~~~~
2025-09-08T00:12:54,505   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:12:54,505     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:12:54,505         |                           ^~~~~~~~
2025-09-08T00:12:54,508   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:54,508     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:54,509         |                             ^~~~~~~~
2025-09-08T00:12:54,509   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:12:54,509   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:12:54,509     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:12:54,509         |                      ^~~~~~~~
2025-09-08T00:12:54,526   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:54,526     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:54,526         |                             ^~~~~~~~
2025-09-08T00:12:54,526   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:57,
2025-09-08T00:12:54,526                    from ./base/sbml/packages/layout/sbml/Layout.cpp:37:
2025-09-08T00:12:54,527   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:12:54,527     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:12:54,527         |                            ^~~~~~~~
2025-09-08T00:12:54,532   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:12:54,532     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:12:54,533         |                             ^~~~~~~~
2025-09-08T00:12:54,533   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:12:54,533     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:12:54,533         |                          ^~~~~~~~
2025-09-08T00:12:54,577   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2025-09-08T00:12:54,578   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:12:54,578     453 |   if (&(name) == NULL)
2025-09-08T00:12:54,578         |               ^
2025-09-08T00:12:54,578   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2025-09-08T00:12:54,578     448 | int Layout::setName (const std::string& name)
2025-09-08T00:12:54,578         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:12:55,284   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:12:55,284     453 |   if (&(name) == NULL)
2025-09-08T00:12:55,284         |   ^~
2025-09-08T00:13:06,706   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:13:06,707                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:13:06,707                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:13:06,707                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:13:06,707                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:13:06,707                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:13:06,707                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:13:06,707                    from ./base//sbml/packages/layout/sbml/LineSegment.h:55,
2025-09-08T00:13:06,707                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2025-09-08T00:13:06,707   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:06,707      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:06,708         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:06,708   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:06,708                    from ./base//sbml/packages/layout/sbml/LineSegment.h:52:
2025-09-08T00:13:06,708   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:06,708     117 |     struct unary_function
2025-09-08T00:13:06,708         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:12,583   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:13:12,583                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:13:12,583                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:13:12,583                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:13:12,583                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:13:12,583                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:13:12,583                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:13:12,584                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2025-09-08T00:13:12,584   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:12,584      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:12,584         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:12,584   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:12,584                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:13:12,584                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:13:12,584                    from /usr/include/c++/14/ios:44,
2025-09-08T00:13:12,584                    from /usr/include/c++/14/istream:40,
2025-09-08T00:13:12,584                    from /usr/include/c++/14/sstream:40,
2025-09-08T00:13:12,585                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2025-09-08T00:13:12,585   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:12,585     117 |     struct unary_function
2025-09-08T00:13:12,585         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:18,150   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61,
2025-09-08T00:13:18,151                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2025-09-08T00:13:18,151   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:18,151      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:18,151         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:18,151   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:18,151                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:59:
2025-09-08T00:13:18,152   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:18,152     117 |     struct unary_function
2025-09-08T00:13:18,152         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:18,773   In file included from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:55,
2025-09-08T00:13:18,773                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63:
2025-09-08T00:13:18,773   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:18,773     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:18,773         |                             ^~~~~~~~
2025-09-08T00:13:18,773   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:13:18,773     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:13:18,774         |                                   ^~~~~~~~
2025-09-08T00:13:18,778   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:18,778     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:18,778         |                             ^~~~~~~~
2025-09-08T00:13:18,778   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:13:18,778     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:13:18,778         |                           ^~~~~~~~
2025-09-08T00:13:18,781   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:18,781     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:18,781         |                             ^~~~~~~~
2025-09-08T00:13:18,782   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:13:18,782                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:36:
2025-09-08T00:13:18,782   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:13:18,782     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:13:18,782         |                              ^~~~~~~~
2025-09-08T00:13:18,784   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:18,784     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:18,784         |                             ^~~~~~~~
2025-09-08T00:13:18,784   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:13:18,784   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:13:18,784     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:13:18,785         |                          ^~~~~~~~
2025-09-08T00:13:18,787   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:18,787     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:18,787         |                             ^~~~~~~~
2025-09-08T00:13:18,787   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:13:18,787   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:13:18,787     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:13:18,787         |                      ^~~~~~~~
2025-09-08T00:13:25,530   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:13:25,530                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:13:25,530                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:13:25,530                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:13:25,531                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:13:25,531                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:13:25,531                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:13:25,531                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:13:25,531                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T00:13:25,531                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:55,
2025-09-08T00:13:25,531                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2025-09-08T00:13:25,531   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:25,532      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:25,532         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:25,532   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:25,532                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:53:
2025-09-08T00:13:25,532   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:25,532     117 |     struct unary_function
2025-09-08T00:13:25,532         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:25,840   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:25,840     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:25,840         |                             ^~~~~~~~
2025-09-08T00:13:25,841   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:13:25,841     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:13:25,841         |                            ^~~~~~~~
2025-09-08T00:13:25,846   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:25,846     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:25,846         |                             ^~~~~~~~
2025-09-08T00:13:25,846   In file included from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:31:
2025-09-08T00:13:25,846   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:13:25,846     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:13:25,846         |                          ^~~~~~~~
2025-09-08T00:13:32,026   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:13:32,026                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:13:32,026                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:13:32,026                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:13:32,026                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:13:32,026                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:13:32,027                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:13:32,027                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:13:32,027                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T00:13:32,027                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:50,
2025-09-08T00:13:32,027                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2025-09-08T00:13:32,027   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:32,027      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:32,027         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:32,027   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:32,028                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49:
2025-09-08T00:13:32,028   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:32,028     117 |     struct unary_function
2025-09-08T00:13:32,028         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:32,343   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:32,343     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:32,343         |                             ^~~~~~~~
2025-09-08T00:13:32,343   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:13:32,343     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:13:32,344         |                          ^~~~~~~~
2025-09-08T00:13:32,345   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:32,346     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:32,346         |                             ^~~~~~~~
2025-09-08T00:13:32,346   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:13:32,346                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:31:
2025-09-08T00:13:32,346   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:13:32,346     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:13:32,346         |                              ^~~~~~~~
2025-09-08T00:13:32,355   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:32,355     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:32,355         |                             ^~~~~~~~
2025-09-08T00:13:32,356   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:13:32,356                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:13:32,356   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:13:32,356     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:13:32,356         |                                   ^~~~~~~~
2025-09-08T00:13:32,360   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:32,361     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:32,361         |                             ^~~~~~~~
2025-09-08T00:13:32,361   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:13:32,361     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:13:32,361         |                           ^~~~~~~~
2025-09-08T00:13:32,364   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:32,364     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:32,364         |                             ^~~~~~~~
2025-09-08T00:13:32,364   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:13:32,364   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:13:32,364     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:13:32,365         |                      ^~~~~~~~
2025-09-08T00:13:37,456   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:13:37,456                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:13:37,456                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:13:37,456                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:13:37,456                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:13:37,456                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:13:37,457                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:13:37,457                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:13:37,457                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T00:13:37,457                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:55,
2025-09-08T00:13:37,457                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2025-09-08T00:13:37,457   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:37,457      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:37,457         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:37,457   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:37,458                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:53:
2025-09-08T00:13:37,458   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:37,458     117 |     struct unary_function
2025-09-08T00:13:37,458         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:37,780   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:37,780     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:37,780         |                             ^~~~~~~~
2025-09-08T00:13:37,780   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:13:37,781     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:13:37,781         |                                   ^~~~~~~~
2025-09-08T00:13:37,783   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:37,783     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:37,783         |                             ^~~~~~~~
2025-09-08T00:13:37,784   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:13:37,784                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:31:
2025-09-08T00:13:37,784   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:13:37,784     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:13:37,784         |                              ^~~~~~~~
2025-09-08T00:13:37,786   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:37,786     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:37,786         |                             ^~~~~~~~
2025-09-08T00:13:37,786   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:13:37,786   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:13:37,786     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:13:37,786         |                          ^~~~~~~~
2025-09-08T00:13:37,790   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:37,791     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:37,791         |                             ^~~~~~~~
2025-09-08T00:13:37,791   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:13:37,791   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:13:37,791     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:13:37,791         |                           ^~~~~~~~
2025-09-08T00:13:37,794   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:37,794     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:37,794         |                             ^~~~~~~~
2025-09-08T00:13:37,794   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:13:37,794   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:13:37,794     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:13:37,794         |                      ^~~~~~~~
2025-09-08T00:13:44,336   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:13:44,337                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:13:44,337                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:13:44,337                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:13:44,337                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:13:44,337                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:13:44,337                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:13:44,337                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:13:44,337                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T00:13:44,337                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2025-09-08T00:13:44,338                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2025-09-08T00:13:44,338   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:44,338      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:44,338         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:44,338   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:44,338                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2025-09-08T00:13:44,338   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:44,338     117 |     struct unary_function
2025-09-08T00:13:44,338         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:44,658   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:44,658     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:44,658         |                             ^~~~~~~~
2025-09-08T00:13:44,658   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:13:44,658     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:13:44,658         |                      ^~~~~~~~
2025-09-08T00:13:44,661   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:44,661     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:44,661         |                             ^~~~~~~~
2025-09-08T00:13:44,661   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:13:44,661                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:33:
2025-09-08T00:13:44,661   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:13:44,661     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:13:44,662         |                              ^~~~~~~~
2025-09-08T00:13:44,663   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:44,664     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:44,664         |                             ^~~~~~~~
2025-09-08T00:13:44,664   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:13:44,664   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:13:44,664     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:13:44,664         |                          ^~~~~~~~
2025-09-08T00:13:44,673   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:44,673     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:44,673         |                             ^~~~~~~~
2025-09-08T00:13:44,673   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:13:44,673                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:13:44,674   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:13:44,674     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:13:44,674         |                                   ^~~~~~~~
2025-09-08T00:13:44,678   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:44,678     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:44,678         |                             ^~~~~~~~
2025-09-08T00:13:44,679   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:13:44,679     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:13:44,679         |                           ^~~~~~~~
2025-09-08T00:13:50,274   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:13:50,274                    from ./base//sbml/Model.h:426,
2025-09-08T00:13:50,274                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2025-09-08T00:13:50,275   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:50,275      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:50,275         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:50,275   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:50,276                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:13:50,276                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:13:50,276                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2025-09-08T00:13:50,276   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:50,276     117 |     struct unary_function
2025-09-08T00:13:50,276         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:50,676   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:13:50,677                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:13:50,677                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:45:
2025-09-08T00:13:50,677   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:50,677     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:50,677         |                             ^~~~~~~~
2025-09-08T00:13:50,677   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:13:50,678     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:13:50,678         |                              ^~~~~~~~
2025-09-08T00:13:50,680   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:50,680     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:50,681         |                             ^~~~~~~~
2025-09-08T00:13:50,681   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:13:50,681   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:13:50,681     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:13:50,681         |                          ^~~~~~~~
2025-09-08T00:13:50,691   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:50,691     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:50,691         |                             ^~~~~~~~
2025-09-08T00:13:50,691   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:13:50,692                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:13:50,692   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:13:50,692     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:13:50,692         |                                   ^~~~~~~~
2025-09-08T00:13:50,697   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:50,697     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:50,697         |                             ^~~~~~~~
2025-09-08T00:13:50,698   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:13:50,698     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:13:50,698         |                           ^~~~~~~~
2025-09-08T00:13:50,701   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:50,701     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:50,702         |                             ^~~~~~~~
2025-09-08T00:13:50,702   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:13:50,702   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:13:50,702     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:13:50,702         |                      ^~~~~~~~
2025-09-08T00:13:54,878   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:13:54,878                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:13:54,878                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:13:54,878                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:13:54,878                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:13:54,878                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T00:13:54,878                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T00:13:54,878                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:13:54,879                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T00:13:54,879                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T00:13:54,879                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2025-09-08T00:13:54,879   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:54,879      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:54,879         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:54,879   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:54,879                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:13:54,879                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:13:54,880                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:13:54,880                    from ./base//sbml/SBase.h:146,
2025-09-08T00:13:54,880                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T00:13:54,880   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:54,880     117 |     struct unary_function
2025-09-08T00:13:54,880         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:58,605   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:13:58,605                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:13:58,605                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:13:58,605                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2025-09-08T00:13:58,606                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2025-09-08T00:13:58,606   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:13:58,606      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:13:58,606         |                           ^~~~~~~~~~~~~~
2025-09-08T00:13:58,606   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:13:58,606                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:67,
2025-09-08T00:13:58,606                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2025-09-08T00:13:58,606                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2025-09-08T00:13:58,607   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:13:58,607     117 |     struct unary_function
2025-09-08T00:13:58,607         |            ^~~~~~~~~~~~~~
2025-09-08T00:13:59,177   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:13:59,178                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:13:59,178                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T00:13:59,178                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T00:13:59,178                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T00:13:59,178   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:59,178     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:59,178         |                             ^~~~~~~~
2025-09-08T00:13:59,178   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:13:59,179     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:13:59,179         |                              ^~~~~~~~
2025-09-08T00:13:59,180   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:59,180     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:59,180         |                             ^~~~~~~~
2025-09-08T00:13:59,181   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:13:59,181   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:13:59,181     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:13:59,181         |                          ^~~~~~~~
2025-09-08T00:13:59,189   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:59,190     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:59,190         |                             ^~~~~~~~
2025-09-08T00:13:59,190   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:13:59,190                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:13:59,190   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:13:59,190     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:13:59,190         |                                   ^~~~~~~~
2025-09-08T00:13:59,195   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:59,195     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:59,195         |                             ^~~~~~~~
2025-09-08T00:13:59,195   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:13:59,195     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:13:59,195         |                           ^~~~~~~~
2025-09-08T00:13:59,198   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:59,198     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:59,198         |                             ^~~~~~~~
2025-09-08T00:13:59,198   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:13:59,199   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:13:59,199     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:13:59,199         |                      ^~~~~~~~
2025-09-08T00:13:59,220   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67,
2025-09-08T00:13:59,220                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T00:13:59,220   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:59,220     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:13:59,220         |                        ^~~~~~~~
2025-09-08T00:13:59,220   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T00:13:59,220   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:13:59,220     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:13:59,221         |                        ^~~~~~~~
2025-09-08T00:13:59,223   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:59,223     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:59,223         |                             ^~~~~~~~
2025-09-08T00:13:59,224   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T00:13:59,224   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:13:59,224     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:13:59,224         |                            ^~~~~~~~
2025-09-08T00:13:59,229   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:13:59,229     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:13:59,229         |                             ^~~~~~~~
2025-09-08T00:13:59,229   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T00:13:59,229   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:13:59,229     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:13:59,229         |                          ^~~~~~~~
2025-09-08T00:14:01,446   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintGeneralGlyphLayoutGGNoDuplicateReferences::check_(const Model&, const GeneralGlyph&)’:
2025-09-08T00:14:01,446   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:452:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T00:14:01,446     452 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2025-09-08T00:14:01,447         |       ~~~~~~~~~~~~~~~~^~
2025-09-08T00:14:01,447   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:438:11: note: ‘obj’ was declared here
2025-09-08T00:14:01,447     438 |   SBase * obj;
2025-09-08T00:14:01,447         |           ^~~
2025-09-08T00:14:01,757   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintReferenceGlyphLayoutREFGNoDuplicateReferences::check_(const Model&, const ReferenceGlyph&)’:
2025-09-08T00:14:01,757   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:807:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T00:14:01,757     807 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2025-09-08T00:14:01,757         |       ~~~~~~~~~~~~~~~~^~
2025-09-08T00:14:01,757   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:793:11: note: ‘obj’ was declared here
2025-09-08T00:14:01,757     793 |   SBase * obj;
2025-09-08T00:14:01,758         |           ^~~
2025-09-08T00:14:01,845   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintTextGlyphLayoutTGNoDuplicateReferences::check_(const Model&, const TextGlyph&)’:
2025-09-08T00:14:01,845   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:545:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T00:14:01,845     545 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2025-09-08T00:14:01,845         |       ~~~~~~~~~~~~~~~~^~
2025-09-08T00:14:01,846   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:531:11: note: ‘obj’ was declared here
2025-09-08T00:14:01,846     531 |   SBase * obj;
2025-09-08T00:14:01,846         |           ^~~
2025-09-08T00:14:01,934   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintSpeciesReferenceGlyphLayoutSRGNoDuplicateReferences::check_(const Model&, const SpeciesReferenceGlyph&)’:
2025-09-08T00:14:01,934   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:678:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T00:14:01,934     678 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2025-09-08T00:14:01,934         |       ~~~~~~~~~~~~~~~~^~
2025-09-08T00:14:01,934   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:664:11: note: ‘obj’ was declared here
2025-09-08T00:14:01,934     664 |   SBase * obj;
2025-09-08T00:14:01,934         |           ^~~
2025-09-08T00:14:06,134   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:14:06,134                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:14:06,134                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:14:06,134                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2025-09-08T00:14:06,134                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2025-09-08T00:14:06,134   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:06,135      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:06,135         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:06,135   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:06,135                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:67,
2025-09-08T00:14:06,135                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2025-09-08T00:14:06,135                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2025-09-08T00:14:06,135   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:06,135     117 |     struct unary_function
2025-09-08T00:14:06,135         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:09,640   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:14:09,640                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:14:09,640                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:14:09,640                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2025-09-08T00:14:09,640   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:09,640      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:09,641         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:09,641   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:09,641                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:14:09,641   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:09,641     117 |     struct unary_function
2025-09-08T00:14:09,641         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:10,211   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:14:10,211                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:14:10,211                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T00:14:10,211                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T00:14:10,211                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:35:
2025-09-08T00:14:10,212   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:10,212     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:10,212         |                             ^~~~~~~~
2025-09-08T00:14:10,212   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:14:10,212     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:14:10,212         |                              ^~~~~~~~
2025-09-08T00:14:10,214   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:10,214     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:10,214         |                             ^~~~~~~~
2025-09-08T00:14:10,214   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:14:10,214   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:14:10,214     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:14:10,214         |                          ^~~~~~~~
2025-09-08T00:14:10,223   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:10,223     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:10,223         |                             ^~~~~~~~
2025-09-08T00:14:10,224   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:14:10,224                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:14:10,224   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:14:10,224     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:14:10,224         |                                   ^~~~~~~~
2025-09-08T00:14:10,228   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:10,229     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:10,229         |                             ^~~~~~~~
2025-09-08T00:14:10,229   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:14:10,229     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:14:10,229         |                           ^~~~~~~~
2025-09-08T00:14:10,232   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:10,232     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:10,232         |                             ^~~~~~~~
2025-09-08T00:14:10,232   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:14:10,232   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:14:10,232     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:14:10,232         |                      ^~~~~~~~
2025-09-08T00:14:10,253   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67,
2025-09-08T00:14:10,253                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T00:14:10,253   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:10,254     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:14:10,254         |                        ^~~~~~~~
2025-09-08T00:14:10,254   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T00:14:10,254   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:14:10,254     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:14:10,254         |                        ^~~~~~~~
2025-09-08T00:14:10,257   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:10,257     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:10,257         |                             ^~~~~~~~
2025-09-08T00:14:10,257   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T00:14:10,257   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:14:10,257     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:14:10,257         |                            ^~~~~~~~
2025-09-08T00:14:10,262   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:10,262     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:10,263         |                             ^~~~~~~~
2025-09-08T00:14:10,263   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T00:14:10,263   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:14:10,263     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:14:10,263         |                          ^~~~~~~~
2025-09-08T00:14:10,264   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:10,264      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:14:10,265         |                       ^~~~~~~~~~~~~~
2025-09-08T00:14:10,265   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:10,265     117 |     struct unary_function
2025-09-08T00:14:10,265         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:10,506   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:14:10,506   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:24: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T00:14:10,506     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T00:14:10,506         |                        ^
2025-09-08T00:14:10,506   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:41: note: ‘x’ declared here
2025-09-08T00:14:10,506     417 |         virtual bool visit(const SBase &x)
2025-09-08T00:14:10,507         |                            ~~~~~~~~~~~~~^
2025-09-08T00:14:10,528   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T00:14:10,528   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:14:10,528     550 |   if (&d == NULL) return 0;
2025-09-08T00:14:10,528         |          ^
2025-09-08T00:14:10,529   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2025-09-08T00:14:10,529     548 | LayoutValidator::validate (const SBMLDocument& d)
2025-09-08T00:14:10,529         |                            ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:14:10,533   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T00:14:10,533   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:14:10,533     592 |   if (&filename == NULL) return 0;
2025-09-08T00:14:10,533         |                 ^
2025-09-08T00:14:10,533   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2025-09-08T00:14:10,533     590 | LayoutValidator::validate (const std::string& filename)
2025-09-08T00:14:10,533         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:14:11,489   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T00:14:11,489   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:11,490     550 |   if (&d == NULL) return 0;
2025-09-08T00:14:11,490         |   ^~
2025-09-08T00:14:11,513   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:14:11,513   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:32: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:11,514     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T00:14:11,514         |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:14:11,532   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T00:14:11,532   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:11,532     592 |   if (&filename == NULL) return 0;
2025-09-08T00:14:11,532         |   ^~
2025-09-08T00:14:16,357   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:14:16,357                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:14:16,357                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:14:16,357                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2025-09-08T00:14:16,357   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:16,357      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:16,357         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:16,358   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:16,358                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:14:16,358   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:16,359     117 |     struct unary_function
2025-09-08T00:14:16,359         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:16,925   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:14:16,925                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:14:16,925                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T00:14:16,925                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T00:14:16,925                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T00:14:16,925   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:16,925     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:16,926         |                             ^~~~~~~~
2025-09-08T00:14:16,926   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:14:16,926     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:14:16,926         |                              ^~~~~~~~
2025-09-08T00:14:16,929   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:16,929     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:16,929         |                             ^~~~~~~~
2025-09-08T00:14:16,929   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:14:16,930   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:14:16,930     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:14:16,930         |                          ^~~~~~~~
2025-09-08T00:14:16,939   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:16,939     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:16,939         |                             ^~~~~~~~
2025-09-08T00:14:16,940   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:14:16,940                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:14:16,940   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:14:16,940     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:14:16,940         |                                   ^~~~~~~~
2025-09-08T00:14:16,945   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:16,946     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:16,946         |                             ^~~~~~~~
2025-09-08T00:14:16,946   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:14:16,946     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:14:16,946         |                           ^~~~~~~~
2025-09-08T00:14:16,950   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:16,950     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:16,950         |                             ^~~~~~~~
2025-09-08T00:14:16,950   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:14:16,950   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:14:16,951     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:14:16,951         |                      ^~~~~~~~
2025-09-08T00:14:16,972   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67,
2025-09-08T00:14:16,973                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T00:14:16,973   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:16,973     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:14:16,973         |                        ^~~~~~~~
2025-09-08T00:14:16,973   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T00:14:16,973   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:14:16,974     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:14:16,974         |                        ^~~~~~~~
2025-09-08T00:14:16,977   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:16,977     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:16,977         |                             ^~~~~~~~
2025-09-08T00:14:16,978   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T00:14:16,978   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:14:16,978     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:14:16,978         |                            ^~~~~~~~
2025-09-08T00:14:16,984   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:16,984     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:16,984         |                             ^~~~~~~~
2025-09-08T00:14:16,984   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T00:14:16,985   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:14:16,985     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:14:16,985         |                          ^~~~~~~~
2025-09-08T00:14:20,118   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:14:20,119                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:14:20,119                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:14:20,119                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2025-09-08T00:14:20,119   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:20,119      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:20,119         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:20,119   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:20,119                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:14:20,120   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:20,120     117 |     struct unary_function
2025-09-08T00:14:20,120         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:23,663   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:14:23,663                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:14:23,663                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:14:23,663                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2025-09-08T00:14:23,663                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2025-09-08T00:14:23,664   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:23,664      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:23,664         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:23,664   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:23,664                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2025-09-08T00:14:23,664   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:23,664     117 |     struct unary_function
2025-09-08T00:14:23,664         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:24,158   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:14:24,158                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:14:24,158                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T00:14:24,159                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:36:
2025-09-08T00:14:24,159   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:24,159     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:24,159         |                             ^~~~~~~~
2025-09-08T00:14:24,159   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:14:24,159     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:14:24,159         |                              ^~~~~~~~
2025-09-08T00:14:24,161   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:24,161     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:24,161         |                             ^~~~~~~~
2025-09-08T00:14:24,161   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:14:24,161   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:14:24,162     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:14:24,162         |                          ^~~~~~~~
2025-09-08T00:14:24,171   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:24,171     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:24,171         |                             ^~~~~~~~
2025-09-08T00:14:24,171   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T00:14:24,171                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:14:24,171   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:14:24,171     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:14:24,172         |                                   ^~~~~~~~
2025-09-08T00:14:24,176   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:24,176     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:24,176         |                             ^~~~~~~~
2025-09-08T00:14:24,176   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:14:24,176     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:14:24,176         |                           ^~~~~~~~
2025-09-08T00:14:24,179   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:24,179     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:24,179         |                             ^~~~~~~~
2025-09-08T00:14:24,180   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T00:14:24,180   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:14:24,180     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:14:24,180         |                      ^~~~~~~~
2025-09-08T00:14:24,197   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:24,197     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:24,197         |                             ^~~~~~~~
2025-09-08T00:14:24,198   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:57,
2025-09-08T00:14:24,198                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:38:
2025-09-08T00:14:24,198   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:14:24,198     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:14:24,198         |                            ^~~~~~~~
2025-09-08T00:14:24,203   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:14:24,203     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:14:24,203         |                             ^~~~~~~~
2025-09-08T00:14:24,203   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:14:24,203     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:14:24,203         |                          ^~~~~~~~
2025-09-08T00:14:28,894   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:14:28,894                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:14:28,894                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:14:28,894                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:14:28,895                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:14:28,895                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2025-09-08T00:14:28,895                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2025-09-08T00:14:28,895   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:28,895      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:28,895         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:28,895   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:28,895                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:14:28,895                    from ./base//sbml/SBMLError.h:447,
2025-09-08T00:14:28,896                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T00:14:28,896   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:28,896     117 |     struct unary_function
2025-09-08T00:14:28,896         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:33,692   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:14:33,693                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:14:33,693                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:14:33,693                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T00:14:33,693                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:53,
2025-09-08T00:14:33,693                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2025-09-08T00:14:33,693   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:33,693      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:33,693         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:33,693   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:33,694                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:14:33,694                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:14:33,694                    from ./base//sbml/extension/SBasePlugin.h:252:
2025-09-08T00:14:33,694   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:33,694     117 |     struct unary_function
2025-09-08T00:14:33,694         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:38,430   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:14:38,430                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:14:38,430                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:14:38,430                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T00:14:38,430                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:59,
2025-09-08T00:14:38,430                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2025-09-08T00:14:38,431   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:38,431      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:38,431         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:38,431   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:38,431                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T00:14:38,431                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T00:14:38,431                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2025-09-08T00:14:38,431   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:38,432     117 |     struct unary_function
2025-09-08T00:14:38,432         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:42,083   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2025-09-08T00:14:42,083                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2025-09-08T00:14:42,083   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:42,083      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:42,083         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:42,084   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:42,084                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2025-09-08T00:14:42,084   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:42,084     117 |     struct unary_function
2025-09-08T00:14:42,084         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:42,674   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T00:14:42,674   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:14:42,674      81 |   if (&orig == NULL)
2025-09-08T00:14:42,674         |             ^
2025-09-08T00:14:42,675   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2025-09-08T00:14:42,675      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2025-09-08T00:14:42,675         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:14:42,675   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T00:14:42,676   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:14:42,676      99 |   if (&rhs == NULL)
2025-09-08T00:14:42,676         |            ^
2025-09-08T00:14:42,676   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2025-09-08T00:14:42,676      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2025-09-08T00:14:42,676         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:14:43,121   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T00:14:43,121   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:43,121      81 |   if (&orig == NULL)
2025-09-08T00:14:43,121         |   ^~
2025-09-08T00:14:43,121   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T00:14:43,122   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:43,122      99 |   if (&rhs == NULL)
2025-09-08T00:14:43,122         |   ^~
2025-09-08T00:14:46,822   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:59,
2025-09-08T00:14:46,822                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2025-09-08T00:14:46,823   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:46,823      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:46,823         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:46,823   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:46,823                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:55:
2025-09-08T00:14:46,823   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:46,823     117 |     struct unary_function
2025-09-08T00:14:46,823         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:47,418   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T00:14:47,419   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:14:47,419      88 |   if (&orig == NULL)
2025-09-08T00:14:47,419         |             ^
2025-09-08T00:14:47,419   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2025-09-08T00:14:47,419      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2025-09-08T00:14:47,419         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:14:47,421   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T00:14:47,421   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:14:47,421     114 |   if (&rhs == NULL)
2025-09-08T00:14:47,422         |            ^
2025-09-08T00:14:47,422   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2025-09-08T00:14:47,422     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2025-09-08T00:14:47,422         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:14:47,444   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T00:14:47,444   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:14:47,445     651 |   if (&orig == NULL)
2025-09-08T00:14:47,445         |             ^
2025-09-08T00:14:47,445   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:648:70: note: ‘orig’ declared here
2025-09-08T00:14:47,445     648 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2025-09-08T00:14:47,445         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:14:47,447   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T00:14:47,447   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:14:47,447     673 |   if (&rhs == NULL)
2025-09-08T00:14:47,447         |            ^
2025-09-08T00:14:47,447   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:671:59: note: ‘rhs’ declared here
2025-09-08T00:14:47,447     671 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2025-09-08T00:14:47,447         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:14:47,957   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T00:14:47,957   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:47,957      88 |   if (&orig == NULL)
2025-09-08T00:14:47,957         |   ^~
2025-09-08T00:14:47,958   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T00:14:47,958   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:47,958     114 |   if (&rhs == NULL)
2025-09-08T00:14:47,958         |   ^~
2025-09-08T00:14:47,959   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T00:14:47,959   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:47,960     673 |   if (&rhs == NULL)
2025-09-08T00:14:47,960         |   ^~
2025-09-08T00:14:47,970   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T00:14:47,970   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:47,970     651 |   if (&orig == NULL)
2025-09-08T00:14:47,971         |   ^~
2025-09-08T00:14:53,029   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2025-09-08T00:14:53,029                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2025-09-08T00:14:53,029   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:53,029      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:14:53,029         |                           ^~~~~~~~~~~~~~
2025-09-08T00:14:53,030   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:14:53,030                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2025-09-08T00:14:53,030   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:53,030     117 |     struct unary_function
2025-09-08T00:14:53,030         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:53,624   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T00:14:53,625   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:14:53,625      91 |   if (&orig == NULL)
2025-09-08T00:14:53,625         |             ^
2025-09-08T00:14:53,625   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2025-09-08T00:14:53,625      88 | Input::Input (const Input& orig)
2025-09-08T00:14:53,625         |               ~~~~~~~~~~~~~^~~~
2025-09-08T00:14:53,626   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T00:14:53,626   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:14:53,627     114 |   if (&rhs == NULL)
2025-09-08T00:14:53,627         |            ^
2025-09-08T00:14:53,627   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2025-09-08T00:14:53,627     112 | Input::operator=(const Input& rhs)
2025-09-08T00:14:53,627         |                  ~~~~~~~~~~~~~^~~
2025-09-08T00:14:53,631   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T00:14:53,631   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T00:14:53,631     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T00:14:53,632         |                             ^
2025-09-08T00:14:53,632   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2025-09-08T00:14:53,632     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T00:14:53,632         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:14:53,632   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T00:14:53,633   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:14:53,633     328 |   if (&(name) == NULL)
2025-09-08T00:14:53,633         |               ^
2025-09-08T00:14:53,633   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2025-09-08T00:14:53,633     326 | Input::setName(const std::string& name)
2025-09-08T00:14:53,633         |                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:14:53,666   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2025-09-08T00:14:53,666   ./base/sbml/packages/qual/sbml/Input.cpp:956:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:14:53,667     956 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T00:14:53,667         |                             ^~~~~~~~~~~~~~
2025-09-08T00:14:53,667   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:14:53,667     117 |     struct unary_function
2025-09-08T00:14:53,667         |            ^~~~~~~~~~~~~~
2025-09-08T00:14:54,206   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T00:14:54,206   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:54,206     328 |   if (&(name) == NULL)
2025-09-08T00:14:54,206         |   ^~
2025-09-08T00:14:54,223   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T00:14:54,223   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:54,223      91 |   if (&orig == NULL)
2025-09-08T00:14:54,223         |   ^~
2025-09-08T00:14:54,223   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T00:14:54,223   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:54,224     114 |   if (&rhs == NULL)
2025-09-08T00:14:54,224         |   ^~
2025-09-08T00:14:54,224   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T00:14:54,224   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:14:54,224     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T00:14:54,224         |   ^~
2025-09-08T00:15:00,936   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2025-09-08T00:15:00,936                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2025-09-08T00:15:00,936   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:00,937      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:00,937         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:00,937   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:00,937                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2025-09-08T00:15:00,937   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:00,937     117 |     struct unary_function
2025-09-08T00:15:00,937         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:01,535   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T00:15:01,535   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:15:01,535      89 |   if (&orig == NULL)
2025-09-08T00:15:01,535         |             ^
2025-09-08T00:15:01,536   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2025-09-08T00:15:01,536      86 | Output::Output (const Output& orig)
2025-09-08T00:15:01,536         |                 ~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:01,537   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T00:15:01,537   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:15:01,537     111 |   if (&rhs == NULL)
2025-09-08T00:15:01,537         |            ^
2025-09-08T00:15:01,537   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2025-09-08T00:15:01,538     109 | Output::operator=(const Output& rhs)
2025-09-08T00:15:01,538         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T00:15:01,541   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T00:15:01,541   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T00:15:01,541     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T00:15:01,541         |                             ^
2025-09-08T00:15:01,542   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2025-09-08T00:15:01,542     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T00:15:01,542         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:15:01,542   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T00:15:01,542   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:15:01,543     304 |   if (&(name) == NULL)
2025-09-08T00:15:01,543         |               ^
2025-09-08T00:15:01,543   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2025-09-08T00:15:01,543     302 | Output::setName(const std::string& name)
2025-09-08T00:15:01,543         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:01,573   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2025-09-08T00:15:01,573   ./base/sbml/packages/qual/sbml/Output.cpp:873:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:01,573     873 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T00:15:01,573         |                             ^~~~~~~~~~~~~~
2025-09-08T00:15:01,574   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:01,574     117 |     struct unary_function
2025-09-08T00:15:01,574         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:02,103   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T00:15:02,103   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:02,103     304 |   if (&(name) == NULL)
2025-09-08T00:15:02,104         |   ^~
2025-09-08T00:15:02,118   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T00:15:02,118   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:02,118      89 |   if (&orig == NULL)
2025-09-08T00:15:02,119         |   ^~
2025-09-08T00:15:02,119   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T00:15:02,119   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:02,119     111 |   if (&rhs == NULL)
2025-09-08T00:15:02,119         |   ^~
2025-09-08T00:15:02,119   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T00:15:02,119   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:02,119     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T00:15:02,119         |   ^~
2025-09-08T00:15:08,523   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:70,
2025-09-08T00:15:08,524                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2025-09-08T00:15:08,524   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:08,524      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:08,524         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:08,525   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:08,525                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:66:
2025-09-08T00:15:08,525   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:08,525     117 |     struct unary_function
2025-09-08T00:15:08,525         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:09,119   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T00:15:09,119   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:15:09,119      95 |   if (&orig == NULL)
2025-09-08T00:15:09,119         |             ^
2025-09-08T00:15:09,120   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2025-09-08T00:15:09,120      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2025-09-08T00:15:09,120         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:09,122   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T00:15:09,122   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:15:09,122     120 |   if (&rhs == NULL)
2025-09-08T00:15:09,122         |            ^
2025-09-08T00:15:09,123   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2025-09-08T00:15:09,123     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2025-09-08T00:15:09,123         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:09,127   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T00:15:09,127   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2025-09-08T00:15:09,127     295 |   if (&(compartment) == NULL)
2025-09-08T00:15:09,127         |                      ^
2025-09-08T00:15:09,127   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2025-09-08T00:15:09,127     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2025-09-08T00:15:09,127         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T00:15:09,129   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2025-09-08T00:15:09,129   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:15:09,129     329 |   if (&(name) == NULL)
2025-09-08T00:15:09,129         |               ^
2025-09-08T00:15:09,129   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2025-09-08T00:15:09,129     327 | QualitativeSpecies::setName(const std::string& name)
2025-09-08T00:15:09,129         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:09,682   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:09,682     329 |   if (&(name) == NULL)
2025-09-08T00:15:09,682         |   ^~
2025-09-08T00:15:09,696   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T00:15:09,696   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:09,696      95 |   if (&orig == NULL)
2025-09-08T00:15:09,696         |   ^~
2025-09-08T00:15:09,697   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T00:15:09,697   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:09,697     120 |   if (&rhs == NULL)
2025-09-08T00:15:09,697         |   ^~
2025-09-08T00:15:09,698   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T00:15:09,698   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:09,698     295 |   if (&(compartment) == NULL)
2025-09-08T00:15:09,699         |   ^~
2025-09-08T00:15:16,213   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2025-09-08T00:15:16,213                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2025-09-08T00:15:16,213   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:16,213      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:16,213         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:16,214   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:16,214                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2025-09-08T00:15:16,214   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:16,214     117 |     struct unary_function
2025-09-08T00:15:16,214         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:16,823   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T00:15:16,824   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:15:16,824      94 |   if (&orig == NULL)
2025-09-08T00:15:16,824         |             ^
2025-09-08T00:15:16,824   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2025-09-08T00:15:16,824      91 | Transition::Transition (const Transition& orig)
2025-09-08T00:15:16,824         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:16,826   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T00:15:16,826   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:15:16,826     118 |   if (&rhs == NULL)
2025-09-08T00:15:16,826         |            ^
2025-09-08T00:15:16,826   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2025-09-08T00:15:16,827     116 | Transition::operator=(const Transition& rhs)
2025-09-08T00:15:16,827         |                       ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:16,833   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2025-09-08T00:15:16,833   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:15:16,833     257 |   if (&(name) == NULL)
2025-09-08T00:15:16,833         |               ^
2025-09-08T00:15:16,834   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2025-09-08T00:15:16,834     255 | Transition::setName(const std::string& name)
2025-09-08T00:15:16,834         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:17,412   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:17,412     257 |   if (&(name) == NULL)
2025-09-08T00:15:17,412         |   ^~
2025-09-08T00:15:17,427   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T00:15:17,428   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:17,428     118 |   if (&rhs == NULL)
2025-09-08T00:15:17,428         |   ^~
2025-09-08T00:15:17,442   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T00:15:17,443   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:17,443      94 |   if (&orig == NULL)
2025-09-08T00:15:17,443         |   ^~
2025-09-08T00:15:24,119   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:15:24,119                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:15:24,120                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:15:24,120                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2025-09-08T00:15:24,120                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2025-09-08T00:15:24,120   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:24,120      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:24,120         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:24,120   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:24,120                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2025-09-08T00:15:24,120                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2025-09-08T00:15:24,121                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2025-09-08T00:15:24,121   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:24,121     117 |     struct unary_function
2025-09-08T00:15:24,121         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:29,043   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:15:29,044                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:15:29,044                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:15:29,044                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2025-09-08T00:15:29,044                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2025-09-08T00:15:29,044   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:29,044      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:29,044         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:29,044   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:29,045                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2025-09-08T00:15:29,045                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2025-09-08T00:15:29,045                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2025-09-08T00:15:29,045   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:29,045     117 |     struct unary_function
2025-09-08T00:15:29,045         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:32,783   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:15:32,784                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:15:32,784                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:15:32,784                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2025-09-08T00:15:32,784                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2025-09-08T00:15:32,784   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:32,784      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:32,784         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:32,785   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:32,785                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2025-09-08T00:15:32,785                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2025-09-08T00:15:32,785                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2025-09-08T00:15:32,786   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:32,786     117 |     struct unary_function
2025-09-08T00:15:32,786         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:36,489   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:15:36,489                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:15:36,489                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:15:36,489                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2025-09-08T00:15:36,489   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:36,489      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:36,490         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:36,490   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:36,490                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:15:36,490   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:36,490     117 |     struct unary_function
2025-09-08T00:15:36,490         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:37,055   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:37,055      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:15:37,056         |                       ^~~~~~~~~~~~~~
2025-09-08T00:15:37,056   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:37,056     117 |     struct unary_function
2025-09-08T00:15:37,056         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:37,218   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:15:37,218   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T00:15:37,218     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T00:15:37,218         |           ^
2025-09-08T00:15:37,219   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2025-09-08T00:15:37,219     313 |   virtual bool visit (const SBase &x)
2025-09-08T00:15:37,219         |                       ~~~~~~~~~~~~~^
2025-09-08T00:15:37,232   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T00:15:37,232   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:15:37,232     419 |   if (&d == NULL) return 0;
2025-09-08T00:15:37,232         |          ^
2025-09-08T00:15:37,232   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2025-09-08T00:15:37,233     417 | QualValidator::validate (const SBMLDocument& d)
2025-09-08T00:15:37,233         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:15:37,234   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T00:15:37,234   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:15:37,234     449 |   if (&filename == NULL) return 0;
2025-09-08T00:15:37,234         |                 ^
2025-09-08T00:15:37,234   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2025-09-08T00:15:37,234     447 | QualValidator::validate (const std::string& filename)
2025-09-08T00:15:37,235         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:15:37,982   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T00:15:37,983   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:37,983     419 |   if (&d == NULL) return 0;
2025-09-08T00:15:37,983         |   ^~
2025-09-08T00:15:37,996   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:15:37,996   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:37,996     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T00:15:37,996         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:38,008   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T00:15:38,008   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:38,009     449 |   if (&filename == NULL) return 0;
2025-09-08T00:15:38,009         |   ^~
2025-09-08T00:15:42,223   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:15:42,223                    from ./base//sbml/Model.h:426,
2025-09-08T00:15:42,223                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2025-09-08T00:15:42,223   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:42,223      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:42,223         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:42,224   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:42,224                    from ./base//sbml/Model.h:424:
2025-09-08T00:15:42,224   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:42,224     117 |     struct unary_function
2025-09-08T00:15:42,224         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:46,558   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:15:46,558                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:15:46,558                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:15:46,559                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2025-09-08T00:15:46,559                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2025-09-08T00:15:46,559   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:46,559      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:46,559         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:46,559   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:46,559                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2025-09-08T00:15:46,559   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:46,559     117 |     struct unary_function
2025-09-08T00:15:46,560         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:47,147   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:15:47,147   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:15:47,148      97 |   if (&(node) == NULL)
2025-09-08T00:15:47,148         |               ^
2025-09-08T00:15:47,148   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2025-09-08T00:15:47,148      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:15:47,148         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:47,574   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:47,575      97 |   if (&(node) == NULL)
2025-09-08T00:15:47,575         |   ^~
2025-09-08T00:15:50,508   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:15:50,508                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:15:50,508                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:15:50,509                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2025-09-08T00:15:50,509   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:50,509      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:50,509         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:50,509   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:50,509                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:15:50,509   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:50,509     117 |     struct unary_function
2025-09-08T00:15:50,509         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:54,145   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:15:54,145                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:15:54,146                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:15:54,146                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2025-09-08T00:15:54,146   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:54,146      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:54,146         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:54,146   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:54,146                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:15:54,146   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:54,146     117 |     struct unary_function
2025-09-08T00:15:54,147         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:57,604   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:15:57,604                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:15:57,605                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:15:57,605                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2025-09-08T00:15:57,605   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:57,605      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:57,605         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:57,606   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:57,606                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:15:57,606   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:57,606     117 |     struct unary_function
2025-09-08T00:15:57,606         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:01,303   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:16:01,303                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:16:01,303                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:16:01,303                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2025-09-08T00:16:01,304                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2025-09-08T00:16:01,304   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:01,304      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:01,304         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:01,304   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:01,304                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2025-09-08T00:16:01,304   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:01,304     117 |     struct unary_function
2025-09-08T00:16:01,304         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:06,335   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:16:06,335                    from ./base//sbml/Model.h:426,
2025-09-08T00:16:06,335                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2025-09-08T00:16:06,335   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:06,336      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:06,336         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:06,336   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:06,336                    from ./base//sbml/Model.h:424:
2025-09-08T00:16:06,336   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:06,336     117 |     struct unary_function
2025-09-08T00:16:06,336         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:10,240   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:16:10,241                    from ./base//sbml/Model.h:426,
2025-09-08T00:16:10,241                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2025-09-08T00:16:10,241   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:10,241      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:10,241         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:10,241   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:10,241                    from ./base//sbml/Model.h:424:
2025-09-08T00:16:10,241   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:10,242     117 |     struct unary_function
2025-09-08T00:16:10,242         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:14,138   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:16:14,139                    from ./base//sbml/Model.h:426,
2025-09-08T00:16:14,139                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2025-09-08T00:16:14,139   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:14,139      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:14,139         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:14,140   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:14,140                    from ./base//sbml/Model.h:424:
2025-09-08T00:16:14,140   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:14,140     117 |     struct unary_function
2025-09-08T00:16:14,140         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:14,505   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T00:16:14,505   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:16:14,505      74 |   if (&orig == NULL)
2025-09-08T00:16:14,505         |             ^
2025-09-08T00:16:14,506   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2025-09-08T00:16:14,506      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2025-09-08T00:16:14,506         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:14,509   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T00:16:14,509   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:16:14,509     138 |   if (&rhs == NULL)
2025-09-08T00:16:14,509         |            ^
2025-09-08T00:16:14,509   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2025-09-08T00:16:14,509     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2025-09-08T00:16:14,509         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:14,945   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T00:16:14,945   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:14,945      74 |   if (&orig == NULL)
2025-09-08T00:16:14,945         |   ^~
2025-09-08T00:16:14,947   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T00:16:14,947   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:14,947     138 |   if (&rhs == NULL)
2025-09-08T00:16:14,947         |   ^~
2025-09-08T00:16:18,825   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:16:18,825                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:16:18,825                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2025-09-08T00:16:18,826   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:18,826      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:18,826         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:18,826   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:18,826                    from ./base//sbml/UnitDefinition.h:254:
2025-09-08T00:16:18,826   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:18,826     117 |     struct unary_function
2025-09-08T00:16:18,826         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:30,985   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T00:16:30,985   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2025-09-08T00:16:30,985      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T00:16:30,986         |                       ^
2025-09-08T00:16:30,986   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2025-09-08T00:16:30,986      48 | IdList::IdList(const std::string& commaSeparated)
2025-09-08T00:16:30,986         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T00:16:31,223   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T00:16:31,223   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:31,223      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T00:16:31,223         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:38,416   In file included from ./base/sbml/util/memory.c:39:
2025-09-08T00:16:38,416   ./base//sbml/common/libsbml-package.h:44:9: warning: "PACKAGE_NAME" redefined
2025-09-08T00:16:38,416      44 | #define PACKAGE_NAME "libSBML"
2025-09-08T00:16:38,417         |         ^~~~~~~~~~~~
2025-09-08T00:16:38,417   <command-line>: note: this is the location of the previous definition
2025-09-08T00:16:38,600   In file included from ./base/sbml/util/util.c:49:
2025-09-08T00:16:38,600   ./base//sbml/common/libsbml-package.h:44:9: warning: "PACKAGE_NAME" redefined
2025-09-08T00:16:38,600      44 | #define PACKAGE_NAME "libSBML"
2025-09-08T00:16:38,600         |         ^~~~~~~~~~~~
2025-09-08T00:16:38,600   <command-line>: note: this is the location of the previous definition
2025-09-08T00:16:41,374   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:16:41,374                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:16:41,374                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2025-09-08T00:16:41,374   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:41,374      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:41,374         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:41,375   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:41,375                    from ./base//sbml/UnitDefinition.h:254:
2025-09-08T00:16:41,376   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:41,376     117 |     struct unary_function
2025-09-08T00:16:41,376         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:51,294   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:16:51,295                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:16:51,295                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2025-09-08T00:16:51,295   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:51,295      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:51,295         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:51,296   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:51,296                    from ./base//sbml/UnitDefinition.h:254:
2025-09-08T00:16:51,296   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:51,296     117 |     struct unary_function
2025-09-08T00:16:51,296         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:55,678   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:16:55,678                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:16:55,678                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2025-09-08T00:16:55,678   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:55,679      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:55,679         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:55,679   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:55,680                    from ./base//sbml/UnitDefinition.h:254:
2025-09-08T00:16:55,680   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:55,680     117 |     struct unary_function
2025-09-08T00:16:55,680         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:02,431   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:17:02,431                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:17:02,431                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2025-09-08T00:17:02,431                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2025-09-08T00:17:02,431   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:02,432      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:02,432         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:02,432   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:02,432                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T00:17:02,432                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2025-09-08T00:17:02,432                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2025-09-08T00:17:02,432   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:02,432     117 |     struct unary_function
2025-09-08T00:17:02,432         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:07,728   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:17:07,728                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:17:07,728                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2025-09-08T00:17:07,728                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2025-09-08T00:17:07,728   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:07,728      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:07,729         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:07,729   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:07,729                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T00:17:07,729                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2025-09-08T00:17:07,729                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2025-09-08T00:17:07,729   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:07,729     117 |     struct unary_function
2025-09-08T00:17:07,729         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:13,356   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:17:13,356                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:17:13,356                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2025-09-08T00:17:13,356                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2025-09-08T00:17:13,356   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:13,357      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:13,357         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:13,357   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:13,357                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T00:17:13,357                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2025-09-08T00:17:13,357                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2025-09-08T00:17:13,357   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:13,357     117 |     struct unary_function
2025-09-08T00:17:13,357         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:18,697   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:17:18,698                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:17:18,698                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2025-09-08T00:17:18,698                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2025-09-08T00:17:18,698   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:18,698      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:18,698         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:18,698   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:18,698                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T00:17:18,699                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2025-09-08T00:17:18,699                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2025-09-08T00:17:18,699   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:18,699     117 |     struct unary_function
2025-09-08T00:17:18,699         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:23,782   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:17:23,782                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:17:23,783                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2025-09-08T00:17:23,783                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2025-09-08T00:17:23,783   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:23,783      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:23,783         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:23,783   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:23,783                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T00:17:23,783                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2025-09-08T00:17:23,784                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2025-09-08T00:17:23,784   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:23,784     117 |     struct unary_function
2025-09-08T00:17:23,784         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:28,854   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:17:28,854                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:17:28,855                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:17:28,855                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2025-09-08T00:17:28,855                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2025-09-08T00:17:28,855   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:28,855      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:28,855         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:28,855   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:28,855                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T00:17:28,855                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2025-09-08T00:17:28,856                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2025-09-08T00:17:28,856   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:28,856     117 |     struct unary_function
2025-09-08T00:17:28,856         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:32,687   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:17:32,688                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:17:32,688                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2025-09-08T00:17:32,688   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:32,688      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:32,688         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:32,689   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:32,689                    from ./base//sbml/UnitDefinition.h:254:
2025-09-08T00:17:32,689   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:32,689     117 |     struct unary_function
2025-09-08T00:17:32,689         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:36,225   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:17:36,225                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:17:36,225                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2025-09-08T00:17:36,225   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:36,225      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:36,225         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:36,225   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:36,226                    from ./base//sbml/UnitDefinition.h:254:
2025-09-08T00:17:36,226   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:36,226     117 |     struct unary_function
2025-09-08T00:17:36,226         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:39,868   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:17:39,868                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:17:39,868                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2025-09-08T00:17:39,868   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:39,868      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:39,868         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:39,869   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:39,869                    from ./base//sbml/UnitDefinition.h:254:
2025-09-08T00:17:39,869   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:39,870     117 |     struct unary_function
2025-09-08T00:17:39,870         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:43,715   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:17:43,715                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:17:43,715                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:17:43,716                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:17:43,716                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T00:17:43,716                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2025-09-08T00:17:43,716                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2025-09-08T00:17:43,716   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:43,716      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:43,716         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:43,716   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:43,717                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:17:43,717                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:17:43,717                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2025-09-08T00:17:43,717   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:43,717     117 |     struct unary_function
2025-09-08T00:17:43,717         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:49,397   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:17:49,397                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:17:49,397                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:17:49,397                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:17:49,397                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T00:17:49,397                    from ./base//sbml/validator/SBMLInternalValidator.h:64,
2025-09-08T00:17:49,398                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2025-09-08T00:17:49,398   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:49,398      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:49,398         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:49,398   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:49,398                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:17:49,398                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:17:49,398                    from ./base//sbml/validator/SBMLInternalValidator.h:63:
2025-09-08T00:17:49,398   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:49,399     117 |     struct unary_function
2025-09-08T00:17:49,399         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:53,938   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:17:53,938                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:17:53,938                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T00:17:53,939                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:17:53,939                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T00:17:53,939                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2025-09-08T00:17:53,939   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:53,939      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:53,939         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:53,939   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:53,939                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:17:53,939                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:17:53,940                    from ./base//sbml/validator/SBMLValidator.h:73:
2025-09-08T00:17:53,940   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:53,940     117 |     struct unary_function
2025-09-08T00:17:53,940         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:54,180   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T00:17:54,180   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:17:54,180      59 |   if (&orig == NULL)
2025-09-08T00:17:54,180         |             ^
2025-09-08T00:17:54,181   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2025-09-08T00:17:54,181      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2025-09-08T00:17:54,181         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:17:54,182   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T00:17:54,182   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:17:54,182      87 |   if (&rhs == NULL)
2025-09-08T00:17:54,182         |            ^
2025-09-08T00:17:54,182   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2025-09-08T00:17:54,182      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2025-09-08T00:17:54,183         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:54,184   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T00:17:54,184   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T00:17:54,184     168 |   if (&msg == NULL) return;
2025-09-08T00:17:54,184         |            ^
2025-09-08T00:17:54,184   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2025-09-08T00:17:54,184     166 | SBMLValidator::logFailure (const SBMLError& msg)
2025-09-08T00:17:54,185         |                            ~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:54,185   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T00:17:54,185   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:17:54,185     182 |   if (&filename == NULL) return 0;
2025-09-08T00:17:54,185         |                 ^
2025-09-08T00:17:54,185   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2025-09-08T00:17:54,185     180 | SBMLValidator::validate (const std::string& filename)
2025-09-08T00:17:54,185         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:17:54,632   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T00:17:54,632   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:54,632      87 |   if (&rhs == NULL)
2025-09-08T00:17:54,632         |   ^~
2025-09-08T00:17:54,632   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T00:17:54,632   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:54,633      59 |   if (&orig == NULL)
2025-09-08T00:17:54,633         |   ^~
2025-09-08T00:17:54,636   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T00:17:54,636   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:54,636     168 |   if (&msg == NULL) return;
2025-09-08T00:17:54,637         |   ^~
2025-09-08T00:17:54,637   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T00:17:54,637   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:54,637     182 |   if (&filename == NULL) return 0;
2025-09-08T00:17:54,637         |   ^~
2025-09-08T00:17:57,612   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:17:57,612                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:17:57,612                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2025-09-08T00:17:57,612   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:57,612      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:57,612         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:57,612   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:57,612                    from ./base//sbml/UnitDefinition.h:254:
2025-09-08T00:17:57,613   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:57,613     117 |     struct unary_function
2025-09-08T00:17:57,613         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:04,325   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:18:04,325                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:18:04,325                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2025-09-08T00:18:04,325   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:04,325      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:04,325         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:04,326   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:04,326                    from ./base//sbml/UnitDefinition.h:254:
2025-09-08T00:18:04,326   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:04,326     117 |     struct unary_function
2025-09-08T00:18:04,326         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:13,207   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:18:13,207                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:18:13,207                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:18:13,207                    from ./base/sbml/validator/VConstraint.cpp:33:
2025-09-08T00:18:13,207   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:13,208      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:13,208         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:13,208   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:13,208                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:18:13,209   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:13,209     117 |     struct unary_function
2025-09-08T00:18:13,209         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:13,620   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2025-09-08T00:18:13,620   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2025-09-08T00:18:13,621      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T00:18:13,621         |               ^
2025-09-08T00:18:13,621   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2025-09-08T00:18:13,621      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T00:18:13,621         |                          ~~~~~~~~~~~~~^~~~~~
2025-09-08T00:18:13,621   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2025-09-08T00:18:13,622      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T00:18:13,622         |                                   ^
2025-09-08T00:18:13,622   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2025-09-08T00:18:13,622      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T00:18:13,622         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:18:14,003   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:14,003      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T00:18:14,003         |               ^
2025-09-08T00:18:14,003   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:14,003      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T00:18:14,003         |                                   ^
2025-09-08T00:18:16,694   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2025-09-08T00:18:16,694                    from ./base/sbml/validator/Validator.cpp:39:
2025-09-08T00:18:16,694   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:16,694      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:16,694         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:16,695   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:18:16,695                    from ./base/sbml/validator/Validator.cpp:34:
2025-09-08T00:18:16,695   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:16,695     117 |     struct unary_function
2025-09-08T00:18:16,695         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:17,228   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:17,228      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:18:17,228         |                       ^~~~~~~~~~~~~~
2025-09-08T00:18:17,228   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:17,228     117 |     struct unary_function
2025-09-08T00:18:17,229         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:17,595   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T00:18:17,595   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T00:18:17,596     709 |   if (&msg == NULL) return;
2025-09-08T00:18:17,596         |            ^
2025-09-08T00:18:17,596   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2025-09-08T00:18:17,596     707 | Validator::logFailure (const SBMLError& msg)
2025-09-08T00:18:17,596         |                        ~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:18:17,598   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T00:18:17,598   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:18:17,598     754 |   if (&d == NULL) return 0;
2025-09-08T00:18:17,598         |          ^
2025-09-08T00:18:17,598   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2025-09-08T00:18:17,598     752 | Validator::validate (const SBMLDocument& d)
2025-09-08T00:18:17,599         |                      ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:18:17,605   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T00:18:17,605   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:18:17,605     815 |   if (&filename == NULL) return 0;
2025-09-08T00:18:17,605         |                 ^
2025-09-08T00:18:17,605   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2025-09-08T00:18:17,605     813 | Validator::validate (const std::string& filename)
2025-09-08T00:18:17,605         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:18:18,886   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T00:18:18,886   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:18,886     709 |   if (&msg == NULL) return;
2025-09-08T00:18:18,886         |   ^~
2025-09-08T00:18:18,907   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T00:18:18,907   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:18,907     754 |   if (&d == NULL) return 0;
2025-09-08T00:18:18,907         |   ^~
2025-09-08T00:18:18,908   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T00:18:18,908   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:18,908     815 |   if (&filename == NULL) return 0;
2025-09-08T00:18:18,908         |   ^~
2025-09-08T00:18:25,180   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:18:25,181                    from ./base//sbml/Model.h:426,
2025-09-08T00:18:25,181                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2025-09-08T00:18:25,181   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:25,181      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:25,181         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:25,182   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:25,182                    from ./base//sbml/Model.h:424:
2025-09-08T00:18:25,182   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:25,182     117 |     struct unary_function
2025-09-08T00:18:25,182         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:29,371   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:18:29,372                    from ./base//sbml/Model.h:426,
2025-09-08T00:18:29,372                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2025-09-08T00:18:29,372   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:29,372      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:29,372         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:29,373   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:29,373                    from ./base//sbml/Model.h:424:
2025-09-08T00:18:29,373   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:29,373     117 |     struct unary_function
2025-09-08T00:18:29,373         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:33,278   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:18:33,278                    from ./base//sbml/Model.h:426,
2025-09-08T00:18:33,278                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2025-09-08T00:18:33,278   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:33,279      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:33,279         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:33,279   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:33,280                    from ./base//sbml/Model.h:424:
2025-09-08T00:18:33,280   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:33,280     117 |     struct unary_function
2025-09-08T00:18:33,280         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:41,267   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:18:41,267                    from ./base//sbml/Model.h:426,
2025-09-08T00:18:41,267                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2025-09-08T00:18:41,267   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:41,267      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:41,267         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:41,268   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:41,268                    from ./base//sbml/Model.h:424:
2025-09-08T00:18:41,268   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:41,268     117 |     struct unary_function
2025-09-08T00:18:41,268         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:45,633   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:18:45,633                    from ./base//sbml/Model.h:426,
2025-09-08T00:18:45,633                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2025-09-08T00:18:45,633   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:45,633      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:45,633         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:45,634   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:45,634                    from ./base//sbml/Model.h:424:
2025-09-08T00:18:45,634   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:45,634     117 |     struct unary_function
2025-09-08T00:18:45,634         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:45,950   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:18:45,950   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:18:45,950     104 |   if (&(node) == NULL)
2025-09-08T00:18:45,950         |               ^
2025-09-08T00:18:45,950   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2025-09-08T00:18:45,950     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:18:45,950         |                                                ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:18:46,366   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:46,366     104 |   if (&(node) == NULL)
2025-09-08T00:18:46,367         |   ^~
2025-09-08T00:18:49,585   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:18:49,585                    from ./base//sbml/Model.h:426,
2025-09-08T00:18:49,585                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2025-09-08T00:18:49,585   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:49,585      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:49,585         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:49,586   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:49,586                    from ./base//sbml/Model.h:424:
2025-09-08T00:18:49,586   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:49,586     117 |     struct unary_function
2025-09-08T00:18:49,586         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:49,913   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:49,914     119 | struct CycleContains : public unary_function<IdList, bool>
2025-09-08T00:18:49,914         |                               ^~~~~~~~~~~~~~
2025-09-08T00:18:49,914   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:49,914     117 |     struct unary_function
2025-09-08T00:18:49,914         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:54,793   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:18:54,793                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:18:54,793                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:18:54,793                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2025-09-08T00:18:54,793   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:54,793      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:54,793         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:54,794   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:54,794                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:18:54,794                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:18:54,794                    from ./base//sbml/SBO.h:197,
2025-09-08T00:18:54,794                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2025-09-08T00:18:54,794   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:54,794     117 |     struct unary_function
2025-09-08T00:18:54,794         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:58,592   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:18:58,592                    from ./base//sbml/Model.h:426,
2025-09-08T00:18:58,592                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2025-09-08T00:18:58,593   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:58,593      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:58,593         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:58,593   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:58,594                    from ./base//sbml/Model.h:424:
2025-09-08T00:18:58,594   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:58,594     117 |     struct unary_function
2025-09-08T00:18:58,594         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:02,883   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:19:02,883                    from ./base//sbml/Model.h:426,
2025-09-08T00:19:02,883                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2025-09-08T00:19:02,883   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:02,884      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:02,884         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:02,884   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:02,884                    from ./base//sbml/Model.h:424:
2025-09-08T00:19:02,884   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:02,884     117 |     struct unary_function
2025-09-08T00:19:02,884         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:03,200   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:19:03,200   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:19:03,200     101 |   if (&(node) == NULL)
2025-09-08T00:19:03,200         |               ^
2025-09-08T00:19:03,200   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2025-09-08T00:19:03,200      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:19:03,200         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:03,603   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:03,603     101 |   if (&(node) == NULL)
2025-09-08T00:19:03,603         |   ^~
2025-09-08T00:19:06,672   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:19:06,672                    from ./base//sbml/Model.h:426,
2025-09-08T00:19:06,672                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2025-09-08T00:19:06,672   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:06,672      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:06,672         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:06,673   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:06,673                    from ./base//sbml/Model.h:424:
2025-09-08T00:19:06,673   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:06,673     117 |     struct unary_function
2025-09-08T00:19:06,674         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:10,672   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:19:10,672                    from ./base//sbml/Model.h:426,
2025-09-08T00:19:10,672                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2025-09-08T00:19:10,672   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:10,672      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:10,673         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:10,673   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:10,673                    from ./base//sbml/Model.h:424:
2025-09-08T00:19:10,673   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:10,673     117 |     struct unary_function
2025-09-08T00:19:10,673         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:10,991   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:19:10,992   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:19:10,992     103 |   if (&(node) == NULL)
2025-09-08T00:19:10,992         |               ^
2025-09-08T00:19:10,992   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2025-09-08T00:19:10,992     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:19:10,992         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:11,398   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:11,398     103 |   if (&(node) == NULL)
2025-09-08T00:19:11,399         |   ^~
2025-09-08T00:19:14,502   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:19:14,502                    from ./base//sbml/Model.h:426,
2025-09-08T00:19:14,502                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2025-09-08T00:19:14,502   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:14,502      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:14,502         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:14,503   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:14,503                    from ./base//sbml/Model.h:424:
2025-09-08T00:19:14,503   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:14,504     117 |     struct unary_function
2025-09-08T00:19:14,504         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:18,226   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:19:18,226                    from ./base//sbml/Model.h:426,
2025-09-08T00:19:18,226                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2025-09-08T00:19:18,226   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:18,226      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:18,227         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:18,227   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:18,227                    from ./base//sbml/Model.h:424:
2025-09-08T00:19:18,227   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:18,227     117 |     struct unary_function
2025-09-08T00:19:18,227         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:18,541   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:19:18,541   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:19:18,541     104 |   if (&(node) == NULL)
2025-09-08T00:19:18,542         |               ^
2025-09-08T00:19:18,542   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T00:19:18,542     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:19:18,542         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:18,952   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:18,952     104 |   if (&(node) == NULL)
2025-09-08T00:19:18,952         |   ^~
2025-09-08T00:19:22,164   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:19:22,164                    from ./base//sbml/Model.h:426,
2025-09-08T00:19:22,164                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2025-09-08T00:19:22,164   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:22,164      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:22,164         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:22,164   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:22,165                    from ./base//sbml/Model.h:424:
2025-09-08T00:19:22,165   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:22,165     117 |     struct unary_function
2025-09-08T00:19:22,165         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:26,367   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:19:26,367                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:19:26,368                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:19:26,368                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T00:19:26,368                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2025-09-08T00:19:26,368   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:26,368      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:26,368         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:26,369   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:26,369                    from ./base/sbml/validator/constraints/IdBase.h:42:
2025-09-08T00:19:26,369   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:26,369     117 |     struct unary_function
2025-09-08T00:19:26,369         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:30,046   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:19:30,046                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:19:30,046                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:19:30,046                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2025-09-08T00:19:30,046   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:30,047      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:30,047         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:30,047   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:30,047                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:19:30,047   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:30,047     117 |     struct unary_function
2025-09-08T00:19:30,047         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:33,754   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:19:33,754                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:19:33,754                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:19:33,754                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2025-09-08T00:19:33,754   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:33,754      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:33,755         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:33,755   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:33,755                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:19:33,755                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:19:33,755                    from ./base//sbml/SBO.h:197,
2025-09-08T00:19:33,755                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2025-09-08T00:19:33,755   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:33,755     117 |     struct unary_function
2025-09-08T00:19:33,755         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:37,321   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:19:37,321                    from ./base//sbml/Model.h:426,
2025-09-08T00:19:37,321                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2025-09-08T00:19:37,321   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:37,322      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:37,322         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:37,322   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:37,322                    from ./base//sbml/Model.h:424:
2025-09-08T00:19:37,322   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:37,322     117 |     struct unary_function
2025-09-08T00:19:37,322         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:41,819   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:19:41,819                    from ./base//sbml/Model.h:426,
2025-09-08T00:19:41,819                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2025-09-08T00:19:41,819   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:41,819      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:41,819         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:41,819   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:41,820                    from ./base//sbml/Model.h:424:
2025-09-08T00:19:41,820   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:41,820     117 |     struct unary_function
2025-09-08T00:19:41,820         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:45,840   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:19:45,841                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:19:45,841                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2025-09-08T00:19:45,841   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:45,841      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:45,841         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:45,841   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:45,841                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:45,841                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:19:45,842                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:19:45,842                    from ./base//sbml/SBase.h:146,
2025-09-08T00:19:45,842                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2025-09-08T00:19:45,842   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:45,842     117 |     struct unary_function
2025-09-08T00:19:45,842         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:49,327   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:19:49,328                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:19:49,328                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2025-09-08T00:19:49,328   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:49,328      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:49,328         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:49,328   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:49,328                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:49,328                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:19:49,328                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:19:49,329                    from ./base//sbml/SBase.h:146,
2025-09-08T00:19:49,329                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2025-09-08T00:19:49,329   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:49,329     117 |     struct unary_function
2025-09-08T00:19:49,329         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:52,806   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:19:52,806                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:19:52,806                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2025-09-08T00:19:52,806   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:52,806      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:52,806         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:52,807   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:52,807                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:52,808                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:19:52,808                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:19:52,808                    from ./base//sbml/SBase.h:146,
2025-09-08T00:19:52,808                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2025-09-08T00:19:52,808   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:52,808     117 |     struct unary_function
2025-09-08T00:19:52,808         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:56,304   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:19:56,304                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:19:56,304                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2025-09-08T00:19:56,304   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:56,304      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:56,304         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:56,305   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:56,305                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:56,305                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:19:56,305                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:19:56,305                    from ./base//sbml/SBase.h:146,
2025-09-08T00:19:56,305                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2025-09-08T00:19:56,305   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:56,305     117 |     struct unary_function
2025-09-08T00:19:56,305         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:59,780   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:19:59,780                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:19:59,780                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2025-09-08T00:19:59,780   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:59,780      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:59,780         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:59,781   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:59,781                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:59,781                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:19:59,781                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:19:59,782                    from ./base//sbml/SBase.h:146,
2025-09-08T00:19:59,782                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2025-09-08T00:19:59,782   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:59,782     117 |     struct unary_function
2025-09-08T00:19:59,782         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:03,301   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:20:03,301                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:20:03,301                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:20:03,302                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2025-09-08T00:20:03,302   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:03,302      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:03,302         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:03,303   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:03,303                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:20:03,303                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:20:03,303                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:20:03,303                    from ./base//sbml/SBase.h:146,
2025-09-08T00:20:03,303                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2025-09-08T00:20:03,303   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:03,303     117 |     struct unary_function
2025-09-08T00:20:03,303         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:06,900   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:20:06,900                    from ./base//sbml/Model.h:426,
2025-09-08T00:20:06,900                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2025-09-08T00:20:06,900   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:06,900      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:06,900         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:06,901   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:06,901                    from ./base//sbml/Model.h:424:
2025-09-08T00:20:06,901   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:06,901     117 |     struct unary_function
2025-09-08T00:20:06,901         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:07,216   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:20:07,216   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:20:07,216     104 |   if (&(node) == NULL)
2025-09-08T00:20:07,216         |               ^
2025-09-08T00:20:07,216   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2025-09-08T00:20:07,216     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:20:07,217         |                                             ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:07,623   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:07,623     104 |   if (&(node) == NULL)
2025-09-08T00:20:07,623         |   ^~
2025-09-08T00:20:10,669   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:20:10,669                    from ./base//sbml/Model.h:426,
2025-09-08T00:20:10,669                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2025-09-08T00:20:10,669   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:10,669      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:10,669         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:10,670   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:10,670                    from ./base//sbml/Model.h:424:
2025-09-08T00:20:10,670   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:10,671     117 |     struct unary_function
2025-09-08T00:20:10,671         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:10,986   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:20:10,986   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:20:10,987     104 |   if (&(node) == NULL)
2025-09-08T00:20:10,987         |               ^
2025-09-08T00:20:10,987   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T00:20:10,987     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:20:10,987         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:11,400   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:11,400     104 |   if (&(node) == NULL)
2025-09-08T00:20:11,400         |   ^~
2025-09-08T00:20:14,642   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:20:14,642                    from ./base//sbml/Model.h:426,
2025-09-08T00:20:14,642                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2025-09-08T00:20:14,642   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:14,642      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:14,643         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:14,643   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:14,643                    from ./base//sbml/Model.h:424:
2025-09-08T00:20:14,643   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:14,643     117 |     struct unary_function
2025-09-08T00:20:14,643         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:19,057   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:20:19,057                    from ./base//sbml/Model.h:426,
2025-09-08T00:20:19,057                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2025-09-08T00:20:19,057   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:19,057      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:19,058         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:19,058   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:19,058                    from ./base//sbml/Model.h:424:
2025-09-08T00:20:19,058   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:19,058     117 |     struct unary_function
2025-09-08T00:20:19,058         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:19,377   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:20:19,378   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:20:19,378     100 |   if (&(node) == NULL)
2025-09-08T00:20:19,378         |               ^
2025-09-08T00:20:19,378   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2025-09-08T00:20:19,378      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:20:19,378         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:19,783   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:19,783     100 |   if (&(node) == NULL)
2025-09-08T00:20:19,783         |   ^~
2025-09-08T00:20:22,825   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:20:22,825                    from ./base//sbml/Model.h:426,
2025-09-08T00:20:22,825                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2025-09-08T00:20:22,825   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:22,826      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:22,826         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:22,826   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:22,826                    from ./base//sbml/Model.h:424:
2025-09-08T00:20:22,826   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:22,826     117 |     struct unary_function
2025-09-08T00:20:22,826         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:27,081   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:20:27,082                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:20:27,082                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:20:27,082                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2025-09-08T00:20:27,082   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:27,082      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:27,082         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:27,082   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:27,082                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:20:27,083   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:27,083     117 |     struct unary_function
2025-09-08T00:20:27,083         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:30,475   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:20:30,475                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:20:30,475                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:20:30,475                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2025-09-08T00:20:30,475   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:30,475      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:30,475         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:30,476   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:30,476                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T00:20:30,476   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:30,476     117 |     struct unary_function
2025-09-08T00:20:30,477         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:34,287   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:20:34,287                    from ./base//sbml/Model.h:426,
2025-09-08T00:20:34,287                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2025-09-08T00:20:34,287   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:34,287      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:34,287         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:34,287   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:34,288                    from ./base//sbml/Model.h:424:
2025-09-08T00:20:34,288   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:34,288     117 |     struct unary_function
2025-09-08T00:20:34,288         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:34,603   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:20:34,603   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:20:34,603     100 |   if (&(node) == NULL)
2025-09-08T00:20:34,603         |               ^
2025-09-08T00:20:34,604   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2025-09-08T00:20:34,604      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:20:34,604         |                                                 ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:35,019   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:35,020     100 |   if (&(node) == NULL)
2025-09-08T00:20:35,020         |   ^~
2025-09-08T00:20:38,257   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:20:38,257                    from ./base//sbml/Model.h:426,
2025-09-08T00:20:38,257                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2025-09-08T00:20:38,257   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:38,257      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:38,257         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:38,257   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:38,257                    from ./base//sbml/Model.h:424:
2025-09-08T00:20:38,258   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:38,258     117 |     struct unary_function
2025-09-08T00:20:38,258         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:38,574   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:20:38,574   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:20:38,574     105 |   if (&(node) == NULL)
2025-09-08T00:20:38,574         |               ^
2025-09-08T00:20:38,574   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2025-09-08T00:20:38,574     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:20:38,574         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:38,976   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:38,977     105 |   if (&(node) == NULL)
2025-09-08T00:20:38,977         |   ^~
2025-09-08T00:20:42,054   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:20:42,054                    from ./base//sbml/Model.h:426,
2025-09-08T00:20:42,054                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2025-09-08T00:20:42,054   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:42,054      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:42,055         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:42,055   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:42,055                    from ./base//sbml/Model.h:424:
2025-09-08T00:20:42,055   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:42,055     117 |     struct unary_function
2025-09-08T00:20:42,055         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:42,377   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:20:42,377   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:20:42,377     104 |   if (&(node) == NULL)
2025-09-08T00:20:42,377         |               ^
2025-09-08T00:20:42,377   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2025-09-08T00:20:42,377     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:20:42,378         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:42,780   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:42,780     104 |   if (&(node) == NULL)
2025-09-08T00:20:42,780         |   ^~
2025-09-08T00:20:45,820   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:20:45,820                    from ./base//sbml/Model.h:426,
2025-09-08T00:20:45,821                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2025-09-08T00:20:45,821   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:45,821      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:45,821         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:45,821   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:45,821                    from ./base//sbml/Model.h:424:
2025-09-08T00:20:45,821   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:45,821     117 |     struct unary_function
2025-09-08T00:20:45,822         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:48,466   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2025-09-08T00:20:48,466   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2025-09-08T00:20:48,466     188 |       sprintf(react, "KL_%u", n);
2025-09-08T00:20:48,466         |                          ^~
2025-09-08T00:20:48,467   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2025-09-08T00:20:48,467     188 |       sprintf(react, "KL_%u", n);
2025-09-08T00:20:48,467         |                      ^~~~~~~
2025-09-08T00:20:48,467   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2025-09-08T00:20:48,467     188 |       sprintf(react, "KL_%u", n);
2025-09-08T00:20:48,467         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:48,467   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2025-09-08T00:20:48,467     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T00:20:48,467         |                         ^~
2025-09-08T00:20:48,468   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2025-09-08T00:20:48,468     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T00:20:48,468         |                   ^~~~~~~~~
2025-09-08T00:20:48,468   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2025-09-08T00:20:48,468     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T00:20:48,468         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:59,592   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:20:59,593                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:20:59,593                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:20:59,593                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2025-09-08T00:20:59,593                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2025-09-08T00:20:59,593   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:59,593      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:59,593         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:59,593   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:59,594                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2025-09-08T00:20:59,594   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:59,594     117 |     struct unary_function
2025-09-08T00:20:59,594         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:03,128   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:03,128                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:03,128                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2025-09-08T00:21:03,128   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:03,128      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:03,129         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:03,129   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:03,129                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:03,129   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:03,129     117 |     struct unary_function
2025-09-08T00:21:03,129         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:03,445   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:21:03,445   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:21:03,445     100 |   if (&(node) == NULL)
2025-09-08T00:21:03,445         |               ^
2025-09-08T00:21:03,445   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2025-09-08T00:21:03,445      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:21:03,446         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:21:03,855   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:03,855     100 |   if (&(node) == NULL)
2025-09-08T00:21:03,855         |   ^~
2025-09-08T00:21:06,942   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:06,942                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:06,942                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2025-09-08T00:21:06,942   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:06,942      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:06,942         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:06,943   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:06,943                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:06,943   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:06,943     117 |     struct unary_function
2025-09-08T00:21:06,944         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:07,260   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:21:07,260   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:21:07,260     103 |   if (&(node) == NULL)
2025-09-08T00:21:07,261         |               ^
2025-09-08T00:21:07,261   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2025-09-08T00:21:07,261     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:21:07,261         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:21:07,665   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:07,665     103 |   if (&(node) == NULL)
2025-09-08T00:21:07,665         |   ^~
2025-09-08T00:21:10,738   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:10,738                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:10,738                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2025-09-08T00:21:10,738   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:10,739      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:10,739         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:10,739   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:10,739                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:10,739   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:10,739     117 |     struct unary_function
2025-09-08T00:21:10,739         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:15,313   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:21:15,313                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:21:15,313                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:21:15,313                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2025-09-08T00:21:15,313   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:15,314      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:15,314         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:15,314   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:15,314                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:15,314                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:21:15,314                    from ./base//sbml/SBO.h:197,
2025-09-08T00:21:15,314                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2025-09-08T00:21:15,314   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:15,314     117 |     struct unary_function
2025-09-08T00:21:15,315         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:19,030   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:19,030                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:19,030                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2025-09-08T00:21:19,031   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:19,031      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:19,031         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:19,031   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:19,031                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:19,031   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:19,031     117 |     struct unary_function
2025-09-08T00:21:19,031         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:23,121   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:23,121                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:23,121                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2025-09-08T00:21:23,121   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:23,121      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:23,121         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:23,122   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:23,122                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:23,122   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:23,122     117 |     struct unary_function
2025-09-08T00:21:23,122         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:27,410   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:21:27,411                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:21:27,411                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:21:27,411                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T00:21:27,411                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2025-09-08T00:21:27,411                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2025-09-08T00:21:27,411   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:27,411      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:27,412         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:27,412   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:27,412                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:21:27,412                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T00:21:27,412                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:21:27,412                    from ./base//sbml/SBase.h:146,
2025-09-08T00:21:27,412                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2025-09-08T00:21:27,412   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:27,412     117 |     struct unary_function
2025-09-08T00:21:27,413         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:31,926   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:31,927                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:31,927                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2025-09-08T00:21:31,927   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:31,927      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:31,927         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:31,927   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:31,927                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:31,927   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:31,928     117 |     struct unary_function
2025-09-08T00:21:31,928         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:35,499   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:35,500                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:35,500                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2025-09-08T00:21:35,500   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:35,500      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:35,500         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:35,500   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:35,500                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:35,500   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:35,500     117 |     struct unary_function
2025-09-08T00:21:35,501         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:39,074   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:39,074                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:39,074                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2025-09-08T00:21:39,074   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:39,075      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:39,075         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:39,075   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:39,075                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:39,076   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:39,076     117 |     struct unary_function
2025-09-08T00:21:39,076         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:42,627   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:21:42,628                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:21:42,628                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:21:42,628                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2025-09-08T00:21:42,628                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2025-09-08T00:21:42,628   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:42,628      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:42,628         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:42,629   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:42,629                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2025-09-08T00:21:42,629   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:42,629     117 |     struct unary_function
2025-09-08T00:21:42,629         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:47,534   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:47,534                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:47,535                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2025-09-08T00:21:47,535   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:47,535      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:47,535         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:47,535   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:47,535                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:47,535   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:47,535     117 |     struct unary_function
2025-09-08T00:21:47,535         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:51,748   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:51,748                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:51,748                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2025-09-08T00:21:51,748   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:51,749      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:51,749         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:51,749   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:51,749                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:51,749   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:51,749     117 |     struct unary_function
2025-09-08T00:21:51,749         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:55,304   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:55,304                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:55,304                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2025-09-08T00:21:55,304   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:55,304      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:55,304         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:55,305   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:55,305                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:55,305   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:55,305     117 |     struct unary_function
2025-09-08T00:21:55,306         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:58,962   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:21:58,963                    from ./base//sbml/Model.h:426,
2025-09-08T00:21:58,963                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2025-09-08T00:21:58,963   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:58,963      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:58,963         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:58,963   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:58,963                    from ./base//sbml/Model.h:424:
2025-09-08T00:21:58,963   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:58,963     117 |     struct unary_function
2025-09-08T00:21:58,964         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:02,599   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:22:02,600                    from ./base//sbml/Model.h:426,
2025-09-08T00:22:02,600                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2025-09-08T00:22:02,600   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:02,600      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:02,600         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:02,600   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:02,600                    from ./base//sbml/Model.h:424:
2025-09-08T00:22:02,601   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:02,601     117 |     struct unary_function
2025-09-08T00:22:02,601         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:06,256   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:22:06,256                    from ./base//sbml/Model.h:426,
2025-09-08T00:22:06,256                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2025-09-08T00:22:06,257   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:06,257      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:06,257         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:06,257   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:06,257                    from ./base//sbml/Model.h:424:
2025-09-08T00:22:06,257   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:06,257     117 |     struct unary_function
2025-09-08T00:22:06,257         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:09,897   In file included from ./base//sbml/UnitDefinition.h:257,
2025-09-08T00:22:09,897                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:22:09,897                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T00:22:09,897                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2025-09-08T00:22:09,897   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:09,897      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:09,898         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:09,898   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:09,898                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:22:09,898                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T00:22:09,898                    from ./base//sbml/SBO.h:197,
2025-09-08T00:22:09,898                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2025-09-08T00:22:09,898   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:09,898     117 |     struct unary_function
2025-09-08T00:22:09,898         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:13,609   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:22:13,609                    from ./base//sbml/Model.h:426,
2025-09-08T00:22:13,610                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2025-09-08T00:22:13,610   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:13,610      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:13,610         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:13,610   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:13,610                    from ./base//sbml/Model.h:424:
2025-09-08T00:22:13,610   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:13,610     117 |     struct unary_function
2025-09-08T00:22:13,610         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:17,537   In file included from ./base//sbml/FunctionDefinition.h:124,
2025-09-08T00:22:17,537                    from ./base//sbml/Model.h:426,
2025-09-08T00:22:17,537                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2025-09-08T00:22:17,537   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:17,537      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:17,537         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:17,538   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:17,538                    from ./base//sbml/Model.h:424:
2025-09-08T00:22:17,538   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:17,538     117 |     struct unary_function
2025-09-08T00:22:17,538         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:17,853   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:22:17,853   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:22:17,853     100 |   if (&(node) == NULL)
2025-09-08T00:22:17,854         |               ^
2025-09-08T00:22:17,854   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2025-09-08T00:22:17,854      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:22:17,854         |                                               ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:18,256   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:18,257     100 |   if (&(node) == NULL)
2025-09-08T00:22:18,257         |   ^~
2025-09-08T00:22:28,955   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T00:22:28,955   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:22:28,955      90 |   if (&orig == NULL)
2025-09-08T00:22:28,955         |             ^
2025-09-08T00:22:28,956   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2025-09-08T00:22:28,956      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2025-09-08T00:22:28,956         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:28,960   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T00:22:28,961   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:22:28,961     110 |   if (&rhs == NULL)
2025-09-08T00:22:28,961         |            ^
2025-09-08T00:22:28,961   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2025-09-08T00:22:28,961     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2025-09-08T00:22:28,961         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:28,963   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:22:28,963   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:22:28,963     149 |   if (&name == NULL || &value == NULL
2025-09-08T00:22:28,963         |             ^
2025-09-08T00:22:28,963   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2025-09-08T00:22:28,964     144 | XMLAttributes::add (const std::string& name,
2025-09-08T00:22:28,964         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:28,964   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:22:28,964     149 |   if (&name == NULL || &value == NULL
2025-09-08T00:22:28,964         |                               ^
2025-09-08T00:22:28,964   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2025-09-08T00:22:28,964     145 |                     const std::string& value,
2025-09-08T00:22:28,964         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:22:28,964   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2025-09-08T00:22:28,964     150 |                     || &namespaceURI == NULL
2025-09-08T00:22:28,965         |                                      ^
2025-09-08T00:22:28,965   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2025-09-08T00:22:28,965     146 |                     const std::string& namespaceURI,
2025-09-08T00:22:28,965         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T00:22:28,965   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:22:28,965     151 |                     || &prefix == NULL)
2025-09-08T00:22:28,965         |                                ^
2025-09-08T00:22:28,965   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2025-09-08T00:22:28,965     147 |                     const std::string& prefix)
2025-09-08T00:22:28,965         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:28,966   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T00:22:28,966   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:22:28,966     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:22:28,966         |               ^
2025-09-08T00:22:28,966   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2025-09-08T00:22:28,966     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T00:22:28,966         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:28,966   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:22:28,966     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:22:28,966         |                                 ^
2025-09-08T00:22:28,967   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2025-09-08T00:22:28,967     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T00:22:28,967         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:22:28,971   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T00:22:28,971   ./base/sbml/xml/XMLAttributes.cpp:279:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:22:28,972     279 |   if (&name == NULL) return -1;
2025-09-08T00:22:28,972         |             ^
2025-09-08T00:22:28,972   ./base/sbml/xml/XMLAttributes.cpp:277:45: note: ‘name’ declared here
2025-09-08T00:22:28,972     277 | XMLAttributes::getIndex (const std::string& name) const
2025-09-08T00:22:28,972         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:28,973   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T00:22:28,973   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:22:28,973     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T00:22:28,973         |             ^
2025-09-08T00:22:28,973   ./base/sbml/xml/XMLAttributes.cpp:297:45: note: ‘name’ declared here
2025-09-08T00:22:28,973     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T00:22:28,974         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:28,974   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:22:28,974     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T00:22:28,974         |                             ^
2025-09-08T00:22:28,974   ./base/sbml/xml/XMLAttributes.cpp:297:70: note: ‘uri’ declared here
2025-09-08T00:22:28,974     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T00:22:28,974         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:28,975   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T00:22:28,975   ./base/sbml/xml/XMLAttributes.cpp:318:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:22:28,975     318 |   if (&triple  == NULL) return -1;
2025-09-08T00:22:28,975         |                ^
2025-09-08T00:22:28,975   ./base/sbml/xml/XMLAttributes.cpp:316:43: note: ‘triple’ declared here
2025-09-08T00:22:28,975     316 | XMLAttributes::getIndex (const XMLTriple& triple) const
2025-09-08T00:22:28,975         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:28,980   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:28,981   ./base/sbml/xml/XMLAttributes.cpp:539:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:22:28,981     539 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T00:22:28,981         |                ^
2025-09-08T00:22:28,981   ./base/sbml/xml/XMLAttributes.cpp:527:41: note: ‘value’ declared here
2025-09-08T00:22:28,981     527 |                          , bool&        value
2025-09-08T00:22:28,981         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T00:22:28,983   ./base/sbml/xml/XMLAttributes.cpp:558:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:22:28,983     558 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T00:22:28,983         |                                          ^
2025-09-08T00:22:28,983   ./base/sbml/xml/XMLAttributes.cpp:526:47: note: ‘name’ declared here
2025-09-08T00:22:28,983     526 |                          , const std::string& name
2025-09-08T00:22:28,983         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:28,984   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:28,984   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:22:28,984     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T00:22:28,985         |               ^
2025-09-08T00:22:28,985   ./base/sbml/xml/XMLAttributes.cpp:609:45: note: ‘triple’ declared here
2025-09-08T00:22:28,985     609 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:22:28,985         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:28,985   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:22:28,985     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T00:22:28,985         |                                 ^
2025-09-08T00:22:28,985   ./base/sbml/xml/XMLAttributes.cpp:610:45: note: ‘value’ declared here
2025-09-08T00:22:28,985     610 |                          , bool&            value
2025-09-08T00:22:28,986         |                            ~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:22:28,986   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:28,986   ./base/sbml/xml/XMLAttributes.cpp:653:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:22:28,986     653 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T00:22:28,986         |                 ^
2025-09-08T00:22:28,986   ./base/sbml/xml/XMLAttributes.cpp:641:41: note: ‘value’ declared here
2025-09-08T00:22:28,986     641 |                          , double&      value
2025-09-08T00:22:28,986         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T00:22:28,989   ./base/sbml/xml/XMLAttributes.cpp:701:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:22:28,989     701 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T00:22:28,989         |                                          ^
2025-09-08T00:22:28,989   ./base/sbml/xml/XMLAttributes.cpp:640:47: note: ‘name’ declared here
2025-09-08T00:22:28,989     640 |                          , const std::string& name
2025-09-08T00:22:28,989         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:28,991   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:28,991   ./base/sbml/xml/XMLAttributes.cpp:799:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:22:28,991     799 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T00:22:28,992         |                                     ^
2025-09-08T00:22:28,992   ./base/sbml/xml/XMLAttributes.cpp:787:41: note: ‘value’ declared here
2025-09-08T00:22:28,992     787 |                          , long&        value
2025-09-08T00:22:28,992         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T00:22:28,992   ./base/sbml/xml/XMLAttributes.cpp:819:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:22:28,992     819 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T00:22:28,992         |                                          ^
2025-09-08T00:22:28,992   ./base/sbml/xml/XMLAttributes.cpp:786:65: note: ‘name’ declared here
2025-09-08T00:22:28,992     786 |                                            , const std::string& name
2025-09-08T00:22:28,993         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:28,993   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:28,993   ./base/sbml/xml/XMLAttributes.cpp:854:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:22:28,993     854 |   if (&triple == NULL) return false;
2025-09-08T00:22:28,993         |               ^
2025-09-08T00:22:28,993   ./base/sbml/xml/XMLAttributes.cpp:847:45: note: ‘triple’ declared here
2025-09-08T00:22:28,994     847 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:22:28,994         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:28,995   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:28,995   ./base/sbml/xml/XMLAttributes.cpp:943:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:22:28,995     943 |   if (&triple == NULL) return false;
2025-09-08T00:22:28,995         |               ^
2025-09-08T00:22:28,995   ./base/sbml/xml/XMLAttributes.cpp:936:45: note: ‘triple’ declared here
2025-09-08T00:22:28,995     936 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:22:28,996         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:28,997   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:28,997   ./base/sbml/xml/XMLAttributes.cpp:1035:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:22:28,997    1035 |   if (&triple == NULL) return false;
2025-09-08T00:22:28,997         |               ^
2025-09-08T00:22:28,997   ./base/sbml/xml/XMLAttributes.cpp:1028:45: note: ‘triple’ declared here
2025-09-08T00:22:28,997    1028 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:22:28,998         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:28,998   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:28,999   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:22:28,999    1089 |   if ( index != -1 && &value != NULL)
2025-09-08T00:22:28,999         |                              ^
2025-09-08T00:22:28,999   ./base/sbml/xml/XMLAttributes.cpp:1081:41: note: ‘value’ declared here
2025-09-08T00:22:28,999    1081 |                          , std::string& value
2025-09-08T00:22:28,999         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T00:22:28,999   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:22:29,000    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T00:22:29,000         |                                                      ^
2025-09-08T00:22:29,000   ./base/sbml/xml/XMLAttributes.cpp:1080:47: note: ‘name’ declared here
2025-09-08T00:22:29,000    1080 |                          , const std::string& name
2025-09-08T00:22:29,000         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:29,000   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,000   ./base/sbml/xml/XMLAttributes.cpp:1125:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:22:29,000    1125 |   if (&triple == NULL) return false;
2025-09-08T00:22:29,001         |               ^
2025-09-08T00:22:29,001   ./base/sbml/xml/XMLAttributes.cpp:1118:45: note: ‘triple’ declared here
2025-09-08T00:22:29,001    1118 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:22:29,001         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:29,371   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T00:22:29,371   ./base/sbml/xml/XMLAttributes.cpp:318:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,371     318 |   if (&triple  == NULL) return -1;
2025-09-08T00:22:29,371         |   ^~
2025-09-08T00:22:29,381   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T00:22:29,381   ./base/sbml/xml/XMLAttributes.cpp:279:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,381     279 |   if (&name == NULL) return -1;
2025-09-08T00:22:29,381         |   ^~
2025-09-08T00:22:29,382   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T00:22:29,382   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,382     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T00:22:29,382         |             ^
2025-09-08T00:22:29,382   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,382     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T00:22:29,382         |                             ^
2025-09-08T00:22:29,391   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T00:22:29,391   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,391      90 |   if (&orig == NULL)
2025-09-08T00:22:29,391         |   ^~
2025-09-08T00:22:29,392   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T00:22:29,392   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,392     110 |   if (&rhs == NULL)
2025-09-08T00:22:29,392         |   ^~
2025-09-08T00:22:29,401   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:22:29,401   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,401     149 |   if (&name == NULL || &value == NULL
2025-09-08T00:22:29,401         |             ^
2025-09-08T00:22:29,401   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,402     149 |   if (&name == NULL || &value == NULL
2025-09-08T00:22:29,402         |                               ^
2025-09-08T00:22:29,402   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,402     150 |                     || &namespaceURI == NULL
2025-09-08T00:22:29,402         |                                      ^
2025-09-08T00:22:29,402   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,402     151 |                     || &prefix == NULL)
2025-09-08T00:22:29,402         |                                ^
2025-09-08T00:22:29,402   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T00:22:29,402   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,402     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:22:29,403         |               ^
2025-09-08T00:22:29,403   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,403     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:22:29,403         |                                 ^
2025-09-08T00:22:29,403   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,403   ./base/sbml/xml/XMLAttributes.cpp:558:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,403     558 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T00:22:29,403         |                                 ^
2025-09-08T00:22:29,403   ./base/sbml/xml/XMLAttributes.cpp:539:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,403     539 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T00:22:29,403         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:22:29,404   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,404   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,404     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T00:22:29,404         |               ^
2025-09-08T00:22:29,404   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,404     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T00:22:29,404         |                                 ^
2025-09-08T00:22:29,404   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,404   ./base/sbml/xml/XMLAttributes.cpp:701:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,404     701 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T00:22:29,405         |                                 ^
2025-09-08T00:22:29,405   ./base/sbml/xml/XMLAttributes.cpp:653:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,405     653 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T00:22:29,405         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:22:29,405   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,405   ./base/sbml/xml/XMLAttributes.cpp:819:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,405     819 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T00:22:29,405         |                                 ^
2025-09-08T00:22:29,406   ./base/sbml/xml/XMLAttributes.cpp:799:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,406     799 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T00:22:29,406         |                           ^
2025-09-08T00:22:29,406   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,406   ./base/sbml/xml/XMLAttributes.cpp:854:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,406     854 |   if (&triple == NULL) return false;
2025-09-08T00:22:29,406         |   ^~
2025-09-08T00:22:29,406   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,406   ./base/sbml/xml/XMLAttributes.cpp:943:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,406     943 |   if (&triple == NULL) return false;
2025-09-08T00:22:29,407         |   ^~
2025-09-08T00:22:29,407   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,407   ./base/sbml/xml/XMLAttributes.cpp:1035:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,407    1035 |   if (&triple == NULL) return false;
2025-09-08T00:22:29,407         |   ^~
2025-09-08T00:22:29,407   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,407   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,407    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T00:22:29,407         |                                                      ^
2025-09-08T00:22:29,407   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,408    1089 |   if ( index != -1 && &value != NULL)
2025-09-08T00:22:29,408         |                              ^
2025-09-08T00:22:29,408   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:22:29,408   ./base/sbml/xml/XMLAttributes.cpp:1125:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:29,408    1125 |   if (&triple == NULL) return false;
2025-09-08T00:22:29,408         |   ^~
2025-09-08T00:22:36,912   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T00:22:36,913   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T00:22:36,913     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T00:22:36,913         |                       ^
2025-09-08T00:22:36,913   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T00:22:36,913     322 |                     , const std::string& details
2025-09-08T00:22:36,913         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:22:36,915   ./base/sbml/xml/XMLError.cpp:382:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T00:22:36,915     382 |     if ( &details != NULL && !details.empty() )
2025-09-08T00:22:36,915         |                   ^
2025-09-08T00:22:36,916   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T00:22:36,916     322 |                     , const std::string& details
2025-09-08T00:22:36,916         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:22:36,917   ./base/sbml/xml/XMLError.cpp:403:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T00:22:36,917     403 |   if (&details == NULL)
2025-09-08T00:22:36,917         |                ^
2025-09-08T00:22:36,917   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T00:22:36,917     322 |                     , const std::string& details
2025-09-08T00:22:36,917         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:22:36,921   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T00:22:36,921   ./base/sbml/xml/XMLError.cpp:428:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:22:36,921     428 |   if (&orig == NULL)
2025-09-08T00:22:36,921         |             ^
2025-09-08T00:22:36,922   ./base/sbml/xml/XMLError.cpp:426:36: note: ‘orig’ declared here
2025-09-08T00:22:36,922     426 | XMLError::XMLError(const XMLError& orig)
2025-09-08T00:22:36,922         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:36,924   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T00:22:36,924   ./base/sbml/xml/XMLError.cpp:455:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:22:36,925     455 |   if (&rhs == NULL)
2025-09-08T00:22:36,925         |            ^
2025-09-08T00:22:36,925   ./base/sbml/xml/XMLError.cpp:453:37: note: ‘rhs’ declared here
2025-09-08T00:22:36,925     453 | XMLError::operator=(const XMLError& rhs)
2025-09-08T00:22:36,925         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:37,263   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T00:22:37,263   ./base/sbml/xml/XMLError.cpp:428:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:37,264     428 |   if (&orig == NULL)
2025-09-08T00:22:37,264         |   ^~
2025-09-08T00:22:37,264   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T00:22:37,265   ./base/sbml/xml/XMLError.cpp:455:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:37,265     455 |   if (&rhs == NULL)
2025-09-08T00:22:37,265         |   ^~
2025-09-08T00:22:37,268   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T00:22:37,268   ./base/sbml/xml/XMLError.cpp:403:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:37,268     403 |   if (&details == NULL)
2025-09-08T00:22:37,268         |   ^~
2025-09-08T00:22:37,268   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:37,269     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T00:22:37,269         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:22:37,269   ./base/sbml/xml/XMLError.cpp:382:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:37,269     382 |     if ( &details != NULL && !details.empty() )
2025-09-08T00:22:37,269         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:22:40,285   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:40,285      96 | struct Delete : public unary_function<XMLError*, void>
2025-09-08T00:22:40,285         |                        ^~~~~~~~~~~~~~
2025-09-08T00:22:40,286   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:22:40,286                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2025-09-08T00:22:40,286   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:40,286     117 |     struct unary_function
2025-09-08T00:22:40,286         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:40,289   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2025-09-08T00:22:40,289   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2025-09-08T00:22:40,289     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T00:22:40,289         |              ^
2025-09-08T00:22:40,289   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2025-09-08T00:22:40,289     118 | XMLErrorLog::add (const XMLError& error)
2025-09-08T00:22:40,289         |                   ~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:22:40,535   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,536     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T00:22:40,536         |   ^~
2025-09-08T00:22:42,500   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T00:22:42,500   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:22:42,500      57 |   if (&filename == NULL) return;
2025-09-08T00:22:42,500         |                 ^
2025-09-08T00:22:42,500   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2025-09-08T00:22:42,501      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2025-09-08T00:22:42,501         |                               ~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:22:42,653   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T00:22:42,653   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:42,653      57 |   if (&filename == NULL) return;
2025-09-08T00:22:42,653         |   ^~
2025-09-08T00:22:50,603   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T00:22:50,603   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:22:50,603      76 |   if (&orig == NULL)
2025-09-08T00:22:50,603         |             ^
2025-09-08T00:22:50,603   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2025-09-08T00:22:50,604      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2025-09-08T00:22:50,604         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:50,607   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T00:22:50,607   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:22:50,607      93 |   if (&rhs == NULL)
2025-09-08T00:22:50,607         |            ^
2025-09-08T00:22:50,608   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2025-09-08T00:22:50,608      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2025-09-08T00:22:50,608         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:50,609   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T00:22:50,610   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:22:50,610     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:22:50,610         |            ^
2025-09-08T00:22:50,610   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2025-09-08T00:22:50,610     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T00:22:50,610         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:50,610   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:22:50,611     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:22:50,611         |                               ^
2025-09-08T00:22:50,611   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2025-09-08T00:22:50,611     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T00:22:50,611         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:50,627   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T00:22:50,627   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:22:50,627     322 |   if (&prefix == NULL) return std::string();
2025-09-08T00:22:50,627         |               ^
2025-09-08T00:22:50,628   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2025-09-08T00:22:50,628     320 | XMLNamespaces::getURI (const std::string& prefix) const
2025-09-08T00:22:50,628         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:50,630   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T00:22:50,630   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:22:50,630     348 |   if (&uri == NULL) return false;
2025-09-08T00:22:50,630         |            ^
2025-09-08T00:22:50,630   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2025-09-08T00:22:50,630     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2025-09-08T00:22:50,630         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:50,631   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T00:22:50,631   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:22:50,631     359 |   if (&prefix == NULL) return false;
2025-09-08T00:22:50,632         |               ^
2025-09-08T00:22:50,632   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2025-09-08T00:22:50,632     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2025-09-08T00:22:50,632         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:50,633   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T00:22:50,633   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:22:50,633     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T00:22:50,633         |            ^
2025-09-08T00:22:50,633   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2025-09-08T00:22:50,633     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T00:22:50,633         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:50,634   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:22:50,634     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T00:22:50,634         |                               ^
2025-09-08T00:22:50,634   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2025-09-08T00:22:50,634     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T00:22:50,634         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:51,024   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T00:22:51,025   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:51,025     322 |   if (&prefix == NULL) return std::string();
2025-09-08T00:22:51,025         |   ^~
2025-09-08T00:22:51,026   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T00:22:51,026   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:51,026     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T00:22:51,026         |            ^
2025-09-08T00:22:51,026   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:51,026     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T00:22:51,027         |                               ^
2025-09-08T00:22:51,028   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T00:22:51,028   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:51,028     348 |   if (&uri == NULL) return false;
2025-09-08T00:22:51,028         |   ^~
2025-09-08T00:22:51,029   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T00:22:51,029   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:51,029     359 |   if (&prefix == NULL) return false;
2025-09-08T00:22:51,029         |   ^~
2025-09-08T00:22:51,036   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T00:22:51,036   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:51,036      76 |   if (&orig == NULL)
2025-09-08T00:22:51,036         |   ^~
2025-09-08T00:22:51,037   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T00:22:51,037   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:51,037      93 |   if (&rhs == NULL)
2025-09-08T00:22:51,037         |   ^~
2025-09-08T00:22:51,040   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T00:22:51,040   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:51,040     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:22:51,040         |            ^
2025-09-08T00:22:51,040   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:51,040     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:22:51,040         |                               ^
2025-09-08T00:22:55,413   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T00:22:55,413   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:22:55,413     197 |   if (&rhs == NULL)
2025-09-08T00:22:55,413         |            ^
2025-09-08T00:22:55,414   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2025-09-08T00:22:55,414     195 | XMLNode::operator=(const XMLNode& rhs)
2025-09-08T00:22:55,414         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:55,416   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T00:22:55,416   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:22:55,416     230 |   if (&(node) == NULL)
2025-09-08T00:22:55,416         |               ^
2025-09-08T00:22:55,416   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2025-09-08T00:22:55,417     226 | XMLNode::addChild (const XMLNode& node)
2025-09-08T00:22:55,417         |                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:55,418   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T00:22:55,418   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:22:55,418     267 |   if (&(node) == NULL)
2025-09-08T00:22:55,418         |               ^
2025-09-08T00:22:55,418   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2025-09-08T00:22:55,418     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2025-09-08T00:22:55,418         |                                       ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:55,424   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T00:22:55,424   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:22:55,424     413 |   if (&name == NULL) return -1;
2025-09-08T00:22:55,425         |             ^
2025-09-08T00:22:55,425   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2025-09-08T00:22:55,425     411 | XMLNode::getIndex (const std::string& name) const
2025-09-08T00:22:55,425         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:55,426   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T00:22:55,427   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2025-09-08T00:22:55,427     435 |   if (&other == NULL) return false;
2025-09-08T00:22:55,427         |              ^
2025-09-08T00:22:55,427   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2025-09-08T00:22:55,427     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2025-09-08T00:22:55,427         |                 ~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:22:55,434   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T00:22:55,434   ./base/sbml/xml/XMLNode.cpp:507:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:55,434     507 |   if (&stream == NULL) return;
2025-09-08T00:22:55,434         |               ^
2025-09-08T00:22:55,434   ./base/sbml/xml/XMLNode.cpp:505:34: note: ‘stream’ declared here
2025-09-08T00:22:55,434     505 | XMLNode::write (XMLOutputStream& stream) const
2025-09-08T00:22:55,434         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:55,438   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T00:22:55,439   ./base/sbml/xml/XMLNode.cpp:577:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2025-09-08T00:22:55,439     577 |   if (&xmlstr == NULL) return NULL;
2025-09-08T00:22:55,439         |               ^
2025-09-08T00:22:55,439   ./base/sbml/xml/XMLNode.cpp:575:61: note: ‘xmlstr’ declared here
2025-09-08T00:22:55,439     575 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2025-09-08T00:22:55,439         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:55,905   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T00:22:55,905   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:55,905     413 |   if (&name == NULL) return -1;
2025-09-08T00:22:55,905         |   ^~
2025-09-08T00:22:55,906   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T00:22:55,906   ./base/sbml/xml/XMLNode.cpp:507:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:55,906     507 |   if (&stream == NULL) return;
2025-09-08T00:22:55,906         |   ^~
2025-09-08T00:22:55,924   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T00:22:55,924   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:55,924     197 |   if (&rhs == NULL)
2025-09-08T00:22:55,925         |   ^~
2025-09-08T00:22:55,927   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T00:22:55,927   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:55,927     230 |   if (&(node) == NULL)
2025-09-08T00:22:55,927         |   ^~
2025-09-08T00:22:55,929   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T00:22:55,929   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:55,929     267 |   if (&(node) == NULL)
2025-09-08T00:22:55,929         |   ^~
2025-09-08T00:22:55,932   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T00:22:55,932   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:55,933     435 |   if (&other == NULL) return false;
2025-09-08T00:22:55,933         |   ^~
2025-09-08T00:22:55,935   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T00:22:55,935   ./base/sbml/xml/XMLNode.cpp:577:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:55,935     577 |   if (&xmlstr == NULL) return NULL;
2025-09-08T00:22:55,935         |   ^~
2025-09-08T00:23:02,236   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T00:23:02,236   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:23:02,236     220 |   if (&stream == NULL)
2025-09-08T00:23:02,236         |               ^
2025-09-08T00:23:02,236   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2025-09-08T00:23:02,236     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2025-09-08T00:23:02,237         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:02,239   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T00:23:02,239   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:02,239     236 |   if(&name == NULL) return;
2025-09-08T00:23:02,239         |            ^
2025-09-08T00:23:02,239   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2025-09-08T00:23:02,240     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2025-09-08T00:23:02,240         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:02,243   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T00:23:02,243   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:23:02,243     270 |   if(&triple == NULL) return;
2025-09-08T00:23:02,243         |              ^
2025-09-08T00:23:02,244   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2025-09-08T00:23:02,244     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2025-09-08T00:23:02,244         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:02,247   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T00:23:02,247   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:02,247     313 |   if (&name == NULL) return;
2025-09-08T00:23:02,247         |             ^
2025-09-08T00:23:02,248   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2025-09-08T00:23:02,248     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2025-09-08T00:23:02,248         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:02,249   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T00:23:02,249   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:23:02,250     344 |   if (&triple == NULL) return;
2025-09-08T00:23:02,250         |               ^
2025-09-08T00:23:02,250   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2025-09-08T00:23:02,250     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2025-09-08T00:23:02,250         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:02,252   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T00:23:02,252   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:02,252     374 |   if (&name == NULL) return;
2025-09-08T00:23:02,252         |             ^
2025-09-08T00:23:02,252   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2025-09-08T00:23:02,252     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2025-09-08T00:23:02,252         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:02,254   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T00:23:02,255   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:23:02,255     409 |   if (&triple == NULL) return;
2025-09-08T00:23:02,255         |               ^
2025-09-08T00:23:02,255   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2025-09-08T00:23:02,255     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2025-09-08T00:23:02,255         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:02,257   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T00:23:02,257   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:02,258     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T00:23:02,258         |              ^
2025-09-08T00:23:02,258   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2025-09-08T00:23:02,258     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T00:23:02,258         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:02,258   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:23:02,258     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T00:23:02,259         |                                ^
2025-09-08T00:23:02,259   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2025-09-08T00:23:02,259     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T00:23:02,259         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:23:02,264   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T00:23:02,265   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:02,265     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,265         |             ^
2025-09-08T00:23:02,265   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2025-09-08T00:23:02,265     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T00:23:02,265         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:02,265   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:23:02,266     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,266         |                               ^
2025-09-08T00:23:02,266   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2025-09-08T00:23:02,266     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T00:23:02,266         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T00:23:02,268   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T00:23:02,268   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:23:02,268     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,268         |               ^
2025-09-08T00:23:02,269   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2025-09-08T00:23:02,269     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T00:23:02,269         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:02,269   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:23:02,269     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,269         |                                 ^
2025-09-08T00:23:02,269   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2025-09-08T00:23:02,270     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T00:23:02,270         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T00:23:02,271   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T00:23:02,271   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:02,271     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,271         |             ^
2025-09-08T00:23:02,272   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2025-09-08T00:23:02,272     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T00:23:02,272         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:02,272   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:23:02,272     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,272         |                               ^
2025-09-08T00:23:02,272   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2025-09-08T00:23:02,272     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T00:23:02,272         |                                                           ~~~~~~~~~~~~~~^~~~~
2025-09-08T00:23:02,274   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T00:23:02,274   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:02,274     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,274         |             ^
2025-09-08T00:23:02,274   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2025-09-08T00:23:02,274     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T00:23:02,275         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:02,275   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:23:02,275     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,275         |                               ^
2025-09-08T00:23:02,275   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2025-09-08T00:23:02,275     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T00:23:02,275         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T00:23:02,278   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T00:23:02,278   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:02,278     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,278         |             ^
2025-09-08T00:23:02,279   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2025-09-08T00:23:02,279     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T00:23:02,279         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:02,279   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:23:02,279     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,279         |                               ^
2025-09-08T00:23:02,279   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2025-09-08T00:23:02,279     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T00:23:02,280         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T00:23:02,282   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T00:23:02,282   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:23:02,282     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,282         |               ^
2025-09-08T00:23:02,282   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2025-09-08T00:23:02,282     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T00:23:02,282         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:02,283   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:23:02,283     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,283         |                                 ^
2025-09-08T00:23:02,283   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2025-09-08T00:23:02,283     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T00:23:02,283         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T00:23:02,284   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T00:23:02,285   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:02,285     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,285         |             ^
2025-09-08T00:23:02,285   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2025-09-08T00:23:02,285     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T00:23:02,285         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:02,285   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:23:02,285     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,286         |                               ^
2025-09-08T00:23:02,286   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2025-09-08T00:23:02,286     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T00:23:02,286         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:23:02,288   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T00:23:02,288   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:23:02,288     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,288         |               ^
2025-09-08T00:23:02,288   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2025-09-08T00:23:02,289     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2025-09-08T00:23:02,289         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:02,289   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:23:02,289     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,289         |                                 ^
2025-09-08T00:23:02,289   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2025-09-08T00:23:02,289     734 |                                  , const unsigned int&  value )
2025-09-08T00:23:02,290         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:23:02,683   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T00:23:02,683   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,683     236 |   if(&name == NULL) return;
2025-09-08T00:23:02,683         |   ^~
2025-09-08T00:23:02,684   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T00:23:02,684   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,684     313 |   if (&name == NULL) return;
2025-09-08T00:23:02,684         |   ^~
2025-09-08T00:23:02,685   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T00:23:02,685   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,685     374 |   if (&name == NULL) return;
2025-09-08T00:23:02,685         |   ^~
2025-09-08T00:23:02,686   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T00:23:02,686   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,686     270 |   if(&triple == NULL) return;
2025-09-08T00:23:02,686         |   ^~
2025-09-08T00:23:02,687   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T00:23:02,687   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,687     344 |   if (&triple == NULL) return;
2025-09-08T00:23:02,687         |   ^~
2025-09-08T00:23:02,688   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T00:23:02,688   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,688     409 |   if (&triple == NULL) return;
2025-09-08T00:23:02,688         |   ^~
2025-09-08T00:23:02,689   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T00:23:02,689   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,689     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,689         |               ^
2025-09-08T00:23:02,689   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,689     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,689         |                                 ^
2025-09-08T00:23:02,690   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T00:23:02,690   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,690     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,690         |               ^
2025-09-08T00:23:02,691   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,691     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,691         |                                 ^
2025-09-08T00:23:02,691   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T00:23:02,692   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,692     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,692         |               ^
2025-09-08T00:23:02,692   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,692     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:23:02,692         |                                 ^
2025-09-08T00:23:02,693   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T00:23:02,693   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,693     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T00:23:02,693         |              ^
2025-09-08T00:23:02,694   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,694     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T00:23:02,694         |                                ^
2025-09-08T00:23:02,694   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T00:23:02,694   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,695     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,695         |             ^
2025-09-08T00:23:02,695   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,695     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,695         |                               ^
2025-09-08T00:23:02,695   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T00:23:02,696   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,696     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,696         |             ^
2025-09-08T00:23:02,696   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,696     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,696         |                               ^
2025-09-08T00:23:02,697   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T00:23:02,697   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,697     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,697         |             ^
2025-09-08T00:23:02,697   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,697     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,697         |                               ^
2025-09-08T00:23:02,698   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T00:23:02,698   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,698     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,698         |             ^
2025-09-08T00:23:02,698   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,698     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,698         |                               ^
2025-09-08T00:23:02,699   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T00:23:02,699   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,699     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,699         |             ^
2025-09-08T00:23:02,699   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,700     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:23:02,700         |                               ^
2025-09-08T00:23:02,704   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T00:23:02,705   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:02,705     220 |   if (&stream == NULL)
2025-09-08T00:23:02,705         |   ^~
2025-09-08T00:23:09,028   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T00:23:09,028   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2025-09-08T00:23:09,028     132 |   if (&chars == NULL)
2025-09-08T00:23:09,028         |              ^
2025-09-08T00:23:09,028   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2025-09-08T00:23:09,029     123 | XMLToken::XMLToken (  const std::string&  chars
2025-09-08T00:23:09,029         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:23:09,031   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T00:23:09,032   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:23:09,032     156 |   if (&orig == NULL)
2025-09-08T00:23:09,032         |             ^
2025-09-08T00:23:09,032   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2025-09-08T00:23:09,032     154 | XMLToken::XMLToken(const XMLToken& orig)
2025-09-08T00:23:09,032         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:09,035   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T00:23:09,035   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:23:09,036     195 |   if (&rhs == NULL)
2025-09-08T00:23:09,036         |            ^
2025-09-08T00:23:09,036   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2025-09-08T00:23:09,036     193 | XMLToken::operator=(const XMLToken& rhs)
2025-09-08T00:23:09,036         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T00:23:09,039   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T00:23:09,040   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:23:09,040     312 |         if(&attributes == NULL)
2025-09-08T00:23:09,040         |                        ^
2025-09-08T00:23:09,040   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2025-09-08T00:23:09,040     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2025-09-08T00:23:09,040         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:23:09,045   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T00:23:09,046   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2025-09-08T00:23:09,046     783 |         if(&namespaces == NULL)
2025-09-08T00:23:09,046         |                        ^
2025-09-08T00:23:09,046   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2025-09-08T00:23:09,046     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2025-09-08T00:23:09,046         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:23:09,047   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T00:23:09,047   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:23:09,047     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:23:09,047         |            ^
2025-09-08T00:23:09,048   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2025-09-08T00:23:09,048     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T00:23:09,048         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:23:09,048   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:23:09,048     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:23:09,048         |                               ^
2025-09-08T00:23:09,048   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2025-09-08T00:23:09,049     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T00:23:09,049         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:09,052   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T00:23:09,052   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:23:09,052    1058 |         if(&triple == NULL)
2025-09-08T00:23:09,052         |                    ^
2025-09-08T00:23:09,053   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2025-09-08T00:23:09,053    1055 | XMLToken::setTriple(const XMLTriple& triple)
2025-09-08T00:23:09,053         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:09,283   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T00:23:09,283   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:09,283     312 |         if(&attributes == NULL)
2025-09-08T00:23:09,283         |         ^~
2025-09-08T00:23:09,285   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T00:23:09,285   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:09,286     783 |         if(&namespaces == NULL)
2025-09-08T00:23:09,286         |         ^~
2025-09-08T00:23:09,286   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T00:23:09,286   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:09,286     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:23:09,286         |            ^
2025-09-08T00:23:09,287   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:09,287     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:23:09,287         |                               ^
2025-09-08T00:23:09,288   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T00:23:09,288   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:09,288    1058 |         if(&triple == NULL)
2025-09-08T00:23:09,288         |         ^~
2025-09-08T00:23:09,304   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T00:23:09,305   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:09,305     132 |   if (&chars == NULL)
2025-09-08T00:23:09,305         |   ^~
2025-09-08T00:23:09,306   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T00:23:09,306   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:09,307     156 |   if (&orig == NULL)
2025-09-08T00:23:09,307         |   ^~
2025-09-08T00:23:09,308   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T00:23:09,308   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:09,308     195 |   if (&rhs == NULL)
2025-09-08T00:23:09,308         |   ^~
2025-09-08T00:23:14,051   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T00:23:14,051   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:23:14,051     188 |   if (&element == NULL) return;
2025-09-08T00:23:14,052         |                ^
2025-09-08T00:23:14,052   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2025-09-08T00:23:14,052     186 | XMLTokenizer::startElement (const XMLToken& element)
2025-09-08T00:23:14,052         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:23:14,053   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T00:23:14,053   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:23:14,053     234 |   else if (&element != NULL)
2025-09-08T00:23:14,053         |                     ^
2025-09-08T00:23:14,054   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2025-09-08T00:23:14,054     220 | XMLTokenizer::endElement (const XMLToken& element)
2025-09-08T00:23:14,054         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:23:14,054   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T00:23:14,055   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2025-09-08T00:23:14,055     247 |   if (&data == NULL) return;
2025-09-08T00:23:14,055         |             ^
2025-09-08T00:23:14,055   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2025-09-08T00:23:14,055     245 | XMLTokenizer::characters (const XMLToken& data)
2025-09-08T00:23:14,055         |                           ~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:14,326   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T00:23:14,326   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:14,326     188 |   if (&element == NULL) return;
2025-09-08T00:23:14,326         |   ^~
2025-09-08T00:23:14,326   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T00:23:14,327   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:14,327     234 |   else if (&element != NULL)
2025-09-08T00:23:14,327         |        ^~
2025-09-08T00:23:14,327   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T00:23:14,327   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:14,327     247 |   if (&data == NULL) return;
2025-09-08T00:23:14,328         |   ^~
2025-09-08T00:23:17,373   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:23:17,373   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:23:17,373      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:23:17,373         |              ^
2025-09-08T00:23:17,373   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2025-09-08T00:23:17,374      58 | XMLTriple::XMLTriple (  const std::string&  name
2025-09-08T00:23:17,374         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:17,374   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:23:17,374      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:23:17,374         |                                ^
2025-09-08T00:23:17,374   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2025-09-08T00:23:17,374      59 |                       , const std::string&  uri
2025-09-08T00:23:17,375         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:23:17,375   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:23:17,375      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:23:17,375         |                                                     ^
2025-09-08T00:23:17,375   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2025-09-08T00:23:17,375      60 |                       , const std::string&  prefix )
2025-09-08T00:23:17,375         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:17,378   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T00:23:17,378   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2025-09-08T00:23:17,378      81 |   if (&triplet == NULL)
2025-09-08T00:23:17,378         |                ^
2025-09-08T00:23:17,378   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2025-09-08T00:23:17,378      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2025-09-08T00:23:17,378         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:23:17,382   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T00:23:17,382   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:23:17,382     117 |   if (&orig == NULL)
2025-09-08T00:23:17,382         |             ^
2025-09-08T00:23:17,382   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2025-09-08T00:23:17,382     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2025-09-08T00:23:17,382         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:23:17,384   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T00:23:17,384   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:23:17,384     136 |   if (&rhs == NULL)
2025-09-08T00:23:17,384         |            ^
2025-09-08T00:23:17,385   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2025-09-08T00:23:17,385     134 | XMLTriple::operator=(const XMLTriple& rhs)
2025-09-08T00:23:17,385         |                      ~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:23:17,544   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:23:17,545   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:17,545      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:23:17,545         |       ~~~~~~~^~~~~~~~
2025-09-08T00:23:17,545   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:17,545      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:23:17,545         |                          ~~~~~~^~~~~~~~
2025-09-08T00:23:17,546   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:17,546      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:23:17,546         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T00:23:17,546   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T00:23:17,546   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:17,547     117 |   if (&orig == NULL)
2025-09-08T00:23:17,547         |   ^~
2025-09-08T00:23:17,547   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T00:23:17,548   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:17,548     136 |   if (&rhs == NULL)
2025-09-08T00:23:17,548         |   ^~
2025-09-08T00:23:17,549   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T00:23:17,550   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:17,550      81 |   if (&triplet == NULL)
2025-09-08T00:23:17,550         |   ^~
2025-09-08T00:23:23,647   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T00:23:23,648   !!

2025-09-08T00:23:23,648           ********************************************************************************
2025-09-08T00:23:23,648           Please avoid running ``setup.py`` directly.
2025-09-08T00:23:23,648           Instead, use pypa/build, pypa/installer or other
2025-09-08T00:23:23,648           standards-based tools.

2025-09-08T00:23:23,648           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T00:23:23,649           or your builds will no longer be supported.

2025-09-08T00:23:23,649           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T00:23:23,649           ********************************************************************************

2025-09-08T00:23:23,649   !!
2025-09-08T00:23:23,649     self.initialize_options()
2025-09-08T00:23:40,659   Building wheel for python-libsbml (setup.py): finished with status 'done'
2025-09-08T00:23:40,983   Created wheel for python-libsbml: filename=python_libsbml-5.10.1-cp313-cp313-linux_armv7l.whl size=32463026 sha256=6bff6959ed7c7720928e60e4bf6c80864e16dd558367d38f266ca4c633177080
2025-09-08T00:23:40,984   Stored in directory: /tmp/pip-ephem-wheel-cache-iz5qdkrl/wheels/c7/d6/1f/34cfff9e49926afad52b71d7bd771bb559376c0cdc2da9162f
2025-09-08T00:23:40,991 Successfully built python-libsbml
2025-09-08T00:23:41,057 Removed build tracker: '/tmp/pip-build-tracker-b5k5jdja'