2025-09-08T00:37:23,231 Created temporary directory: /tmp/pip-build-tracker-51rk3ju0 2025-09-08T00:37:23,232 Initialized build tracking at /tmp/pip-build-tracker-51rk3ju0 2025-09-08T00:37:23,232 Created build tracker: /tmp/pip-build-tracker-51rk3ju0 2025-09-08T00:37:23,232 Entered build tracker: /tmp/pip-build-tracker-51rk3ju0 2025-09-08T00:37:23,232 Created temporary directory: /tmp/pip-wheel-799gv2bg 2025-09-08T00:37:23,236 Created temporary directory: /tmp/pip-ephem-wheel-cache-bkuq1lrh 2025-09-08T00:37:23,292 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T00:37:23,294 2 location(s) to search for versions of scikit-bio: 2025-09-08T00:37:23,294 * https://pypi.org/simple/scikit-bio/ 2025-09-08T00:37:23,294 * https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T00:37:23,295 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2025-09-08T00:37:23,295 Getting page https://pypi.org/simple/scikit-bio/ 2025-09-08T00:37:23,296 Found index url https://pypi.org/simple/ 2025-09-08T00:37:23,366 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2025-09-08T00:37:23,372 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2025-09-08T00:37:23,372 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2025-09-08T00:37:23,373 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2025-09-08T00:37:23,373 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2025-09-08T00:37:23,373 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2025-09-08T00:37:23,373 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2025-09-08T00:37:23,374 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2025-09-08T00:37:23,374 Found link 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https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2025-09-08T00:37:23,376 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2025-09-08T00:37:23,376 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2025-09-08T00:37:23,376 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2025-09-08T00:37:23,376 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2025-09-08T00:37:23,377 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2025-09-08T00:37:23,377 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2025-09-08T00:37:23,377 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2025-09-08T00:37:23,377 Found link https://files.pythonhosted.org/packages/9d/77/531cf69c99cb398c5abf8545259b88ee256bfdb72e5972bcfdbcb9942751/scikit-bio-0.6.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.0 2025-09-08T00:37:23,378 Found link https://files.pythonhosted.org/packages/12/6b/1a01f3df88503d9a11916972f0b0c2aed13d516f159336b4bdcfcd04098a/scikit-bio-0.6.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.1 2025-09-08T00:37:23,378 Found link https://files.pythonhosted.org/packages/29/28/07326aa931c67d491d3053e2875b6c8f2904e661d9ab7c2840c3ae6b3780/scikit-bio-0.6.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.2 2025-09-08T00:37:23,378 Found link https://files.pythonhosted.org/packages/65/59/31e499edc0d045acab799b7117130e9c9de22371be57ac311f2f0b235dc4/scikit-bio-0.6.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.3 2025-09-08T00:37:23,378 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/59/8b/f90ee0325c7f59573bdf8d4a5a5717ca710f067a081fd46f3768600a200d/scikit_bio-0.7.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,378 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/57/c6/0864476e63935459eb4d474f210e70ca1b0aa9689bb1beccbeae582587ce/scikit_bio-0.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,379 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/ca/087675f3fd6608142be8c53e6875a1a730e0fa1250a85421677570445839/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,379 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c8/69/da203001d9a0d4f2dc14426617e5eed76c9ff059f6c2a94023bf48e204cb/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,379 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/45/97/3b928b1f075a6033326244e125f0e3a518fe75c17278359d1835ca4ccb24/scikit_bio-0.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,379 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/66/5f238ff8fa25080d5baf82287297bfd1e6dbeab45ef3ff1b0f6e1a7c017e/scikit_bio-0.7.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,379 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f9/8b/8ef6e40a818067bdaf57fa779eadbc8ef73f333dbd50fb09daeae13de1f2/scikit_bio-0.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,379 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f0/66/6cb6e9ba1e67f65a27b34fcd33b457cb0fea73f93dc184ea1bf38562f012/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,379 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/27/e359f131018cf988f1e4f5e7380db7db43ba4202ffc9ba9e8f6cfb1988f5/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,380 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/db/99/6b0ce81f81e2cfe06c899455b149e7f8393cd3ba9a8905efe18c36894420/scikit_bio-0.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,380 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/43/9b/bf339d439568a4fa0ab6e7e545c4487b1cf86e6245f98be0d922f4677ddc/scikit_bio-0.7.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,380 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1d/e9/7a5dd2e04bbd361907f5a1942fa4b6aeecfa453801f4c047c55b51036df2/scikit_bio-0.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,380 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/19/4b/b63123cf09c3375fa90cbfc02febf32cc20429a49c03d71f37febed7c52d/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,380 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f5/02/b178ca48305a230e080732dd02233e0824b1a9b41b273acf2444de116be2/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,380 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5f/a8/199cafe05bb77bf274f0a3db8f5199f4b2966db37589f9e5ec6a212c0b9c/scikit_bio-0.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,380 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d4/31/b943fcf7d4579b4751002ad9a48e62e9f0c7db542dd440f7e3e82f50f58b/scikit_bio-0.7.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,381 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e7/af/5f3452f0dce0f0a3c7ccb9f067e410b50a8d188c4fb56426f8785317333d/scikit_bio-0.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,381 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7d/20/ef1d2a8accb946cc31b5b987a46d197f69d1e89bab76b5e9cb4235a355f9/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,381 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/46/3f05eedb58e13c21f5ab7496e9735da2f008aa66038b268ea46138a3e48d/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,381 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/40/e9/2f7d72ef933e9328b929295ada98ad2c5fbdc5b3c6bd2f4d886f14d4f90a/scikit_bio-0.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,381 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b5/fa/3a7770c445111c6b957aba701887f22506faef8145965a6b9d2816cfd896/scikit_bio-0.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,381 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4e/07/e2a29ccbb31208c98ff2c7b61b00614885f781474891ebf249d85495e238/scikit_bio-0.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,381 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/89/15/829f7da8e5083f4d2e3dd1ef24faa6b32da2bf492547bd6d385e92fda127/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,381 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4a/34/687f9e4dc73e39a56277e2aa900577fccb3c99ef28a5acc5fc258028e2ac/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,382 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6c/a5/75fd40c8bf70836216fffe57bdd80c78959d5cc21c23927ada892b246f3d/scikit_bio-0.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T00:37:23,382 Found link https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9), version: 0.7.0 2025-09-08T00:37:23,383 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T00:37:23,383 Getting page https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T00:37:23,384 Found index url https://www.piwheels.org/simple/ 2025-09-08T00:37:23,690 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2025-09-08T00:37:23,702 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv6l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,702 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv7l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,702 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,703 Skipping link: No binaries permitted for scikit-bio: 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https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,705 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,706 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,706 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,706 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,706 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,706 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,707 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv6l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,707 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv7l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,707 Skipping link: No binaries permitted for scikit-bio: 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https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,708 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,709 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,709 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T00:37:23,709 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T00:37:23,709 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2025-09-08T00:37:23,737 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2025-09-08T00:37:23,738 Collecting scikit-bio==0.2.1 2025-09-08T00:37:23,739 Created temporary directory: /tmp/pip-unpack-6cuibxls 2025-09-08T00:37:24,065 Downloading scikit-bio-0.2.1.tar.gz (7.9 MB) 2025-09-08T00:37:26,228 Added scikit-bio==0.2.1 from https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-51rk3ju0' 2025-09-08T00:37:26,229 Running setup.py (path:/tmp/pip-wheel-799gv2bg/scikit-bio_2f09b4de46544213a97214a76132db38/setup.py) egg_info for package scikit-bio 2025-09-08T00:37:26,229 Created temporary directory: /tmp/pip-pip-egg-info-329_2b37 2025-09-08T00:37:26,229 Preparing metadata (setup.py): started 2025-09-08T00:37:26,230 Running command python setup.py egg_info 2025-09-08T00:37:27,214 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T00:37:27,214 warnings.warn(msg) 2025-09-08T00:37:27,626 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T00:37:27,626 !! 2025-09-08T00:37:27,626 ******************************************************************************** 2025-09-08T00:37:27,627 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T00:37:27,627 License :: OSI Approved :: BSD License 2025-09-08T00:37:27,627 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T00:37:27,627 ******************************************************************************** 2025-09-08T00:37:27,627 !! 2025-09-08T00:37:27,627 self._finalize_license_expression() 2025-09-08T00:37:27,700 running egg_info 2025-09-08T00:37:27,774 creating /tmp/pip-pip-egg-info-329_2b37/scikit_bio.egg-info 2025-09-08T00:37:27,774 writing /tmp/pip-pip-egg-info-329_2b37/scikit_bio.egg-info/PKG-INFO 2025-09-08T00:37:27,778 writing dependency_links to /tmp/pip-pip-egg-info-329_2b37/scikit_bio.egg-info/dependency_links.txt 2025-09-08T00:37:27,780 writing requirements to /tmp/pip-pip-egg-info-329_2b37/scikit_bio.egg-info/requires.txt 2025-09-08T00:37:27,780 writing top-level names to /tmp/pip-pip-egg-info-329_2b37/scikit_bio.egg-info/top_level.txt 2025-09-08T00:37:27,781 writing manifest file '/tmp/pip-pip-egg-info-329_2b37/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T00:37:28,115 reading manifest file '/tmp/pip-pip-egg-info-329_2b37/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T00:37:28,116 reading manifest template 'MANIFEST.in' 2025-09-08T00:37:28,134 no previously-included directories found matching 'doc/build' 2025-09-08T00:37:28,136 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-08T00:37:28,138 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-08T00:37:28,138 adding license file 'COPYING.txt' 2025-09-08T00:37:28,157 writing manifest file '/tmp/pip-pip-egg-info-329_2b37/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T00:37:28,293 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T00:37:28,298 Source in /tmp/pip-wheel-799gv2bg/scikit-bio_2f09b4de46544213a97214a76132db38 has version 0.2.1, which satisfies requirement scikit-bio==0.2.1 from https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz 2025-09-08T00:37:28,298 Removed scikit-bio==0.2.1 from https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-51rk3ju0' 2025-09-08T00:37:28,306 Created temporary directory: /tmp/pip-unpack-xmllpfl8 2025-09-08T00:37:28,307 Created temporary directory: /tmp/pip-unpack-tvte8qpr 2025-09-08T00:37:28,307 Building wheels for collected packages: scikit-bio 2025-09-08T00:37:28,308 Created temporary directory: /tmp/pip-wheel-_v68r944 2025-09-08T00:37:28,308 DEPRECATION: Building 'scikit-bio' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'scikit-bio'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T00:37:28,309 Building wheel for scikit-bio (setup.py): started 2025-09-08T00:37:28,310 Destination directory: /tmp/pip-wheel-_v68r944 2025-09-08T00:37:28,310 Running command python setup.py bdist_wheel 2025-09-08T00:37:29,214 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T00:37:29,214 warnings.warn(msg) 2025-09-08T00:37:29,611 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T00:37:29,611 !! 2025-09-08T00:37:29,611 ******************************************************************************** 2025-09-08T00:37:29,611 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T00:37:29,611 License :: OSI Approved :: BSD License 2025-09-08T00:37:29,611 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T00:37:29,611 ******************************************************************************** 2025-09-08T00:37:29,612 !! 2025-09-08T00:37:29,612 self._finalize_license_expression() 2025-09-08T00:37:29,612 running bdist_wheel 2025-09-08T00:37:29,981 running build 2025-09-08T00:37:29,981 running build_py 2025-09-08T00:37:30,059 creating build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T00:37:30,060 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T00:37:30,061 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T00:37:30,061 creating build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:37:30,062 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:37:30,062 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:37:30,063 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:37:30,063 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:37:30,064 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T00:37:30,065 creating build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:37:30,065 copying skbio/tree/_trie.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:37:30,065 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:37:30,066 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:37:30,067 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:37:30,067 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:37:30,068 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T00:37:30,069 creating build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T00:37:30,069 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T00:37:30,070 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T00:37:30,070 creating build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:37:30,071 copying skbio/stats/spatial.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:37:30,071 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:37:30,072 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:37:30,072 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:37:30,073 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:37:30,074 creating build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:37:30,074 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:37:30,075 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:37:30,075 copying skbio/sequence/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:37:30,076 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T00:37:30,076 creating build/lib.linux-armv7l-cpython-313/skbio/parse 2025-09-08T00:37:30,077 copying skbio/parse/record_finder.py -> build/lib.linux-armv7l-cpython-313/skbio/parse 2025-09-08T00:37:30,077 copying skbio/parse/record.py -> build/lib.linux-armv7l-cpython-313/skbio/parse 2025-09-08T00:37:30,078 copying skbio/parse/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/parse 2025-09-08T00:37:30,079 creating build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,079 copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,079 copying skbio/io/qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,080 copying skbio/io/phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,081 copying skbio/io/ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,081 copying skbio/io/newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,082 copying skbio/io/lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,082 copying skbio/io/fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,083 copying skbio/io/fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,083 copying skbio/io/clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,084 copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,085 copying skbio/io/_registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,085 copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,086 copying skbio/io/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,086 copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T00:37:30,087 creating build/lib.linux-armv7l-cpython-313/skbio/format 2025-09-08T00:37:30,087 copying skbio/format/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/format 2025-09-08T00:37:30,088 creating build/lib.linux-armv7l-cpython-313/skbio/draw 2025-09-08T00:37:30,088 copying skbio/draw/_distributions.py -> build/lib.linux-armv7l-cpython-313/skbio/draw 2025-09-08T00:37:30,089 copying skbio/draw/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/draw 2025-09-08T00:37:30,089 creating build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T00:37:30,090 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T00:37:30,090 creating build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:37:30,091 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:37:30,091 copying skbio/alignment/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:37:30,092 copying skbio/alignment/_alignment.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:37:30,093 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T00:37:30,094 creating build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T00:37:30,094 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T00:37:30,094 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T00:37:30,095 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T00:37:30,096 creating build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:37:30,096 copying skbio/tree/tests/test_trie.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:37:30,096 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:37:30,097 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:37:30,098 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:37:30,098 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T00:37:30,099 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:37:30,099 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:37:30,100 copying skbio/stats/tests/test_spatial.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:37:30,100 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:37:30,101 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:37:30,102 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T00:37:30,102 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:37:30,103 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:37:30,103 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:37:30,104 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:37:30,104 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:37:30,105 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:37:30,105 copying skbio/stats/ordination/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:37:30,106 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T00:37:30,107 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:37:30,107 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:37:30,108 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:37:30,108 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:37:30,109 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:37:30,109 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:37:30,110 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T00:37:30,111 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T00:37:30,111 copying skbio/stats/ordination/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T00:37:30,112 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T00:37:30,112 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:37:30,113 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:37:30,113 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:37:30,114 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:37:30,114 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:37:30,115 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:37:30,116 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T00:37:30,116 creating build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T00:37:30,117 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T00:37:30,117 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T00:37:30,118 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T00:37:30,119 creating build/lib.linux-armv7l-cpython-313/skbio/parse/tests 2025-09-08T00:37:30,119 copying skbio/parse/tests/test_record_finder.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/tests 2025-09-08T00:37:30,119 copying skbio/parse/tests/test_record.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/tests 2025-09-08T00:37:30,120 copying skbio/parse/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/tests 2025-09-08T00:37:30,121 creating build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:37:30,121 copying skbio/parse/sequences/iterator.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:37:30,122 copying skbio/parse/sequences/fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:37:30,122 copying skbio/parse/sequences/fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:37:30,123 copying skbio/parse/sequences/factory.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:37:30,123 copying skbio/parse/sequences/clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:37:30,124 copying skbio/parse/sequences/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:37:30,124 copying skbio/parse/sequences/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences 2025-09-08T00:37:30,125 creating build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:37:30,125 copying skbio/parse/sequences/tests/test_iterator.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:37:30,126 copying skbio/parse/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:37:30,127 copying skbio/parse/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:37:30,127 copying skbio/parse/sequences/tests/test_factory.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:37:30,128 copying skbio/parse/sequences/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:37:30,128 copying skbio/parse/sequences/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests 2025-09-08T00:37:30,129 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,129 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,130 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,130 copying skbio/io/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,131 copying skbio/io/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,132 copying skbio/io/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,132 copying skbio/io/tests/test_newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,133 copying skbio/io/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,133 copying skbio/io/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,134 copying skbio/io/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,135 copying skbio/io/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,135 copying skbio/io/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,136 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T00:37:30,137 creating build/lib.linux-armv7l-cpython-313/skbio/format/sequences 2025-09-08T00:37:30,137 copying skbio/format/sequences/fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences 2025-09-08T00:37:30,137 copying skbio/format/sequences/fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences 2025-09-08T00:37:30,138 copying skbio/format/sequences/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences 2025-09-08T00:37:30,139 creating build/lib.linux-armv7l-cpython-313/skbio/format/sequences/tests 2025-09-08T00:37:30,139 copying skbio/format/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences/tests 2025-09-08T00:37:30,139 copying skbio/format/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences/tests 2025-09-08T00:37:30,140 copying skbio/format/sequences/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/format/sequences/tests 2025-09-08T00:37:30,141 creating build/lib.linux-armv7l-cpython-313/skbio/draw/tests 2025-09-08T00:37:30,141 copying skbio/draw/tests/test_distributions.py -> build/lib.linux-armv7l-cpython-313/skbio/draw/tests 2025-09-08T00:37:30,141 copying skbio/draw/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/draw/tests 2025-09-08T00:37:30,142 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T00:37:30,142 copying skbio/diversity/beta/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T00:37:30,143 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T00:37:30,144 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:37:30,144 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:37:30,145 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:37:30,145 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:37:30,146 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:37:30,146 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:37:30,147 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T00:37:30,148 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T00:37:30,148 copying skbio/diversity/beta/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T00:37:30,148 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T00:37:30,149 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:37:30,149 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:37:30,150 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:37:30,150 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:37:30,151 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:37:30,152 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:37:30,152 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T00:37:30,153 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:37:30,153 copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:37:30,154 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:37:30,155 copying skbio/alignment/tests/test_alignment.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:37:30,155 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T00:37:30,156 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T00:37:30,156 copying skbio/alignment/_lib/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T00:37:30,176 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,176 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,177 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,178 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,178 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,179 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,179 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,180 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,180 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,181 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,181 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,182 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,182 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T00:37:30,183 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,183 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,184 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,184 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,185 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,185 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,186 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,186 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,187 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,187 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,188 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,188 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,189 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,189 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,190 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,190 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,191 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,191 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,192 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T00:37:30,192 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,193 copying skbio/stats/distance/tests/data/pwmantel_exp_results_too_few_permutations.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,193 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,194 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,194 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,195 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,195 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,196 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,197 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,197 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,198 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,198 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,199 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,199 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,200 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,200 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,201 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,201 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,202 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T00:37:30,202 creating build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:37:30,203 copying skbio/parse/sequences/tests/data/qs1.qseq.gz -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:37:30,203 copying skbio/parse/sequences/tests/data/noextensionfasta -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:37:30,204 copying skbio/parse/sequences/tests/data/fq1.fq -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:37:30,204 copying skbio/parse/sequences/tests/data/fq1.fastq.gz -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:37:30,205 copying skbio/parse/sequences/tests/data/fna1.qual -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:37:30,205 copying skbio/parse/sequences/tests/data/fna1.fna.gz -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:37:30,206 copying skbio/parse/sequences/tests/data/fna1.fasta -> build/lib.linux-armv7l-cpython-313/skbio/parse/sequences/tests/data 2025-09-08T00:37:30,206 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,206 copying skbio/io/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,207 copying skbio/io/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,207 copying skbio/io/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,208 copying skbio/io/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,208 copying skbio/io/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,209 copying skbio/io/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,210 copying skbio/io/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,210 copying skbio/io/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,211 copying skbio/io/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,211 copying skbio/io/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,212 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,212 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,213 copying skbio/io/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,213 copying skbio/io/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,214 copying skbio/io/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,214 copying skbio/io/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,215 copying skbio/io/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,215 copying skbio/io/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,216 copying skbio/io/tests/data/qual_sequence_collection_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,216 copying skbio/io/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,217 copying skbio/io/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,217 copying skbio/io/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,218 copying skbio/io/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,218 copying skbio/io/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,219 copying skbio/io/tests/data/qual_invalid_whitespace_only_line -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,219 copying skbio/io/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,220 copying skbio/io/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,220 copying skbio/io/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,221 copying skbio/io/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,221 copying skbio/io/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,222 copying skbio/io/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,222 copying skbio/io/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,223 copying skbio/io/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,223 copying skbio/io/tests/data/qual_invalid_blank_line -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,224 copying skbio/io/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,224 copying skbio/io/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,225 copying skbio/io/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,225 copying skbio/io/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,226 copying skbio/io/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,226 copying skbio/io/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,227 copying skbio/io/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,227 copying skbio/io/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,228 copying skbio/io/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,228 copying skbio/io/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,229 copying skbio/io/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,229 copying skbio/io/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,230 copying skbio/io/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,230 copying skbio/io/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,231 copying skbio/io/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,231 copying skbio/io/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,232 copying skbio/io/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,232 copying skbio/io/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,233 copying skbio/io/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,234 copying skbio/io/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,234 copying skbio/io/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,235 copying skbio/io/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,235 copying skbio/io/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,236 copying skbio/io/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,236 copying skbio/io/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,237 copying skbio/io/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,237 copying skbio/io/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,238 copying skbio/io/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,238 copying skbio/io/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,239 copying skbio/io/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,239 copying skbio/io/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,240 copying skbio/io/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,240 copying skbio/io/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,241 copying skbio/io/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,241 copying skbio/io/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,242 copying skbio/io/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,242 copying skbio/io/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,243 copying skbio/io/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,243 copying skbio/io/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,244 copying skbio/io/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,244 copying skbio/io/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,245 copying skbio/io/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,246 copying skbio/io/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,246 copying skbio/io/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,247 copying skbio/io/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,247 copying skbio/io/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,248 copying skbio/io/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,248 copying skbio/io/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,249 copying skbio/io/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,249 copying skbio/io/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,250 copying skbio/io/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,250 copying skbio/io/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,251 copying skbio/io/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,251 copying skbio/io/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,252 copying skbio/io/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,252 copying skbio/io/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,253 copying skbio/io/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,253 copying skbio/io/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,254 copying skbio/io/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,254 copying skbio/io/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,255 copying skbio/io/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,255 copying skbio/io/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,256 copying skbio/io/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,256 copying skbio/io/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,257 copying skbio/io/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,257 copying skbio/io/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,258 copying skbio/io/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,258 copying skbio/io/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,259 copying skbio/io/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,260 copying skbio/io/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,260 copying skbio/io/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,261 copying skbio/io/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,261 copying skbio/io/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,262 copying skbio/io/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,262 copying skbio/io/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,263 copying skbio/io/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,263 copying skbio/io/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,264 copying skbio/io/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,264 copying skbio/io/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,265 copying skbio/io/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,265 copying skbio/io/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,266 copying skbio/io/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,266 copying skbio/io/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,267 copying skbio/io/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,267 copying skbio/io/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,268 copying skbio/io/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,268 copying skbio/io/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,269 copying skbio/io/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,269 copying skbio/io/tests/data/fasta_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,270 copying skbio/io/tests/data/fasta_single_nuc_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,270 copying skbio/io/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,271 copying skbio/io/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,271 copying skbio/io/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,272 copying skbio/io/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,272 copying skbio/io/tests/data/fasta_sequence_collection_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,273 copying skbio/io/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,273 copying skbio/io/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,274 copying skbio/io/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,275 copying skbio/io/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,275 copying skbio/io/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,276 copying skbio/io/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,276 copying skbio/io/tests/data/fasta_invalid_whitespace_only_line -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,277 copying skbio/io/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,277 copying skbio/io/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,278 copying skbio/io/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,278 copying skbio/io/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,279 copying skbio/io/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,279 copying skbio/io/tests/data/fasta_invalid_blank_line -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,280 copying skbio/io/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,280 copying skbio/io/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,281 copying skbio/io/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,281 copying skbio/io/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,282 copying skbio/io/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,282 copying skbio/io/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,283 copying skbio/io/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,283 copying skbio/io/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,284 copying skbio/io/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,284 copying skbio/io/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,285 copying skbio/io/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,285 copying skbio/io/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,286 copying skbio/io/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,286 copying skbio/io/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,287 copying skbio/io/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,287 copying skbio/io/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,288 copying skbio/io/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,288 copying skbio/io/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,289 copying skbio/io/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,289 copying skbio/io/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,290 copying skbio/io/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,290 copying skbio/io/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,291 copying skbio/io/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,291 copying skbio/io/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,292 copying skbio/io/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,292 copying skbio/io/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,293 copying skbio/io/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,293 copying skbio/io/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,294 copying skbio/io/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,294 copying skbio/io/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,295 copying skbio/io/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,295 copying skbio/io/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,296 copying skbio/io/tests/data/empty -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T00:37:30,305 running build_ext 2025-09-08T00:37:30,635 building 'skbio.stats.__subsample' extension 2025-09-08T00:37:30,635 creating build/temp.linux-armv7l-cpython-313/skbio/stats 2025-09-08T00:37:30,636 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c skbio/stats/__subsample.c -o build/temp.linux-armv7l-cpython-313/skbio/stats/__subsample.o 2025-09-08T00:37:31,096 skbio/stats/__subsample.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-08T00:37:31,098 skbio/stats/__subsample.c:1872:52: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-08T00:37:31,098 1872 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); 2025-09-08T00:37:31,098 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,098 | PyBUF_C_CONTIGUOUS 2025-09-08T00:37:31,099 skbio/stats/__subsample.c:1872:52: note: each undeclared identifier is reported only once for each function it appears in 2025-09-08T00:37:31,121 skbio/stats/__subsample.c:1910:52: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-08T00:37:31,121 1910 | __pyx_t_1 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); 2025-09-08T00:37:31,121 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,122 | PyBUF_F_CONTIGUOUS 2025-09-08T00:37:31,128 skbio/stats/__subsample.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-08T00:37:31,131 skbio/stats/__subsample.c:2915:29: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T00:37:31,131 2915 | if (unlikely(__pyx_v_descr->names == Py_None)) { 2025-09-08T00:37:31,131 | ^~ 2025-09-08T00:37:31,131 skbio/stats/__subsample.c:518:43: note: in definition of macro ‘unlikely’ 2025-09-08T00:37:31,131 518 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T00:37:31,131 | ^ 2025-09-08T00:37:31,134 skbio/stats/__subsample.c:2919:28: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T00:37:31,134 2919 | __pyx_t_1 = __pyx_v_descr->names; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0; 2025-09-08T00:37:31,134 | ^~ 2025-09-08T00:37:31,137 skbio/stats/__subsample.c:2937:47: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T00:37:31,137 2937 | __pyx_t_3 = PyObject_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 795; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; 2025-09-08T00:37:31,137 | ^~ 2025-09-08T00:37:31,144 skbio/stats/__subsample.c:3115:81: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-08T00:37:31,144 3115 | (__pyx_v_offset[__pyx_t_10]) = ((__pyx_v_offset[__pyx_t_10]) + __pyx_v_child->elsize); 2025-09-08T00:37:31,145 | ^~ 2025-09-08T00:37:31,157 skbio/stats/__subsample.c: In function ‘__Pyx_InitCachedConstants’: 2025-09-08T00:37:31,161 skbio/stats/__subsample.c:3861:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T00:37:31,161 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_without_replacement, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T00:37:31,161 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,161 In file included from /usr/include/python3.13/Python.h:101, 2025-09-08T00:37:31,161 from skbio/stats/__subsample.c:16: 2025-09-08T00:37:31,161 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T00:37:31,161 213 | PyCode_New( 2025-09-08T00:37:31,161 | ^~~~~~~~~~ 2025-09-08T00:37:31,165 skbio/stats/__subsample.c:3861:262: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T00:37:31,165 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_without_replacement, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T00:37:31,165 | ^~ 2025-09-08T00:37:31,165 | | 2025-09-08T00:37:31,165 | int 2025-09-08T00:37:31,166 skbio/stats/__subsample.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:37:31,166 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:37:31,166 | ^~~~~ 2025-09-08T00:37:31,166 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T00:37:31,166 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T00:37:31,166 | ~~~~~~~~~~^ 2025-09-08T00:37:31,169 skbio/stats/__subsample.c:3861:266: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T00:37:31,169 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_without_replacement, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T00:37:31,169 | ^~~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,169 | | 2025-09-08T00:37:31,169 | PyObject * {aka struct _object *} 2025-09-08T00:37:31,170 skbio/stats/__subsample.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:37:31,170 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:37:31,170 | ^~~~ 2025-09-08T00:37:31,170 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T00:37:31,170 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T00:37:31,170 | ~~~~^ 2025-09-08T00:37:31,173 skbio/stats/__subsample.c:124:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T00:37:31,173 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:37:31,173 | ^~~~~~~~~~ 2025-09-08T00:37:31,173 skbio/stats/__subsample.c:3861:33: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:37:31,174 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_without_replacement, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T00:37:31,174 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,174 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T00:37:31,174 213 | PyCode_New( 2025-09-08T00:37:31,174 | ^~~~~~~~~~ 2025-09-08T00:37:31,198 skbio/stats/__subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-08T00:37:31,203 skbio/stats/__subsample.c:4148:22: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-08T00:37:31,204 4148 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2025-09-08T00:37:31,204 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,204 | PyDict_GET_SIZE 2025-09-08T00:37:31,248 skbio/stats/__subsample.c: In function ‘__Pyx_ErrRestore’: 2025-09-08T00:37:31,252 skbio/stats/__subsample.c:4939:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T00:37:31,252 4939 | tmp_type = tstate->curexc_type; 2025-09-08T00:37:31,252 | ^~ 2025-09-08T00:37:31,257 skbio/stats/__subsample.c:4940:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T00:37:31,257 4940 | tmp_value = tstate->curexc_value; 2025-09-08T00:37:31,257 | ^~ 2025-09-08T00:37:31,261 skbio/stats/__subsample.c:4941:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:37:31,262 4941 | tmp_tb = tstate->curexc_traceback; 2025-09-08T00:37:31,262 | ^~ 2025-09-08T00:37:31,266 skbio/stats/__subsample.c:4942:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T00:37:31,266 4942 | tstate->curexc_type = type; 2025-09-08T00:37:31,266 | ^~ 2025-09-08T00:37:31,271 skbio/stats/__subsample.c:4943:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T00:37:31,271 4943 | tstate->curexc_value = value; 2025-09-08T00:37:31,271 | ^~ 2025-09-08T00:37:31,275 skbio/stats/__subsample.c:4944:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:37:31,275 4944 | tstate->curexc_traceback = tb; 2025-09-08T00:37:31,276 | ^~ 2025-09-08T00:37:31,276 skbio/stats/__subsample.c: In function ‘__Pyx_ErrFetch’: 2025-09-08T00:37:31,280 skbio/stats/__subsample.c:4955:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T00:37:31,280 4955 | *type = tstate->curexc_type; 2025-09-08T00:37:31,280 | ^~ 2025-09-08T00:37:31,285 skbio/stats/__subsample.c:4956:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T00:37:31,285 4956 | *value = tstate->curexc_value; 2025-09-08T00:37:31,285 | ^~ 2025-09-08T00:37:31,290 skbio/stats/__subsample.c:4957:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:37:31,290 4957 | *tb = tstate->curexc_traceback; 2025-09-08T00:37:31,290 | ^~ 2025-09-08T00:37:31,294 skbio/stats/__subsample.c:4958:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T00:37:31,294 4958 | tstate->curexc_type = 0; 2025-09-08T00:37:31,294 | ^~ 2025-09-08T00:37:31,299 skbio/stats/__subsample.c:4959:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T00:37:31,299 4959 | tstate->curexc_value = 0; 2025-09-08T00:37:31,299 | ^~ 2025-09-08T00:37:31,304 skbio/stats/__subsample.c:4960:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:37:31,304 4960 | tstate->curexc_traceback = 0; 2025-09-08T00:37:31,304 | ^~ 2025-09-08T00:37:31,315 skbio/stats/__subsample.c: In function ‘__Pyx_Raise’: 2025-09-08T00:37:31,320 skbio/stats/__subsample.c:5118:34: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:37:31,320 5118 | PyObject* tmp_tb = tstate->curexc_traceback; 2025-09-08T00:37:31,320 | ^~ 2025-09-08T00:37:31,325 skbio/stats/__subsample.c:5121:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T00:37:31,325 5121 | tstate->curexc_traceback = tb; 2025-09-08T00:37:31,325 | ^~ 2025-09-08T00:37:31,333 skbio/stats/__subsample.c: In function ‘__Pyx_PyInt_As_Py_intptr_t’: 2025-09-08T00:37:31,338 skbio/stats/__subsample.c:5441:27: error: too few arguments to function ‘_PyLong_AsByteArray’ 2025-09-08T00:37:31,338 5441 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T00:37:31,338 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,338 In file included from /usr/include/python3.13/longobject.h:107, 2025-09-08T00:37:31,338 from /usr/include/python3.13/Python.h:81: 2025-09-08T00:37:31,338 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T00:37:31,338 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T00:37:31,339 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,343 skbio/stats/__subsample.c: In function ‘__Pyx_PyInt_As_int’: 2025-09-08T00:37:31,348 skbio/stats/__subsample.c:5807:27: error: too few arguments to function ‘_PyLong_AsByteArray’ 2025-09-08T00:37:31,348 5807 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T00:37:31,348 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,348 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T00:37:31,348 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T00:37:31,349 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,352 skbio/stats/__subsample.c: In function ‘__Pyx_PyInt_As_long’: 2025-09-08T00:37:31,357 skbio/stats/__subsample.c:5933:27: error: too few arguments to function ‘_PyLong_AsByteArray’ 2025-09-08T00:37:31,357 5933 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T00:37:31,357 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,357 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T00:37:31,358 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T00:37:31,358 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,372 skbio/stats/__subsample.c: In function ‘__Pyx_CreateCodeObjectForTraceback’: 2025-09-08T00:37:31,378 skbio/stats/__subsample.c:6166:5: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T00:37:31,378 6166 | py_code = __Pyx_PyCode_New( 2025-09-08T00:37:31,378 | ^~~~~~~ 2025-09-08T00:37:31,378 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T00:37:31,379 213 | PyCode_New( 2025-09-08T00:37:31,379 | ^~~~~~~~~~ 2025-09-08T00:37:31,384 skbio/stats/__subsample.c:6180:9: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T00:37:31,384 6180 | py_line, /*int firstlineno,*/ 2025-09-08T00:37:31,384 | ^~~~~~~ 2025-09-08T00:37:31,384 | | 2025-09-08T00:37:31,384 | int 2025-09-08T00:37:31,384 skbio/stats/__subsample.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:37:31,385 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:37:31,385 | ^~~~~ 2025-09-08T00:37:31,385 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T00:37:31,385 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T00:37:31,385 | ~~~~~~~~~~^ 2025-09-08T00:37:31,391 skbio/stats/__subsample.c:6181:9: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T00:37:31,391 6181 | __pyx_empty_bytes /*PyObject *lnotab*/ 2025-09-08T00:37:31,391 | ^~~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,391 | | 2025-09-08T00:37:31,391 | PyObject * {aka struct _object *} 2025-09-08T00:37:31,391 skbio/stats/__subsample.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:37:31,391 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:37:31,391 | ^~~~ 2025-09-08T00:37:31,391 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T00:37:31,391 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T00:37:31,392 | ~~~~^ 2025-09-08T00:37:31,397 skbio/stats/__subsample.c:124:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T00:37:31,397 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T00:37:31,397 | ^~~~~~~~~~ 2025-09-08T00:37:31,397 skbio/stats/__subsample.c:6166:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T00:37:31,398 6166 | py_code = __Pyx_PyCode_New( 2025-09-08T00:37:31,398 | ^~~~~~~~~~~~~~~~ 2025-09-08T00:37:31,398 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T00:37:31,398 213 | PyCode_New( 2025-09-08T00:37:31,398 | ^~~~~~~~~~ 2025-09-08T00:37:31,402 skbio/stats/__subsample.c: In function ‘__Pyx_AddTraceback’: 2025-09-08T00:37:31,407 skbio/stats/__subsample.c:6212:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T00:37:31,408 6212 | py_frame->f_lineno = py_line; 2025-09-08T00:37:31,408 | ^~ 2025-09-08T00:37:31,451 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T00:37:31,622 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T00:37:31,633 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T00:37:31,633 exec(compile('"'"''"'"''"'"' 2025-09-08T00:37:31,633 # This is -- a caller that pip uses to run setup.py 2025-09-08T00:37:31,633 # 2025-09-08T00:37:31,633 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T00:37:31,633 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T00:37:31,633 # - It provides a clear error message when setuptools is not installed. 2025-09-08T00:37:31,633 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T00:37:31,633 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T00:37:31,633 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T00:37:31,633 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T00:37:31,633 import os, sys, tokenize, traceback 2025-09-08T00:37:31,633 2025-09-08T00:37:31,633 try: 2025-09-08T00:37:31,633 import setuptools 2025-09-08T00:37:31,633 except ImportError: 2025-09-08T00:37:31,633 print( 2025-09-08T00:37:31,633 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T00:37:31,633 "the build environment with exception:", 2025-09-08T00:37:31,633 file=sys.stderr, 2025-09-08T00:37:31,633 ) 2025-09-08T00:37:31,633 traceback.print_exc() 2025-09-08T00:37:31,633 sys.exit(1) 2025-09-08T00:37:31,633 2025-09-08T00:37:31,633 __file__ = %r 2025-09-08T00:37:31,633 sys.argv[0] = __file__ 2025-09-08T00:37:31,633 2025-09-08T00:37:31,633 if os.path.exists(__file__): 2025-09-08T00:37:31,633 filename = __file__ 2025-09-08T00:37:31,633 with tokenize.open(__file__) as f: 2025-09-08T00:37:31,633 setup_py_code = f.read() 2025-09-08T00:37:31,633 else: 2025-09-08T00:37:31,633 filename = "" 2025-09-08T00:37:31,633 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T00:37:31,633 2025-09-08T00:37:31,633 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T00:37:31,633 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-799gv2bg/scikit-bio_2f09b4de46544213a97214a76132db38/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-_v68r944[/] 2025-09-08T00:37:31,633 [bold magenta]cwd[/]: /tmp/pip-wheel-799gv2bg/scikit-bio_2f09b4de46544213a97214a76132db38/ 2025-09-08T00:37:31,633 Building wheel for scikit-bio (setup.py): finished with status 'error' 2025-09-08T00:37:31,634 ERROR: Failed building wheel for scikit-bio 2025-09-08T00:37:31,635 Running setup.py clean for scikit-bio 2025-09-08T00:37:31,635 Running command python setup.py clean 2025-09-08T00:37:32,533 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T00:37:32,534 warnings.warn(msg) 2025-09-08T00:37:32,927 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T00:37:32,928 !! 2025-09-08T00:37:32,928 ******************************************************************************** 2025-09-08T00:37:32,928 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T00:37:32,928 License :: OSI Approved :: BSD License 2025-09-08T00:37:32,928 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T00:37:32,928 ******************************************************************************** 2025-09-08T00:37:32,929 !! 2025-09-08T00:37:32,929 self._finalize_license_expression() 2025-09-08T00:37:33,004 running clean 2025-09-08T00:37:33,154 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T00:37:33,154 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T00:37:33,167 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T00:37:33,168 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T00:37:33,168 removing 'build' 2025-09-08T00:37:33,304 Failed to build scikit-bio 2025-09-08T00:37:33,304 ERROR: Failed to build one or more wheels 2025-09-08T00:37:33,305 Exception information: 2025-09-08T00:37:33,305 Traceback (most recent call last): 2025-09-08T00:37:33,305 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T00:37:33,305 status = _inner_run() 2025-09-08T00:37:33,305 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T00:37:33,305 return self.run(options, args) 2025-09-08T00:37:33,305 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T00:37:33,305 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T00:37:33,305 return func(self, options, args) 2025-09-08T00:37:33,305 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T00:37:33,305 raise CommandError("Failed to build one or more wheels") 2025-09-08T00:37:33,305 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T00:37:33,309 Removed build tracker: '/tmp/pip-build-tracker-51rk3ju0'