2025-09-08T00:40:54,869 Created temporary directory: /tmp/pip-build-tracker-q8ykyzok 2025-09-08T00:40:54,870 Initialized build tracking at /tmp/pip-build-tracker-q8ykyzok 2025-09-08T00:40:54,870 Created build tracker: /tmp/pip-build-tracker-q8ykyzok 2025-09-08T00:40:54,870 Entered build tracker: /tmp/pip-build-tracker-q8ykyzok 2025-09-08T00:40:54,870 Created temporary directory: /tmp/pip-wheel-0fotrdoi 2025-09-08T00:40:54,874 Created temporary directory: /tmp/pip-ephem-wheel-cache-olbc6wyn 2025-09-08T00:40:54,931 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T00:40:54,933 2 location(s) to search for versions of rnacounter: 2025-09-08T00:40:54,933 * https://pypi.org/simple/rnacounter/ 2025-09-08T00:40:54,933 * https://www.piwheels.org/simple/rnacounter/ 2025-09-08T00:40:54,933 Fetching project page and analyzing links: https://pypi.org/simple/rnacounter/ 2025-09-08T00:40:54,934 Getting page https://pypi.org/simple/rnacounter/ 2025-09-08T00:40:54,935 Found index url https://pypi.org/simple/ 2025-09-08T00:40:55,005 Fetched page https://pypi.org/simple/rnacounter/ as application/vnd.pypi.simple.v1+json 2025-09-08T00:40:55,007 Found link https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.2 2025-09-08T00:40:55,007 Found link https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.3.1 2025-09-08T00:40:55,007 Found link https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.3.2 2025-09-08T00:40:55,008 Found link https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.3.7 2025-09-08T00:40:55,008 Found link https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.3.10 2025-09-08T00:40:55,008 Found link https://files.pythonhosted.org/packages/8a/5e/1b112fc6343bf52ace3a9afaa30eabaf4338afadabf1fb97454a7556b835/rnacounter-1.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.2 2025-09-08T00:40:55,008 Found link https://files.pythonhosted.org/packages/05/7d/42ecc29d98f52b77953a55da4836d36d534b317b4d66af971c9008804b61/rnacounter-1.2.1.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.2.1 2025-09-08T00:40:55,008 Found link https://files.pythonhosted.org/packages/dd/92/d53ee16c942fb78a312c03b22b0ddc08eb00ae4627f9125415a2c650b674/rnacounter-1.3.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.3 2025-09-08T00:40:55,009 Found link https://files.pythonhosted.org/packages/49/18/a50e0e2b164272f6d13f458b43d6851766cf121b5672de12078df2bb953a/rnacounter-1.3.1.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.3.1 2025-09-08T00:40:55,009 Found link https://files.pythonhosted.org/packages/ab/bf/54a012d6660528530b8404401bf494bda91947e38aae0d45ba4d721de6d4/rnacounter-1.4.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.4 2025-09-08T00:40:55,009 Found link https://files.pythonhosted.org/packages/84/c0/8f274da33c177f6a7c6d8632d9e99413c83e6ec688825677acace41cfdb1/rnacounter-1.4.1.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.4.1 2025-09-08T00:40:55,009 Found link https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.4.2 2025-09-08T00:40:55,009 Found link https://files.pythonhosted.org/packages/46/ee/29eed438b10276db92163dff3d25bcb91f3f9e99d9a629c35ddb97f27f4d/rnacounter-1.5.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.5 2025-09-08T00:40:55,010 Found link https://files.pythonhosted.org/packages/a2/ea/657e7b7aa7d777173695606509933b52d794b7dbb79501a87bfea2fb511f/rnacounter-1.5.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.5.2 2025-09-08T00:40:55,010 Fetching project page and analyzing links: https://www.piwheels.org/simple/rnacounter/ 2025-09-08T00:40:55,010 Getting page https://www.piwheels.org/simple/rnacounter/ 2025-09-08T00:40:55,011 Found index url https://www.piwheels.org/simple/ 2025-09-08T00:40:55,102 Fetched page https://www.piwheels.org/simple/rnacounter/ as text/html 2025-09-08T00:40:55,111 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5.2-cp35-cp35m-linux_armv7l.whl#sha256=1720939a09d8fbca466729cc4db98be3526fe7a3283ce22ef5c5a21d204a6161 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,112 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5.2-cp35-cp35m-linux_armv6l.whl#sha256=1720939a09d8fbca466729cc4db98be3526fe7a3283ce22ef5c5a21d204a6161 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,112 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5.2-cp34-cp34m-linux_armv7l.whl#sha256=e384cbf3852a44dffbf3a6887901acb36b9b30bd5c7e1a3585b2fe39d868d67a (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,112 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5.2-cp34-cp34m-linux_armv6l.whl#sha256=e384cbf3852a44dffbf3a6887901acb36b9b30bd5c7e1a3585b2fe39d868d67a (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,112 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5-cp35-cp35m-linux_armv7l.whl#sha256=02c416ec8854b92c815224212889f47dbd376e9797f66a0fb19531508b6bc793 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,112 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5-cp35-cp35m-linux_armv6l.whl#sha256=02c416ec8854b92c815224212889f47dbd376e9797f66a0fb19531508b6bc793 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,112 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5-cp34-cp34m-linux_armv7l.whl#sha256=ee88d3438f69ffa3b1868868fce8191565f303aee8dd3ff0f34c3a62886a495c (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,112 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5-cp34-cp34m-linux_armv6l.whl#sha256=ee88d3438f69ffa3b1868868fce8191565f303aee8dd3ff0f34c3a62886a495c (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,112 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.2-cp34-cp34m-linux_armv7l.whl#sha256=078f497ded7b5492884f2136fa32e9948422bd185ba0345389b2b0d9fa7ab06e (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,113 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.2-cp34-cp34m-linux_armv6l.whl#sha256=078f497ded7b5492884f2136fa32e9948422bd185ba0345389b2b0d9fa7ab06e (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,113 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.2-cp35-cp35m-linux_armv6l.whl#sha256=8dffc574db1608136d619621a8809fb0e4d5d3f830e30f94cc2567f4b0a72c55 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,113 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.2-cp35-cp35m-linux_armv7l.whl#sha256=8dffc574db1608136d619621a8809fb0e4d5d3f830e30f94cc2567f4b0a72c55 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,113 Skipping link: No binaries permitted for rnacounter: 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https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.1-cp34-cp34m-linux_armv6l.whl#sha256=627ec3e6dccdbc30b6697dd277204e300f58ecc971782b1231b09d84a4c1ef94 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,113 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4-cp34-cp34m-linux_armv7l.whl#sha256=9213623d552d14ff1971589aae10e5f886bcfb42045418cc5871a76607eb25b7 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,113 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4-cp34-cp34m-linux_armv6l.whl#sha256=9213623d552d14ff1971589aae10e5f886bcfb42045418cc5871a76607eb25b7 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,114 Skipping link: No binaries permitted for rnacounter: 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https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.3.1-cp35-cp35m-linux_armv7l.whl#sha256=a5e2657cda5fa5a9283a186329fadd8db71987a54d71f713970a85b732030278 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,114 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.3-cp35-cp35m-linux_armv6l.whl#sha256=b0a053ced5ce83115199785a117fc7820b20daffef5c19acafc83d0425aca0e1 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,114 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.3-cp35-cp35m-linux_armv7l.whl#sha256=b0a053ced5ce83115199785a117fc7820b20daffef5c19acafc83d0425aca0e1 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,114 Skipping link: No binaries permitted for rnacounter: 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https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.7-cp35-cp35m-linux_armv6l.whl#sha256=8863095125d87f061f7651061bc503fbb2c1c613417b578294b555b7bcbdeeba (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,116 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.7-cp34-cp34m-linux_armv7l.whl#sha256=368b4bcbb3bbab49c3600537626272135f936e694d4d17911afd7d83cdb31ee6 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,116 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.7-cp34-cp34m-linux_armv6l.whl#sha256=368b4bcbb3bbab49c3600537626272135f936e694d4d17911afd7d83cdb31ee6 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,116 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.2-cp34-cp34m-linux_armv7l.whl#sha256=fb039ca19afdc360ee5843812cf53fbca3ac952fe26a759e4c3700f3b460fc48 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,116 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.2-cp34-cp34m-linux_armv6l.whl#sha256=fb039ca19afdc360ee5843812cf53fbca3ac952fe26a759e4c3700f3b460fc48 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,117 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.2-cp35-cp35m-linux_armv7l.whl#sha256=51ed8c80ea67e82dc8bdaf5636d930011f8ce97bd9cc30432eedabb4dc8c9c95 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,117 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.2-cp35-cp35m-linux_armv6l.whl#sha256=51ed8c80ea67e82dc8bdaf5636d930011f8ce97bd9cc30432eedabb4dc8c9c95 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,117 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.1-cp35-cp35m-linux_armv7l.whl#sha256=534e0f91ccc8a7b74d0e8966764195b4b7e008408e132f2714d3790552ffae89 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,117 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.1-cp35-cp35m-linux_armv6l.whl#sha256=534e0f91ccc8a7b74d0e8966764195b4b7e008408e132f2714d3790552ffae89 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,117 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.1-cp34-cp34m-linux_armv7l.whl#sha256=699103109ceb69845e93941543cff532f3d26934d4a5ceb71af07f8f0c972407 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,117 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.1-cp34-cp34m-linux_armv6l.whl#sha256=699103109ceb69845e93941543cff532f3d26934d4a5ceb71af07f8f0c972407 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,117 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.2-cp34-cp34m-linux_armv7l.whl#sha256=e9936c67b8b3ee724e15ef197fef27eb2f5516ba9e9681ca399c5914b4fa01d9 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,117 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.2-cp34-cp34m-linux_armv6l.whl#sha256=e9936c67b8b3ee724e15ef197fef27eb2f5516ba9e9681ca399c5914b4fa01d9 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,117 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.2-cp35-cp35m-linux_armv6l.whl#sha256=edb76e1344212be1373b20323904b92e0429f1b336a75b9b74a852152217fbab (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,118 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.2-cp35-cp35m-linux_armv7l.whl#sha256=edb76e1344212be1373b20323904b92e0429f1b336a75b9b74a852152217fbab (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T00:40:55,118 Skipping link: not a file: https://www.piwheels.org/simple/rnacounter/ 2025-09-08T00:40:55,118 Skipping link: not a file: https://pypi.org/simple/rnacounter/ 2025-09-08T00:40:55,142 Given no hashes to check 1 links for project 'rnacounter': discarding no candidates 2025-09-08T00:40:55,143 Collecting rnacounter==1.1.3.2 2025-09-08T00:40:55,145 Created temporary directory: /tmp/pip-unpack-1h8ws5y1 2025-09-08T00:40:55,512 Downloading rnacounter-1.1.3.2.tar.gz (289 kB) 2025-09-08T00:40:55,600 Added rnacounter==1.1.3.2 from https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-q8ykyzok' 2025-09-08T00:40:55,601 Running setup.py (path:/tmp/pip-wheel-0fotrdoi/rnacounter_7c307e8fb5a2441780c6cf3beb8dfe74/setup.py) egg_info for package rnacounter 2025-09-08T00:40:55,601 Created temporary directory: /tmp/pip-pip-egg-info-fwvr6p5l 2025-09-08T00:40:55,601 Preparing metadata (setup.py): started 2025-09-08T00:40:55,602 Running command python setup.py egg_info 2025-09-08T00:40:56,281 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T00:40:56,281 warnings.warn(msg) 2025-09-08T00:40:56,741 running egg_info 2025-09-08T00:40:56,813 creating /tmp/pip-pip-egg-info-fwvr6p5l/rnacounter.egg-info 2025-09-08T00:40:56,813 writing /tmp/pip-pip-egg-info-fwvr6p5l/rnacounter.egg-info/PKG-INFO 2025-09-08T00:40:56,815 writing dependency_links to /tmp/pip-pip-egg-info-fwvr6p5l/rnacounter.egg-info/dependency_links.txt 2025-09-08T00:40:56,815 writing requirements to /tmp/pip-pip-egg-info-fwvr6p5l/rnacounter.egg-info/requires.txt 2025-09-08T00:40:56,816 writing top-level names to /tmp/pip-pip-egg-info-fwvr6p5l/rnacounter.egg-info/top_level.txt 2025-09-08T00:40:56,816 writing manifest file '/tmp/pip-pip-egg-info-fwvr6p5l/rnacounter.egg-info/SOURCES.txt' 2025-09-08T00:40:57,177 reading manifest file '/tmp/pip-pip-egg-info-fwvr6p5l/rnacounter.egg-info/SOURCES.txt' 2025-09-08T00:40:57,178 reading manifest template 'MANIFEST.in' 2025-09-08T00:40:57,183 writing manifest file '/tmp/pip-pip-egg-info-fwvr6p5l/rnacounter.egg-info/SOURCES.txt' 2025-09-08T00:40:57,296 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T00:40:57,300 Source in /tmp/pip-wheel-0fotrdoi/rnacounter_7c307e8fb5a2441780c6cf3beb8dfe74 has version 1.1.3.2, which satisfies requirement rnacounter==1.1.3.2 from https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz 2025-09-08T00:40:57,301 Removed rnacounter==1.1.3.2 from https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-q8ykyzok' 2025-09-08T00:40:57,305 Created temporary directory: /tmp/pip-unpack-m4zlu1ku 2025-09-08T00:40:57,305 Created temporary directory: /tmp/pip-unpack-f1dq21cz 2025-09-08T00:40:57,306 Building wheels for collected packages: rnacounter 2025-09-08T00:40:57,307 Created temporary directory: /tmp/pip-wheel-o66rw132 2025-09-08T00:40:57,307 DEPRECATION: Building 'rnacounter' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'rnacounter'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T00:40:57,308 Building wheel for rnacounter (setup.py): started 2025-09-08T00:40:57,309 Destination directory: /tmp/pip-wheel-o66rw132 2025-09-08T00:40:57,309 Running command python setup.py bdist_wheel 2025-09-08T00:40:57,996 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T00:40:57,996 warnings.warn(msg) 2025-09-08T00:40:58,385 running bdist_wheel 2025-09-08T00:40:58,753 running build 2025-09-08T00:40:58,753 running build_py 2025-09-08T00:40:58,830 creating build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T00:40:58,831 copying rnacounter/setup.py -> build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T00:40:58,831 copying rnacounter/main.py -> build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T00:40:58,832 copying rnacounter/__init__.py -> build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T00:40:58,832 running egg_info 2025-09-08T00:40:58,908 writing rnacounter.egg-info/PKG-INFO 2025-09-08T00:40:58,909 writing dependency_links to rnacounter.egg-info/dependency_links.txt 2025-09-08T00:40:58,910 writing requirements to rnacounter.egg-info/requires.txt 2025-09-08T00:40:58,910 writing top-level names to rnacounter.egg-info/top_level.txt 2025-09-08T00:40:58,986 reading manifest file 'rnacounter.egg-info/SOURCES.txt' 2025-09-08T00:40:58,988 reading manifest template 'MANIFEST.in' 2025-09-08T00:40:58,992 writing manifest file 'rnacounter.egg-info/SOURCES.txt' 2025-09-08T00:40:58,994 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rnacounter.testfiles' is absent from the `packages` configuration. 2025-09-08T00:40:58,994 !! 2025-09-08T00:40:58,994 ******************************************************************************** 2025-09-08T00:40:58,994 ############################ 2025-09-08T00:40:58,994 # Package would be ignored # 2025-09-08T00:40:58,994 ############################ 2025-09-08T00:40:58,994 Python recognizes 'rnacounter.testfiles' as an importable package[^1], 2025-09-08T00:40:58,995 but it is absent from setuptools' `packages` configuration. 2025-09-08T00:40:58,995 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T00:40:58,995 package, please make sure that 'rnacounter.testfiles' is explicitly added 2025-09-08T00:40:58,995 to the `packages` configuration field. 2025-09-08T00:40:58,995 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T00:40:58,995 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T00:40:58,995 instead of `find_packages(...)`/`find:`). 2025-09-08T00:40:58,995 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T00:40:58,996 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T00:40:58,996 If you don't want 'rnacounter.testfiles' to be distributed and are 2025-09-08T00:40:58,996 already explicitly excluding 'rnacounter.testfiles' via 2025-09-08T00:40:58,996 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T00:40:58,996 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T00:40:58,996 combination with a more fine grained `package-data` configuration. 2025-09-08T00:40:58,996 You can read more about "package data files" on setuptools documentation page: 2025-09-08T00:40:58,996 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T00:40:58,997 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T00:40:58,997 even if it does not contain any `.py` files. 2025-09-08T00:40:58,997 On the other hand, currently there is no concept of package data 2025-09-08T00:40:58,997 directory, all directories are treated like packages. 2025-09-08T00:40:58,997 ******************************************************************************** 2025-09-08T00:40:58,997 !! 2025-09-08T00:40:58,997 check.warn(importable) 2025-09-08T00:40:58,998 copying rnacounter/rnacounter.c -> build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T00:40:59,002 creating build/lib.linux-armv7l-cpython-313/rnacounter/testfiles 2025-09-08T00:40:59,002 copying rnacounter/testfiles/gapdhKO.bam -> build/lib.linux-armv7l-cpython-313/rnacounter/testfiles 2025-09-08T00:40:59,003 copying rnacounter/testfiles/gapdhKO.bam.bai -> build/lib.linux-armv7l-cpython-313/rnacounter/testfiles 2025-09-08T00:40:59,004 copying rnacounter/testfiles/mm9_3genes_renamed.bed -> build/lib.linux-armv7l-cpython-313/rnacounter/testfiles 2025-09-08T00:40:59,004 copying rnacounter/testfiles/mm9_3genes_renamed.gtf -> build/lib.linux-armv7l-cpython-313/rnacounter/testfiles 2025-09-08T00:40:59,005 copying rnacounter/testfiles/mm9_Gapdh_renamed.gtf -> build/lib.linux-armv7l-cpython-313/rnacounter/testfiles 2025-09-08T00:40:59,006 running build_ext 2025-09-08T00:40:59,332 building 'rnacounter/rnacounter' extension 2025-09-08T00:40:59,332 creating build/temp.linux-armv7l-cpython-313/rnacounter 2025-09-08T00:40:59,333 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -c rnacounter/rnacounter.c -o build/temp.linux-armv7l-cpython-313/rnacounter/rnacounter.o 2025-09-08T00:40:59,702 rnacounter/rnacounter.c:239:10: fatal error: numpy/arrayobject.h: No such file or directory 2025-09-08T00:40:59,702 239 | #include "numpy/arrayobject.h" 2025-09-08T00:40:59,702 | ^~~~~~~~~~~~~~~~~~~~~ 2025-09-08T00:40:59,702 compilation terminated. 2025-09-08T00:40:59,707 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T00:40:59,853 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T00:40:59,865 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T00:40:59,865 exec(compile('"'"''"'"''"'"' 2025-09-08T00:40:59,865 # This is -- a caller that pip uses to run setup.py 2025-09-08T00:40:59,865 # 2025-09-08T00:40:59,865 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T00:40:59,865 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T00:40:59,865 # - It provides a clear error message when setuptools is not installed. 2025-09-08T00:40:59,865 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T00:40:59,865 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T00:40:59,865 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T00:40:59,865 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T00:40:59,865 import os, sys, tokenize, traceback 2025-09-08T00:40:59,865 2025-09-08T00:40:59,865 try: 2025-09-08T00:40:59,865 import setuptools 2025-09-08T00:40:59,865 except ImportError: 2025-09-08T00:40:59,865 print( 2025-09-08T00:40:59,865 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T00:40:59,865 "the build environment with exception:", 2025-09-08T00:40:59,865 file=sys.stderr, 2025-09-08T00:40:59,865 ) 2025-09-08T00:40:59,865 traceback.print_exc() 2025-09-08T00:40:59,865 sys.exit(1) 2025-09-08T00:40:59,865 2025-09-08T00:40:59,865 __file__ = %r 2025-09-08T00:40:59,865 sys.argv[0] = __file__ 2025-09-08T00:40:59,865 2025-09-08T00:40:59,865 if os.path.exists(__file__): 2025-09-08T00:40:59,865 filename = __file__ 2025-09-08T00:40:59,865 with tokenize.open(__file__) as f: 2025-09-08T00:40:59,865 setup_py_code = f.read() 2025-09-08T00:40:59,865 else: 2025-09-08T00:40:59,865 filename = "" 2025-09-08T00:40:59,865 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T00:40:59,865 2025-09-08T00:40:59,865 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T00:40:59,865 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-0fotrdoi/rnacounter_7c307e8fb5a2441780c6cf3beb8dfe74/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-o66rw132[/] 2025-09-08T00:40:59,865 [bold magenta]cwd[/]: /tmp/pip-wheel-0fotrdoi/rnacounter_7c307e8fb5a2441780c6cf3beb8dfe74/ 2025-09-08T00:40:59,865 Building wheel for rnacounter (setup.py): finished with status 'error' 2025-09-08T00:40:59,866 ERROR: Failed building wheel for rnacounter 2025-09-08T00:40:59,867 Running setup.py clean for rnacounter 2025-09-08T00:40:59,867 Running command python setup.py clean 2025-09-08T00:41:00,554 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T00:41:00,554 warnings.warn(msg) 2025-09-08T00:41:01,020 running clean 2025-09-08T00:41:01,165 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T00:41:01,166 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T00:41:01,167 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T00:41:01,167 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T00:41:01,167 removing 'build' 2025-09-08T00:41:01,279 Failed to build rnacounter 2025-09-08T00:41:01,280 ERROR: Failed to build one or more wheels 2025-09-08T00:41:01,281 Exception information: 2025-09-08T00:41:01,281 Traceback (most recent call last): 2025-09-08T00:41:01,281 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T00:41:01,281 status = _inner_run() 2025-09-08T00:41:01,281 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T00:41:01,281 return self.run(options, args) 2025-09-08T00:41:01,281 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T00:41:01,281 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T00:41:01,281 return func(self, options, args) 2025-09-08T00:41:01,281 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T00:41:01,281 raise CommandError("Failed to build one or more wheels") 2025-09-08T00:41:01,281 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T00:41:01,285 Removed build tracker: '/tmp/pip-build-tracker-q8ykyzok'