2025-09-08T00:09:31,481 Created temporary directory: /tmp/pip-build-tracker-2r0vpebs
2025-09-08T00:09:31,482 Initialized build tracking at /tmp/pip-build-tracker-2r0vpebs
2025-09-08T00:09:31,482 Created build tracker: /tmp/pip-build-tracker-2r0vpebs
2025-09-08T00:09:31,482 Entered build tracker: /tmp/pip-build-tracker-2r0vpebs
2025-09-08T00:09:31,483 Created temporary directory: /tmp/pip-wheel-uw45k4q5
2025-09-08T00:09:31,486 Created temporary directory: /tmp/pip-ephem-wheel-cache-zvxg9lid
2025-09-08T00:09:31,543 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T00:09:31,545 2 location(s) to search for versions of python-libsbml:
2025-09-08T00:09:31,545 * https://pypi.org/simple/python-libsbml/
2025-09-08T00:09:31,545 * https://www.piwheels.org/simple/python-libsbml/
2025-09-08T00:09:31,546 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2025-09-08T00:09:31,546 Getting page https://pypi.org/simple/python-libsbml/
2025-09-08T00:09:31,547 Found index url https://pypi.org/simple/
2025-09-08T00:09:31,718 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2025-09-08T00:09:31,795   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2025-09-08T00:09:31,795   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2025-09-08T00:09:31,795   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2025-09-08T00:09:31,796   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2025-09-08T00:09:31,796   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2025-09-08T00:09:31,796   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,796   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2025-09-08T00:09:31,796   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,801   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2025-09-08T00:09:31,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,802   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2025-09-08T00:09:31,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,806   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2025-09-08T00:09:31,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,809   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2025-09-08T00:09:31,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,812   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2025-09-08T00:09:31,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,818   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2025-09-08T00:09:31,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,823   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2025-09-08T00:09:31,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,844   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2025-09-08T00:09:31,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,851   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2025-09-08T00:09:31,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,858   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2025-09-08T00:09:31,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,865   Found link https://files.pythonhosted.org/packages/b5/47/7a6063cb8de95b786a93ad3cef3760a72ca2f344db333c1694b7abd228b7/python-libsbml-5.20.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.2
2025-09-08T00:09:31,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/04/26903a22496521f7d74ba196d9cc5657ed9349c68deb29766081d9e50414/python_libsbml-5.20.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3d/45/98defd138e1901f301b49dd88290617a1d9d9d0e8e595ab515380429773a/python_libsbml-5.20.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/c6/2e18caa75409aa36d434f9d166f8624d9b7b8be63f959a9598bffa504e3d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/8f/2e6b389d653ab757abc10231f6e31f842fc3443c03429243d583134a88b6/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/7f/6788f019fd747df56978e3e76a871541e1986fc32fbad7f9b2d1a044125d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/91/dabd7be439071b41738e023671cefb6585bc5c5c87412462355615d51529/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/53/ac/3a753b37ce8d257b7d15d011368b99595a533d409c6d1e576d8b2e4e95f0/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/3a/f45a1ce0190e30a3445cf8084e127f09607746dc1ae6af1897a33bfacaac/python_libsbml-5.20.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/9991bb8e94f9bdec1429634355471845a6a3dd1cd87ef25b414c8e6f4525/python_libsbml-5.20.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/3f/61a99c450a4cce58ac209f73489a899d771e575a0cd4c78af239d087d51a/python_libsbml-5.20.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/76/be1c1d1d631048857c1251385f1ea4e98434ac51292df86bfefc95c75f31/python_libsbml-5.20.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/63/d668630e42dacce62517fd5e12f220813057a29e50fca69d9009fac89332/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/74/e38a3ff2e270458108a7ff73df4017320634ba58af0dce728f74910bddc0/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/65/0040257a7dac93d053643baa798919df5368c19b661699e03a11897ab5f9/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/57/0e/650eb72f69d0d77b11bb85bf5f533ab8561910fd263cab7ba1bc08a2fc5e/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c5/3ac9cf395c7ff268eebc649dd0a8d540772c5ab516e2ac9fc45cad43f8b7/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/e5/331030fb11adce42e0920dd66451dbd78794d53bc4d3b4bb42e88f59d78b/python_libsbml-5.20.2-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/45/d6188b56f4928a1ba7a1f55ee0153ab7e8b03f4538a6235c2cd95a3d1a07/python_libsbml-5.20.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/22/58/3e9ffea465efca2b604e3d9a05e599d4bf3034f9bed3a11647821e1281b0/python_libsbml-5.20.2-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ed/7c/07e507837f43eeffc97b7a3d0e2f975c53455cbdfbf75ab0a207ae286173/python_libsbml-5.20.2-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/db/96d432ed90795b06677cb2fb1173ada6af6bb8b490889994edfb7d459484/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/72/6d50597e242f809325d800e5298f914b1502f005f9250f5ed1924b91201d/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/51/c34bb7e4cf57e935b245769fe43953b10e8275a5254964bd77c6c24a2909/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/92/6705ad6d9f565efcc903f2e05c525fab20e041637d58789e64e75ce554f4/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/3e/f4e038e6eda9583dbc301655feca81fffe7e47d2472d1aa3994ced906fcf/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/05/19694615bdbce9662022a7e4cb1c9a32827e2b6333369d82fc229b570be4/python_libsbml-5.20.2-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/dc/ce7fd468c172856d691c02cabd70869fd0cf096ef27514b1926a4f985006/python_libsbml-5.20.2-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/74/218dd9f207049d9bc314f4e721edac2b542a73275db7acf599372086152a/python_libsbml-5.20.2-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/3b/08a0aea25adae6be135f663849c3877fc7766501ee7b0f2765699b9c6661/python_libsbml-5.20.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e6/1b/d623d8731b75797ac27d51a408f785b84b1fef320b0bf25cbe5e156dc53b/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/fe/f1df672a5ee732cd2d137672d2deafe97c0677670e928d4c225071f8c079/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/da/3631b93a3326fe174ee1507d113a4f3b5d3e62ebe5d717ddadb2725c726d/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/56/c6cdf2f7913be720110279b1c1c0f12fdc8ddf1b4494798d35ba78afe0b5/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/95/e3b6b579c4942a6f2e476454cc18c3f8bd703eac1741aed2e8d1a000d892/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/6f/c1e9afda82db0e6243e9e11c95a2e8276e59669b129cffc1e788b56baac4/python_libsbml-5.20.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/88/bb18a417cafaffecf7545454eaf8d66ea505b050146780d04584429d09ef/python_libsbml-5.20.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/c8/350c41479d55ba7faa7684a47470aad4d7a64187e13fffb63bdf64f1c6b1/python_libsbml-5.20.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fa/28/920e87bd0ac86ce4fa39405e04531b5aef65e81bd2692cf6d32d74ab1f6e/python_libsbml-5.20.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/52/34006a61844de53a1343e6424bcbfbfba7a69ecf604e298b09719cf3f776/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/51/06c2893ae9924ab7ab969438354397180c15517381e2407ffeee01f2ffd1/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/a8/f692640f8dd26dd80b5b1e52d35288cd66dce3aef45ce33389b4908b8a96/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/9a/a23ed03cc9843587c159ed7dfe87a0fc5981620a8c4239d0b7cb5d1ced3d/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/dd/5ba423e743e6a1248f7a260addd96ae0ed8877a9d3fc673cc9fc04d1e583/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/2e/1aa54758d80c73dcad2ac7be72f94c2e6a80231e41cc4f181e756c312ff8/python_libsbml-5.20.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/e9/3aa778c48058f73596a284c9da221edb0f4064fd0c6718c5a2b090376291/python_libsbml-5.20.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/3e/40f8ddd356ac0da9d7a68f7e76fe2d1f1b6e493ac1d7d84e85c7db0a5151/python_libsbml-5.20.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/8e/412f7feb28529a9d74f2f268d19e339215453b2ddc403fa722543327e9c4/python_libsbml-5.20.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/c1/b6224136f86d061d660706b6baff0aca9c5b93b9065b27ce5e60679b8c32/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/a9/d826781ff9cba1fc25819f0b0784190fb0aed6cedd017f6d275203fa9f20/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/d6/f81f1223273281bf4926750f7ffe3ce8e4b7b6b03456fe9fe40e1d48ce9f/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/78/bcbfa20734ed0b28b76f9237f4ff8fc786d8e97d43d402bcb06e39f3d7e9/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/f0/8a9d7920dce46184777baa3b5b368ebf09de0a6c4408def6d33797aff2fc/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/36/4df59c750ded7484a98b90b3265d884b993c1eb636c394885c5fdaa54c88/python_libsbml-5.20.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/65/9dae381f8856cd9bc8b84282ce79179a410ae56468120935b592168425f0/python_libsbml-5.20.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/c7/e8b736a73a77b9f445bf4ab3d21e944f5c3b9fe09b4e13545458bfa3032f/python_libsbml-5.20.2-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/94/991c7ca6a639d5dde00928ed1b1be8afeba72c1afd54b229f47b55bbfab9/python_libsbml-5.20.2-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/fc/79e5a26756c3e7d93085b18d2cc4dcf6aa083a3bd9a6929829ee0dc2fd53/python_libsbml-5.20.2-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/c1/1cc74cd93fdd9a80f280fed49ac11860d493cf0b00f5ae423dec0c56ed55/python_libsbml-5.20.2-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/16/ca/572dd53742081b13f59f57a4f114d6fd32ee177cf7cff45eadc38b26e70e/python_libsbml-5.20.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/16/b92b5d1607b08b29df6636cef1d3d0c4e6ab0a7af8abc858e6564c1750a4/python_libsbml-5.20.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/14/60557f93f37dbdd0a58796e0fd832b6cc3e8194caaadc7a4e78d83ef15e6/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/91/968a70814dceb1a1002c313ac80de94c6515c6ed9d580d569371581ec549/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/3f/b7bb4c06c4de558a71117a18d5e59f30f0719e43244c7e0e9010370eff11/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/33/78752be98d7cb891266d15758057efc3ac392ffa5203a2947506fa15856f/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/20/429e411767983fd38d520470acf8c34d08299d25bf05e6456210796256a3/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/0f/558289f95919730d7e341337b14d880c89912277550f03a3f78e585706b3/python_libsbml-5.20.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/5a/f435f7a12f11f1cc8cf505452814f21cde6ef6d8e2f75a4a323ab47bd0da/python_libsbml-5.20.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/5a/9b2d31a91f5e94ff44bca259fb8ea57dab7e2cadd66d54888dedbd7efdb7/python_libsbml-5.20.4-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/e4/79a57f56cc0fcb9ccf74a480a2102a5b91109958fbd830f92c2e6435e905/python_libsbml-5.20.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/a7/18dbc2129f0187cb00404de81ff51fd7a907a11dedfed28c10d3b03eac32/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/91/53c5c6a005eb529fc844ef5cc6f079cd85070d2a2e96227cd3644eceec88/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/4b/f11aab01f1483ca770ef7af61a41005a1fc5a3b1004c097b0a92e7046e61/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/7f/57e791cf4495ba2e8e07386ee070373eb925cbb7ffb80f4dc2db42e1f7ac/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/13/a97e56c822875a7ea616277e1801e2bea3f536ecbb292297cf947bb11bee/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/24/53784997e5bae3def9e6279fdc71c70c59e4efeea8a31adce5816778d2e1/python_libsbml-5.20.4-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/15/bd/6838154413a83a8f6dc5b60bafd80ba73f1554c47c99f39cfe958c64d907/python_libsbml-5.20.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/6c/43a8b4e49ac8885d9a9ae856c8a442864d987a40e82b32358ea718a75441/python_libsbml-5.20.4-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4d/3bad65cbb54ba14d5d983874d47d2352efe6f45cd737573d64d6091980ba/python_libsbml-5.20.4-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/db/3f9f75d42106144df9cec628a4c9f24a024256372f7155f24f4608932c14/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/0a/a0ac99ea56235166b5441bd9c605fbbfa5130f8611a725da6368d628d4a4/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/d3/9db568a391f82ec47da42ae557f3e429acfee6364b205a06ae2ccb602af1/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/b2/3dae1e7f2d5742f1b9aae565aea55d2a978059c324a891a9bfd921b75024/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/48/79f5737c66329717f1c98f7ffad4af5bcf053477ef76f4e65c71b20c573e/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/28/b5049445492235606844c1d8e88317bd0545417ce1c268a4c34f98946d3a/python_libsbml-5.20.4-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/ee/4bbb01a4c7ce916fc2f26d836aa5aa0e3a90f9e526f8d6effefdf06079bc/python_libsbml-5.20.4-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/25/ec5b2921781757dbfc030f6b4502580662e156223f1358676858a27cf9b9/python_libsbml-5.20.4-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/28/cbd7a16304666555af50adafceb85796c633fecee649e72f2fef8b34d296/python_libsbml-5.20.4-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7c/1db267adce246d8b18d46d80a4cd4efb8ee0f56eb25d42e4a4a27474166c/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/78/5dd03cddfaa1a2ed43b32b984135b8fe0469835eaaf3a432224fc2347862/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5c/c4/800ff7ccb91390d67eca1bf4e5fd479f201e849bd4ac6aee39782f395127/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/ac/d6607f3ce489b82b4a51f86172b48ae6c4d8f278fa46fd4117fffe6097c0/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/17/0a4504d7851a8b6ad704148e72e00d4fcd8172a7e4b02b09f521632ceb35/python_libsbml-5.20.4-cp313-cp313-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/80/bf/e94a0cee6f9c9413d070b4285ba055a44e8b912426fed66fb0bb26ab0818/python_libsbml-5.20.4-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/a7/7f319330d9eabacbf32b0ed9bde3f8387088548f62756b4d14048c830ffe/python_libsbml-5.20.4-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/ac/a5fba140496a4c18259ceaa81c3292a139d626a791f9c621cd733f64f727/python_libsbml-5.20.4-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/ee/ee8fb79daf7133def31a34eb5efe53205924b5b9c640d4febbff1fe6ca64/python_libsbml-5.20.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/c7/1a6998b0cee736c2380345bdc27ae2bd8840c806cb36833028667a3b2605/python_libsbml-5.20.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/68/24d9b592da6a5416c533c659d208fed08ddcc10b442b1d1d2ee270a915aa/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/1d/75a7565e1af082e72b7a63fa4f186600a297ece167db2360627ebb71193a/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/6b/b1ee160b127ca459beb2fcf51285208fc223bcc40b1bc6ac43879352d632/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/62/f0c26ed535543f6bfb205e87e4418c3c37c12d7825fd30f247f0132f08a3/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/e6/d8f7554548e6fa79691301726fc9d6c3e0eedadbfb65992e1d917ab4b4f2/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/0d/686219eb0c02627571575cc73eb46dcfd1c9a43bd97fae491da105aa84a3/python_libsbml-5.20.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/5f/92323c94c8a96c498eca5673aa39228f48984a5f5443d887a86ceb9a2e62/python_libsbml-5.20.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/94/47/c55da9ac26a7992f720000338f92b8eeb87c50fced41eb7cf56a6e9b4c67/python_libsbml-5.20.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f7/e7af5fa8941eeef5883eab1c6dc241f58950715c72f793e4d89f04cb51b0/python_libsbml-5.20.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/d1/32b0f68766364b51adcf147717b4f56f374df7ae78a08436e8719f6df888/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/be/10f32360a55cb8b1395b2ba26476455cec3a870b518eb0d910e277f20fc8/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c9/5e56a08bf385080b9a9a1b8e41eb04c4a4bd649a7f6eb46dc5f72c8db420/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/64/f8404da7ba27cb4905df4713048e8194a9c711c7dae312d33b2b3a821bd6/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e8/10/ff8ab1d3a721b60827124c14f5252b7d332f3351c1e517ca4d429f1ba4c2/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/dd/659e49b36e545bdecdc3394aae0a51d55655fb7e6a5e122eb417e2ea17ea/python_libsbml-5.20.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/f4/93b12b7433288cd57c91d66401cc029fed14163b47753fdeecb7b9ec72e8/python_libsbml-5.20.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/39/85ff81ad6a098f069e6680accd97659d02efc62c32a81416717e65c00f09/python_libsbml-5.20.4-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,881   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/be/910bbd6c0c8669be8df6764bee0e6c39729c0ab6212834ecf68d24ea5be8/python_libsbml-5.20.4-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,881   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/db/7cb8f4a9d6e4d6a96072df1f409414d5628f0aa58dc91a45c601e3d711f1/python_libsbml-5.20.4-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,881   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/38/2d9c53cd3e4f3d2bb3e0dbea03ec7ec9de4507ba6e5ce73b1982e858298f/python_libsbml-5.20.4-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,881   Found link https://files.pythonhosted.org/packages/5d/74/1bf1b9883de7bc928e1727e4502c690ec09a8f7b9f2d53edb8fa452d23c3/python_libsbml-5.20.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.4
2025-09-08T00:09:31,881   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/56/40b610acdbde447a90b91503c81d5cc591dec29815cd427a26280fad5c84/python_libsbml-5.20.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,881   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/72/96520783019f16ec6b0189b66ea8fea7f43d11c269feaf68c42fd6c79500/python_libsbml-5.20.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,881   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e1/9f/66466d20861c14bdc18fc393bb065da7da9e0a3972b5533557f956ac1d0c/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,882   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/36/a1e96927d948b9d5bc1b3e57ea6154677c06e234ad190a2f726c331465c8/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,882   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/51/da98b3adc80c3d89a9b997b16d4a6448207d26e15c99bf464c4decbe852a/python_libsbml-5.20.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,882   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/ef/d44ea1ff0042439c29cc864c353e1ca9a062a753d5e8288ca6e6e4ba853c/python_libsbml-5.20.5-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,882   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/66/d5fc713d4a369d17522e3816be5234289cd27fc731c112ce698387382d89/python_libsbml-5.20.5-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,882   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/3f/199d494311da757de5a94404e88a0c6bbae99e64865c98dcf415b03d595a/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,882   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/17/7f1f0ad2f3b0054d1e762b6cbdd25153fd904135ce07561b0fd79dd83d90/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,883   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/a5/ef3cdd88c805181ed3da79a9ec85ee707872bacb7bc1cbc736efa9c3cd78/python_libsbml-5.20.5-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,883   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/d6/269bd9d7dfb69025e98c7afe2285a9c6d66b980209bbdbd54ffd995c592f/python_libsbml-5.20.5-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,883   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/c0/3ba180b1d18c5d1427e3772fa1402f72ce6edaac345e4aab14af61f50916/python_libsbml-5.20.5-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,883   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/7f/59669e43e75428a6e740bb11bf40f0a5f4afc7a6604f7071560dd1f7fab3/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,883   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/02/696c5a0dc72a3949224207534219afe54951381f2ad4ee1df5e03833edbe/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,883   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/68/528c874841022d90fc93854197d327aab7c65b36c8a8d954a5280e9520b4/python_libsbml-5.20.5-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,883   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/8f/e98feeb2d0a6ef95716123cb808b25723dabbcde5d0f555e89360be1d8d6/python_libsbml-5.20.5-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,883   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/45/2e64419d50428b67a7592850121afee11f83448781506bbc389f737c2597/python_libsbml-5.20.5-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,884   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/8f/3e211bbdaf69ca0c789530353cdf02711f95e70ac8581a08ce0c45903c80/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,884   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/92/a8a86812776326ffdfac6c5addc7581f6399f7b825b31dd90e211f63739f/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,884   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/49/70f6288db3ce3ef006627318d518235836c47b34e4aa7716760e33b639b9/python_libsbml-5.20.5-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,884   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/ed/28754b6c5043e55437f0175dd5f4132ff8ace0af32040c129f564ba88fe8/python_libsbml-5.20.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,884   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f2/678c5dd13f67c229c5a4edd57fefaa653311bb2bfeaf47ed02e9671af61f/python_libsbml-5.20.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,884   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/92/41/c0d5007db0988a242562f8ef8cf303302c70497effda82c6459dce4b600c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,884   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2c/5d/bb31237034edc0654363ce7e0d667cb0303da88def3083ad538b03cdee7c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,885   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/d2/c0d8c2166310a5c6fb201c05f9817fc66f17bbb3d70bde3faae15016eec1/python_libsbml-5.20.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T00:09:31,885   Found link https://files.pythonhosted.org/packages/5d/4b/b49fe7384cc9e727e88c58713edc3b4a1c469673937d8d31cafe23261120/python_libsbml-5.20.5.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.5
2025-09-08T00:09:31,885 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2025-09-08T00:09:31,886 Getting page https://www.piwheels.org/simple/python-libsbml/
2025-09-08T00:09:31,886 Found index url https://www.piwheels.org/simple/
2025-09-08T00:09:31,995 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2025-09-08T00:09:32,022   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,022   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv7l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,022   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv6l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,023   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv7l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,023   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp311-cp311-linux_armv6l.whl#sha256=4faec8be0d9c1f8accb40055cbf08bb3f266b740242ce421e848f1de997d87db (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,023   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp311-cp311-linux_armv7l.whl#sha256=4faec8be0d9c1f8accb40055cbf08bb3f266b740242ce421e848f1de997d87db (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,023   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv6l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,024   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv7l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,024   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv6l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,024   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv7l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,024   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,024   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv7l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,024   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv6l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,025   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv7l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,025   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv6l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,025   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv7l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,025   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv6l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,025   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv7l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,025   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv6l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,025   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv7l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,025   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv7l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,025   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv6l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,026   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv7l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,026   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv6l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,026   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv6l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,026   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv7l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,026   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv6l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,026   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv7l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,026   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv6l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,026   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv7l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,027   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv7l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,027   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv6l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,027   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp311-cp311-linux_armv6l.whl#sha256=99f3bc173559c37c1f788969eb598026cafc9e944158e2023b737c9101dfcafa (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,027   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp311-cp311-linux_armv7l.whl#sha256=99f3bc173559c37c1f788969eb598026cafc9e944158e2023b737c9101dfcafa (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,027   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp39-cp39-linux_armv6l.whl#sha256=03f09a2a301fb92a748c27cfaca2c913aa216f5b77f0d6615cc6261c06a5b8f1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,027   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp39-cp39-linux_armv7l.whl#sha256=03f09a2a301fb92a748c27cfaca2c913aa216f5b77f0d6615cc6261c06a5b8f1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,027   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,027   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,027   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv6l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,028   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv7l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,028   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp311-cp311-linux_armv6l.whl#sha256=fd840f49adf057ea4cb0cf91aa5289ecaf17045a69d326cded46d006149ea6f6 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,028   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp311-cp311-linux_armv7l.whl#sha256=fd840f49adf057ea4cb0cf91aa5289ecaf17045a69d326cded46d006149ea6f6 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,028   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,028   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,028   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv6l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,028   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,028   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,029   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,029   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,029   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,029   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,029   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,029   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv6l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,029   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv7l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,029   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv6l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,029   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,030   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,030   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,030   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,030   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,030   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv6l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,030   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv7l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,030   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,030   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,031   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,031   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,031   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,031   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,031   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv6l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,031   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,031   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,031   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,031   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,032   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,032   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,032   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,032   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv6l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,032   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv7l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,032   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,032   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,032   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,033   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,033   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,033   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,033   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv6l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,033   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv7l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,033   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,033   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T00:09:32,033 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2025-09-08T00:09:32,034 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2025-09-08T00:09:32,057 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2025-09-08T00:09:32,058 Collecting python-libsbml==5.10.2
2025-09-08T00:09:32,059   Created temporary directory: /tmp/pip-unpack-vai0mo4a
2025-09-08T00:09:32,599   Downloading python-libsbml-5.10.2.tar.gz (3.3 MB)
2025-09-08T00:09:33,954   Added python-libsbml==5.10.2 from https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz to build tracker '/tmp/pip-build-tracker-2r0vpebs'
2025-09-08T00:09:33,955   Running setup.py (path:/tmp/pip-wheel-uw45k4q5/python-libsbml_d0b68985c9dd4afa9cdac9c624e2603c/setup.py) egg_info for package python-libsbml
2025-09-08T00:09:33,956   Created temporary directory: /tmp/pip-pip-egg-info-lu08essz
2025-09-08T00:09:33,956   Preparing metadata (setup.py): started
2025-09-08T00:09:33,957   Running command python setup.py egg_info
2025-09-08T00:09:34,461   /tmp/pip-wheel-uw45k4q5/python-libsbml_d0b68985c9dd4afa9cdac9c624e2603c/setup.py:65: SyntaxWarning: invalid escape sequence '\D'
2025-09-08T00:09:34,461     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-08T00:09:35,518   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T00:09:35,522   Source in /tmp/pip-wheel-uw45k4q5/python-libsbml_d0b68985c9dd4afa9cdac9c624e2603c has version 5.10.2, which satisfies requirement python-libsbml==5.10.2 from https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz
2025-09-08T00:09:35,523   Removed python-libsbml==5.10.2 from https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz from build tracker '/tmp/pip-build-tracker-2r0vpebs'
2025-09-08T00:09:35,525 Created temporary directory: /tmp/pip-unpack-pvodr3ru
2025-09-08T00:09:35,526 Created temporary directory: /tmp/pip-unpack-7ilm_dvq
2025-09-08T00:09:35,526 Building wheels for collected packages: python-libsbml
2025-09-08T00:09:35,527   Created temporary directory: /tmp/pip-wheel-nztc3932
2025-09-08T00:09:35,527   DEPRECATION: Building 'python-libsbml' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'python-libsbml'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T00:09:35,529   Building wheel for python-libsbml (setup.py): started
2025-09-08T00:09:35,529   Destination directory: /tmp/pip-wheel-nztc3932
2025-09-08T00:09:35,529   Running command python setup.py bdist_wheel
2025-09-08T00:09:36,037   /tmp/pip-wheel-uw45k4q5/python-libsbml_d0b68985c9dd4afa9cdac9c624e2603c/setup.py:65: SyntaxWarning: invalid escape sequence '\D'
2025-09-08T00:09:36,037     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-08T00:09:40,273   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_MangledTypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2025-09-08T00:09:40,273   ./base/libsbml_wrap.cpp:569:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,273     569 |       register size_t l = 0;
2025-09-08T00:09:40,273         |                       ^
2025-09-08T00:09:40,274   ./base/libsbml_wrap.cpp:570:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,274     570 |       register size_t r = iter->size - 1;
2025-09-08T00:09:40,274         |                       ^
2025-09-08T00:09:40,274   ./base/libsbml_wrap.cpp:573:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,274     573 |         register size_t i = (l + r) >> 1;
2025-09-08T00:09:40,275         |                         ^
2025-09-08T00:09:40,275   ./base/libsbml_wrap.cpp:576:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,275     576 |           register int compare = strcmp(name, iname);
2025-09-08T00:09:40,275         |                        ^~~~~~~
2025-09-08T00:09:40,277   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_TypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2025-09-08T00:09:40,277   ./base/libsbml_wrap.cpp:620:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,277     620 |       register size_t i = 0;
2025-09-08T00:09:40,277         |                       ^
2025-09-08T00:09:40,278   ./base/libsbml_wrap.cpp: In function ‘char* SWIG_PackData(char*, void*, size_t)’:
2025-09-08T00:09:40,278   ./base/libsbml_wrap.cpp:639:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,278     639 |   register const unsigned char *u = (unsigned char *) ptr;
2025-09-08T00:09:40,278         |                                 ^
2025-09-08T00:09:40,279   ./base/libsbml_wrap.cpp:640:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,279     640 |   register const unsigned char *eu =  u + sz;
2025-09-08T00:09:40,279         |                                 ^~
2025-09-08T00:09:40,279   ./base/libsbml_wrap.cpp:642:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,280     642 |     register unsigned char uu = *u;
2025-09-08T00:09:40,280         |                            ^~
2025-09-08T00:09:40,281   ./base/libsbml_wrap.cpp: In function ‘const char* SWIG_UnpackData(const char*, void*, size_t)’:
2025-09-08T00:09:40,281   ./base/libsbml_wrap.cpp:654:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,281     654 |   register unsigned char *u = (unsigned char *) ptr;
2025-09-08T00:09:40,281         |                           ^
2025-09-08T00:09:40,281   ./base/libsbml_wrap.cpp:655:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,281     655 |   register const unsigned char *eu = u + sz;
2025-09-08T00:09:40,282         |                                 ^~
2025-09-08T00:09:40,282   ./base/libsbml_wrap.cpp:657:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,282     657 |     register char d = *(c++);
2025-09-08T00:09:40,282         |                   ^
2025-09-08T00:09:40,283   ./base/libsbml_wrap.cpp:658:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,283     658 |     register unsigned char uu;
2025-09-08T00:09:40,283         |                            ^~
2025-09-08T00:09:40,293   ./base/libsbml_wrap.cpp: In function ‘int SWIG_Python_UnpackTuple(PyObject*, const char*, Py_ssize_t, Py_ssize_t, PyObject**)’:
2025-09-08T00:09:40,293   ./base/libsbml_wrap.cpp:1322:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,293    1322 |       register int i;
2025-09-08T00:09:40,293         |                    ^
2025-09-08T00:09:40,294   ./base/libsbml_wrap.cpp:1332:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,294    1332 |     register Py_ssize_t l = PyTuple_GET_SIZE(args);
2025-09-08T00:09:40,295         |                         ^
2025-09-08T00:09:40,296   ./base/libsbml_wrap.cpp:1342:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T00:09:40,296    1342 |       register int i;
2025-09-08T00:09:40,296         |                    ^
2025-09-08T00:09:41,249   ./base/libsbml_wrap.cpp: At global scope:
2025-09-08T00:09:41,249   ./base/libsbml_wrap.cpp:3202:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:41,249    3202 |     UnknownExceptionHandler(std::unexpected_handler nh = handler)
2025-09-08T00:09:41,249         |                                                                 ^
2025-09-08T00:09:41,255   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2025-09-08T00:09:41,255   ./base/libsbml_wrap.cpp:3204:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:41,255    3204 |       old = std::set_unexpected(nh);
2025-09-08T00:09:41,255         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:09:41,255   In file included from /usr/include/c++/14/ios:41,
2025-09-08T00:09:41,256                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:09:41,256                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:09:41,256                    from ./base/libsbml_wrap.cpp:2956:
2025-09-08T00:09:41,256   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-08T00:09:41,256      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-08T00:09:41,256         |                      ^~~~~~~~~~~~~~
2025-09-08T00:09:41,256   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2025-09-08T00:09:41,257   ./base/libsbml_wrap.cpp:3209:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:41,257    3209 |       std::set_unexpected(old);
2025-09-08T00:09:41,257         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:09:41,257   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-08T00:09:41,257      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-08T00:09:41,257         |                      ^~~~~~~~~~~~~~
2025-09-08T00:09:42,078   In file included from ./base/libsbml.h:45,
2025-09-08T00:09:42,078                    from ./base/libsbml_wrap.cpp:3797:
2025-09-08T00:09:42,079   ./base//sbml/ListOf.h: At global scope:
2025-09-08T00:09:42,079   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:42,079      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:09:42,079         |                           ^~~~~~~~~~~~~~
2025-09-08T00:09:42,079   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:09:42,079                    from ./base/libsbml_wrap.cpp:2955:
2025-09-08T00:09:42,079   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:42,079     117 |     struct unary_function
2025-09-08T00:09:42,079         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:42,810   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:09:42,810                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T00:09:42,810                    from ./base/../swig/fbc-package.h:31,
2025-09-08T00:09:42,810                    from ./base/../swig/libsbml-packages.h:4,
2025-09-08T00:09:42,810                    from ./base/libsbml_wrap.cpp:3801:
2025-09-08T00:09:42,810   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:42,810     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:09:42,811         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:09:42,811   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:42,811     117 |     struct unary_function
2025-09-08T00:09:42,811         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:42,817   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:42,817     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:09:42,817         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:09:42,817   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:42,817     117 |     struct unary_function
2025-09-08T00:09:42,817         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:42,832   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T00:09:42,833   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:42,833     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:09:42,833         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:09:42,833   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:09:42,833     117 |     struct unary_function
2025-09-08T00:09:42,833         |            ^~~~~~~~~~~~~~
2025-09-08T00:09:42,856   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:09:42,856                    from ./base/../swig/layout-package.h:49,
2025-09-08T00:09:42,856                    from ./base/../swig/libsbml-packages.h:5:
2025-09-08T00:09:42,856   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:09:42,856     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:09:42,856         |                             ^~~~~~~~
2025-09-08T00:09:42,857   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:09:42,857     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:09:42,857         |                              ^~~~~~~~
2025-09-08T00:09:42,861   In file included from ./base//sbml/packages/layout/sbml/CubicBezier.h:55,
2025-09-08T00:09:42,862                    from ./base/../swig/layout-package.h:50:
2025-09-08T00:09:42,862   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:09:42,862     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:09:42,862         |                        ^~~~~~~~
2025-09-08T00:09:42,862   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:09:42,862     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:09:42,862         |                        ^~~~~~~~
2025-09-08T00:09:42,867   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:09:42,868     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:09:42,868         |                             ^~~~~~~~
2025-09-08T00:09:42,868   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:09:42,868                    from ./base/../swig/layout-package.h:54:
2025-09-08T00:09:42,868   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:09:42,868     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:09:42,868         |                          ^~~~~~~~
2025-09-08T00:09:42,871   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:09:42,871     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:09:42,871         |                             ^~~~~~~~
2025-09-08T00:09:42,871   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:09:42,871                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:09:42,871   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:09:42,872     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:09:42,872         |                                   ^~~~~~~~
2025-09-08T00:09:42,876   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:09:42,876     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:09:42,876         |                             ^~~~~~~~
2025-09-08T00:09:42,876   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:09:42,877     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:09:42,877         |                           ^~~~~~~~
2025-09-08T00:09:42,879   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:09:42,879     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:09:42,879         |                             ^~~~~~~~
2025-09-08T00:09:42,880   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:09:42,880   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:09:42,880     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:09:42,880         |                      ^~~~~~~~
2025-09-08T00:09:42,895   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:09:42,896     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:09:42,896         |                             ^~~~~~~~
2025-09-08T00:09:42,896   In file included from ./base/../swig/layout-package.h:57:
2025-09-08T00:09:42,896   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:09:42,896     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:09:42,896         |                            ^~~~~~~~
2025-09-08T00:09:42,901   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:09:42,901     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:09:42,901         |                             ^~~~~~~~
2025-09-08T00:09:42,901   In file included from ./base/../swig/layout-package.h:58:
2025-09-08T00:09:42,901   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:09:42,901     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:09:42,901         |                          ^~~~~~~~
2025-09-08T00:09:43,028   ./base/libsbml_wrap.cpp:4705:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:43,028    4705 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2025-09-08T00:09:43,028         |                                    ^~~~~~~~~~~~~~~
2025-09-08T00:09:43,028   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T00:09:43,029     131 |     struct binary_function
2025-09-08T00:09:43,029         |            ^~~~~~~~~~~~~~~
2025-09-08T00:09:43,032   ./base/libsbml_wrap.cpp:4730:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:43,032    4730 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2025-09-08T00:09:43,032         |                                                ^~~~~~~~~~~~~~~
2025-09-08T00:09:43,033   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T00:09:43,033     131 |     struct binary_function
2025-09-08T00:09:43,033         |            ^~~~~~~~~~~~~~~
2025-09-08T00:09:43,037   ./base/libsbml_wrap.cpp:4740:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:09:43,037    4740 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2025-09-08T00:09:43,037         |                                                ^~~~~~~~~~~~~~~
2025-09-08T00:09:43,037   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T00:09:43,037     131 |     struct binary_function
2025-09-08T00:09:43,037         |            ^~~~~~~~~~~~~~~
2025-09-08T00:15:30,970   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:15:30,970                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:15:30,970                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:15:30,970                    from ./base/sbml/AlgebraicRule.cpp:49:
2025-09-08T00:15:30,970   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:30,970      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:30,970         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:30,971   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:30,971                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:15:30,971                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:15:30,971                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:15:30,972                    from ./base/sbml/AlgebraicRule.cpp:34:
2025-09-08T00:15:30,972   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:30,972     117 |     struct unary_function
2025-09-08T00:15:30,972         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:31,200   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)’:
2025-09-08T00:15:31,200   ./base/sbml/AlgebraicRule.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:31,200     163 |   catch (SBMLConstructorException)
2025-09-08T00:15:31,201         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:31,201   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:15:31,201   ./base/sbml/AlgebraicRule.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:31,201     179 |   catch (SBMLConstructorException)
2025-09-08T00:15:31,201         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:34,895   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:15:34,895                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:15:34,895                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:15:34,895                    from ./base/sbml/AssignmentRule.cpp:49:
2025-09-08T00:15:34,895   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:34,895      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:34,896         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:34,896   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:34,896                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:15:34,897                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:15:34,897                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:15:34,897                    from ./base/sbml/AssignmentRule.cpp:34:
2025-09-08T00:15:34,897   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:34,897     117 |     struct unary_function
2025-09-08T00:15:34,897         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:35,128   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)’:
2025-09-08T00:15:35,128   ./base/sbml/AssignmentRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:35,128     154 |   catch (SBMLConstructorException)
2025-09-08T00:15:35,128         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:35,129   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:15:35,129   ./base/sbml/AssignmentRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:35,129     170 |   catch (SBMLConstructorException)
2025-09-08T00:15:35,129         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:38,914   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:15:38,914                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:15:38,914                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:15:38,914                    from ./base/sbml/Compartment.cpp:41:
2025-09-08T00:15:38,915   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:38,915      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:38,915         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:38,915   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:38,915                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:15:38,915                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:15:38,915                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:15:38,915                    from ./base/sbml/Compartment.cpp:35:
2025-09-08T00:15:38,915   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:38,916     117 |     struct unary_function
2025-09-08T00:15:38,916         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:39,148   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-08T00:15:39,148   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:15:39,148     146 |   if (&orig == NULL)
2025-09-08T00:15:39,148         |             ^
2025-09-08T00:15:39,148   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2025-09-08T00:15:39,148     143 | Compartment::Compartment(const Compartment& orig) :
2025-09-08T00:15:39,148         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:39,150   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-08T00:15:39,150   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:15:39,150     175 |   if (&rhs == NULL)
2025-09-08T00:15:39,150         |            ^
2025-09-08T00:15:39,151   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2025-09-08T00:15:39,151     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2025-09-08T00:15:39,151         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:39,157   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-08T00:15:39,157   ./base/sbml/Compartment.cpp:496:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:15:39,157     496 |   if (&(sid) == NULL)
2025-09-08T00:15:39,157         |              ^
2025-09-08T00:15:39,157   ./base/sbml/Compartment.cpp:485:40: note: ‘sid’ declared here
2025-09-08T00:15:39,157     485 | Compartment::setId (const std::string& sid)
2025-09-08T00:15:39,157         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:39,157   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-08T00:15:39,158   ./base/sbml/Compartment.cpp:521:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:15:39,158     521 |   if (&(name) == NULL)
2025-09-08T00:15:39,158         |               ^
2025-09-08T00:15:39,158   ./base/sbml/Compartment.cpp:516:42: note: ‘name’ declared here
2025-09-08T00:15:39,158     516 | Compartment::setName (const std::string& name)
2025-09-08T00:15:39,158         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:39,158   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-08T00:15:39,159   ./base/sbml/Compartment.cpp:551:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:15:39,159     551 |   if (&(sid) == NULL)
2025-09-08T00:15:39,159         |              ^
2025-09-08T00:15:39,159   ./base/sbml/Compartment.cpp:549:53: note: ‘sid’ declared here
2025-09-08T00:15:39,159     549 | Compartment::setCompartmentType (const std::string& sid)
2025-09-08T00:15:39,159         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:39,161   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-08T00:15:39,161   ./base/sbml/Compartment.cpp:673:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:15:39,161     673 |   if (&(sid) == NULL)
2025-09-08T00:15:39,161         |              ^
2025-09-08T00:15:39,161   ./base/sbml/Compartment.cpp:671:43: note: ‘sid’ declared here
2025-09-08T00:15:39,162     671 | Compartment::setUnits (const std::string& sid)
2025-09-08T00:15:39,162         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:39,162   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-08T00:15:39,162   ./base/sbml/Compartment.cpp:695:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:15:39,162     695 |   if (&(sid) == NULL)
2025-09-08T00:15:39,162         |              ^
2025-09-08T00:15:39,162   ./base/sbml/Compartment.cpp:693:45: note: ‘sid’ declared here
2025-09-08T00:15:39,162     693 | Compartment::setOutside (const std::string& sid)
2025-09-08T00:15:39,163         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:39,204   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-08T00:15:39,204   ./base/sbml/Compartment.cpp:1534:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:15:39,204    1534 |   if (&(sid) == NULL)
2025-09-08T00:15:39,204         |              ^
2025-09-08T00:15:39,204   ./base/sbml/Compartment.cpp:1530:45: note: ‘sid’ declared here
2025-09-08T00:15:39,204    1530 | ListOfCompartments::get (const std::string& sid) const
2025-09-08T00:15:39,204         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:39,207   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-08T00:15:39,208   ./base/sbml/Compartment.cpp:1562:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:15:39,208    1562 |   if (&(sid) != NULL)
2025-09-08T00:15:39,208         |              ^
2025-09-08T00:15:39,208   ./base/sbml/Compartment.cpp:1557:48: note: ‘sid’ declared here
2025-09-08T00:15:39,208    1557 | ListOfCompartments::remove (const std::string& sid)
2025-09-08T00:15:39,208         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:39,213   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2025-09-08T00:15:39,213   ./base/sbml/Compartment.cpp:1640:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:39,213    1640 |   catch (SBMLConstructorException)
2025-09-08T00:15:39,213         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:39,214   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:15:39,214   ./base/sbml/Compartment.cpp:1656:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:39,214    1656 |   catch (SBMLConstructorException)
2025-09-08T00:15:39,214         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:39,741   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-08T00:15:39,742   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:39,742     146 |   if (&orig == NULL)
2025-09-08T00:15:39,742         |   ^~
2025-09-08T00:15:39,742   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-08T00:15:39,742   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:39,742     175 |   if (&rhs == NULL)
2025-09-08T00:15:39,742         |   ^~
2025-09-08T00:15:39,745   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-08T00:15:39,745   ./base/sbml/Compartment.cpp:496:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:39,745     496 |   if (&(sid) == NULL)
2025-09-08T00:15:39,745         |   ^~
2025-09-08T00:15:39,745   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-08T00:15:39,745   ./base/sbml/Compartment.cpp:521:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:39,745     521 |   if (&(name) == NULL)
2025-09-08T00:15:39,746         |   ^~
2025-09-08T00:15:39,746   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-08T00:15:39,746   ./base/sbml/Compartment.cpp:551:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:39,746     551 |   if (&(sid) == NULL)
2025-09-08T00:15:39,746         |   ^~
2025-09-08T00:15:39,746   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-08T00:15:39,746   ./base/sbml/Compartment.cpp:673:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:39,746     673 |   if (&(sid) == NULL)
2025-09-08T00:15:39,746         |   ^~
2025-09-08T00:15:39,747   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-08T00:15:39,747   ./base/sbml/Compartment.cpp:695:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:39,747     695 |   if (&(sid) == NULL)
2025-09-08T00:15:39,747         |   ^~
2025-09-08T00:15:39,751   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-08T00:15:39,751   ./base/sbml/Compartment.cpp:1534:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:39,752    1534 |   if (&(sid) == NULL)
2025-09-08T00:15:39,752         |   ^~
2025-09-08T00:15:39,760   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-08T00:15:39,760   ./base/sbml/Compartment.cpp:1562:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:39,760    1562 |   if (&(sid) != NULL)
2025-09-08T00:15:39,760         |   ^~
2025-09-08T00:15:47,556   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:15:47,556                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:15:47,557                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:15:47,557                    from ./base/sbml/CompartmentType.cpp:40:
2025-09-08T00:15:47,557   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:47,557      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:47,557         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:47,557   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:47,557                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:15:47,557                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:15:47,557                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:15:47,558                    from ./base/sbml/CompartmentType.cpp:33:
2025-09-08T00:15:47,558   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:47,558     117 |     struct unary_function
2025-09-08T00:15:47,558         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:47,788   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-08T00:15:47,788   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:15:47,788      92 |   if (&orig == NULL)
2025-09-08T00:15:47,788         |             ^
2025-09-08T00:15:47,788   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2025-09-08T00:15:47,788      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2025-09-08T00:15:47,788         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:47,789   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-08T00:15:47,789   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:15:47,789     110 |   if (&rhs == NULL)
2025-09-08T00:15:47,790         |            ^
2025-09-08T00:15:47,790   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2025-09-08T00:15:47,790     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2025-09-08T00:15:47,790         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:47,792   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-08T00:15:47,792   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:15:47,793     207 |   if (&(sid) == NULL)
2025-09-08T00:15:47,793         |              ^
2025-09-08T00:15:47,793   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2025-09-08T00:15:47,793     196 | CompartmentType::setId (const std::string& sid)
2025-09-08T00:15:47,793         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:47,793   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-08T00:15:47,793   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:15:47,793     232 |   if (&(name) == NULL)
2025-09-08T00:15:47,794         |               ^
2025-09-08T00:15:47,794   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2025-09-08T00:15:47,794     227 | CompartmentType::setName (const std::string& name)
2025-09-08T00:15:47,794         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:47,804   ./base/sbml/CompartmentType.cpp: At global scope:
2025-09-08T00:15:47,804   ./base/sbml/CompartmentType.cpp:543:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:47,804     543 | struct IdEqCT : public unary_function<SBase*, bool>
2025-09-08T00:15:47,804         |                        ^~~~~~~~~~~~~~
2025-09-08T00:15:47,805   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:47,805     117 |     struct unary_function
2025-09-08T00:15:47,805         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:47,808   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-08T00:15:47,808   ./base/sbml/CompartmentType.cpp:568:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:15:47,808     568 |   if (&(sid) == NULL)
2025-09-08T00:15:47,808         |              ^
2025-09-08T00:15:47,808   ./base/sbml/CompartmentType.cpp:564:49: note: ‘sid’ declared here
2025-09-08T00:15:47,808     564 | ListOfCompartmentTypes::get (const std::string& sid) const
2025-09-08T00:15:47,809         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:47,811   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-08T00:15:47,811   ./base/sbml/CompartmentType.cpp:596:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:15:47,812     596 |   if (&(sid) != NULL)
2025-09-08T00:15:47,812         |              ^
2025-09-08T00:15:47,812   ./base/sbml/CompartmentType.cpp:591:52: note: ‘sid’ declared here
2025-09-08T00:15:47,812     591 | ListOfCompartmentTypes::remove (const std::string& sid)
2025-09-08T00:15:47,812         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:47,816   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2025-09-08T00:15:47,817   ./base/sbml/CompartmentType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:47,817     674 |   catch (SBMLConstructorException)
2025-09-08T00:15:47,817         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:47,817   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:15:47,817   ./base/sbml/CompartmentType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:47,818     690 |   catch (SBMLConstructorException)
2025-09-08T00:15:47,818         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:48,308   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-08T00:15:48,308   ./base/sbml/CompartmentType.cpp:568:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:48,308     568 |   if (&(sid) == NULL)
2025-09-08T00:15:48,308         |   ^~
2025-09-08T00:15:48,311   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-08T00:15:48,311   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:48,311      92 |   if (&orig == NULL)
2025-09-08T00:15:48,311         |   ^~
2025-09-08T00:15:48,311   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-08T00:15:48,311   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:48,311     110 |   if (&rhs == NULL)
2025-09-08T00:15:48,311         |   ^~
2025-09-08T00:15:48,313   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-08T00:15:48,313   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:48,313     207 |   if (&(sid) == NULL)
2025-09-08T00:15:48,314         |   ^~
2025-09-08T00:15:48,314   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-08T00:15:48,314   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:48,314     232 |   if (&(name) == NULL)
2025-09-08T00:15:48,314         |   ^~
2025-09-08T00:15:48,321   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-08T00:15:48,321   ./base/sbml/CompartmentType.cpp:596:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:48,321     596 |   if (&(sid) != NULL)
2025-09-08T00:15:48,321         |   ^~
2025-09-08T00:15:53,181   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:15:53,181                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:15:53,181                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:15:53,181                    from ./base/sbml/Constraint.cpp:43:
2025-09-08T00:15:53,182   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:53,182      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:53,182         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:53,182   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:53,182                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:15:53,182                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:15:53,182                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:15:53,182                    from ./base/sbml/Constraint.cpp:33:
2025-09-08T00:15:53,182   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:53,183     117 |     struct unary_function
2025-09-08T00:15:53,183         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:53,410   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-08T00:15:53,410   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:15:53,410     101 |   if (&orig == NULL)
2025-09-08T00:15:53,410         |             ^
2025-09-08T00:15:53,410   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2025-09-08T00:15:53,410      96 | Constraint::Constraint (const Constraint& orig) :
2025-09-08T00:15:53,410         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:15:53,411   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-08T00:15:53,412   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:15:53,412     122 |   if (&rhs == NULL)
2025-09-08T00:15:53,412         |            ^
2025-09-08T00:15:53,412   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2025-09-08T00:15:53,412     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2025-09-08T00:15:53,412         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:15:53,436   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2025-09-08T00:15:53,437   ./base/sbml/Constraint.cpp:772:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:53,437     772 |   catch (SBMLConstructorException)
2025-09-08T00:15:53,437         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:53,437   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:15:53,437   ./base/sbml/Constraint.cpp:788:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:53,437     788 |   catch (SBMLConstructorException)
2025-09-08T00:15:53,438         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:53,904   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-08T00:15:53,904   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:53,904     101 |   if (&orig == NULL)
2025-09-08T00:15:53,904         |   ^~
2025-09-08T00:15:53,905   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-08T00:15:53,905   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:53,905     122 |   if (&rhs == NULL)
2025-09-08T00:15:53,905         |   ^~
2025-09-08T00:15:58,217   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:15:58,217                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:15:58,217                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:15:58,217                    from ./base/sbml/Delay.cpp:45:
2025-09-08T00:15:58,218   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:15:58,218      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:15:58,218         |                           ^~~~~~~~~~~~~~
2025-09-08T00:15:58,218   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:15:58,218                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:15:58,218                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:15:58,218                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:15:58,218                    from ./base/sbml/Delay.cpp:33:
2025-09-08T00:15:58,218   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:15:58,219     117 |     struct unary_function
2025-09-08T00:15:58,219         |            ^~~~~~~~~~~~~~
2025-09-08T00:15:58,445   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-08T00:15:58,446   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:15:58,446     100 |   if (&orig == NULL)
2025-09-08T00:15:58,446         |             ^
2025-09-08T00:15:58,446   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2025-09-08T00:15:58,446      96 | Delay::Delay (const Delay& orig) :
2025-09-08T00:15:58,446         |               ~~~~~~~~~~~~~^~~~
2025-09-08T00:15:58,447   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-08T00:15:58,447   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:15:58,448     122 |   if (&rhs == NULL)
2025-09-08T00:15:58,448         |            ^
2025-09-08T00:15:58,448   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2025-09-08T00:15:58,448     120 | Delay& Delay::operator=(const Delay& rhs)
2025-09-08T00:15:58,448         |                         ~~~~~~~~~~~~~^~~
2025-09-08T00:15:58,464   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2025-09-08T00:15:58,464   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:58,464     648 |   catch (SBMLConstructorException)
2025-09-08T00:15:58,464         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:58,465   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:15:58,465   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:15:58,465     664 |   catch (SBMLConstructorException)
2025-09-08T00:15:58,465         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:15:58,896   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-08T00:15:58,896   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:58,896     100 |   if (&orig == NULL)
2025-09-08T00:15:58,896         |   ^~
2025-09-08T00:15:58,896   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-08T00:15:58,896   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:15:58,896     122 |   if (&rhs == NULL)
2025-09-08T00:15:58,896         |   ^~
2025-09-08T00:16:02,687   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:16:02,688                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:16:02,688                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:16:02,688                    from ./base/sbml/Event.cpp:44:
2025-09-08T00:16:02,688   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:02,688      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:02,688         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:02,688   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:02,688                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:16:02,689                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:16:02,689                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:16:02,689                    from ./base/sbml/Event.cpp:33:
2025-09-08T00:16:02,689   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:02,689     117 |     struct unary_function
2025-09-08T00:16:02,689         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:02,920   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-08T00:16:02,921   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:16:02,921     134 |   if (&orig == NULL)
2025-09-08T00:16:02,921         |             ^
2025-09-08T00:16:02,921   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2025-09-08T00:16:02,921     127 | Event::Event (const Event& orig) :
2025-09-08T00:16:02,921         |               ~~~~~~~~~~~~~^~~~
2025-09-08T00:16:02,923   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-08T00:16:02,924   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:16:02,924     171 |   if (&rhs == NULL)
2025-09-08T00:16:02,924         |            ^
2025-09-08T00:16:02,924   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2025-09-08T00:16:02,924     169 | Event& Event::operator=(const Event& rhs)
2025-09-08T00:16:02,924         |                         ~~~~~~~~~~~~~^~~
2025-09-08T00:16:02,939   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-08T00:16:02,940   ./base/sbml/Event.cpp:530:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:02,940     530 |   if (&(sid) == NULL)
2025-09-08T00:16:02,940         |              ^
2025-09-08T00:16:02,940   ./base/sbml/Event.cpp:519:34: note: ‘sid’ declared here
2025-09-08T00:16:02,940     519 | Event::setId (const std::string& sid)
2025-09-08T00:16:02,940         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:02,940   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-08T00:16:02,940   ./base/sbml/Event.cpp:556:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:16:02,940     556 |   if (&(name) == NULL)
2025-09-08T00:16:02,941         |               ^
2025-09-08T00:16:02,941   ./base/sbml/Event.cpp:551:36: note: ‘name’ declared here
2025-09-08T00:16:02,941     551 | Event::setName (const std::string& name)
2025-09-08T00:16:02,941         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:02,946   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-08T00:16:02,947   ./base/sbml/Event.cpp:704:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:02,947     704 |   if (&(sid) == NULL)
2025-09-08T00:16:02,947         |              ^
2025-09-08T00:16:02,947   ./base/sbml/Event.cpp:702:41: note: ‘sid’ declared here
2025-09-08T00:16:02,947     702 | Event::setTimeUnits (const std::string& sid)
2025-09-08T00:16:02,947         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:02,954   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-08T00:16:02,954   ./base/sbml/Event.cpp:1079:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T00:16:02,954    1079 |   return (&variable != NULL ) ?
2025-09-08T00:16:02,955         |                     ^
2025-09-08T00:16:02,955   ./base/sbml/Event.cpp:1077:47: note: ‘variable’ declared here
2025-09-08T00:16:02,955    1077 | Event::getEventAssignment (const std::string& variable) const
2025-09-08T00:16:02,955         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:16:02,955   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-08T00:16:02,955   ./base/sbml/Event.cpp:1091:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T00:16:02,955    1091 |   return (&variable != NULL ) ?
2025-09-08T00:16:02,955         |                     ^
2025-09-08T00:16:02,955   ./base/sbml/Event.cpp:1089:47: note: ‘variable’ declared here
2025-09-08T00:16:02,956    1089 | Event::getEventAssignment (const std::string& variable)
2025-09-08T00:16:02,956         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:16:02,956   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-08T00:16:02,956   ./base/sbml/Event.cpp:1124:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T00:16:02,956    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-08T00:16:02,956         |                     ^
2025-09-08T00:16:02,956   ./base/sbml/Event.cpp:1122:50: note: ‘variable’ declared here
2025-09-08T00:16:02,956    1122 | Event::removeEventAssignment (const std::string& variable)
2025-09-08T00:16:02,956         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:16:02,985   ./base/sbml/Event.cpp: At global scope:
2025-09-08T00:16:02,985   ./base/sbml/Event.cpp:1741:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:02,985    1741 | struct IdEqE : public unary_function<SBase*, bool>
2025-09-08T00:16:02,985         |                       ^~~~~~~~~~~~~~
2025-09-08T00:16:02,985   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:02,985     117 |     struct unary_function
2025-09-08T00:16:02,986         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:02,987   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-08T00:16:02,987   ./base/sbml/Event.cpp:1755:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:02,987    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-08T00:16:02,987         |                ^
2025-09-08T00:16:02,987   ./base/sbml/Event.cpp:1753:39: note: ‘sid’ declared here
2025-09-08T00:16:02,987    1753 | ListOfEvents::get (const std::string& sid)
2025-09-08T00:16:02,987         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:02,987   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-08T00:16:02,988   ./base/sbml/Event.cpp:1764:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:02,988    1764 |   if (&sid == NULL) return NULL;
2025-09-08T00:16:02,988         |            ^
2025-09-08T00:16:02,988   ./base/sbml/Event.cpp:1762:39: note: ‘sid’ declared here
2025-09-08T00:16:02,988    1762 | ListOfEvents::get (const std::string& sid) const
2025-09-08T00:16:02,988         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:02,992   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-08T00:16:02,992   ./base/sbml/Event.cpp:1787:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:02,992    1787 |   if (&(sid) != NULL)
2025-09-08T00:16:02,992         |              ^
2025-09-08T00:16:02,993   ./base/sbml/Event.cpp:1782:42: note: ‘sid’ declared here
2025-09-08T00:16:02,993    1782 | ListOfEvents::remove (const std::string& sid)
2025-09-08T00:16:02,993         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:02,997   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2025-09-08T00:16:02,997   ./base/sbml/Event.cpp:1866:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:02,998    1866 |   catch (SBMLConstructorException)
2025-09-08T00:16:02,998         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:02,998   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:16:02,998   ./base/sbml/Event.cpp:1882:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:02,998    1882 |   catch (SBMLConstructorException)
2025-09-08T00:16:02,998         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:03,514   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-08T00:16:03,515   ./base/sbml/Event.cpp:1755:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,515    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-08T00:16:03,515         |                         ^
2025-09-08T00:16:03,523   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-08T00:16:03,523   ./base/sbml/Event.cpp:1079:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,523    1079 |   return (&variable != NULL ) ?
2025-09-08T00:16:03,523         |                               ^
2025-09-08T00:16:03,523   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-08T00:16:03,523   ./base/sbml/Event.cpp:1091:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,523    1091 |   return (&variable != NULL ) ?
2025-09-08T00:16:03,524         |                               ^
2025-09-08T00:16:03,524   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-08T00:16:03,524   ./base/sbml/Event.cpp:1124:30: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,524    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-08T00:16:03,524         |                              ^
2025-09-08T00:16:03,534   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-08T00:16:03,534   ./base/sbml/Event.cpp:1764:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,534    1764 |   if (&sid == NULL) return NULL;
2025-09-08T00:16:03,534         |   ^~
2025-09-08T00:16:03,537   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-08T00:16:03,537   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,537     171 |   if (&rhs == NULL)
2025-09-08T00:16:03,538         |   ^~
2025-09-08T00:16:03,543   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-08T00:16:03,543   ./base/sbml/Event.cpp:530:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,543     530 |   if (&(sid) == NULL)
2025-09-08T00:16:03,543         |   ^~
2025-09-08T00:16:03,543   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-08T00:16:03,543   ./base/sbml/Event.cpp:556:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,543     556 |   if (&(name) == NULL)
2025-09-08T00:16:03,543         |   ^~
2025-09-08T00:16:03,544   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-08T00:16:03,544   ./base/sbml/Event.cpp:704:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,544     704 |   if (&(sid) == NULL)
2025-09-08T00:16:03,544         |   ^~
2025-09-08T00:16:03,551   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-08T00:16:03,552   ./base/sbml/Event.cpp:1787:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,552    1787 |   if (&(sid) != NULL)
2025-09-08T00:16:03,552         |   ^~
2025-09-08T00:16:03,554   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-08T00:16:03,554   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:03,554     134 |   if (&orig == NULL)
2025-09-08T00:16:03,555         |   ^~
2025-09-08T00:16:10,607   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:16:10,607                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:16:10,608                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:16:10,608                    from ./base/sbml/EventAssignment.cpp:44:
2025-09-08T00:16:10,608   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:10,608      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:10,608         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:10,608   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:10,608                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:16:10,608                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:16:10,609                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:16:10,609                    from ./base/sbml/EventAssignment.cpp:33:
2025-09-08T00:16:10,609   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:10,609     117 |     struct unary_function
2025-09-08T00:16:10,609         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:10,866   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-08T00:16:10,866   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:16:10,866     100 |   if (&orig == NULL)
2025-09-08T00:16:10,866         |             ^
2025-09-08T00:16:10,866   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2025-09-08T00:16:10,866      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2025-09-08T00:16:10,867         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:10,867   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-08T00:16:10,868   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:16:10,868     122 |   if (&rhs == NULL)
2025-09-08T00:16:10,868         |            ^
2025-09-08T00:16:10,868   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2025-09-08T00:16:10,868     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2025-09-08T00:16:10,868         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:10,870   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-08T00:16:10,871   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:10,871     219 |   if (&(sid) == NULL)
2025-09-08T00:16:10,871         |              ^
2025-09-08T00:16:10,871   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2025-09-08T00:16:10,871     217 | EventAssignment::setVariable (const std::string& sid)
2025-09-08T00:16:10,871         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:10,896   ./base/sbml/EventAssignment.cpp: At global scope:
2025-09-08T00:16:10,896   ./base/sbml/EventAssignment.cpp:846:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:10,896     846 | struct IdEqEA : public unary_function<SBase*, bool>
2025-09-08T00:16:10,896         |                        ^~~~~~~~~~~~~~
2025-09-08T00:16:10,897   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:10,897     117 |     struct unary_function
2025-09-08T00:16:10,897         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:10,899   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-08T00:16:10,899   ./base/sbml/EventAssignment.cpp:871:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:10,900     871 |   if (&(sid) == NULL)
2025-09-08T00:16:10,900         |              ^
2025-09-08T00:16:10,900   ./base/sbml/EventAssignment.cpp:867:49: note: ‘sid’ declared here
2025-09-08T00:16:10,900     867 | ListOfEventAssignments::get (const std::string& sid) const
2025-09-08T00:16:10,900         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:10,903   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-08T00:16:10,903   ./base/sbml/EventAssignment.cpp:899:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:10,903     899 |   if (&(sid) != NULL)
2025-09-08T00:16:10,903         |              ^
2025-09-08T00:16:10,903   ./base/sbml/EventAssignment.cpp:894:52: note: ‘sid’ declared here
2025-09-08T00:16:10,903     894 | ListOfEventAssignments::remove (const std::string& sid)
2025-09-08T00:16:10,904         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:10,909   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2025-09-08T00:16:10,909   ./base/sbml/EventAssignment.cpp:992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:10,909     992 |   catch (SBMLConstructorException)
2025-09-08T00:16:10,909         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:10,910   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:16:10,910   ./base/sbml/EventAssignment.cpp:1008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:10,910    1008 |   catch (SBMLConstructorException)
2025-09-08T00:16:10,910         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:11,411   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-08T00:16:11,411   ./base/sbml/EventAssignment.cpp:871:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:11,411     871 |   if (&(sid) == NULL)
2025-09-08T00:16:11,411         |   ^~
2025-09-08T00:16:11,414   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-08T00:16:11,414   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:11,414     100 |   if (&orig == NULL)
2025-09-08T00:16:11,415         |   ^~
2025-09-08T00:16:11,415   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-08T00:16:11,415   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:11,415     122 |   if (&rhs == NULL)
2025-09-08T00:16:11,415         |   ^~
2025-09-08T00:16:11,417   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-08T00:16:11,417   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:11,417     219 |   if (&(sid) == NULL)
2025-09-08T00:16:11,417         |   ^~
2025-09-08T00:16:11,427   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-08T00:16:11,427   ./base/sbml/EventAssignment.cpp:899:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:11,427     899 |   if (&(sid) != NULL)
2025-09-08T00:16:11,428         |   ^~
2025-09-08T00:16:19,115   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:16:19,115                    from ./base/sbml/FunctionDefinition.cpp:47:
2025-09-08T00:16:19,115   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:19,115      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:19,115         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:19,116   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:19,116                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:16:19,116                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:16:19,116                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:16:19,116                    from ./base/sbml/FunctionDefinition.cpp:35:
2025-09-08T00:16:19,116   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:19,116     117 |     struct unary_function
2025-09-08T00:16:19,116         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:19,396   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-08T00:16:19,396   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:16:19,396     102 |   if (&orig == NULL)
2025-09-08T00:16:19,396         |             ^
2025-09-08T00:16:19,396   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2025-09-08T00:16:19,396      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2025-09-08T00:16:19,396         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:19,397   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-08T00:16:19,398   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:16:19,398     125 |   if (&rhs == NULL)
2025-09-08T00:16:19,398         |            ^
2025-09-08T00:16:19,398   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2025-09-08T00:16:19,398     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2025-09-08T00:16:19,398         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:19,401   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-08T00:16:19,401   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:19,401     253 |   if (&(sid) == NULL)
2025-09-08T00:16:19,402         |              ^
2025-09-08T00:16:19,402   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2025-09-08T00:16:19,402     242 | FunctionDefinition::setId (const std::string& sid)
2025-09-08T00:16:19,402         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:19,402   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-08T00:16:19,402   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:16:19,402     278 |   if (&(name) == NULL)
2025-09-08T00:16:19,402         |               ^
2025-09-08T00:16:19,403   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2025-09-08T00:16:19,403     273 | FunctionDefinition::setName (const std::string& name)
2025-09-08T00:16:19,403         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:19,428   ./base/sbml/FunctionDefinition.cpp: At global scope:
2025-09-08T00:16:19,428   ./base/sbml/FunctionDefinition.cpp:994:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:19,428     994 | struct IdEqFD : public unary_function<SBase*, bool>
2025-09-08T00:16:19,428         |                        ^~~~~~~~~~~~~~
2025-09-08T00:16:19,428   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:19,428     117 |     struct unary_function
2025-09-08T00:16:19,428         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:19,431   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-08T00:16:19,431   ./base/sbml/FunctionDefinition.cpp:1019:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:19,431    1019 |   if (&(sid) == NULL)
2025-09-08T00:16:19,431         |              ^
2025-09-08T00:16:19,432   ./base/sbml/FunctionDefinition.cpp:1015:52: note: ‘sid’ declared here
2025-09-08T00:16:19,432    1015 | ListOfFunctionDefinitions::get (const std::string& sid) const
2025-09-08T00:16:19,432         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:19,435   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-08T00:16:19,435   ./base/sbml/FunctionDefinition.cpp:1047:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:19,435    1047 |   if (&(sid) != NULL)
2025-09-08T00:16:19,435         |              ^
2025-09-08T00:16:19,435   ./base/sbml/FunctionDefinition.cpp:1042:55: note: ‘sid’ declared here
2025-09-08T00:16:19,435    1042 | ListOfFunctionDefinitions::remove (const std::string& sid)
2025-09-08T00:16:19,435         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:19,440   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2025-09-08T00:16:19,440   ./base/sbml/FunctionDefinition.cpp:1124:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:19,440    1124 |   catch (SBMLConstructorException)
2025-09-08T00:16:19,440         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:19,441   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:16:19,441   ./base/sbml/FunctionDefinition.cpp:1140:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:19,441    1140 |   catch (SBMLConstructorException)
2025-09-08T00:16:19,441         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:19,945   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-08T00:16:19,945   ./base/sbml/FunctionDefinition.cpp:1019:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:19,945    1019 |   if (&(sid) == NULL)
2025-09-08T00:16:19,945         |   ^~
2025-09-08T00:16:19,948   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-08T00:16:19,948   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:19,949     102 |   if (&orig == NULL)
2025-09-08T00:16:19,949         |   ^~
2025-09-08T00:16:19,949   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-08T00:16:19,949   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:19,949     125 |   if (&rhs == NULL)
2025-09-08T00:16:19,949         |   ^~
2025-09-08T00:16:19,951   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-08T00:16:19,951   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:19,952     253 |   if (&(sid) == NULL)
2025-09-08T00:16:19,952         |   ^~
2025-09-08T00:16:19,952   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-08T00:16:19,952   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:19,952     278 |   if (&(name) == NULL)
2025-09-08T00:16:19,952         |   ^~
2025-09-08T00:16:19,960   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-08T00:16:19,960   ./base/sbml/FunctionDefinition.cpp:1047:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:19,960    1047 |   if (&(sid) != NULL)
2025-09-08T00:16:19,960         |   ^~
2025-09-08T00:16:25,421   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:16:25,421                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:16:25,422                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:16:25,422                    from ./base/sbml/InitialAssignment.cpp:43:
2025-09-08T00:16:25,422   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:25,422      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:25,422         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:25,422   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:25,422                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:16:25,422                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:16:25,423                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:16:25,423                    from ./base/sbml/InitialAssignment.cpp:33:
2025-09-08T00:16:25,423   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:25,423     117 |     struct unary_function
2025-09-08T00:16:25,423         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:25,650   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-08T00:16:25,651   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:16:25,651      97 |   if (&orig == NULL)
2025-09-08T00:16:25,651         |             ^
2025-09-08T00:16:25,651   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2025-09-08T00:16:25,651      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2025-09-08T00:16:25,651         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:25,652   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-08T00:16:25,652   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:16:25,652     119 |   if (&rhs == NULL)
2025-09-08T00:16:25,653         |            ^
2025-09-08T00:16:25,653   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2025-09-08T00:16:25,653     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2025-09-08T00:16:25,653         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:25,655   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-08T00:16:25,655   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:25,656     232 |   if (&(sid) == NULL)
2025-09-08T00:16:25,656         |              ^
2025-09-08T00:16:25,656   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2025-09-08T00:16:25,656     230 | InitialAssignment::setSymbol (const std::string& sid)
2025-09-08T00:16:25,656         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:25,680   ./base/sbml/InitialAssignment.cpp: At global scope:
2025-09-08T00:16:25,681   ./base/sbml/InitialAssignment.cpp:843:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:25,681     843 | struct IdEqIA : public unary_function<SBase*, bool>
2025-09-08T00:16:25,681         |                        ^~~~~~~~~~~~~~
2025-09-08T00:16:25,681   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:25,681     117 |     struct unary_function
2025-09-08T00:16:25,681         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:25,684   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-08T00:16:25,684   ./base/sbml/InitialAssignment.cpp:868:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:25,684     868 |   if (&(sid) == NULL)
2025-09-08T00:16:25,684         |              ^
2025-09-08T00:16:25,684   ./base/sbml/InitialAssignment.cpp:864:51: note: ‘sid’ declared here
2025-09-08T00:16:25,684     864 | ListOfInitialAssignments::get (const std::string& sid) const
2025-09-08T00:16:25,685         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:25,687   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-08T00:16:25,687   ./base/sbml/InitialAssignment.cpp:896:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:25,688     896 |   if (&(sid) != NULL)
2025-09-08T00:16:25,688         |              ^
2025-09-08T00:16:25,688   ./base/sbml/InitialAssignment.cpp:891:54: note: ‘sid’ declared here
2025-09-08T00:16:25,688     891 | ListOfInitialAssignments::remove (const std::string& sid)
2025-09-08T00:16:25,688         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:25,693   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2025-09-08T00:16:25,694   ./base/sbml/InitialAssignment.cpp:989:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:25,694     989 |   catch (SBMLConstructorException)
2025-09-08T00:16:25,694         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:25,694   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:16:25,694   ./base/sbml/InitialAssignment.cpp:1005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:25,694    1005 |   catch (SBMLConstructorException)
2025-09-08T00:16:25,695         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:26,195   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-08T00:16:26,195   ./base/sbml/InitialAssignment.cpp:868:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:26,195     868 |   if (&(sid) == NULL)
2025-09-08T00:16:26,195         |   ^~
2025-09-08T00:16:26,198   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-08T00:16:26,198   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:26,198      97 |   if (&orig == NULL)
2025-09-08T00:16:26,198         |   ^~
2025-09-08T00:16:26,198   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-08T00:16:26,198   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:26,198     119 |   if (&rhs == NULL)
2025-09-08T00:16:26,199         |   ^~
2025-09-08T00:16:26,201   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-08T00:16:26,201   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:26,201     232 |   if (&(sid) == NULL)
2025-09-08T00:16:26,202         |   ^~
2025-09-08T00:16:26,210   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-08T00:16:26,211   ./base/sbml/InitialAssignment.cpp:896:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:26,211     896 |   if (&(sid) != NULL)
2025-09-08T00:16:26,211         |   ^~
2025-09-08T00:16:31,681   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:16:31,682                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:16:31,682                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:16:31,682                    from ./base/sbml/KineticLaw.cpp:45:
2025-09-08T00:16:31,682   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:31,682      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:31,682         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:31,683   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:31,683                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:16:31,683                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:16:31,683                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:16:31,683                    from ./base/sbml/KineticLaw.cpp:33:
2025-09-08T00:16:31,683   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:31,683     117 |     struct unary_function
2025-09-08T00:16:31,684         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:31,916   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-08T00:16:31,916   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:16:31,917     117 |   if (&orig == NULL)
2025-09-08T00:16:31,917         |             ^
2025-09-08T00:16:31,917   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2025-09-08T00:16:31,917     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2025-09-08T00:16:31,917         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:31,920   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-08T00:16:31,920   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:16:31,920     143 |   if (&rhs == NULL)
2025-09-08T00:16:31,920         |            ^
2025-09-08T00:16:31,920   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2025-09-08T00:16:31,920     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2025-09-08T00:16:31,920         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:31,932   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-08T00:16:31,932   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-08T00:16:31,932     363 |   if (&(formula) == NULL)
2025-09-08T00:16:31,932         |                  ^
2025-09-08T00:16:31,932   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2025-09-08T00:16:31,932     361 | KineticLaw::setFormula (const std::string& formula)
2025-09-08T00:16:31,932         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:16:31,935   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-08T00:16:31,935   ./base/sbml/KineticLaw.cpp:435:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:31,935     435 |   if (&(sid) == NULL)
2025-09-08T00:16:31,935         |              ^
2025-09-08T00:16:31,936   ./base/sbml/KineticLaw.cpp:432:46: note: ‘sid’ declared here
2025-09-08T00:16:31,936     432 | KineticLaw::setTimeUnits (const std::string& sid)
2025-09-08T00:16:31,936         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:31,936   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-08T00:16:31,936   ./base/sbml/KineticLaw.cpp:463:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:31,936     463 |   if (&(sid) == NULL)
2025-09-08T00:16:31,937         |              ^
2025-09-08T00:16:31,937   ./base/sbml/KineticLaw.cpp:460:51: note: ‘sid’ declared here
2025-09-08T00:16:31,937     460 | KineticLaw::setSubstanceUnits (const std::string& sid)
2025-09-08T00:16:31,937         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:31,951   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-08T00:16:31,951   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:31,951    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-08T00:16:31,951         |                ^
2025-09-08T00:16:31,951   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2025-09-08T00:16:31,951    1032 | KineticLaw::removeParameter (const std::string& sid)
2025-09-08T00:16:31,951         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:31,951   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-08T00:16:31,952   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:31,952    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-08T00:16:31,952         |                ^
2025-09-08T00:16:31,952   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2025-09-08T00:16:31,952    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2025-09-08T00:16:31,952         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:31,977   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2025-09-08T00:16:31,978   ./base/sbml/KineticLaw.cpp:1611:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:31,978    1611 |   catch (SBMLConstructorException)
2025-09-08T00:16:31,978         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:31,978   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:16:31,978   ./base/sbml/KineticLaw.cpp:1627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:31,978    1627 |   catch (SBMLConstructorException)
2025-09-08T00:16:31,979         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:32,449   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-08T00:16:32,449   ./base/sbml/KineticLaw.cpp:1034:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:32,449    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-08T00:16:32,449         |                         ^
2025-09-08T00:16:32,450   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-08T00:16:32,450   ./base/sbml/KineticLaw.cpp:1045:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:32,450    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-08T00:16:32,450         |                         ^
2025-09-08T00:16:32,453   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-08T00:16:32,453   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:32,454     363 |   if (&(formula) == NULL)
2025-09-08T00:16:32,454         |   ^~
2025-09-08T00:16:32,458   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-08T00:16:32,459   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:32,459     143 |   if (&rhs == NULL)
2025-09-08T00:16:32,459         |   ^~
2025-09-08T00:16:32,462   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-08T00:16:32,462   ./base/sbml/KineticLaw.cpp:435:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:32,462     435 |   if (&(sid) == NULL)
2025-09-08T00:16:32,463         |   ^~
2025-09-08T00:16:32,463   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-08T00:16:32,463   ./base/sbml/KineticLaw.cpp:463:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:32,463     463 |   if (&(sid) == NULL)
2025-09-08T00:16:32,463         |   ^~
2025-09-08T00:16:32,469   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-08T00:16:32,469   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:32,469     117 |   if (&orig == NULL)
2025-09-08T00:16:32,470         |   ^~
2025-09-08T00:16:38,099   In file included from ./base/sbml/ListOf.cpp:37:
2025-09-08T00:16:38,099   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:38,099      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:38,099         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:38,099   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:16:38,099                    from ./base/sbml/ListOf.cpp:34:
2025-09-08T00:16:38,099   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:38,099     117 |     struct unary_function
2025-09-08T00:16:38,100         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:38,273   ./base/sbml/ListOf.cpp:76:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:38,273      76 | struct Delete : public unary_function<SBase*, void>
2025-09-08T00:16:38,273         |                        ^~~~~~~~~~~~~~
2025-09-08T00:16:38,273   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:38,274     117 |     struct unary_function
2025-09-08T00:16:38,274         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:38,275   ./base/sbml/ListOf.cpp:94:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:38,276      94 | struct Clone : public unary_function<SBase*, SBase*>
2025-09-08T00:16:38,276         |                       ^~~~~~~~~~~~~~
2025-09-08T00:16:38,276   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:38,276     117 |     struct unary_function
2025-09-08T00:16:38,276         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:38,293   ./base/sbml/ListOf.cpp:453:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:38,293     453 | struct SetSBMLDocument : public unary_function<SBase*, void>
2025-09-08T00:16:38,293         |                                 ^~~~~~~~~~~~~~
2025-09-08T00:16:38,293   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:38,293     117 |     struct unary_function
2025-09-08T00:16:38,294         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:38,294   ./base/sbml/ListOf.cpp:465:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:38,294     465 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2025-09-08T00:16:38,294         |                                     ^~~~~~~~~~~~~~
2025-09-08T00:16:38,294   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:38,294     117 |     struct unary_function
2025-09-08T00:16:38,294         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:38,296   ./base/sbml/ListOf.cpp:537:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:38,297     537 | struct Write : public unary_function<SBase*, void>
2025-09-08T00:16:38,297         |                       ^~~~~~~~~~~~~~
2025-09-08T00:16:38,297   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:38,297     117 |     struct unary_function
2025-09-08T00:16:38,297         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:43,004   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:16:43,004                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:16:43,004                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:16:43,004                    from ./base/sbml/LocalParameter.cpp:42:
2025-09-08T00:16:43,004   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:43,005      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:43,005         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:43,005   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:43,005                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:16:43,005                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:16:43,005                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:16:43,005                    from ./base/sbml/LocalParameter.cpp:35:
2025-09-08T00:16:43,005   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:43,005     117 |     struct unary_function
2025-09-08T00:16:43,006         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:43,233   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-08T00:16:43,233   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:16:43,233     103 |   if (&orig == NULL)
2025-09-08T00:16:43,233         |             ^
2025-09-08T00:16:43,233   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2025-09-08T00:16:43,233     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2025-09-08T00:16:43,233         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:43,234   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-08T00:16:43,234   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:16:43,234     116 |   if (&orig == NULL)
2025-09-08T00:16:43,234         |             ^
2025-09-08T00:16:43,234   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2025-09-08T00:16:43,234     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2025-09-08T00:16:43,235         |                                ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:43,235   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-08T00:16:43,235   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:16:43,235     126 |   if (&rhs == NULL)
2025-09-08T00:16:43,235         |            ^
2025-09-08T00:16:43,235   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2025-09-08T00:16:43,236     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2025-09-08T00:16:43,236         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:43,242   ./base/sbml/LocalParameter.cpp: At global scope:
2025-09-08T00:16:43,242   ./base/sbml/LocalParameter.cpp:386:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:43,242     386 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-08T00:16:43,242         |                       ^~~~~~~~~~~~~~
2025-09-08T00:16:43,243   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:43,243     117 |     struct unary_function
2025-09-08T00:16:43,243         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:43,246   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-08T00:16:43,246   ./base/sbml/LocalParameter.cpp:411:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:43,246     411 |   if (&(sid) == NULL)
2025-09-08T00:16:43,246         |              ^
2025-09-08T00:16:43,246   ./base/sbml/LocalParameter.cpp:407:48: note: ‘sid’ declared here
2025-09-08T00:16:43,246     407 | ListOfLocalParameters::get (const std::string& sid) const
2025-09-08T00:16:43,246         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:43,250   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-08T00:16:43,250   ./base/sbml/LocalParameter.cpp:453:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:43,250     453 |   if (&(sid) != NULL)
2025-09-08T00:16:43,250         |              ^
2025-09-08T00:16:43,251   ./base/sbml/LocalParameter.cpp:448:51: note: ‘sid’ declared here
2025-09-08T00:16:43,251     448 | ListOfLocalParameters::remove (const std::string& sid)
2025-09-08T00:16:43,251         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:43,255   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2025-09-08T00:16:43,256   ./base/sbml/LocalParameter.cpp:533:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:43,256     533 |   catch (SBMLConstructorException)
2025-09-08T00:16:43,256         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:43,256   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:16:43,256   ./base/sbml/LocalParameter.cpp:549:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:43,257     549 |   catch (SBMLConstructorException)
2025-09-08T00:16:43,257         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:43,742   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-08T00:16:43,742   ./base/sbml/LocalParameter.cpp:411:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:43,742     411 |   if (&(sid) == NULL)
2025-09-08T00:16:43,742         |   ^~
2025-09-08T00:16:43,745   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-08T00:16:43,745   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:43,745     103 |   if (&orig == NULL)
2025-09-08T00:16:43,745         |   ^~
2025-09-08T00:16:43,745   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-08T00:16:43,745   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:43,745     116 |   if (&orig == NULL)
2025-09-08T00:16:43,745         |   ^~
2025-09-08T00:16:43,746   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-08T00:16:43,746   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:43,746     126 |   if (&rhs == NULL)
2025-09-08T00:16:43,746         |   ^~
2025-09-08T00:16:43,753   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-08T00:16:43,753   ./base/sbml/LocalParameter.cpp:453:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:43,753     453 |   if (&(sid) != NULL)
2025-09-08T00:16:43,753         |   ^~
2025-09-08T00:16:47,997   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:16:47,997                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:16:47,997                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:16:47,997                    from ./base/sbml/Model.cpp:41:
2025-09-08T00:16:47,997   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:16:47,998      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:16:47,998         |                           ^~~~~~~~~~~~~~
2025-09-08T00:16:47,998   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:16:47,998                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:16:47,998                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:16:47,998                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:16:47,998                    from ./base/sbml/Model.cpp:33:
2025-09-08T00:16:47,998   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:16:47,998     117 |     struct unary_function
2025-09-08T00:16:47,998         |            ^~~~~~~~~~~~~~
2025-09-08T00:16:48,319   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-08T00:16:48,319   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:16:48,319     175 |   if (&orig == NULL)
2025-09-08T00:16:48,319         |             ^
2025-09-08T00:16:48,319   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2025-09-08T00:16:48,319     160 | Model::Model(const Model& orig) :
2025-09-08T00:16:48,320         |              ~~~~~~~~~~~~~^~~~
2025-09-08T00:16:48,323   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-08T00:16:48,323   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:16:48,323     216 |   if (&rhs == NULL)
2025-09-08T00:16:48,323         |            ^
2025-09-08T00:16:48,323   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2025-09-08T00:16:48,323     214 | Model& Model::operator=(const Model& rhs)
2025-09-08T00:16:48,323         |                         ~~~~~~~~~~~~~^~~
2025-09-08T00:16:48,366   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-08T00:16:48,367   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:16:48,367     718 |   if (&(sid) == NULL)
2025-09-08T00:16:48,367         |              ^
2025-09-08T00:16:48,367   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2025-09-08T00:16:48,367     707 | Model::setId (const std::string& sid)
2025-09-08T00:16:48,367         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:16:48,367   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-08T00:16:48,367   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:16:48,368     743 |   if (&(name) == NULL)
2025-09-08T00:16:48,368         |               ^
2025-09-08T00:16:48,368   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2025-09-08T00:16:48,368     738 | Model::setName (const std::string& name)
2025-09-08T00:16:48,368         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:16:48,369   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-08T00:16:48,369   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T00:16:48,369     773 |   if (&(units) == NULL)
2025-09-08T00:16:48,369         |                ^
2025-09-08T00:16:48,369   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2025-09-08T00:16:48,369     771 | Model::setSubstanceUnits (const std::string& units)
2025-09-08T00:16:48,369         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:16:48,370   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-08T00:16:48,370   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T00:16:48,370     799 |   if (&(units) == NULL)
2025-09-08T00:16:48,370         |                ^
2025-09-08T00:16:48,370   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2025-09-08T00:16:48,370     797 | Model::setTimeUnits (const std::string& units)
2025-09-08T00:16:48,370         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:16:48,371   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-08T00:16:48,371   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T00:16:48,371     825 |   if (&(units) == NULL)
2025-09-08T00:16:48,371         |                ^
2025-09-08T00:16:48,371   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2025-09-08T00:16:48,371     823 | Model::setVolumeUnits (const std::string& units)
2025-09-08T00:16:48,371         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:16:48,372   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-08T00:16:48,372   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T00:16:48,372     851 |   if (&(units) == NULL)
2025-09-08T00:16:48,372         |                ^
2025-09-08T00:16:48,372   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2025-09-08T00:16:48,372     849 | Model::setAreaUnits (const std::string& units)
2025-09-08T00:16:48,372         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:16:48,373   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-08T00:16:48,373   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T00:16:48,373     877 |   if (&(units) == NULL)
2025-09-08T00:16:48,373         |                ^
2025-09-08T00:16:48,373   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2025-09-08T00:16:48,373     875 | Model::setLengthUnits (const std::string& units)
2025-09-08T00:16:48,373         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:16:48,374   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-08T00:16:48,374   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T00:16:48,374     903 |   if (&(units) == NULL)
2025-09-08T00:16:48,374         |                ^
2025-09-08T00:16:48,374   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2025-09-08T00:16:48,374     901 | Model::setExtentUnits (const std::string& units)
2025-09-08T00:16:48,375         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:16:48,375   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-08T00:16:48,375   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-08T00:16:48,375     929 |   if (&(id) == NULL)
2025-09-08T00:16:48,375         |             ^
2025-09-08T00:16:48,375   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2025-09-08T00:16:48,375     927 | Model::setConversionFactor (const std::string& id)
2025-09-08T00:16:48,376         |                             ~~~~~~~~~~~~~~~~~~~^~
2025-09-08T00:16:48,544   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2025-09-08T00:16:48,544   ./base/sbml/Model.cpp:6111:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:48,544    6111 |   catch (SBMLConstructorException)
2025-09-08T00:16:48,544         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:48,545   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:16:48,545   ./base/sbml/Model.cpp:6127:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:16:48,545    6127 |   catch (SBMLConstructorException)
2025-09-08T00:16:48,545         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:16:49,238   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-08T00:16:49,238   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,238     216 |   if (&rhs == NULL)
2025-09-08T00:16:49,238         |   ^~
2025-09-08T00:16:49,254   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-08T00:16:49,254   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,254     718 |   if (&(sid) == NULL)
2025-09-08T00:16:49,254         |   ^~
2025-09-08T00:16:49,254   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-08T00:16:49,254   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,255     743 |   if (&(name) == NULL)
2025-09-08T00:16:49,255         |   ^~
2025-09-08T00:16:49,255   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-08T00:16:49,255   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,255     773 |   if (&(units) == NULL)
2025-09-08T00:16:49,255         |   ^~
2025-09-08T00:16:49,255   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-08T00:16:49,255   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,255     799 |   if (&(units) == NULL)
2025-09-08T00:16:49,255         |   ^~
2025-09-08T00:16:49,256   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-08T00:16:49,256   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,256     825 |   if (&(units) == NULL)
2025-09-08T00:16:49,256         |   ^~
2025-09-08T00:16:49,256   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-08T00:16:49,256   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,256     851 |   if (&(units) == NULL)
2025-09-08T00:16:49,256         |   ^~
2025-09-08T00:16:49,256   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-08T00:16:49,257   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,257     877 |   if (&(units) == NULL)
2025-09-08T00:16:49,257         |   ^~
2025-09-08T00:16:49,257   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-08T00:16:49,257   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,257     903 |   if (&(units) == NULL)
2025-09-08T00:16:49,257         |   ^~
2025-09-08T00:16:49,258   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-08T00:16:49,258   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,258     929 |   if (&(id) == NULL)
2025-09-08T00:16:49,258         |   ^~
2025-09-08T00:16:49,279   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-08T00:16:49,279   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:16:49,279     175 |   if (&orig == NULL)
2025-09-08T00:16:49,279         |   ^~
2025-09-08T00:17:03,603   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:17:03,604                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:17:03,604                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:17:03,604                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2025-09-08T00:17:03,604   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:03,604      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:03,604         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:03,604   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:03,604                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:17:03,605                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:17:03,605                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:17:03,605                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2025-09-08T00:17:03,605   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:03,605     117 |     struct unary_function
2025-09-08T00:17:03,605         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:03,859   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)’:
2025-09-08T00:17:03,860   ./base/sbml/ModifierSpeciesReference.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:03,860     163 |   catch (SBMLConstructorException)
2025-09-08T00:17:03,860         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:03,860   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:17:03,861   ./base/sbml/ModifierSpeciesReference.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:03,861     179 |   catch (SBMLConstructorException)
2025-09-08T00:17:03,861         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:07,782   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:17:07,782                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:17:07,782                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:17:07,782                    from ./base/sbml/Parameter.cpp:42:
2025-09-08T00:17:07,782   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:07,782      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:07,783         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:07,783   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:07,783                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:17:07,783                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:17:07,783                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:17:07,783                    from ./base/sbml/Parameter.cpp:35:
2025-09-08T00:17:07,783   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:07,783     117 |     struct unary_function
2025-09-08T00:17:07,783         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:08,015   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-08T00:17:08,015   ./base/sbml/Parameter.cpp:131:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:17:08,015     131 |   if (&orig == NULL)
2025-09-08T00:17:08,015         |             ^
2025-09-08T00:17:08,015   ./base/sbml/Parameter.cpp:128:39: note: ‘orig’ declared here
2025-09-08T00:17:08,015     128 | Parameter::Parameter(const Parameter& orig) :
2025-09-08T00:17:08,016         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:17:08,017   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-08T00:17:08,017   ./base/sbml/Parameter.cpp:155:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:17:08,017     155 |   if (&rhs == NULL)
2025-09-08T00:17:08,017         |            ^
2025-09-08T00:17:08,017   ./base/sbml/Parameter.cpp:153:50: note: ‘rhs’ declared here
2025-09-08T00:17:08,017     153 | Parameter& Parameter::operator=(const Parameter& rhs)
2025-09-08T00:17:08,017         |                                 ~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:08,021   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-08T00:17:08,021   ./base/sbml/Parameter.cpp:342:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:08,021     342 |   if (&(sid) == NULL)
2025-09-08T00:17:08,021         |              ^
2025-09-08T00:17:08,021   ./base/sbml/Parameter.cpp:331:38: note: ‘sid’ declared here
2025-09-08T00:17:08,021     331 | Parameter::setId (const std::string& sid)
2025-09-08T00:17:08,021         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:08,021   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-08T00:17:08,022   ./base/sbml/Parameter.cpp:367:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:17:08,022     367 |   if (&(name) == NULL)
2025-09-08T00:17:08,022         |               ^
2025-09-08T00:17:08,022   ./base/sbml/Parameter.cpp:362:40: note: ‘name’ declared here
2025-09-08T00:17:08,022     362 | Parameter::setName (const std::string& name)
2025-09-08T00:17:08,022         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:17:08,023   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-08T00:17:08,023   ./base/sbml/Parameter.cpp:409:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T00:17:08,023     409 |   if (&(units) == NULL)
2025-09-08T00:17:08,023         |                ^
2025-09-08T00:17:08,023   ./base/sbml/Parameter.cpp:407:41: note: ‘units’ declared here
2025-09-08T00:17:08,023     407 | Parameter::setUnits (const std::string& units)
2025-09-08T00:17:08,024         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:17:08,076   ./base/sbml/Parameter.cpp: At global scope:
2025-09-08T00:17:08,076   ./base/sbml/Parameter.cpp:1523:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:08,076    1523 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-08T00:17:08,077         |                       ^~~~~~~~~~~~~~
2025-09-08T00:17:08,077   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:08,077     117 |     struct unary_function
2025-09-08T00:17:08,077         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:08,079   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-08T00:17:08,080   ./base/sbml/Parameter.cpp:1546:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:08,080    1546 |   if (&(sid) == NULL)
2025-09-08T00:17:08,080         |              ^
2025-09-08T00:17:08,080   ./base/sbml/Parameter.cpp:1542:43: note: ‘sid’ declared here
2025-09-08T00:17:08,080    1542 | ListOfParameters::get (const std::string& sid) const
2025-09-08T00:17:08,080         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:08,083   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-08T00:17:08,083   ./base/sbml/Parameter.cpp:1573:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:08,083    1573 |   if (&(sid) != NULL)
2025-09-08T00:17:08,083         |              ^
2025-09-08T00:17:08,084   ./base/sbml/Parameter.cpp:1568:46: note: ‘sid’ declared here
2025-09-08T00:17:08,084    1568 | ListOfParameters::remove (const std::string& sid)
2025-09-08T00:17:08,084         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:08,088   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2025-09-08T00:17:08,088   ./base/sbml/Parameter.cpp:1653:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:08,089    1653 |   catch (SBMLConstructorException)
2025-09-08T00:17:08,089         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:08,089   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:17:08,089   ./base/sbml/Parameter.cpp:1669:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:08,089    1669 |   catch (SBMLConstructorException)
2025-09-08T00:17:08,089         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:08,616   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-08T00:17:08,616   ./base/sbml/Parameter.cpp:1546:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:08,616    1546 |   if (&(sid) == NULL)
2025-09-08T00:17:08,616         |   ^~
2025-09-08T00:17:08,619   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-08T00:17:08,619   ./base/sbml/Parameter.cpp:131:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:08,619     131 |   if (&orig == NULL)
2025-09-08T00:17:08,619         |   ^~
2025-09-08T00:17:08,620   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-08T00:17:08,620   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:08,620     155 |   if (&rhs == NULL)
2025-09-08T00:17:08,620         |   ^~
2025-09-08T00:17:08,622   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-08T00:17:08,622   ./base/sbml/Parameter.cpp:342:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:08,622     342 |   if (&(sid) == NULL)
2025-09-08T00:17:08,622         |   ^~
2025-09-08T00:17:08,623   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-08T00:17:08,623   ./base/sbml/Parameter.cpp:367:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:08,623     367 |   if (&(name) == NULL)
2025-09-08T00:17:08,623         |   ^~
2025-09-08T00:17:08,623   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-08T00:17:08,623   ./base/sbml/Parameter.cpp:409:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:08,623     409 |   if (&(units) == NULL)
2025-09-08T00:17:08,623         |   ^~
2025-09-08T00:17:08,640   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-08T00:17:08,640   ./base/sbml/Parameter.cpp:1573:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:08,640    1573 |   if (&(sid) != NULL)
2025-09-08T00:17:08,640         |   ^~
2025-09-08T00:17:16,931   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:17:16,931                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:17:16,932                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:17:16,932                    from ./base/sbml/Priority.cpp:45:
2025-09-08T00:17:16,932   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:16,932      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:16,932         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:16,932   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:16,932                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:17:16,932                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:17:16,933                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:17:16,933                    from ./base/sbml/Priority.cpp:33:
2025-09-08T00:17:16,933   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:16,933     117 |     struct unary_function
2025-09-08T00:17:16,933         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:17,161   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-08T00:17:17,161   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:17:17,161     100 |   if (&orig == NULL)
2025-09-08T00:17:17,161         |             ^
2025-09-08T00:17:17,162   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2025-09-08T00:17:17,162      96 | Priority::Priority (const Priority& orig) :
2025-09-08T00:17:17,162         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:17:17,163   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-08T00:17:17,163   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:17:17,163     122 |   if (&rhs == NULL)
2025-09-08T00:17:17,163         |            ^
2025-09-08T00:17:17,163   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2025-09-08T00:17:17,163     120 | Priority& Priority::operator=(const Priority& rhs)
2025-09-08T00:17:17,164         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:17,176   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2025-09-08T00:17:17,177   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:17,177     503 |   catch (SBMLConstructorException)
2025-09-08T00:17:17,177         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:17,177   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:17:17,177   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:17,178     519 |   catch (SBMLConstructorException)
2025-09-08T00:17:17,178         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:17,604   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-08T00:17:17,604   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:17,604     100 |   if (&orig == NULL)
2025-09-08T00:17:17,604         |   ^~
2025-09-08T00:17:17,604   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-08T00:17:17,604   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:17,604     122 |   if (&rhs == NULL)
2025-09-08T00:17:17,605         |   ^~
2025-09-08T00:17:21,267   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:17:21,267                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:17:21,267                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:17:21,267                    from ./base/sbml/RateRule.cpp:49:
2025-09-08T00:17:21,268   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:21,268      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:21,268         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:21,268   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:21,268                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:17:21,268                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:17:21,268                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:17:21,268                    from ./base/sbml/RateRule.cpp:34:
2025-09-08T00:17:21,268   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:21,269     117 |     struct unary_function
2025-09-08T00:17:21,269         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:21,497   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_create(unsigned int, unsigned int)’:
2025-09-08T00:17:21,497   ./base/sbml/RateRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:21,497     154 |   catch (SBMLConstructorException)
2025-09-08T00:17:21,498         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:21,498   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:17:21,498   ./base/sbml/RateRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:21,498     170 |   catch (SBMLConstructorException)
2025-09-08T00:17:21,498         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:25,194   In file included from ./base//sbml/SpeciesReference.h:260,
2025-09-08T00:17:25,195                    from ./base/sbml/Reaction.cpp:40:
2025-09-08T00:17:25,195   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:25,195      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:25,195         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:25,195   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:25,195                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:17:25,195                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:17:25,195                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:17:25,196                    from ./base/sbml/Reaction.cpp:33:
2025-09-08T00:17:25,196   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:25,196     117 |     struct unary_function
2025-09-08T00:17:25,196         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:25,548   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-08T00:17:25,548   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:17:25,549     185 |   if (&orig == NULL)
2025-09-08T00:17:25,549         |             ^
2025-09-08T00:17:25,549   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2025-09-08T00:17:25,549     178 | Reaction::Reaction (const Reaction& orig) :
2025-09-08T00:17:25,549         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:17:25,551   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-08T00:17:25,551   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:17:25,551     215 |   if (&rhs == NULL)
2025-09-08T00:17:25,551         |            ^
2025-09-08T00:17:25,551   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2025-09-08T00:17:25,551     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2025-09-08T00:17:25,551         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:25,566   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-08T00:17:25,566   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:25,567     549 |   if (&(sid) == NULL)
2025-09-08T00:17:25,567         |              ^
2025-09-08T00:17:25,567   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2025-09-08T00:17:25,567     538 | Reaction::setId (const std::string& sid)
2025-09-08T00:17:25,567         |                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:25,567   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-08T00:17:25,567   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:17:25,567     574 |   if (&(name) == NULL)
2025-09-08T00:17:25,568         |               ^
2025-09-08T00:17:25,568   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2025-09-08T00:17:25,568     569 | Reaction::setName (const std::string& name)
2025-09-08T00:17:25,568         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:17:25,570   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-08T00:17:25,571   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:25,571     665 |   if (&(sid) == NULL)
2025-09-08T00:17:25,571         |              ^
2025-09-08T00:17:25,571   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2025-09-08T00:17:25,571     663 | Reaction::setCompartment (const std::string& sid)
2025-09-08T00:17:25,571         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:25,619   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-08T00:17:25,619   ./base/sbml/Reaction.cpp:1900:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:25,619    1900 |   if (&(sid) == NULL)
2025-09-08T00:17:25,619         |              ^
2025-09-08T00:17:25,619   ./base/sbml/Reaction.cpp:1896:42: note: ‘sid’ declared here
2025-09-08T00:17:25,619    1896 | ListOfReactions::get (const std::string& sid) const
2025-09-08T00:17:25,619         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:25,622   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-08T00:17:25,623   ./base/sbml/Reaction.cpp:1927:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:25,623    1927 |   if (&(sid) != NULL)
2025-09-08T00:17:25,623         |              ^
2025-09-08T00:17:25,623   ./base/sbml/Reaction.cpp:1922:45: note: ‘sid’ declared here
2025-09-08T00:17:25,623    1922 | ListOfReactions::remove (const std::string& sid)
2025-09-08T00:17:25,623         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:25,628   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2025-09-08T00:17:25,628   ./base/sbml/Reaction.cpp:2005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:25,628    2005 |   catch (SBMLConstructorException)
2025-09-08T00:17:25,628         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:25,628   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:17:25,629   ./base/sbml/Reaction.cpp:2021:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:25,629    2021 |   catch (SBMLConstructorException)
2025-09-08T00:17:25,629         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:26,192   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-08T00:17:26,192   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:26,192     215 |   if (&rhs == NULL)
2025-09-08T00:17:26,192         |   ^~
2025-09-08T00:17:26,197   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-08T00:17:26,197   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:26,197     549 |   if (&(sid) == NULL)
2025-09-08T00:17:26,197         |   ^~
2025-09-08T00:17:26,198   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-08T00:17:26,198   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:26,198     574 |   if (&(name) == NULL)
2025-09-08T00:17:26,198         |   ^~
2025-09-08T00:17:26,198   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-08T00:17:26,198   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:26,198     665 |   if (&(sid) == NULL)
2025-09-08T00:17:26,198         |   ^~
2025-09-08T00:17:26,201   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-08T00:17:26,201   ./base/sbml/Reaction.cpp:1900:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:26,201    1900 |   if (&(sid) == NULL)
2025-09-08T00:17:26,202         |   ^~
2025-09-08T00:17:26,209   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-08T00:17:26,209   ./base/sbml/Reaction.cpp:1927:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:26,209    1927 |   if (&(sid) != NULL)
2025-09-08T00:17:26,209         |   ^~
2025-09-08T00:17:26,212   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-08T00:17:26,212   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:26,212     185 |   if (&orig == NULL)
2025-09-08T00:17:26,212         |   ^~
2025-09-08T00:17:33,743   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:17:33,743                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:17:33,743                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:17:33,743                    from ./base/sbml/Rule.cpp:49:
2025-09-08T00:17:33,743   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:33,743      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:33,744         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:33,744   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:33,744                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:17:33,744                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:17:33,745                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:17:33,745                    from ./base/sbml/Rule.cpp:34:
2025-09-08T00:17:33,745   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:33,745     117 |     struct unary_function
2025-09-08T00:17:33,745         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:33,976   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-08T00:17:33,976   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:17:33,976     110 |   if (&orig == NULL)
2025-09-08T00:17:33,976         |             ^
2025-09-08T00:17:33,976   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2025-09-08T00:17:33,976     106 | Rule::Rule (const Rule& orig) :
2025-09-08T00:17:33,977         |             ~~~~~~~~~~~~^~~~
2025-09-08T00:17:33,979   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-08T00:17:33,979   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:17:33,979     137 |   if (&rhs == NULL)
2025-09-08T00:17:33,980         |            ^
2025-09-08T00:17:33,980   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2025-09-08T00:17:33,980     135 | Rule& Rule::operator=(const Rule& rhs)
2025-09-08T00:17:33,980         |                       ~~~~~~~~~~~~^~~
2025-09-08T00:17:33,986   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-08T00:17:33,986   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-08T00:17:33,986     326 |   if (&(formula) == NULL)
2025-09-08T00:17:33,986         |                  ^
2025-09-08T00:17:33,986   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2025-09-08T00:17:33,987     324 | Rule::setFormula (const std::string& formula)
2025-09-08T00:17:33,987         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:17:33,990   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-08T00:17:33,991   ./base/sbml/Rule.cpp:400:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:33,991     400 |   if (&(sid) == NULL)
2025-09-08T00:17:33,991         |              ^
2025-09-08T00:17:33,991   ./base/sbml/Rule.cpp:398:39: note: ‘sid’ declared here
2025-09-08T00:17:33,991     398 | Rule::setVariable (const std::string& sid)
2025-09-08T00:17:33,991         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:33,992   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-08T00:17:33,993   ./base/sbml/Rule.cpp:428:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2025-09-08T00:17:33,993     428 |   if (&(sname) == NULL)
2025-09-08T00:17:33,993         |                ^
2025-09-08T00:17:33,993   ./base/sbml/Rule.cpp:425:36: note: ‘sname’ declared here
2025-09-08T00:17:33,993     425 | Rule::setUnits (const std::string& sname)
2025-09-08T00:17:33,993         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:17:34,041   ./base/sbml/Rule.cpp: At global scope:
2025-09-08T00:17:34,041   ./base/sbml/Rule.cpp:1417:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:34,041    1417 | struct IdEqRule : public unary_function<SBase*, bool>
2025-09-08T00:17:34,041         |                          ^~~~~~~~~~~~~~
2025-09-08T00:17:34,041   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:34,042     117 |     struct unary_function
2025-09-08T00:17:34,042         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:34,045   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-08T00:17:34,045   ./base/sbml/Rule.cpp:1442:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:34,045    1442 |   if (&(sid) == NULL)
2025-09-08T00:17:34,045         |              ^
2025-09-08T00:17:34,046   ./base/sbml/Rule.cpp:1438:38: note: ‘sid’ declared here
2025-09-08T00:17:34,046    1438 | ListOfRules::get (const std::string& sid) const
2025-09-08T00:17:34,046         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:34,050   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-08T00:17:34,051   ./base/sbml/Rule.cpp:1483:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:17:34,051    1483 |   if (&(sid) != NULL)
2025-09-08T00:17:34,051         |              ^
2025-09-08T00:17:34,051   ./base/sbml/Rule.cpp:1478:41: note: ‘sid’ declared here
2025-09-08T00:17:34,051    1478 | ListOfRules::remove (const std::string& sid)
2025-09-08T00:17:34,051         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:34,066   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2025-09-08T00:17:34,066   ./base/sbml/Rule.cpp:1672:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:34,066    1672 |   catch (SBMLConstructorException)
2025-09-08T00:17:34,066         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:34,067   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:17:34,068   ./base/sbml/Rule.cpp:1688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:34,068    1688 |   catch (SBMLConstructorException)
2025-09-08T00:17:34,068         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:34,069   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2025-09-08T00:17:34,069   ./base/sbml/Rule.cpp:1704:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:34,069    1704 |   catch (SBMLConstructorException)
2025-09-08T00:17:34,069         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:34,070   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:17:34,070   ./base/sbml/Rule.cpp:1720:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:34,071    1720 |   catch (SBMLConstructorException)
2025-09-08T00:17:34,071         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:34,072   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2025-09-08T00:17:34,072   ./base/sbml/Rule.cpp:1736:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:34,072    1736 |   catch (SBMLConstructorException)
2025-09-08T00:17:34,072         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:34,073   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:17:34,073   ./base/sbml/Rule.cpp:1752:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:34,073    1752 |   catch (SBMLConstructorException)
2025-09-08T00:17:34,073         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:34,600   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-08T00:17:34,600   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:34,601     326 |   if (&(formula) == NULL)
2025-09-08T00:17:34,601         |   ^~
2025-09-08T00:17:34,608   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-08T00:17:34,608   ./base/sbml/Rule.cpp:1442:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:34,608    1442 |   if (&(sid) == NULL)
2025-09-08T00:17:34,608         |   ^~
2025-09-08T00:17:34,613   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-08T00:17:34,613   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:34,613     110 |   if (&orig == NULL)
2025-09-08T00:17:34,613         |   ^~
2025-09-08T00:17:34,614   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-08T00:17:34,614   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:34,614     137 |   if (&rhs == NULL)
2025-09-08T00:17:34,614         |   ^~
2025-09-08T00:17:34,617   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-08T00:17:34,617   ./base/sbml/Rule.cpp:400:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:34,617     400 |   if (&(sid) == NULL)
2025-09-08T00:17:34,617         |   ^~
2025-09-08T00:17:34,618   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-08T00:17:34,618   ./base/sbml/Rule.cpp:428:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:34,618     428 |   if (&(sname) == NULL)
2025-09-08T00:17:34,618         |   ^~
2025-09-08T00:17:34,631   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-08T00:17:34,631   ./base/sbml/Rule.cpp:1483:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:34,631    1483 |   if (&(sid) != NULL)
2025-09-08T00:17:34,631         |   ^~
2025-09-08T00:17:44,786   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:17:44,787                    from ./base//sbml/Model.h:446,
2025-09-08T00:17:44,787                    from ./base/sbml/SBMLConvert.cpp:37:
2025-09-08T00:17:44,787   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:44,787      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:44,787         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:44,787   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:44,787                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:17:44,787                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:17:44,787                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:17:44,788                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T00:17:44,788                    from ./base//sbml/math/ASTNode.h:147,
2025-09-08T00:17:44,788                    from ./base/sbml/SBMLConvert.cpp:34:
2025-09-08T00:17:44,788   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:44,788     117 |     struct unary_function
2025-09-08T00:17:44,788         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:52,662   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:17:52,663                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:17:52,663                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:17:52,663                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:17:52,663                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T00:17:52,663                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2025-09-08T00:17:52,663                    from ./base/sbml/SBMLDocument.cpp:44:
2025-09-08T00:17:52,663   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:17:52,663      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:17:52,664         |                           ^~~~~~~~~~~~~~
2025-09-08T00:17:52,664   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:17:52,664                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:17:52,664                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:17:52,664                    from /usr/include/c++/14/ios:44,
2025-09-08T00:17:52,664                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:17:52,664                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:17:52,664                    from ./base/sbml/SBMLDocument.cpp:35:
2025-09-08T00:17:52,664   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:17:52,664     117 |     struct unary_function
2025-09-08T00:17:52,665         |            ^~~~~~~~~~~~~~
2025-09-08T00:17:53,006   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-08T00:17:53,006   ./base/sbml/SBMLDocument.cpp:261:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:17:53,006     261 |   if (&orig == NULL)
2025-09-08T00:17:53,006         |             ^
2025-09-08T00:17:53,006   ./base/sbml/SBMLDocument.cpp:256:49: note: ‘orig’ declared here
2025-09-08T00:17:53,006     256 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2025-09-08T00:17:53,006         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:17:53,008   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-08T00:17:53,008   ./base/sbml/SBMLDocument.cpp:302:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:17:53,009     302 |   if (&rhs == NULL)
2025-09-08T00:17:53,009         |            ^
2025-09-08T00:17:53,009   ./base/sbml/SBMLDocument.cpp:300:59: note: ‘rhs’ declared here
2025-09-08T00:17:53,009     300 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2025-09-08T00:17:53,009         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:17:53,125   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2025-09-08T00:17:53,125   ./base/sbml/SBMLDocument.cpp:1868:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:53,126    1868 |   catch (SBMLConstructorException)
2025-09-08T00:17:53,126         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:53,126   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2025-09-08T00:17:53,126   ./base/sbml/SBMLDocument.cpp:1884:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:53,126    1884 |   catch (SBMLConstructorException)
2025-09-08T00:17:53,126         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:53,127   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2025-09-08T00:17:53,127   ./base/sbml/SBMLDocument.cpp:1900:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:17:53,127    1900 |   catch (SBMLConstructorException)
2025-09-08T00:17:53,127         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:17:53,806   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-08T00:17:53,806   ./base/sbml/SBMLDocument.cpp:302:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:53,806     302 |   if (&rhs == NULL)
2025-09-08T00:17:53,806         |   ^~
2025-09-08T00:17:53,833   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-08T00:17:53,833   ./base/sbml/SBMLDocument.cpp:261:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:17:53,833     261 |   if (&orig == NULL)
2025-09-08T00:17:53,833         |   ^~
2025-09-08T00:18:02,538   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:18:02,538                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:18:02,538                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:18:02,538                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:18:02,538                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:18:02,539                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:18:02,539                    from ./base/sbml/SBMLError.cpp:41:
2025-09-08T00:18:02,539   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:02,539      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:02,539         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:02,539   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:02,539                    from ./base/sbml/SBMLError.cpp:33:
2025-09-08T00:18:02,539   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:02,539     117 |     struct unary_function
2025-09-08T00:18:02,539         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:07,074   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:07,075      86 | struct Delete : public unary_function<XMLError*, void>
2025-09-08T00:18:07,075         |                        ^~~~~~~~~~~~~~
2025-09-08T00:18:07,075   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:18:07,075                    from ./base/sbml/SBMLErrorLog.cpp:34:
2025-09-08T00:18:07,075   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:07,075     117 |     struct unary_function
2025-09-08T00:18:07,075         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:10,620   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:18:10,620                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:18:10,620                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:18:10,620                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:18:10,620                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:18:10,620                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:18:10,620                    from ./base/sbml/SBMLNamespaces.cpp:35:
2025-09-08T00:18:10,620   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:10,620      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:10,621         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:10,621   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:10,621                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:18:10,621                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:18:10,621                    from ./base/sbml/SBMLNamespaces.cpp:34:
2025-09-08T00:18:10,621   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:10,621     117 |     struct unary_function
2025-09-08T00:18:10,621         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:10,913   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-08T00:18:10,913   ./base/sbml/SBMLNamespaces.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:18:10,913     175 |   if (&orig == NULL)
2025-09-08T00:18:10,913         |             ^
2025-09-08T00:18:10,913   ./base/sbml/SBMLNamespaces.cpp:173:54: note: ‘orig’ declared here
2025-09-08T00:18:10,913     173 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2025-09-08T00:18:10,914         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:18:10,916   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-08T00:18:10,917   ./base/sbml/SBMLNamespaces.cpp:225:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:18:10,917     225 |   if (&rhs == NULL)
2025-09-08T00:18:10,917         |            ^
2025-09-08T00:18:10,917   ./base/sbml/SBMLNamespaces.cpp:223:49: note: ‘rhs’ declared here
2025-09-08T00:18:10,917     223 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2025-09-08T00:18:10,917         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:18:11,393   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-08T00:18:11,393   ./base/sbml/SBMLNamespaces.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:11,393     175 |   if (&orig == NULL)
2025-09-08T00:18:11,393         |   ^~
2025-09-08T00:18:11,393   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-08T00:18:11,393   ./base/sbml/SBMLNamespaces.cpp:225:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:11,393     225 |   if (&rhs == NULL)
2025-09-08T00:18:11,393         |   ^~
2025-09-08T00:18:16,185   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:18:16,185                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:18:16,185                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:18:16,185                    from ./base/sbml/SBMLReader.cpp:39:
2025-09-08T00:18:16,185   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:16,185      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:16,186         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:16,186   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:16,186                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:18:16,186                    from ./base/sbml/SBMLReader.cpp:33:
2025-09-08T00:18:16,186   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:16,186     117 |     struct unary_function
2025-09-08T00:18:16,186         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:16,414   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2025-09-08T00:18:16,414   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2025-09-08T00:18:16,414     139 |   if (&xml == NULL) return NULL;
2025-09-08T00:18:16,414         |            ^
2025-09-08T00:18:16,414   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2025-09-08T00:18:16,414     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2025-09-08T00:18:16,415         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:18:16,858   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:16,858     139 |   if (&xml == NULL) return NULL;
2025-09-08T00:18:16,859         |   ^~
2025-09-08T00:18:20,610   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:18:20,610                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:18:20,610                    from ./base/sbml/SBMLTransforms.cpp:33:
2025-09-08T00:18:20,610   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:20,610      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:20,611         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:20,611   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:20,611                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:18:20,611                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:18:20,611                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:18:20,611                    from ./base//sbml/SBase.h:145,
2025-09-08T00:18:20,611                    from ./base//sbml/SBMLTransforms.h:45:
2025-09-08T00:18:20,611   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:20,611     117 |     struct unary_function
2025-09-08T00:18:20,611         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:28,844   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:18:28,844                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:18:28,844                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:18:28,844                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:18:28,844                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:18:28,844                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2025-09-08T00:18:28,844   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:28,845      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:28,845         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:28,845   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:28,845                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:18:28,845                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:18:28,845                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T00:18:28,845   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:28,845     117 |     struct unary_function
2025-09-08T00:18:28,845         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:32,568   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:18:32,568                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:18:32,568                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:18:32,569                    from ./base/sbml/SBMLVisitor.cpp:34:
2025-09-08T00:18:32,569   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:32,569      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:32,569         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:32,569   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:32,569                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:18:32,569                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:18:32,569                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T00:18:32,569   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:32,569     117 |     struct unary_function
2025-09-08T00:18:32,570         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:36,261   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:18:36,261                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:18:36,261                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:18:36,262                    from ./base/sbml/SBMLWriter.cpp:42:
2025-09-08T00:18:36,262   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:36,262      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:36,262         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:36,262   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:36,262                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:18:36,262                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:18:36,262                    from /usr/include/c++/14/ios:44,
2025-09-08T00:18:36,262                    from ./base/sbml/SBMLWriter.cpp:33:
2025-09-08T00:18:36,263   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:36,263     117 |     struct unary_function
2025-09-08T00:18:36,263         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:36,490   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-08T00:18:36,490   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:18:36,490      85 |   if (&(name) == NULL)
2025-09-08T00:18:36,490         |               ^
2025-09-08T00:18:36,490   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2025-09-08T00:18:36,490      83 | SBMLWriter::setProgramName (const std::string& name)
2025-09-08T00:18:36,490         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:18:36,490   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-08T00:18:36,491   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2025-09-08T00:18:36,491     109 |   if (&(version) == NULL)
2025-09-08T00:18:36,491         |                  ^
2025-09-08T00:18:36,491   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2025-09-08T00:18:36,491     107 | SBMLWriter::setProgramVersion (const std::string& version)
2025-09-08T00:18:36,491         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:18:36,967   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-08T00:18:36,967   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:36,967      85 |   if (&(name) == NULL)
2025-09-08T00:18:36,967         |   ^~
2025-09-08T00:18:36,967   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-08T00:18:36,967   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:36,967     109 |   if (&(version) == NULL)
2025-09-08T00:18:36,967         |   ^~
2025-09-08T00:18:40,391   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:40,392     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2025-09-08T00:18:40,392         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:40,392   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:40,392                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:18:40,392                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:18:40,392                    from /usr/include/c++/14/iomanip:42,
2025-09-08T00:18:40,392                    from ./base/sbml/SBO.cpp:33:
2025-09-08T00:18:40,393   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:40,393     117 |     struct unary_function
2025-09-08T00:18:40,393         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:48,491   In file included from ./base//sbml/Parameter.h:169,
2025-09-08T00:18:48,491                    from ./base//sbml/KineticLaw.h:169,
2025-09-08T00:18:48,491                    from ./base/sbml/SBase.cpp:46:
2025-09-08T00:18:48,491   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:48,491      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:18:48,492         |                           ^~~~~~~~~~~~~~
2025-09-08T00:18:48,492   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:18:48,492                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:18:48,493                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:18:48,493                    from /usr/include/c++/14/ios:44,
2025-09-08T00:18:48,493                    from /usr/include/c++/14/istream:40,
2025-09-08T00:18:48,493                    from /usr/include/c++/14/sstream:40,
2025-09-08T00:18:48,493                    from ./base/sbml/SBase.cpp:33:
2025-09-08T00:18:48,493   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:48,493     117 |     struct unary_function
2025-09-08T00:18:48,493         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:48,972   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:48,972      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2025-09-08T00:18:48,972         |                                    ^~~~~~~~~~~~~~
2025-09-08T00:18:48,972   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:48,972     117 |     struct unary_function
2025-09-08T00:18:48,972         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:48,973   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:18:48,973      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2025-09-08T00:18:48,973         |                                   ^~~~~~~~~~~~~~
2025-09-08T00:18:48,973   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:18:48,973     117 |     struct unary_function
2025-09-08T00:18:48,973         |            ^~~~~~~~~~~~~~
2025-09-08T00:18:48,990   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T00:18:48,990   ./base/sbml/SBase.cpp:380:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:18:48,990     380 |   if (&orig == NULL)
2025-09-08T00:18:48,990         |             ^
2025-09-08T00:18:48,990   ./base/sbml/SBase.cpp:378:27: note: ‘orig’ declared here
2025-09-08T00:18:48,990     378 | SBase::SBase(const SBase& orig)
2025-09-08T00:18:48,990         |              ~~~~~~~~~~~~~^~~~
2025-09-08T00:18:48,999   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T00:18:49,000   ./base/sbml/SBase.cpp:492:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:18:49,000     492 |   if (&rhs == NULL)
2025-09-08T00:18:49,000         |            ^
2025-09-08T00:18:49,000   ./base/sbml/SBase.cpp:490:38: note: ‘rhs’ declared here
2025-09-08T00:18:49,000     490 | SBase& SBase::operator=(const SBase& rhs)
2025-09-08T00:18:49,000         |                         ~~~~~~~~~~~~~^~~
2025-09-08T00:18:49,018   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T00:18:49,018   ./base/sbml/SBase.cpp:1161:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T00:18:49,018    1161 |   if (&(metaid) == NULL)
2025-09-08T00:18:49,018         |                 ^
2025-09-08T00:18:49,018   ./base/sbml/SBase.cpp:1159:38: note: ‘metaid’ declared here
2025-09-08T00:18:49,018    1159 | SBase::setMetaId (const std::string& metaid)
2025-09-08T00:18:49,019         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:18:49,025   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T00:18:49,025   ./base/sbml/SBase.cpp:1346:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2025-09-08T00:18:49,025    1346 |   if (&(annotation) == NULL)
2025-09-08T00:18:49,025         |                     ^
2025-09-08T00:18:49,025   ./base/sbml/SBase.cpp:1344:42: note: ‘annotation’ declared here
2025-09-08T00:18:49,025    1344 | SBase::setAnnotation (const std::string& annotation)
2025-09-08T00:18:49,025         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:18:49,040   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T00:18:49,040   ./base/sbml/SBase.cpp:1716:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2025-09-08T00:18:49,040    1716 |   if (&(notes) == NULL)
2025-09-08T00:18:49,040         |                ^
2025-09-08T00:18:49,041   ./base/sbml/SBase.cpp:1713:36: note: ‘notes’ declared here
2025-09-08T00:18:49,041    1713 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2025-09-08T00:18:49,041         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:18:49,071   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T00:18:49,071   ./base/sbml/SBase.cpp:2366:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2025-09-08T00:18:49,072    2366 |   if (&(sboid) == NULL)
2025-09-08T00:18:49,072         |                ^
2025-09-08T00:18:49,072   ./base/sbml/SBase.cpp:2364:39: note: ‘sboid’ declared here
2025-09-08T00:18:49,072    2364 | SBase::setSBOTerm (const std::string &sboid)
2025-09-08T00:18:49,072         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:18:49,118   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2025-09-08T00:18:49,118   ./base/sbml/SBase.cpp:3605:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2025-09-08T00:18:49,118    3605 |   if (&pkgName == NULL)
2025-09-08T00:18:49,119         |                ^
2025-09-08T00:18:49,119   ./base/sbml/SBase.cpp:3604:22: note: ‘pkgName’ declared here
2025-09-08T00:18:49,119    3604 |   const std::string& pkgName = getPackageName();
2025-09-08T00:18:49,119         |                      ^~~~~~~
2025-09-08T00:18:49,282   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T00:18:49,282   ./base/sbml/SBase.cpp:5925:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:18:49,282    5925 |   if (&node == NULL) return;
2025-09-08T00:18:49,282         |             ^
2025-09-08T00:18:49,283   ./base/sbml/SBase.cpp:5923:22: note: ‘node’ declared here
2025-09-08T00:18:49,283    5923 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2025-09-08T00:18:49,283         |             ~~~~~~~~~^~~~
2025-09-08T00:18:49,984   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T00:18:49,984   ./base/sbml/SBase.cpp:2366:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:49,984    2366 |   if (&(sboid) == NULL)
2025-09-08T00:18:49,984         |   ^~
2025-09-08T00:18:49,991   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T00:18:49,991   ./base/sbml/SBase.cpp:1346:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:49,991    1346 |   if (&(annotation) == NULL)
2025-09-08T00:18:49,991         |   ^~
2025-09-08T00:18:50,010   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T00:18:50,010   ./base/sbml/SBase.cpp:1161:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:50,010    1161 |   if (&(metaid) == NULL)
2025-09-08T00:18:50,010         |   ^~
2025-09-08T00:18:50,059   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T00:18:50,059   ./base/sbml/SBase.cpp:492:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:50,059     492 |   if (&rhs == NULL)
2025-09-08T00:18:50,059         |   ^~
2025-09-08T00:18:50,064   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T00:18:50,064   ./base/sbml/SBase.cpp:380:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:50,064     380 |   if (&orig == NULL)
2025-09-08T00:18:50,064         |   ^~
2025-09-08T00:18:50,075   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T00:18:50,075   ./base/sbml/SBase.cpp:1716:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:50,075    1716 |   if (&(notes) == NULL)
2025-09-08T00:18:50,075         |   ^~
2025-09-08T00:18:50,080   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T00:18:50,081   ./base/sbml/SBase.cpp:5925:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:18:50,081    5925 |   if (&node == NULL) return;
2025-09-08T00:18:50,081         |   ^~
2025-09-08T00:19:06,824   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:19:06,824                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:19:06,824                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:19:06,824                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2025-09-08T00:19:06,825   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:06,825      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:06,825         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:06,825   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:06,825                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:06,825                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:19:06,825                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:19:06,825                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2025-09-08T00:19:06,825   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:06,826     117 |     struct unary_function
2025-09-08T00:19:06,826         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:07,071   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T00:19:07,071   ./base/sbml/SimpleSpeciesReference.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:19:07,071      97 |   if (&orig == NULL)
2025-09-08T00:19:07,072         |             ^
2025-09-08T00:19:07,072   ./base/sbml/SimpleSpeciesReference.cpp:94:78: note: ‘orig’ declared here
2025-09-08T00:19:07,072      94 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2025-09-08T00:19:07,072         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:07,073   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T00:19:07,073   ./base/sbml/SimpleSpeciesReference.cpp:115:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:19:07,073     115 |   if (&rhs == NULL)
2025-09-08T00:19:07,073         |            ^
2025-09-08T00:19:07,074   ./base/sbml/SimpleSpeciesReference.cpp:113:89: note: ‘rhs’ declared here
2025-09-08T00:19:07,074     113 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2025-09-08T00:19:07,074         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:07,076   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T00:19:07,076   ./base/sbml/SimpleSpeciesReference.cpp:215:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:07,076     215 |   if (&(sid) == NULL)
2025-09-08T00:19:07,077         |              ^
2025-09-08T00:19:07,077   ./base/sbml/SimpleSpeciesReference.cpp:213:56: note: ‘sid’ declared here
2025-09-08T00:19:07,077     213 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2025-09-08T00:19:07,077         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:07,077   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T00:19:07,077   ./base/sbml/SimpleSpeciesReference.cpp:237:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:07,077     237 |   if (&(sid) == NULL)
2025-09-08T00:19:07,077         |              ^
2025-09-08T00:19:07,077   ./base/sbml/SimpleSpeciesReference.cpp:235:51: note: ‘sid’ declared here
2025-09-08T00:19:07,078     235 | SimpleSpeciesReference::setId (const std::string& sid)
2025-09-08T00:19:07,078         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:07,081   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T00:19:07,082   ./base/sbml/SimpleSpeciesReference.cpp:301:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:19:07,082     301 |   if (&(name) == NULL)
2025-09-08T00:19:07,082         |               ^
2025-09-08T00:19:07,082   ./base/sbml/SimpleSpeciesReference.cpp:299:53: note: ‘name’ declared here
2025-09-08T00:19:07,082     299 | SimpleSpeciesReference::setName (const std::string& name)
2025-09-08T00:19:07,082         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:07,536   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T00:19:07,536   ./base/sbml/SimpleSpeciesReference.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:07,536      97 |   if (&orig == NULL)
2025-09-08T00:19:07,536         |   ^~
2025-09-08T00:19:07,536   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T00:19:07,536   ./base/sbml/SimpleSpeciesReference.cpp:115:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:07,536     115 |   if (&rhs == NULL)
2025-09-08T00:19:07,536         |   ^~
2025-09-08T00:19:07,537   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T00:19:07,537   ./base/sbml/SimpleSpeciesReference.cpp:215:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:07,537     215 |   if (&(sid) == NULL)
2025-09-08T00:19:07,537         |   ^~
2025-09-08T00:19:07,537   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T00:19:07,537   ./base/sbml/SimpleSpeciesReference.cpp:237:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:07,538     237 |   if (&(sid) == NULL)
2025-09-08T00:19:07,538         |   ^~
2025-09-08T00:19:07,538   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T00:19:07,538   ./base/sbml/SimpleSpeciesReference.cpp:301:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:07,538     301 |   if (&(name) == NULL)
2025-09-08T00:19:07,538         |   ^~
2025-09-08T00:19:11,953   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:19:11,953                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:19:11,953                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:19:11,953                    from ./base/sbml/Species.cpp:42:
2025-09-08T00:19:11,953   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:11,953      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:11,953         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:11,954   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:11,954                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:11,954                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:19:11,954                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:19:11,954                    from ./base/sbml/Species.cpp:35:
2025-09-08T00:19:11,954   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:11,954     117 |     struct unary_function
2025-09-08T00:19:11,954         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:12,195   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T00:19:12,196   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:19:12,196     167 |   if (&orig == NULL)
2025-09-08T00:19:12,196         |             ^
2025-09-08T00:19:12,196   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2025-09-08T00:19:12,196     164 | Species::Species(const Species& orig) :
2025-09-08T00:19:12,196         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:12,198   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T00:19:12,198   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:19:12,198     204 |   if (&rhs == NULL)
2025-09-08T00:19:12,199         |            ^
2025-09-08T00:19:12,199   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2025-09-08T00:19:12,199     202 | Species& Species::operator=(const Species& rhs)
2025-09-08T00:19:12,199         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:12,206   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T00:19:12,206   ./base/sbml/Species.cpp:616:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:12,206     616 |   if (&(sid) == NULL)
2025-09-08T00:19:12,206         |              ^
2025-09-08T00:19:12,206   ./base/sbml/Species.cpp:605:36: note: ‘sid’ declared here
2025-09-08T00:19:12,206     605 | Species::setId (const std::string& sid)
2025-09-08T00:19:12,206         |                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:12,207   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T00:19:12,207   ./base/sbml/Species.cpp:641:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:19:12,207     641 |   if (&(name) == NULL)
2025-09-08T00:19:12,207         |               ^
2025-09-08T00:19:12,207   ./base/sbml/Species.cpp:636:38: note: ‘name’ declared here
2025-09-08T00:19:12,208     636 | Species::setName (const std::string& name)
2025-09-08T00:19:12,208         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:12,208   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T00:19:12,209   ./base/sbml/Species.cpp:671:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:12,209     671 |   if (&(sid) == NULL)
2025-09-08T00:19:12,209         |              ^
2025-09-08T00:19:12,209   ./base/sbml/Species.cpp:669:45: note: ‘sid’ declared here
2025-09-08T00:19:12,209     669 | Species::setSpeciesType (const std::string& sid)
2025-09-08T00:19:12,209         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:12,210   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T00:19:12,210   ./base/sbml/Species.cpp:698:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:12,210     698 |   if (&(sid) == NULL)
2025-09-08T00:19:12,210         |              ^
2025-09-08T00:19:12,210   ./base/sbml/Species.cpp:696:45: note: ‘sid’ declared here
2025-09-08T00:19:12,210     696 | Species::setCompartment (const std::string& sid)
2025-09-08T00:19:12,210         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:12,212   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T00:19:12,212   ./base/sbml/Species.cpp:757:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:12,212     757 |   if (&(sid) == NULL)
2025-09-08T00:19:12,212         |              ^
2025-09-08T00:19:12,212   ./base/sbml/Species.cpp:755:48: note: ‘sid’ declared here
2025-09-08T00:19:12,212     755 | Species::setSubstanceUnits (const std::string& sid)
2025-09-08T00:19:12,212         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:12,213   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T00:19:12,213   ./base/sbml/Species.cpp:779:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:12,213     779 |   if (&(sid) == NULL)
2025-09-08T00:19:12,213         |              ^
2025-09-08T00:19:12,213   ./base/sbml/Species.cpp:777:50: note: ‘sid’ declared here
2025-09-08T00:19:12,213     777 | Species::setSpatialSizeUnits (const std::string& sid)
2025-09-08T00:19:12,213         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:12,217   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T00:19:12,217   ./base/sbml/Species.cpp:890:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:12,217     890 |   if (&(sid) == NULL)
2025-09-08T00:19:12,217         |              ^
2025-09-08T00:19:12,217   ./base/sbml/Species.cpp:888:50: note: ‘sid’ declared here
2025-09-08T00:19:12,217     888 | Species::setConversionFactor (const std::string& sid)
2025-09-08T00:19:12,217         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:12,272   ./base/sbml/Species.cpp: At global scope:
2025-09-08T00:19:12,272   ./base/sbml/Species.cpp:1913:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:12,272    1913 | struct IdEqS : public unary_function<SBase*, bool>
2025-09-08T00:19:12,272         |                       ^~~~~~~~~~~~~~
2025-09-08T00:19:12,273   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:12,273     117 |     struct unary_function
2025-09-08T00:19:12,273         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:12,275   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T00:19:12,276   ./base/sbml/Species.cpp:1936:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:12,276    1936 |   if (&(sid) == NULL)
2025-09-08T00:19:12,276         |              ^
2025-09-08T00:19:12,276   ./base/sbml/Species.cpp:1932:40: note: ‘sid’ declared here
2025-09-08T00:19:12,276    1932 | ListOfSpecies::get (const std::string& sid) const
2025-09-08T00:19:12,276         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:12,279   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T00:19:12,279   ./base/sbml/Species.cpp:1963:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:12,279    1963 |   if (&(sid) != NULL)
2025-09-08T00:19:12,280         |              ^
2025-09-08T00:19:12,280   ./base/sbml/Species.cpp:1958:43: note: ‘sid’ declared here
2025-09-08T00:19:12,280    1958 | ListOfSpecies::remove (const std::string& sid)
2025-09-08T00:19:12,280         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:12,285   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2025-09-08T00:19:12,285   ./base/sbml/Species.cpp:2041:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:12,285    2041 |   catch (SBMLConstructorException)
2025-09-08T00:19:12,285         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:12,286   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:19:12,286   ./base/sbml/Species.cpp:2057:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:12,286    2057 |   catch (SBMLConstructorException)
2025-09-08T00:19:12,286         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:12,845   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T00:19:12,845   ./base/sbml/Species.cpp:1936:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,846    1936 |   if (&(sid) == NULL)
2025-09-08T00:19:12,846         |   ^~
2025-09-08T00:19:12,849   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T00:19:12,849   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,849     167 |   if (&orig == NULL)
2025-09-08T00:19:12,849         |   ^~
2025-09-08T00:19:12,849   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T00:19:12,850   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,850     204 |   if (&rhs == NULL)
2025-09-08T00:19:12,850         |   ^~
2025-09-08T00:19:12,853   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T00:19:12,853   ./base/sbml/Species.cpp:616:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,853     616 |   if (&(sid) == NULL)
2025-09-08T00:19:12,853         |   ^~
2025-09-08T00:19:12,853   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T00:19:12,853   ./base/sbml/Species.cpp:641:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,853     641 |   if (&(name) == NULL)
2025-09-08T00:19:12,853         |   ^~
2025-09-08T00:19:12,853   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T00:19:12,854   ./base/sbml/Species.cpp:671:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,854     671 |   if (&(sid) == NULL)
2025-09-08T00:19:12,854         |   ^~
2025-09-08T00:19:12,854   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T00:19:12,854   ./base/sbml/Species.cpp:698:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,854     698 |   if (&(sid) == NULL)
2025-09-08T00:19:12,854         |   ^~
2025-09-08T00:19:12,854   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T00:19:12,854   ./base/sbml/Species.cpp:757:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,854     757 |   if (&(sid) == NULL)
2025-09-08T00:19:12,855         |   ^~
2025-09-08T00:19:12,855   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T00:19:12,855   ./base/sbml/Species.cpp:779:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,856     779 |   if (&(sid) == NULL)
2025-09-08T00:19:12,856         |   ^~
2025-09-08T00:19:12,856   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T00:19:12,856   ./base/sbml/Species.cpp:890:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,856     890 |   if (&(sid) == NULL)
2025-09-08T00:19:12,856         |   ^~
2025-09-08T00:19:12,870   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T00:19:12,870   ./base/sbml/Species.cpp:1963:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:12,870    1963 |   if (&(sid) != NULL)
2025-09-08T00:19:12,870         |   ^~
2025-09-08T00:19:22,781   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:19:22,781                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:19:22,781                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:19:22,781                    from ./base/sbml/SpeciesReference.cpp:48:
2025-09-08T00:19:22,781   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:22,781      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:22,781         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:22,782   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:22,782                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:22,782                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:19:22,782                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:19:22,782                    from ./base/sbml/SpeciesReference.cpp:35:
2025-09-08T00:19:22,782   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:22,782     117 |     struct unary_function
2025-09-08T00:19:22,782         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:23,027   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T00:19:23,027   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:19:23,027     129 |   if (&orig == NULL)
2025-09-08T00:19:23,027         |             ^
2025-09-08T00:19:23,027   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2025-09-08T00:19:23,028     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2025-09-08T00:19:23,028         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:23,029   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T00:19:23,029   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:19:23,029     157 |   if (&rhs == NULL)
2025-09-08T00:19:23,029         |            ^
2025-09-08T00:19:23,030   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2025-09-08T00:19:23,030     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2025-09-08T00:19:23,030         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:23,065   ./base/sbml/SpeciesReference.cpp: At global scope:
2025-09-08T00:19:23,065   ./base/sbml/SpeciesReference.cpp:1209:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:23,065    1209 | struct IdEqSSR : public unary_function<SBase*, bool>
2025-09-08T00:19:23,065         |                         ^~~~~~~~~~~~~~
2025-09-08T00:19:23,065   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:23,065     117 |     struct unary_function
2025-09-08T00:19:23,066         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:23,069   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T00:19:23,069   ./base/sbml/SpeciesReference.cpp:1251:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:23,069    1251 |   if (&(sid) == NULL)
2025-09-08T00:19:23,069         |              ^
2025-09-08T00:19:23,070   ./base/sbml/SpeciesReference.cpp:1247:50: note: ‘sid’ declared here
2025-09-08T00:19:23,070    1247 | ListOfSpeciesReferences::get (const std::string& sid) const
2025-09-08T00:19:23,070         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:23,073   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T00:19:23,073   ./base/sbml/SpeciesReference.cpp:1279:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:23,073    1279 |   if (&(sid) != NULL)
2025-09-08T00:19:23,073         |              ^
2025-09-08T00:19:23,073   ./base/sbml/SpeciesReference.cpp:1274:53: note: ‘sid’ declared here
2025-09-08T00:19:23,073    1274 | ListOfSpeciesReferences::remove (const std::string& sid)
2025-09-08T00:19:23,073         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:23,084   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2025-09-08T00:19:23,085   ./base/sbml/SpeciesReference.cpp:1448:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:23,085    1448 |   catch (SBMLConstructorException)
2025-09-08T00:19:23,085         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:23,085   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:19:23,086   ./base/sbml/SpeciesReference.cpp:1464:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:23,086    1464 |   catch (SBMLConstructorException)
2025-09-08T00:19:23,086         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:23,086   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2025-09-08T00:19:23,086   ./base/sbml/SpeciesReference.cpp:1480:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:23,086    1480 |   catch (SBMLConstructorException)
2025-09-08T00:19:23,087         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:23,087   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:19:23,087   ./base/sbml/SpeciesReference.cpp:1496:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:23,087    1496 |   catch (SBMLConstructorException)
2025-09-08T00:19:23,087         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:23,606   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T00:19:23,606   ./base/sbml/SpeciesReference.cpp:1251:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:23,606    1251 |   if (&(sid) == NULL)
2025-09-08T00:19:23,606         |   ^~
2025-09-08T00:19:23,609   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T00:19:23,609   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:23,609     129 |   if (&orig == NULL)
2025-09-08T00:19:23,609         |   ^~
2025-09-08T00:19:23,610   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T00:19:23,610   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:23,610     157 |   if (&rhs == NULL)
2025-09-08T00:19:23,610         |   ^~
2025-09-08T00:19:23,622   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T00:19:23,623   ./base/sbml/SpeciesReference.cpp:1279:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:23,623    1279 |   if (&(sid) != NULL)
2025-09-08T00:19:23,623         |   ^~
2025-09-08T00:19:29,419   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:19:29,419                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:19:29,420                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:19:29,420                    from ./base/sbml/SpeciesType.cpp:41:
2025-09-08T00:19:29,420   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:29,420      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:29,420         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:29,420   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:29,420                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:29,420                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:19:29,420                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:19:29,421                    from ./base/sbml/SpeciesType.cpp:33:
2025-09-08T00:19:29,421   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:29,421     117 |     struct unary_function
2025-09-08T00:19:29,421         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:29,650   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T00:19:29,650   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:19:29,651      92 |   if (&orig == NULL)
2025-09-08T00:19:29,651         |             ^
2025-09-08T00:19:29,651   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2025-09-08T00:19:29,651      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2025-09-08T00:19:29,651         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:29,652   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T00:19:29,652   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:19:29,652     109 |   if (&rhs == NULL)
2025-09-08T00:19:29,652         |            ^
2025-09-08T00:19:29,652   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2025-09-08T00:19:29,652     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2025-09-08T00:19:29,653         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:29,655   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T00:19:29,655   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:29,655     206 |   if (&(sid) == NULL)
2025-09-08T00:19:29,655         |              ^
2025-09-08T00:19:29,655   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2025-09-08T00:19:29,656     195 | SpeciesType::setId (const std::string& sid)
2025-09-08T00:19:29,656         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:29,656   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T00:19:29,656   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:19:29,656     231 |   if (&(name) == NULL)
2025-09-08T00:19:29,656         |               ^
2025-09-08T00:19:29,656   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2025-09-08T00:19:29,656     226 | SpeciesType::setName (const std::string& name)
2025-09-08T00:19:29,656         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:29,666   ./base/sbml/SpeciesType.cpp: At global scope:
2025-09-08T00:19:29,667   ./base/sbml/SpeciesType.cpp:541:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:29,667     541 | struct IdEqST : public unary_function<SBase*, bool>
2025-09-08T00:19:29,667         |                        ^~~~~~~~~~~~~~
2025-09-08T00:19:29,667   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:29,667     117 |     struct unary_function
2025-09-08T00:19:29,667         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:29,670   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T00:19:29,670   ./base/sbml/SpeciesType.cpp:566:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:29,670     566 |   if (&(sid) == NULL)
2025-09-08T00:19:29,671         |              ^
2025-09-08T00:19:29,671   ./base/sbml/SpeciesType.cpp:562:45: note: ‘sid’ declared here
2025-09-08T00:19:29,671     562 | ListOfSpeciesTypes::get (const std::string& sid) const
2025-09-08T00:19:29,671         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:29,674   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T00:19:29,674   ./base/sbml/SpeciesType.cpp:594:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:29,674     594 |   if (&(sid) != NULL)
2025-09-08T00:19:29,674         |              ^
2025-09-08T00:19:29,674   ./base/sbml/SpeciesType.cpp:589:48: note: ‘sid’ declared here
2025-09-08T00:19:29,674     589 | ListOfSpeciesTypes::remove (const std::string& sid)
2025-09-08T00:19:29,675         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:29,679   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2025-09-08T00:19:29,679   ./base/sbml/SpeciesType.cpp:673:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:29,679     673 |   catch (SBMLConstructorException)
2025-09-08T00:19:29,679         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:29,680   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:19:29,680   ./base/sbml/SpeciesType.cpp:689:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:29,680     689 |   catch (SBMLConstructorException)
2025-09-08T00:19:29,680         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:30,171   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T00:19:30,171   ./base/sbml/SpeciesType.cpp:566:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:30,171     566 |   if (&(sid) == NULL)
2025-09-08T00:19:30,171         |   ^~
2025-09-08T00:19:30,174   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T00:19:30,174   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:30,174      92 |   if (&orig == NULL)
2025-09-08T00:19:30,174         |   ^~
2025-09-08T00:19:30,174   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T00:19:30,174   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:30,174     109 |   if (&rhs == NULL)
2025-09-08T00:19:30,175         |   ^~
2025-09-08T00:19:30,176   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T00:19:30,176   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:30,177     206 |   if (&(sid) == NULL)
2025-09-08T00:19:30,177         |   ^~
2025-09-08T00:19:30,177   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T00:19:30,177   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:30,177     231 |   if (&(name) == NULL)
2025-09-08T00:19:30,177         |   ^~
2025-09-08T00:19:30,184   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T00:19:30,184   ./base/sbml/SpeciesType.cpp:594:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:30,184     594 |   if (&(sid) != NULL)
2025-09-08T00:19:30,184         |   ^~
2025-09-08T00:19:35,028   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:19:35,028                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:19:35,028                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:19:35,028                    from ./base/sbml/StoichiometryMath.cpp:46:
2025-09-08T00:19:35,028   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:35,028      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:35,029         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:35,029   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:35,029                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:35,029                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:19:35,029                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:19:35,029                    from ./base/sbml/StoichiometryMath.cpp:33:
2025-09-08T00:19:35,029   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:35,029     117 |     struct unary_function
2025-09-08T00:19:35,029         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:35,257   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T00:19:35,257   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:19:35,257      98 |   if (&orig == NULL)
2025-09-08T00:19:35,258         |             ^
2025-09-08T00:19:35,258   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2025-09-08T00:19:35,258      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2025-09-08T00:19:35,258         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:35,259   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T00:19:35,259   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:19:35,259     120 |   if (&rhs == NULL)
2025-09-08T00:19:35,259         |            ^
2025-09-08T00:19:35,259   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2025-09-08T00:19:35,260     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2025-09-08T00:19:35,260         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:35,276   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2025-09-08T00:19:35,276   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:35,276     627 |   catch (SBMLConstructorException)
2025-09-08T00:19:35,276         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:35,277   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:19:35,277   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:35,277     643 |   catch (SBMLConstructorException)
2025-09-08T00:19:35,277         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:35,716   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T00:19:35,716   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:35,716      98 |   if (&orig == NULL)
2025-09-08T00:19:35,716         |   ^~
2025-09-08T00:19:35,717   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T00:19:35,717   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:35,717     120 |   if (&rhs == NULL)
2025-09-08T00:19:35,717         |   ^~
2025-09-08T00:19:43,606   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:19:43,606                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:19:43,606                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:19:43,606                    from ./base/sbml/Trigger.cpp:46:
2025-09-08T00:19:43,606   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:43,606      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:43,606         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:43,607   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:43,607                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:43,607                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:19:43,607                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:19:43,607                    from ./base/sbml/Trigger.cpp:33:
2025-09-08T00:19:43,607   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:43,607     117 |     struct unary_function
2025-09-08T00:19:43,607         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:43,833   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T00:19:43,833   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:19:43,833     106 |   if (&orig == NULL)
2025-09-08T00:19:43,834         |             ^
2025-09-08T00:19:43,834   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2025-09-08T00:19:43,834     102 | Trigger::Trigger (const Trigger& orig) :
2025-09-08T00:19:43,834         |                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:43,835   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T00:19:43,835   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:19:43,835     131 |   if (&rhs == NULL)
2025-09-08T00:19:43,835         |            ^
2025-09-08T00:19:43,835   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2025-09-08T00:19:43,835     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2025-09-08T00:19:43,836         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:43,853   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2025-09-08T00:19:43,853   ./base/sbml/Trigger.cpp:670:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:43,853     670 |   catch (SBMLConstructorException)
2025-09-08T00:19:43,854         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:43,854   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:19:43,854   ./base/sbml/Trigger.cpp:686:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:43,854     686 |   catch (SBMLConstructorException)
2025-09-08T00:19:43,854         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:44,294   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T00:19:44,295   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:44,295     106 |   if (&orig == NULL)
2025-09-08T00:19:44,295         |   ^~
2025-09-08T00:19:44,295   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T00:19:44,295   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:44,295     131 |   if (&rhs == NULL)
2025-09-08T00:19:44,295         |   ^~
2025-09-08T00:19:48,388   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:19:48,389                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:19:48,389                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:19:48,389                    from ./base/sbml/Unit.cpp:41:
2025-09-08T00:19:48,389   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:48,389      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:48,389         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:48,390   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:48,390                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:48,390                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:19:48,390                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:19:48,390                    from ./base/sbml/Unit.cpp:33:
2025-09-08T00:19:48,390   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:48,390     117 |     struct unary_function
2025-09-08T00:19:48,390         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:48,620   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T00:19:48,620   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:19:48,620     150 |   if (&orig == NULL)
2025-09-08T00:19:48,620         |             ^
2025-09-08T00:19:48,620   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2025-09-08T00:19:48,621     147 | Unit::Unit(const Unit& orig) :
2025-09-08T00:19:48,621         |            ~~~~~~~~~~~~^~~~
2025-09-08T00:19:48,622   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T00:19:48,622   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:19:48,622     179 |   if (&rhs == NULL)
2025-09-08T00:19:48,622         |            ^
2025-09-08T00:19:48,622   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2025-09-08T00:19:48,622     177 | Unit& Unit::operator=(const Unit& rhs)
2025-09-08T00:19:48,622         |                       ~~~~~~~~~~~~^~~
2025-09-08T00:19:48,709   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2025-09-08T00:19:48,709   ./base/sbml/Unit.cpp:2217:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:48,709    2217 |   catch (SBMLConstructorException)
2025-09-08T00:19:48,709         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:48,709   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:19:48,710   ./base/sbml/Unit.cpp:2233:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:48,710    2233 |   catch (SBMLConstructorException)
2025-09-08T00:19:48,710         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:49,244   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T00:19:49,244   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:49,244     150 |   if (&orig == NULL)
2025-09-08T00:19:49,245         |   ^~
2025-09-08T00:19:49,245   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T00:19:49,245   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:49,245     179 |   if (&rhs == NULL)
2025-09-08T00:19:49,245         |   ^~
2025-09-08T00:19:56,095   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:19:56,095                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:19:56,095                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:19:56,095                    from ./base/sbml/UnitDefinition.cpp:44:
2025-09-08T00:19:56,096   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:56,096      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:19:56,096         |                           ^~~~~~~~~~~~~~
2025-09-08T00:19:56,096   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:19:56,096                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:19:56,096                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:19:56,097                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T00:19:56,097                    from ./base/sbml/UnitDefinition.cpp:34:
2025-09-08T00:19:56,097   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:56,097     117 |     struct unary_function
2025-09-08T00:19:56,097         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:56,328   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T00:19:56,328   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:19:56,328     104 |   if (&orig == NULL)
2025-09-08T00:19:56,328         |             ^
2025-09-08T00:19:56,329   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2025-09-08T00:19:56,329     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2025-09-08T00:19:56,329         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:56,330   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T00:19:56,330   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:19:56,330     123 |   if (&rhs == NULL)
2025-09-08T00:19:56,330         |            ^
2025-09-08T00:19:56,330   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2025-09-08T00:19:56,330     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2025-09-08T00:19:56,330         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:56,337   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T00:19:56,337   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:56,337     262 |   if (&(sid) == NULL)
2025-09-08T00:19:56,337         |              ^
2025-09-08T00:19:56,337   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2025-09-08T00:19:56,337     251 | UnitDefinition::setId (const std::string& sid)
2025-09-08T00:19:56,337         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:56,337   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T00:19:56,338   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:19:56,338     287 |   if (&(name) == NULL)
2025-09-08T00:19:56,338         |               ^
2025-09-08T00:19:56,338   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2025-09-08T00:19:56,338     282 | UnitDefinition::setName (const std::string& name)
2025-09-08T00:19:56,338         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:19:56,388   ./base/sbml/UnitDefinition.cpp: At global scope:
2025-09-08T00:19:56,388   ./base/sbml/UnitDefinition.cpp:1777:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:19:56,388    1777 | struct IdEqUD : public unary_function<SBase*, bool>
2025-09-08T00:19:56,389         |                        ^~~~~~~~~~~~~~
2025-09-08T00:19:56,389   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:19:56,389     117 |     struct unary_function
2025-09-08T00:19:56,389         |            ^~~~~~~~~~~~~~
2025-09-08T00:19:56,391   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T00:19:56,392   ./base/sbml/UnitDefinition.cpp:1802:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:56,392    1802 |   if (&(sid) == NULL)
2025-09-08T00:19:56,392         |              ^
2025-09-08T00:19:56,392   ./base/sbml/UnitDefinition.cpp:1798:48: note: ‘sid’ declared here
2025-09-08T00:19:56,392    1798 | ListOfUnitDefinitions::get (const std::string& sid) const
2025-09-08T00:19:56,392         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:56,396   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T00:19:56,396   ./base/sbml/UnitDefinition.cpp:1844:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:19:56,396    1844 |   if (&(sid) != NULL)
2025-09-08T00:19:56,396         |              ^
2025-09-08T00:19:56,396   ./base/sbml/UnitDefinition.cpp:1839:51: note: ‘sid’ declared here
2025-09-08T00:19:56,397    1839 | ListOfUnitDefinitions::remove (const std::string& sid)
2025-09-08T00:19:56,397         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:19:56,401   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2025-09-08T00:19:56,401   ./base/sbml/UnitDefinition.cpp:1922:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:56,401    1922 |   catch (SBMLConstructorException)
2025-09-08T00:19:56,401         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:56,402   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T00:19:56,402   ./base/sbml/UnitDefinition.cpp:1938:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T00:19:56,402    1938 |   catch (SBMLConstructorException)
2025-09-08T00:19:56,402         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:19:56,948   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T00:19:56,948   ./base/sbml/UnitDefinition.cpp:1802:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:56,948    1802 |   if (&(sid) == NULL)
2025-09-08T00:19:56,948         |   ^~
2025-09-08T00:19:56,951   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T00:19:56,951   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:56,951     123 |   if (&rhs == NULL)
2025-09-08T00:19:56,951         |   ^~
2025-09-08T00:19:56,954   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T00:19:56,954   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:56,954     262 |   if (&(sid) == NULL)
2025-09-08T00:19:56,954         |   ^~
2025-09-08T00:19:56,954   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T00:19:56,954   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:56,954     287 |   if (&(name) == NULL)
2025-09-08T00:19:56,954         |   ^~
2025-09-08T00:19:56,963   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T00:19:56,964   ./base/sbml/UnitDefinition.cpp:1844:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:56,964    1844 |   if (&(sid) != NULL)
2025-09-08T00:19:56,964         |   ^~
2025-09-08T00:19:56,966   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T00:19:56,966   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:19:56,966     104 |   if (&orig == NULL)
2025-09-08T00:19:56,966         |   ^~
2025-09-08T00:20:03,427   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T00:20:03,428   ./base/sbml/annotation/CVTerm.cpp:130:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:20:03,428     130 |   if (&orig == NULL)
2025-09-08T00:20:03,428         |             ^
2025-09-08T00:20:03,428   ./base/sbml/annotation/CVTerm.cpp:128:30: note: ‘orig’ declared here
2025-09-08T00:20:03,428     128 | CVTerm::CVTerm(const CVTerm& orig)
2025-09-08T00:20:03,428         |                ~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:03,429   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T00:20:03,429   ./base/sbml/annotation/CVTerm.cpp:150:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:20:03,429     150 |   if (&rhs == NULL)
2025-09-08T00:20:03,429         |            ^
2025-09-08T00:20:03,430   ./base/sbml/annotation/CVTerm.cpp:148:33: note: ‘rhs’ declared here
2025-09-08T00:20:03,430     148 | CVTerm::operator=(const CVTerm& rhs)
2025-09-08T00:20:03,430         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T00:20:03,433   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T00:20:03,433   ./base/sbml/annotation/CVTerm.cpp:256:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T00:20:03,433     256 |   if (&qualifier == NULL)
2025-09-08T00:20:03,433         |                  ^
2025-09-08T00:20:03,433   ./base/sbml/annotation/CVTerm.cpp:253:50: note: ‘qualifier’ declared here
2025-09-08T00:20:03,433     253 | CVTerm::setModelQualifierType(const std::string& qualifier)
2025-09-08T00:20:03,433         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:20:03,434   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T00:20:03,434   ./base/sbml/annotation/CVTerm.cpp:273:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T00:20:03,434     273 |   if (&qualifier == NULL)
2025-09-08T00:20:03,434         |                  ^
2025-09-08T00:20:03,434   ./base/sbml/annotation/CVTerm.cpp:270:55: note: ‘qualifier’ declared here
2025-09-08T00:20:03,434     270 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2025-09-08T00:20:03,434         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:20:03,435   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T00:20:03,435   ./base/sbml/annotation/CVTerm.cpp:355:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2025-09-08T00:20:03,435     355 |   if (&resource == NULL || resource.empty())
2025-09-08T00:20:03,435         |                 ^
2025-09-08T00:20:03,435   ./base/sbml/annotation/CVTerm.cpp:353:40: note: ‘resource’ declared here
2025-09-08T00:20:03,436     353 | CVTerm::addResource(const std::string& resource)
2025-09-08T00:20:03,436         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:20:03,791   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T00:20:03,791   ./base/sbml/annotation/CVTerm.cpp:256:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:03,791     256 |   if (&qualifier == NULL)
2025-09-08T00:20:03,791         |   ^~
2025-09-08T00:20:03,791   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T00:20:03,791   ./base/sbml/annotation/CVTerm.cpp:273:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:03,791     273 |   if (&qualifier == NULL)
2025-09-08T00:20:03,792         |   ^~
2025-09-08T00:20:03,794   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T00:20:03,794   ./base/sbml/annotation/CVTerm.cpp:130:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:03,794     130 |   if (&orig == NULL)
2025-09-08T00:20:03,795         |   ^~
2025-09-08T00:20:03,795   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T00:20:03,795   ./base/sbml/annotation/CVTerm.cpp:150:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:03,795     150 |   if (&rhs == NULL)
2025-09-08T00:20:03,795         |   ^~
2025-09-08T00:20:03,795   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T00:20:03,795   ./base/sbml/annotation/CVTerm.cpp:355:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:03,795     355 |   if (&resource == NULL || resource.empty())
2025-09-08T00:20:03,796         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:06,481   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T00:20:06,481   ./base/sbml/annotation/Date.cpp:75:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T00:20:06,481      75 |   if (&(date) == NULL)
2025-09-08T00:20:06,482         |               ^
2025-09-08T00:20:06,482   ./base/sbml/annotation/Date.cpp:72:32: note: ‘date’ declared here
2025-09-08T00:20:06,482      72 | Date::Date (const std::string& date) :
2025-09-08T00:20:06,482         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:06,482   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T00:20:06,483   ./base/sbml/annotation/Date.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:20:06,483      91 |   if (&orig == NULL)
2025-09-08T00:20:06,483         |             ^
2025-09-08T00:20:06,483   ./base/sbml/annotation/Date.cpp:89:24: note: ‘orig’ declared here
2025-09-08T00:20:06,483      89 | Date::Date(const Date& orig)
2025-09-08T00:20:06,483         |            ~~~~~~~~~~~~^~~~
2025-09-08T00:20:06,484   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T00:20:06,485   ./base/sbml/annotation/Date.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:20:06,485     119 |   if (&rhs == NULL)
2025-09-08T00:20:06,485         |            ^
2025-09-08T00:20:06,485   ./base/sbml/annotation/Date.cpp:117:35: note: ‘rhs’ declared here
2025-09-08T00:20:06,485     117 | Date& Date::operator=(const Date& rhs)
2025-09-08T00:20:06,485         |                       ~~~~~~~~~~~~^~~
2025-09-08T00:20:06,490   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T00:20:06,490   ./base/sbml/annotation/Date.cpp:389:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T00:20:06,490     389 |   if (&(date) == NULL)
2025-09-08T00:20:06,490         |               ^
2025-09-08T00:20:06,490   ./base/sbml/annotation/Date.cpp:383:43: note: ‘date’ declared here
2025-09-08T00:20:06,490     383 | Date::setDateAsString (const std::string& date)
2025-09-08T00:20:06,490         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:06,852   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T00:20:06,853   ./base/sbml/annotation/Date.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:06,853      91 |   if (&orig == NULL)
2025-09-08T00:20:06,853         |   ^~
2025-09-08T00:20:06,853   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T00:20:06,853   ./base/sbml/annotation/Date.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:06,853     119 |   if (&rhs == NULL)
2025-09-08T00:20:06,853         |   ^~
2025-09-08T00:20:06,854   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T00:20:06,855   ./base/sbml/annotation/Date.cpp:75:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:06,855      75 |   if (&(date) == NULL)
2025-09-08T00:20:06,855         |   ^~
2025-09-08T00:20:06,857   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T00:20:06,857   ./base/sbml/annotation/Date.cpp:389:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:06,857     389 |   if (&(date) == NULL)
2025-09-08T00:20:06,857         |   ^~
2025-09-08T00:20:07,037   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2025-09-08T00:20:07,037   ./base/sbml/annotation/Date.cpp:443:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:20:07,038     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T00:20:07,038         |                        ^~
2025-09-08T00:20:07,038   ./base/sbml/annotation/Date.cpp:443:20: note: directive argument in the range [10, 4294967295]
2025-09-08T00:20:07,038     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T00:20:07,038         |                    ^~~~~~~~
2025-09-08T00:20:07,038   ./base/sbml/annotation/Date.cpp:443:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2025-09-08T00:20:07,038     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T00:20:07,038         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:07,038   ./base/sbml/annotation/Date.cpp:449:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:20:07,039     449 |     sprintf(cdate, "%uT", mDay);
2025-09-08T00:20:07,039         |                       ^
2025-09-08T00:20:07,039   ./base/sbml/annotation/Date.cpp:449:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T00:20:07,039     449 |     sprintf(cdate, "%uT", mDay);
2025-09-08T00:20:07,039         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:07,039   ./base/sbml/annotation/Date.cpp:455:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:20:07,039     455 |     sprintf(cdate, "%u:", mHour);
2025-09-08T00:20:07,039         |                       ^
2025-09-08T00:20:07,039   ./base/sbml/annotation/Date.cpp:455:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T00:20:07,039     455 |     sprintf(cdate, "%u:", mHour);
2025-09-08T00:20:07,040         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:07,040   ./base/sbml/annotation/Date.cpp:461:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:20:07,040     461 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T00:20:07,040         |                       ^
2025-09-08T00:20:07,040   ./base/sbml/annotation/Date.cpp:461:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T00:20:07,040     461 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T00:20:07,040         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:07,040   ./base/sbml/annotation/Date.cpp:467:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T00:20:07,040     467 |     sprintf(cdate, "%u", mSecond);
2025-09-08T00:20:07,040         |                       ^
2025-09-08T00:20:07,041   ./base/sbml/annotation/Date.cpp:467:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T00:20:07,041     467 |     sprintf(cdate, "%u", mSecond);
2025-09-08T00:20:07,041         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:07,041   ./base/sbml/annotation/Date.cpp:486:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T00:20:07,041     486 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T00:20:07,041         |                         ^
2025-09-08T00:20:07,041   ./base/sbml/annotation/Date.cpp:486:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T00:20:07,041     486 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T00:20:07,041         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:07,041   ./base/sbml/annotation/Date.cpp:492:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T00:20:07,042     492 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T00:20:07,042         |                         ^
2025-09-08T00:20:07,042   ./base/sbml/annotation/Date.cpp:492:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T00:20:07,042     492 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T00:20:07,042         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:20:09,573   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T00:20:09,573   ./base/sbml/annotation/ModelCreator.cpp:132:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:20:09,573     132 |   if (&orig == NULL)
2025-09-08T00:20:09,573         |             ^
2025-09-08T00:20:09,573   ./base/sbml/annotation/ModelCreator.cpp:130:48: note: ‘orig’ declared here
2025-09-08T00:20:09,574     130 | ModelCreator::ModelCreator(const ModelCreator& orig)
2025-09-08T00:20:09,574         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:09,575   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T00:20:09,575   ./base/sbml/annotation/ModelCreator.cpp:159:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:20:09,575     159 |   if (&rhs == NULL)
2025-09-08T00:20:09,575         |            ^
2025-09-08T00:20:09,575   ./base/sbml/annotation/ModelCreator.cpp:157:59: note: ‘rhs’ declared here
2025-09-08T00:20:09,575     157 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2025-09-08T00:20:09,576         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:20:09,577   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T00:20:09,578   ./base/sbml/annotation/ModelCreator.cpp:233:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:20:09,578     233 |   if (&(name) == NULL)
2025-09-08T00:20:09,578         |               ^
2025-09-08T00:20:09,578   ./base/sbml/annotation/ModelCreator.cpp:231:48: note: ‘name’ declared here
2025-09-08T00:20:09,578     231 | ModelCreator::setFamilyName(const std::string& name)
2025-09-08T00:20:09,578         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:09,578   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T00:20:09,578   ./base/sbml/annotation/ModelCreator.cpp:252:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:20:09,579     252 |   if (&(name) == NULL)
2025-09-08T00:20:09,579         |               ^
2025-09-08T00:20:09,579   ./base/sbml/annotation/ModelCreator.cpp:250:47: note: ‘name’ declared here
2025-09-08T00:20:09,579     250 | ModelCreator::setGivenName(const std::string& name)
2025-09-08T00:20:09,579         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:09,579   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T00:20:09,579   ./base/sbml/annotation/ModelCreator.cpp:271:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2025-09-08T00:20:09,579     271 |   if (&(email) == NULL)
2025-09-08T00:20:09,579         |                ^
2025-09-08T00:20:09,579   ./base/sbml/annotation/ModelCreator.cpp:269:43: note: ‘email’ declared here
2025-09-08T00:20:09,580     269 | ModelCreator::setEmail(const std::string& email)
2025-09-08T00:20:09,580         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:20:09,580   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T00:20:09,580   ./base/sbml/annotation/ModelCreator.cpp:287:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2025-09-08T00:20:09,580     287 |   if (&(organization) == NULL)
2025-09-08T00:20:09,580         |                       ^
2025-09-08T00:20:09,580   ./base/sbml/annotation/ModelCreator.cpp:285:50: note: ‘organization’ declared here
2025-09-08T00:20:09,580     285 | ModelCreator::setOrganization(const std::string& organization)
2025-09-08T00:20:09,580         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T00:20:09,937   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T00:20:09,937   ./base/sbml/annotation/ModelCreator.cpp:233:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:09,937     233 |   if (&(name) == NULL)
2025-09-08T00:20:09,937         |   ^~
2025-09-08T00:20:09,937   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T00:20:09,937   ./base/sbml/annotation/ModelCreator.cpp:252:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:09,938     252 |   if (&(name) == NULL)
2025-09-08T00:20:09,938         |   ^~
2025-09-08T00:20:09,938   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T00:20:09,938   ./base/sbml/annotation/ModelCreator.cpp:271:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:09,938     271 |   if (&(email) == NULL)
2025-09-08T00:20:09,938         |   ^~
2025-09-08T00:20:09,938   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T00:20:09,938   ./base/sbml/annotation/ModelCreator.cpp:287:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:09,938     287 |   if (&(organization) == NULL)
2025-09-08T00:20:09,938         |   ^~
2025-09-08T00:20:09,944   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T00:20:09,944   ./base/sbml/annotation/ModelCreator.cpp:132:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:09,944     132 |   if (&orig == NULL)
2025-09-08T00:20:09,944         |   ^~
2025-09-08T00:20:09,944   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T00:20:09,944   ./base/sbml/annotation/ModelCreator.cpp:159:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:09,944     159 |   if (&rhs == NULL)
2025-09-08T00:20:09,945         |   ^~
2025-09-08T00:20:12,783   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T00:20:12,784   ./base/sbml/annotation/ModelHistory.cpp:87:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:20:12,784      87 |   if (&orig == NULL)
2025-09-08T00:20:12,784         |             ^
2025-09-08T00:20:12,784   ./base/sbml/annotation/ModelHistory.cpp:85:48: note: ‘orig’ declared here
2025-09-08T00:20:12,784      85 | ModelHistory::ModelHistory(const ModelHistory& orig)
2025-09-08T00:20:12,784         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:12,786   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T00:20:12,786   ./base/sbml/annotation/ModelHistory.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:20:12,786     123 |   if (&rhs == NULL)
2025-09-08T00:20:12,786         |            ^
2025-09-08T00:20:12,786   ./base/sbml/annotation/ModelHistory.cpp:121:45: note: ‘rhs’ declared here
2025-09-08T00:20:12,787     121 | ModelHistory::operator=(const ModelHistory& rhs)
2025-09-08T00:20:12,787         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:20:13,138   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T00:20:13,138   ./base/sbml/annotation/ModelHistory.cpp:87:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:13,138      87 |   if (&orig == NULL)
2025-09-08T00:20:13,138         |   ^~
2025-09-08T00:20:13,138   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T00:20:13,139   ./base/sbml/annotation/ModelHistory.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:13,139     123 |   if (&rhs == NULL)
2025-09-08T00:20:13,139         |   ^~
2025-09-08T00:20:16,267   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:20:16,267                    from ./base//sbml/Model.h:446,
2025-09-08T00:20:16,267                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2025-09-08T00:20:16,268   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:16,268      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:16,268         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:16,268   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:16,268                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:20:16,268                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:20:16,268                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:29:
2025-09-08T00:20:16,268   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:16,268     117 |     struct unary_function
2025-09-08T00:20:16,268         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:16,531   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T00:20:16,532   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:20:16,532      67 |   if (&element == NULL || stream == NULL) return;
2025-09-08T00:20:16,532         |                ^
2025-09-08T00:20:16,532   ./base/sbml/annotation/RDFAnnotationParser.cpp:64:51: note: ‘element’ declared here
2025-09-08T00:20:16,532      64 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T00:20:16,532         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:20:17,041   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:17,042      67 |   if (&element == NULL || stream == NULL) return;
2025-09-08T00:20:17,042         |                ^
2025-09-08T00:20:38,458   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T00:20:38,458   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:20:38,458     110 |   if (&orig == NULL)
2025-09-08T00:20:38,459         |             ^
2025-09-08T00:20:38,459   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2025-09-08T00:20:38,459     108 |   (const ConversionOption& orig)
2025-09-08T00:20:38,459         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:38,460   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T00:20:38,460   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:20:38,460     128 |   if (&rhs == NULL)
2025-09-08T00:20:38,460         |            ^
2025-09-08T00:20:38,460   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2025-09-08T00:20:38,460     126 | ConversionOption::operator=(const ConversionOption& rhs)
2025-09-08T00:20:38,461         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:20:38,852   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T00:20:38,852   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:38,852     110 |   if (&orig == NULL)
2025-09-08T00:20:38,852         |   ^~
2025-09-08T00:20:38,852   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T00:20:38,852   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:38,853     128 |   if (&rhs == NULL)
2025-09-08T00:20:38,853         |   ^~
2025-09-08T00:20:42,936   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T00:20:42,936   ./base/sbml/conversion/ConversionProperties.cpp:56:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:20:42,936      56 |   if (&orig == NULL)
2025-09-08T00:20:42,936         |             ^
2025-09-08T00:20:42,936   ./base/sbml/conversion/ConversionProperties.cpp:53:72: note: ‘orig’ declared here
2025-09-08T00:20:42,936      53 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2025-09-08T00:20:42,936         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:42,975   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T00:20:42,975   ./base/sbml/conversion/ConversionProperties.cpp:79:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:20:42,975      79 |   if (&rhs == NULL)
2025-09-08T00:20:42,975         |            ^
2025-09-08T00:20:42,975   ./base/sbml/conversion/ConversionProperties.cpp:77:61: note: ‘rhs’ declared here
2025-09-08T00:20:42,976      77 | ConversionProperties::operator=(const ConversionProperties& rhs)
2025-09-08T00:20:42,976         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:20:42,988   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T00:20:42,988   ./base/sbml/conversion/ConversionProperties.cpp:231:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2025-09-08T00:20:42,988     231 |   if (&option == NULL) return;
2025-09-08T00:20:42,988         |               ^
2025-09-08T00:20:42,988   ./base/sbml/conversion/ConversionProperties.cpp:229:57: note: ‘option’ declared here
2025-09-08T00:20:42,988     229 | ConversionProperties::addOption(const ConversionOption &option)
2025-09-08T00:20:42,989         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:20:43,486   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T00:20:43,486   ./base/sbml/conversion/ConversionProperties.cpp:56:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:43,486      56 |   if (&orig == NULL)
2025-09-08T00:20:43,486         |   ^~
2025-09-08T00:20:43,487   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T00:20:43,487   ./base/sbml/conversion/ConversionProperties.cpp:79:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:43,487      79 |   if (&rhs == NULL)
2025-09-08T00:20:43,487         |   ^~
2025-09-08T00:20:43,488   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T00:20:43,488   ./base/sbml/conversion/ConversionProperties.cpp:231:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:43,488     231 |   if (&option == NULL) return;
2025-09-08T00:20:43,488         |   ^~
2025-09-08T00:20:48,883   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:20:48,883                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:20:48,883                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:20:48,883                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:20:48,883                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:20:48,884                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2025-09-08T00:20:48,884                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2025-09-08T00:20:48,884   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:48,884      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:48,884         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:48,884   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:48,884                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:20:48,884                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:20:48,884                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2025-09-08T00:20:48,885   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:48,885     117 |     struct unary_function
2025-09-08T00:20:48,885         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:52,532   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:20:52,532                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:20:52,532                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:20:52,532                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:20:52,532                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:20:52,532                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2025-09-08T00:20:52,533   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:52,533      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:52,533         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:52,533   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:20:52,533                    from ./base//sbml/conversion/SBMLConverter.h:52:
2025-09-08T00:20:52,533   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:52,533     117 |     struct unary_function
2025-09-08T00:20:52,533         |            ^~~~~~~~~~~~~~
2025-09-08T00:20:52,760   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T00:20:52,760   ./base/sbml/conversion/SBMLConverter.cpp:67:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:20:52,761      67 |   if (&orig == NULL)
2025-09-08T00:20:52,761         |             ^
2025-09-08T00:20:52,761   ./base/sbml/conversion/SBMLConverter.cpp:62:51: note: ‘orig’ declared here
2025-09-08T00:20:52,761      62 | SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2025-09-08T00:20:52,761         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:20:52,763   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T00:20:52,763   ./base/sbml/conversion/SBMLConverter.cpp:103:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:20:52,763     103 |   if (&rhs == NULL)
2025-09-08T00:20:52,763         |            ^
2025-09-08T00:20:52,763   ./base/sbml/conversion/SBMLConverter.cpp:101:47: note: ‘rhs’ declared here
2025-09-08T00:20:52,763     101 | SBMLConverter::operator=(const SBMLConverter& rhs)
2025-09-08T00:20:52,764         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:20:53,196   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T00:20:53,196   ./base/sbml/conversion/SBMLConverter.cpp:67:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:53,196      67 |   if (&orig == NULL)
2025-09-08T00:20:53,196         |   ^~
2025-09-08T00:20:53,196   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T00:20:53,196   ./base/sbml/conversion/SBMLConverter.cpp:103:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:20:53,197     103 |   if (&rhs == NULL)
2025-09-08T00:20:53,197         |   ^~
2025-09-08T00:20:56,422   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:20:56,422                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:20:56,422                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:20:56,422                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:20:56,422                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:20:56,422                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2025-09-08T00:20:56,422                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2025-09-08T00:20:56,423   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:20:56,423      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:20:56,423         |                           ^~~~~~~~~~~~~~
2025-09-08T00:20:56,423   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T00:20:56,423                    from /usr/include/c++/14/vector:68,
2025-09-08T00:20:56,423                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2025-09-08T00:20:56,423   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:20:56,423     117 |     struct unary_function
2025-09-08T00:20:56,423         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:00,333   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:00,334                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:00,334                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:00,334                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:00,334                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:00,334                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2025-09-08T00:21:00,334                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2025-09-08T00:21:00,334   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:00,334      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:00,334         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:00,334   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:00,335                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:00,335                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:00,335                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2025-09-08T00:21:00,335   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:00,335     117 |     struct unary_function
2025-09-08T00:21:00,335         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:00,576   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:00,576   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:00,576     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T00:21:00,576         |              ^
2025-09-08T00:21:00,577   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:110:80: note: ‘props’ declared here
2025-09-08T00:21:00,577     110 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:00,577         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:00,582   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2025-09-08T00:21:00,582   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:216:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2025-09-08T00:21:00,583     216 |           ->isSetMath(), &idsToSkip)
2025-09-08T00:21:00,583         |                          ^~~~~~~~~~
2025-09-08T00:21:00,583   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:153:10: note: ‘idsToSkip’ declared here
2025-09-08T00:21:00,583     153 |   IdList idsToSkip;
2025-09-08T00:21:00,583         |          ^~~~~~~~~
2025-09-08T00:21:01,019   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:01,020   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:01,020     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T00:21:01,020         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:04,743   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:04,743                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:04,743                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:04,743                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:04,743                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:04,743                    from ./base//sbml/conversion/SBMLIdConverter.h:78,
2025-09-08T00:21:04,743                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2025-09-08T00:21:04,744   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:04,744      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:04,744         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:04,744   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:04,744                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:04,744                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:04,744                    from ./base//sbml/conversion/SBMLIdConverter.h:77:
2025-09-08T00:21:04,744   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:04,744     117 |     struct unary_function
2025-09-08T00:21:04,744         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:04,983   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:04,983   ./base/sbml/conversion/SBMLIdConverter.cpp:115:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:04,984     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T00:21:04,984         |              ^
2025-09-08T00:21:04,984   ./base/sbml/conversion/SBMLIdConverter.cpp:113:64: note: ‘props’ declared here
2025-09-08T00:21:04,984     113 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:04,984         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:05,545   ./base/sbml/conversion/SBMLIdConverter.cpp:115:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:05,545     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T00:21:05,545         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:10,144   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:10,144                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:10,144                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:10,145                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:10,145                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:10,145                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:56,
2025-09-08T00:21:10,145                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2025-09-08T00:21:10,145   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:10,145      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:10,145         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:10,145   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:10,145                    from ./base//sbml/conversion/SBMLConverter.h:52:
2025-09-08T00:21:10,145   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:10,146     117 |     struct unary_function
2025-09-08T00:21:10,146         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:10,381   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T00:21:10,381   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:21:10,382      91 |   if (&rhs == NULL)
2025-09-08T00:21:10,382         |            ^
2025-09-08T00:21:10,382   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2025-09-08T00:21:10,382      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2025-09-08T00:21:10,382         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:21:10,384   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:10,384   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:10,385     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T00:21:10,385         |              ^
2025-09-08T00:21:10,385   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:132:72: note: ‘props’ declared here
2025-09-08T00:21:10,385     132 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:10,385         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:10,820   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T00:21:10,821   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:10,821      91 |   if (&rhs == NULL)
2025-09-08T00:21:10,821         |   ^~
2025-09-08T00:21:10,821   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:10,821   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:10,821     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T00:21:10,821         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:14,478   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:14,478                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:14,478                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:14,479                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:14,479                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:14,479                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:89,
2025-09-08T00:21:14,479                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2025-09-08T00:21:14,479   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:14,479      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:14,479         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:14,479   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:14,479                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:14,479                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:14,480                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:88:
2025-09-08T00:21:14,480   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:14,480     117 |     struct unary_function
2025-09-08T00:21:14,480         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:14,725   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:14,725   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:14,725     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T00:21:14,726         |              ^
2025-09-08T00:21:14,726   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:107:79: note: ‘props’ declared here
2025-09-08T00:21:14,726     107 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:14,726         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:15,142   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:15,142     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T00:21:15,142         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:18,317   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:18,317                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:18,317                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:18,317                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:18,317                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:18,317                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:73,
2025-09-08T00:21:18,317                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2025-09-08T00:21:18,317   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:18,317      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:18,318         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:18,318   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:18,318                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:18,318                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:18,318                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:72:
2025-09-08T00:21:18,318   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:18,318     117 |     struct unary_function
2025-09-08T00:21:18,318         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:18,628   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T00:21:18,628   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:21:18,628      89 |   if (&rhs == NULL)
2025-09-08T00:21:18,629         |            ^
2025-09-08T00:21:18,629   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2025-09-08T00:21:18,629      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2025-09-08T00:21:18,629         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:21:18,632   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:18,632   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:18,632     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T00:21:18,632         |              ^
2025-09-08T00:21:18,632   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:135:74: note: ‘props’ declared here
2025-09-08T00:21:18,633     135 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:18,633         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:19,131   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T00:21:19,131   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:19,131      89 |   if (&rhs == NULL)
2025-09-08T00:21:19,131         |   ^~
2025-09-08T00:21:19,131   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:19,131   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:19,132     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T00:21:19,132         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:24,058   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:24,058                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:24,058                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:24,058                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:24,059                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:24,059                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:65,
2025-09-08T00:21:24,059                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2025-09-08T00:21:24,059   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:24,059      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:24,059         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:24,059   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:24,059                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:24,059                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:24,060                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:64:
2025-09-08T00:21:24,060   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:24,060     117 |     struct unary_function
2025-09-08T00:21:24,060         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:24,306   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:24,306   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:24,306     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T00:21:24,306         |              ^
2025-09-08T00:21:24,307   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:114:76: note: ‘props’ declared here
2025-09-08T00:21:24,307     114 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:24,307         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:24,762   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:24,762     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T00:21:24,762         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:28,369   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:28,369                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:28,369                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:28,369                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:28,369                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:28,369                    from ./base//sbml/conversion/SBMLReactionConverter.h:59,
2025-09-08T00:21:28,369                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2025-09-08T00:21:28,369   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:28,370      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:28,370         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:28,370   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:28,370                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:28,370                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:28,370                    from ./base//sbml/conversion/SBMLReactionConverter.h:58:
2025-09-08T00:21:28,370   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:28,370     117 |     struct unary_function
2025-09-08T00:21:28,370         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:28,629   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:28,629   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:28,630     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T00:21:28,630         |              ^
2025-09-08T00:21:28,630   ./base/sbml/conversion/SBMLReactionConverter.cpp:116:70: note: ‘props’ declared here
2025-09-08T00:21:28,630     116 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:28,630         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:29,141   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:29,141     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T00:21:29,141         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:33,848   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:33,848                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:33,848                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:33,849                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:33,849                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:33,849                    from ./base//sbml/conversion/SBMLRuleConverter.h:88,
2025-09-08T00:21:33,849                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2025-09-08T00:21:33,849   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:33,849      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:33,849         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:33,849   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:33,849                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:33,850                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:33,850                    from ./base//sbml/conversion/SBMLRuleConverter.h:87:
2025-09-08T00:21:33,850   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:33,850     117 |     struct unary_function
2025-09-08T00:21:33,850         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:34,086   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:34,087   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:34,087     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T00:21:34,087         |              ^
2025-09-08T00:21:34,087   ./base/sbml/conversion/SBMLRuleConverter.cpp:111:68: note: ‘props’ declared here
2025-09-08T00:21:34,087     111 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:34,087         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:34,957   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:34,958     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T00:21:34,958         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:42,825   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:42,826                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:42,826                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:42,826                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:42,826                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:42,826                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:61,
2025-09-08T00:21:42,826                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2025-09-08T00:21:42,826   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:42,826      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:42,827         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:42,827   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:42,827                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:42,827                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:42,827                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:60:
2025-09-08T00:21:42,827   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:42,827     117 |     struct unary_function
2025-09-08T00:21:42,827         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:43,089   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T00:21:43,089   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:21:43,089      86 |   if (&rhs == NULL)
2025-09-08T00:21:43,090         |            ^
2025-09-08T00:21:43,090   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2025-09-08T00:21:43,090      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2025-09-08T00:21:43,090         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:21:43,092   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:43,093   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:131:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:43,093     131 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T00:21:43,093         |              ^
2025-09-08T00:21:43,093   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:129:74: note: ‘props’ declared here
2025-09-08T00:21:43,093     129 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:43,093         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:43,507   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T00:21:43,508   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:43,508      86 |   if (&rhs == NULL)
2025-09-08T00:21:43,508         |   ^~
2025-09-08T00:21:43,508   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:43,508   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:131:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:43,508     131 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T00:21:43,508         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:46,866   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:46,866                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:46,866                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:46,866                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:21:46,866                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:21:46,867                    from ./base//sbml/conversion/SBMLUnitsConverter.h:71,
2025-09-08T00:21:46,867                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2025-09-08T00:21:46,867   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:46,867      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:46,867         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:46,867   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:46,867                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:46,867                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:46,867                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70:
2025-09-08T00:21:46,867   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:46,868     117 |     struct unary_function
2025-09-08T00:21:46,868         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:47,151   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T00:21:47,151   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:21:47,151      91 |   if (&rhs == NULL)
2025-09-08T00:21:47,151         |            ^
2025-09-08T00:21:47,151   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2025-09-08T00:21:47,151      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2025-09-08T00:21:47,151         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:21:47,154   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:47,154   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:21:47,154     136 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T00:21:47,155         |              ^
2025-09-08T00:21:47,155   ./base/sbml/conversion/SBMLUnitsConverter.cpp:134:67: note: ‘props’ declared here
2025-09-08T00:21:47,155     134 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:21:47,155         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:21:47,834   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T00:21:47,834   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:47,834      91 |   if (&rhs == NULL)
2025-09-08T00:21:47,834         |   ^~
2025-09-08T00:21:47,834   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:21:47,834   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:21:47,834     136 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T00:21:47,835         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:21:54,928   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:54,929                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:54,929                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:54,929                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:21:54,929                    from ./base/sbml/extension/ASTBasePlugin.cpp:40:
2025-09-08T00:21:54,929   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:54,929      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:54,929         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:54,929   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:54,929                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:21:54,930                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:21:54,930                    from ./base//sbml/extension/ASTBasePlugin.h:50:
2025-09-08T00:21:54,930   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:54,930     117 |     struct unary_function
2025-09-08T00:21:54,930         |            ^~~~~~~~~~~~~~
2025-09-08T00:21:59,216   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:21:59,217                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:21:59,217                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:21:59,217                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:21:59,217                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:21:59,217                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:21:59,217                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2025-09-08T00:21:59,217   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:21:59,217      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:21:59,218         |                           ^~~~~~~~~~~~~~
2025-09-08T00:21:59,218   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:21:59,218                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:21:59,218                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:21:59,218                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:43,
2025-09-08T00:21:59,218                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2025-09-08T00:21:59,218   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:21:59,218     117 |     struct unary_function
2025-09-08T00:21:59,218         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:02,885   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:22:02,885                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:22:02,885                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:22:02,885                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2025-09-08T00:22:02,885                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2025-09-08T00:22:02,885   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:02,885      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:02,885         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:02,886   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:02,886                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:22:02,886                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:22:02,886                    from ./base//sbml/extension/SBMLDocumentPlugin.h:51:
2025-09-08T00:22:02,886   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:02,886     117 |     struct unary_function
2025-09-08T00:22:02,886         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:03,131   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T00:22:03,132   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:22:03,132     119 |   if (&attributes == NULL) return;
2025-09-08T00:22:03,132         |                   ^
2025-09-08T00:22:03,132   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2025-09-08T00:22:03,132     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2025-09-08T00:22:03,132         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:22:03,132   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:22:03,133   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:22:03,133     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:03,133         |                   ^
2025-09-08T00:22:03,133   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2025-09-08T00:22:03,133     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T00:22:03,133         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:22:03,133   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T00:22:03,133     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:03,133         |                                                  ^
2025-09-08T00:22:03,134   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2025-09-08T00:22:03,134     133 |                                     const ExpectedAttributes& expectedAttributes)
2025-09-08T00:22:03,134         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:22:03,135   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2025-09-08T00:22:03,135   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:03,136     169 |   if (&stream == NULL) return;
2025-09-08T00:22:03,136         |               ^
2025-09-08T00:22:03,136   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2025-09-08T00:22:03,136     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2025-09-08T00:22:03,136         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:03,565   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:03,565     169 |   if (&stream == NULL) return;
2025-09-08T00:22:03,565         |   ^~
2025-09-08T00:22:03,568   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T00:22:03,569   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:03,569     119 |   if (&attributes == NULL) return;
2025-09-08T00:22:03,569         |   ^~
2025-09-08T00:22:03,569   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:22:03,569   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:03,569     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:03,569         |                   ^
2025-09-08T00:22:03,569   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:03,570     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:03,570         |                                                  ^
2025-09-08T00:22:07,116   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:22:07,116                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:22:07,116                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:22:07,117                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2025-09-08T00:22:07,117                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:52,
2025-09-08T00:22:07,117                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2025-09-08T00:22:07,117   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:07,117      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:07,117         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:07,117   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:07,117                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:22:07,117                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:22:07,118                    from ./base//sbml/extension/SBMLDocumentPlugin.h:51:
2025-09-08T00:22:07,118   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:07,118     117 |     struct unary_function
2025-09-08T00:22:07,118         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:07,363   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:22:07,363   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:22:07,363      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:07,363         |                   ^
2025-09-08T00:22:07,363   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2025-09-08T00:22:07,363      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2025-09-08T00:22:07,363         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:22:07,363   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T00:22:07,364      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:07,364         |                                                  ^
2025-09-08T00:22:07,364   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2025-09-08T00:22:07,364      89 |                                           const ExpectedAttributes& expectedAttributes)
2025-09-08T00:22:07,364         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:22:07,774   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:07,774      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:07,774         |                   ^
2025-09-08T00:22:07,774   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:07,774      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:07,774         |                                                  ^
2025-09-08T00:22:10,811   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:22:10,812                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:22:10,812                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:22:10,812                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:22:10,812                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:22:10,812                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2025-09-08T00:22:10,812   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:10,812      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:10,813         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:10,813   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:10,813                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:22:10,813                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:22:10,813                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T00:22:10,813   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:10,813     117 |     struct unary_function
2025-09-08T00:22:10,813         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:11,110   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T00:22:11,110   ./base/sbml/extension/SBMLExtension.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T00:22:11,110     245 |   if (&extPoint == NULL) return NULL;
2025-09-08T00:22:11,110         |                 ^
2025-09-08T00:22:11,111   ./base/sbml/extension/SBMLExtension.cpp:243:65: note: ‘extPoint’ declared here
2025-09-08T00:22:11,111     243 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2025-09-08T00:22:11,111         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:22:11,114   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T00:22:11,114   ./base/sbml/extension/SBMLExtension.cpp:316:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:22:11,114     316 |   if(&uri == NULL) return false;
2025-09-08T00:22:11,114         |           ^
2025-09-08T00:22:11,114   ./base/sbml/extension/SBMLExtension.cpp:314:47: note: ‘uri’ declared here
2025-09-08T00:22:11,115     314 | SBMLExtension::isSupported(const std::string& uri) const
2025-09-08T00:22:11,115         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:11,635   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T00:22:11,636   ./base/sbml/extension/SBMLExtension.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:11,636     245 |   if (&extPoint == NULL) return NULL;
2025-09-08T00:22:11,636         |   ^~
2025-09-08T00:22:11,648   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T00:22:11,648   ./base/sbml/extension/SBMLExtension.cpp:316:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:11,648     316 |   if(&uri == NULL) return false;
2025-09-08T00:22:11,648         |   ^~
2025-09-08T00:22:17,820   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:22:17,821                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:22:17,821                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:22:17,821                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:22:17,821                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:22:17,821                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:22:17,821                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2025-09-08T00:22:17,821   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:17,821      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:17,821         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:17,822   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:17,822                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:22:17,822                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:22:17,822                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2025-09-08T00:22:17,822   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:17,822     117 |     struct unary_function
2025-09-08T00:22:17,822         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:21,494   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:22:21,495                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:22:21,495                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:22:21,495                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:22:21,495                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:22:21,495                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:22:21,495                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2025-09-08T00:22:21,495   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:21,495      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:21,495         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:21,496   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:21,496                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:22:21,496                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:22:21,496                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T00:22:21,496   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:21,496     117 |     struct unary_function
2025-09-08T00:22:21,496         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:21,803   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T00:22:21,803   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:22:21,803     103 |   if (&orig != NULL)
2025-09-08T00:22:21,803         |             ^
2025-09-08T00:22:21,803   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2025-09-08T00:22:21,803     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2025-09-08T00:22:21,804         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:22:21,886   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T00:22:21,886   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:22:21,886     221 |   if(&uri == NULL) return NULL;
2025-09-08T00:22:21,887         |           ^
2025-09-08T00:22:21,887   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2025-09-08T00:22:21,887     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2025-09-08T00:22:21,887         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:21,899   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T00:22:21,899   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T00:22:21,899     245 |   if (&extPoint != NULL)
2025-09-08T00:22:21,900         |                 ^
2025-09-08T00:22:21,900   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2025-09-08T00:22:21,900     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2025-09-08T00:22:21,900         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:22:21,903   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T00:22:21,903   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:22:21,903     272 |   if (&uri != NULL)
2025-09-08T00:22:21,903         |            ^
2025-09-08T00:22:21,903   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2025-09-08T00:22:21,903     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2025-09-08T00:22:21,903         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:21,905   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T00:22:21,905   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T00:22:21,905     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T00:22:21,905         |                ^
2025-09-08T00:22:21,905   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2025-09-08T00:22:21,905     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T00:22:21,906         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:22:21,906   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:22:21,906     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T00:22:21,906         |                                ^
2025-09-08T00:22:21,906   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2025-09-08T00:22:21,906     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T00:22:21,906         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:21,907   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T00:22:21,907   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T00:22:21,907     347 |   if (&extPoint == NULL) return 0;
2025-09-08T00:22:21,907         |                 ^
2025-09-08T00:22:21,907   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2025-09-08T00:22:21,907     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2025-09-08T00:22:21,908         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:22:21,909   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2025-09-08T00:22:21,909   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T00:22:21,909     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2025-09-08T00:22:21,909         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T00:22:21,909   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T00:22:22,645   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T00:22:22,645   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:22,646     272 |   if (&uri != NULL)
2025-09-08T00:22:22,646         |   ^~
2025-09-08T00:22:22,650   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T00:22:22,650   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:22,650     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T00:22:22,650         |                ^
2025-09-08T00:22:22,650   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:22,650     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T00:22:22,651         |                                ^
2025-09-08T00:22:22,651   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T00:22:22,651   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:22,651     245 |   if (&extPoint != NULL)
2025-09-08T00:22:22,651         |   ^~
2025-09-08T00:22:22,651   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T00:22:22,652   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:22,652     347 |   if (&extPoint == NULL) return 0;
2025-09-08T00:22:22,652         |   ^~
2025-09-08T00:22:22,659   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T00:22:22,659   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:22,659     221 |   if(&uri == NULL) return NULL;
2025-09-08T00:22:22,659         |   ^~
2025-09-08T00:22:22,663   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T00:22:22,663   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:22,663     103 |   if (&orig != NULL)
2025-09-08T00:22:22,663         |   ^~
2025-09-08T00:22:26,831   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T00:22:26,831   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T00:22:26,831      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:22:26,831         |            ^
2025-09-08T00:22:26,832   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:44: note: ‘lhs’ declared here
2025-09-08T00:22:26,832      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T00:22:26,832         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:26,832   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:22:26,832      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:22:26,832         |                            ^
2025-09-08T00:22:26,832   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:76: note: ‘rhs’ declared here
2025-09-08T00:22:26,832      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T00:22:26,832         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:26,833   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T00:22:26,833   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T00:22:26,833     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:22:26,833         |            ^
2025-09-08T00:22:26,833   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:43: note: ‘lhs’ declared here
2025-09-08T00:22:26,833     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T00:22:26,833         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:26,833   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:22:26,833     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:22:26,834         |                            ^
2025-09-08T00:22:26,834   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:75: note: ‘rhs’ declared here
2025-09-08T00:22:26,834     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T00:22:26,834         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:27,104   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T00:22:27,104   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:27,105      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:22:27,105         |            ^
2025-09-08T00:22:27,105   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:27,105      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:22:27,105         |                            ^
2025-09-08T00:22:27,105   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T00:22:27,106   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:27,106     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:22:27,106         |            ^
2025-09-08T00:22:27,106   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:27,106     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T00:22:27,106         |                            ^
2025-09-08T00:22:30,172   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:22:30,173                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:22:30,173                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:22:30,173                    from ./base//sbml/extension/SBasePlugin.h:253,
2025-09-08T00:22:30,173                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2025-09-08T00:22:30,173   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:30,173      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:30,173         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:30,173   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:30,173                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:22:30,174                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:22:30,174                    from ./base//sbml/extension/SBasePlugin.h:251:
2025-09-08T00:22:30,174   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:30,174     117 |     struct unary_function
2025-09-08T00:22:30,174         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:30,471   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:22:30,471   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:22:30,471     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:30,471         |                   ^
2025-09-08T00:22:30,472   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2025-09-08T00:22:30,472     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T00:22:30,472         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:22:30,472   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T00:22:30,472     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:30,472         |                                                  ^
2025-09-08T00:22:30,472   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2025-09-08T00:22:30,472     576 |                              const ExpectedAttributes& expectedAttributes)
2025-09-08T00:22:30,472         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:22:30,474   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T00:22:30,474   ./base/sbml/extension/SBasePlugin.cpp:683:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:22:30,474     683 |   if(&element == NULL) return;
2025-09-08T00:22:30,474         |               ^
2025-09-08T00:22:30,475   ./base/sbml/extension/SBasePlugin.cpp:678:51: note: ‘element’ declared here
2025-09-08T00:22:30,475     678 | SBasePlugin::logUnknownElement(const std::string &element,
2025-09-08T00:22:30,475         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:22:30,480   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T00:22:30,481   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:22:30,481     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:22:30,481         |                  ^
2025-09-08T00:22:30,481   ./base/sbml/extension/SBasePlugin.cpp:710:53: note: ‘attribute’ declared here
2025-09-08T00:22:30,481     710 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2025-09-08T00:22:30,481         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:22:30,481   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:22:30,481     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:22:30,482         |                                      ^
2025-09-08T00:22:30,482   ./base/sbml/extension/SBasePlugin.cpp:714:53: note: ‘element’ declared here
2025-09-08T00:22:30,482     714 |                                  const std::string& element)
2025-09-08T00:22:30,482         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:22:30,487   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T00:22:30,487   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:22:30,487     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:22:30,487         |                  ^
2025-09-08T00:22:30,488   ./base/sbml/extension/SBasePlugin.cpp:744:48: note: ‘attribute’ declared here
2025-09-08T00:22:30,488     744 | SBasePlugin::logEmptyString(const std::string &attribute,
2025-09-08T00:22:30,488         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:22:30,488   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:22:30,488     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:22:30,488         |                                      ^
2025-09-08T00:22:30,488   ./base/sbml/extension/SBasePlugin.cpp:748:56: note: ‘element’ declared here
2025-09-08T00:22:30,488     748 |                                     const std::string& element)
2025-09-08T00:22:30,488         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:22:30,952   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T00:22:30,953   ./base/sbml/extension/SBasePlugin.cpp:683:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:30,953     683 |   if(&element == NULL) return;
2025-09-08T00:22:30,953         |   ^~
2025-09-08T00:22:30,953   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T00:22:30,953   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:30,953     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:22:30,953         |                  ^
2025-09-08T00:22:30,953   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:30,953     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:22:30,953         |                                      ^
2025-09-08T00:22:30,954   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T00:22:30,954   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:30,954     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:22:30,954         |                  ^
2025-09-08T00:22:30,954   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:30,954     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:22:30,954         |                                      ^
2025-09-08T00:22:30,955   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:22:30,955   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:30,956     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:30,956         |                   ^
2025-09-08T00:22:30,956   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:30,956     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:22:30,956         |                                                  ^
2025-09-08T00:22:35,489   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:22:35,489                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:22:35,489                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:22:35,489                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:22:35,489                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2025-09-08T00:22:35,489   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:35,489      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:35,490         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:35,490   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:35,490                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:22:35,490                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:22:35,491                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T00:22:35,491   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:35,491     117 |     struct unary_function
2025-09-08T00:22:35,491         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:35,722   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2025-09-08T00:22:35,722   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:22:35,723     148 |   if (&uri == NULL) return false;
2025-09-08T00:22:35,723         |            ^
2025-09-08T00:22:35,723   ./base/sbml/extension/SBasePluginCreatorBase.cpp:146:56: note: ‘uri’ declared here
2025-09-08T00:22:35,723     146 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2025-09-08T00:22:35,723         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:22:36,150   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:36,150     148 |   if (&uri == NULL) return false;
2025-09-08T00:22:36,150         |   ^~
2025-09-08T00:22:39,719   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:22:39,720                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:22:39,720                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:22:39,720                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:22:39,720                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:22:39,720                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:22:39,720                    from ./base/sbml/math/ASTBase.cpp:43:
2025-09-08T00:22:39,720   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:39,720      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:39,720         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:39,721   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:39,721                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:22:39,721                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:22:39,721                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:22:39,721                    from ./base/sbml/math/ASTBase.cpp:41:
2025-09-08T00:22:39,721   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:39,721     117 |     struct unary_function
2025-09-08T00:22:39,722         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:40,004   ./base/sbml/math/ASTBase.cpp:67:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:40,005      67 | struct CloneASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2025-09-08T00:22:40,005         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:22:40,005   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:40,005     117 |     struct unary_function
2025-09-08T00:22:40,005         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:40,005   ./base/sbml/math/ASTBase.cpp:75:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:40,005      75 | struct AssignASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2025-09-08T00:22:40,006         |                                       ^~~~~~~~~~~~~~
2025-09-08T00:22:40,006   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:40,006     117 |     struct unary_function
2025-09-08T00:22:40,006         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:40,006   ./base/sbml/math/ASTBase.cpp:86:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:40,006      86 | struct CloneASTPluginEntityNoParent : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2025-09-08T00:22:40,006         |                                              ^~~~~~~~~~~~~~
2025-09-08T00:22:40,006   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:40,006     117 |     struct unary_function
2025-09-08T00:22:40,006         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:40,072   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2025-09-08T00:22:40,072   ./base/sbml/math/ASTBase.cpp:1541:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:40,073    1541 |   if (&stream == NULL) return;
2025-09-08T00:22:40,073         |               ^
2025-09-08T00:22:40,073   ./base/sbml/math/ASTBase.cpp:1539:36: note: ‘stream’ declared here
2025-09-08T00:22:40,073    1539 |                 , XMLOutputStream& stream ) const
2025-09-08T00:22:40,073         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:40,076   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2025-09-08T00:22:40,076   ./base/sbml/math/ASTBase.cpp:1572:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2025-09-08T00:22:40,076    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:22:40,077         |                 ^
2025-09-08T00:22:40,077   ./base/sbml/math/ASTBase.cpp:1568:50: note: ‘mantissa’ declared here
2025-09-08T00:22:40,077    1568 | ASTBase::writeENotation (  const std::string&    mantissa
2025-09-08T00:22:40,077         |                            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:22:40,077   ./base/sbml/math/ASTBase.cpp:1572:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2025-09-08T00:22:40,077    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:22:40,077         |                                      ^
2025-09-08T00:22:40,077   ./base/sbml/math/ASTBase.cpp:1569:56: note: ‘exponent’ declared here
2025-09-08T00:22:40,077    1569 |                                , const std::string&    exponent
2025-09-08T00:22:40,077         |                                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:22:40,078   ./base/sbml/math/ASTBase.cpp:1572:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:40,078    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:22:40,078         |                                                         ^
2025-09-08T00:22:40,078   ./base/sbml/math/ASTBase.cpp:1570:36: note: ‘stream’ declared here
2025-09-08T00:22:40,078    1570 |                 , XMLOutputStream& stream ) const
2025-09-08T00:22:40,078         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:40,080   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2025-09-08T00:22:40,081   ./base/sbml/math/ASTBase.cpp:1585:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:40,081    1585 |   if (&stream == NULL) return;
2025-09-08T00:22:40,081         |               ^
2025-09-08T00:22:40,081   ./base/sbml/math/ASTBase.cpp:1583:44: note: ‘stream’ declared here
2025-09-08T00:22:40,081    1583 | ASTBase::writeNegInfinity(XMLOutputStream& stream) const
2025-09-08T00:22:40,081         |                           ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:40,082   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2025-09-08T00:22:40,083   ./base/sbml/math/ASTBase.cpp:1596:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:40,083    1596 |   if (&stream == NULL) return;
2025-09-08T00:22:40,083         |               ^
2025-09-08T00:22:40,083   ./base/sbml/math/ASTBase.cpp:1594:41: note: ‘stream’ declared here
2025-09-08T00:22:40,083    1594 | ASTBase::writeConstant(XMLOutputStream& stream, const std::string & name) const
2025-09-08T00:22:40,083         |                        ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:40,083   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2025-09-08T00:22:40,084   ./base/sbml/math/ASTBase.cpp:1606:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:40,084    1606 |   if (&stream == NULL) return;
2025-09-08T00:22:40,084         |               ^
2025-09-08T00:22:40,084   ./base/sbml/math/ASTBase.cpp:1604:49: note: ‘stream’ declared here
2025-09-08T00:22:40,084    1604 | ASTBase::writeStartEndElement (XMLOutputStream& stream) const
2025-09-08T00:22:40,084         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:40,100   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T00:22:40,100   ./base/sbml/math/ASTBase.cpp:1910:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:22:40,100    1910 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T00:22:40,101         |                ^
2025-09-08T00:22:40,101   ./base/sbml/math/ASTBase.cpp:1907:60: note: ‘element’ declared here
2025-09-08T00:22:40,101    1907 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T00:22:40,101         |                                            ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:22:40,101   ./base/sbml/math/ASTBase.cpp:1910:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:40,101    1910 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T00:22:40,101         |                                   ^
2025-09-08T00:22:40,101   ./base/sbml/math/ASTBase.cpp:1907:36: note: ‘stream’ declared here
2025-09-08T00:22:40,101    1907 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T00:22:40,101         |                    ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:40,657   ./base/sbml/math/ASTBase.cpp:1910:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,657    1910 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T00:22:40,657         |                                   ^
2025-09-08T00:22:40,657   ./base/sbml/math/ASTBase.cpp:1910:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,657    1910 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T00:22:40,657         |                ^
2025-09-08T00:22:40,679   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2025-09-08T00:22:40,679   ./base/sbml/math/ASTBase.cpp:1541:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,679    1541 |   if (&stream == NULL) return;
2025-09-08T00:22:40,679         |   ^~
2025-09-08T00:22:40,679   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2025-09-08T00:22:40,680   ./base/sbml/math/ASTBase.cpp:1572:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,680    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:22:40,680         |                 ^
2025-09-08T00:22:40,680   ./base/sbml/math/ASTBase.cpp:1572:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,680    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:22:40,680         |                                      ^
2025-09-08T00:22:40,680   ./base/sbml/math/ASTBase.cpp:1572:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,680    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T00:22:40,680         |                                              ^
2025-09-08T00:22:40,681   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2025-09-08T00:22:40,681   ./base/sbml/math/ASTBase.cpp:1585:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,681    1585 |   if (&stream == NULL) return;
2025-09-08T00:22:40,681         |   ^~
2025-09-08T00:22:40,682   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2025-09-08T00:22:40,683   ./base/sbml/math/ASTBase.cpp:1596:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,683    1596 |   if (&stream == NULL) return;
2025-09-08T00:22:40,683         |   ^~
2025-09-08T00:22:40,683   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2025-09-08T00:22:40,683   ./base/sbml/math/ASTBase.cpp:1606:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:40,683    1606 |   if (&stream == NULL) return;
2025-09-08T00:22:40,683         |   ^~
2025-09-08T00:22:47,548   ./base/sbml/math/ASTBinaryFunctionNode.cpp: In member function ‘virtual void ASTBinaryFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:22:47,548   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:47,548     326 |   if (&stream == NULL) return;
2025-09-08T00:22:47,548         |               ^
2025-09-08T00:22:47,548   ./base/sbml/math/ASTBinaryFunctionNode.cpp:324:47: note: ‘stream’ declared here
2025-09-08T00:22:47,548     324 | ASTBinaryFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:22:47,548         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:47,900   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:47,901     326 |   if (&stream == NULL) return;
2025-09-08T00:22:47,901         |   ^~
2025-09-08T00:22:51,279   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:22:51,279                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:22:51,280                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:22:51,280                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:22:51,280                    from ./base/sbml/math/ASTCSymbol.cpp:39:
2025-09-08T00:22:51,280   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:22:51,280      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:22:51,280         |                           ^~~~~~~~~~~~~~
2025-09-08T00:22:51,280   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:22:51,280                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:22:51,280                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:22:51,281                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:22:51,281                    from ./base//sbml/math/ASTCSymbol.h:42,
2025-09-08T00:22:51,281                    from ./base/sbml/math/ASTCSymbol.cpp:36:
2025-09-08T00:22:51,281   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:22:51,281     117 |     struct unary_function
2025-09-08T00:22:51,281         |            ^~~~~~~~~~~~~~
2025-09-08T00:22:55,781   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:22:55,781   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:22:55,781      54 |   if (&s == NULL) return s;
2025-09-08T00:22:55,781         |          ^
2025-09-08T00:22:55,781   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T00:22:55,781      52 | trim (const string& s)
2025-09-08T00:22:55,781         |       ~~~~~~~~~~~~~~^
2025-09-08T00:22:56,160   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:56,160      54 |   if (&s == NULL) return s;
2025-09-08T00:22:56,161         |   ^~
2025-09-08T00:22:59,149   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:22:59,149   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:22:59,149      54 |   if (&s == NULL) return s;
2025-09-08T00:22:59,150         |          ^
2025-09-08T00:22:59,150   ./base/sbml/math/ASTCSymbolDelayNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T00:22:59,150      52 | trim (const string& s)
2025-09-08T00:22:59,150         |       ~~~~~~~~~~~~~~^
2025-09-08T00:22:59,161   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2025-09-08T00:22:59,161   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:22:59,161     273 |   if (&stream == NULL) return;
2025-09-08T00:22:59,161         |               ^
2025-09-08T00:22:59,161   ./base/sbml/math/ASTCSymbolDelayNode.cpp:271:45: note: ‘stream’ declared here
2025-09-08T00:22:59,161     271 | ASTCSymbolDelayNode::write(XMLOutputStream& stream) const
2025-09-08T00:22:59,161         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:22:59,534   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:22:59,534   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:59,534      54 |   if (&s == NULL) return s;
2025-09-08T00:22:59,534         |   ^~
2025-09-08T00:22:59,537   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2025-09-08T00:22:59,537   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:22:59,537     273 |   if (&stream == NULL) return;
2025-09-08T00:22:59,537         |   ^~
2025-09-08T00:23:02,773   ./base/sbml/math/ASTCSymbolTimeNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:23:02,773   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:23:02,773      54 |   if (&s == NULL) return s;
2025-09-08T00:23:02,773         |          ^
2025-09-08T00:23:02,774   ./base/sbml/math/ASTCSymbolTimeNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T00:23:02,774      52 | trim (const string& s)
2025-09-08T00:23:02,774         |       ~~~~~~~~~~~~~~^
2025-09-08T00:23:03,152   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:03,152      54 |   if (&s == NULL) return s;
2025-09-08T00:23:03,152         |   ^~
2025-09-08T00:23:06,005   ./base/sbml/math/ASTCiFunctionNode.cpp: In member function ‘virtual void ASTCiFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:23:06,006   ./base/sbml/math/ASTCiFunctionNode.cpp:216:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:23:06,006     216 |   if (&stream == NULL) return;
2025-09-08T00:23:06,006         |               ^
2025-09-08T00:23:06,006   ./base/sbml/math/ASTCiFunctionNode.cpp:214:43: note: ‘stream’ declared here
2025-09-08T00:23:06,006     214 | ASTCiFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:23:06,006         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:06,360   ./base/sbml/math/ASTCiFunctionNode.cpp:216:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:06,360     216 |   if (&stream == NULL) return;
2025-09-08T00:23:06,360         |   ^~
2025-09-08T00:23:08,996   ./base/sbml/math/ASTCiNumberNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:23:08,997   ./base/sbml/math/ASTCiNumberNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:23:08,997      54 |   if (&s == NULL) return s;
2025-09-08T00:23:08,997         |          ^
2025-09-08T00:23:08,997   ./base/sbml/math/ASTCiNumberNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T00:23:08,997      52 | trim (const string& s)
2025-09-08T00:23:08,997         |       ~~~~~~~~~~~~~~^
2025-09-08T00:23:09,375   ./base/sbml/math/ASTCiNumberNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:09,375      54 |   if (&s == NULL) return s;
2025-09-08T00:23:09,375         |   ^~
2025-09-08T00:23:12,357   ./base/sbml/math/ASTCnBase.cpp: In member function ‘int ASTCnBase::setUnits(const std::string&)’:
2025-09-08T00:23:12,357   ./base/sbml/math/ASTCnBase.cpp:116:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T00:23:12,358     116 |   if (&(units) == NULL)
2025-09-08T00:23:12,358         |                ^
2025-09-08T00:23:12,358   ./base/sbml/math/ASTCnBase.cpp:114:40: note: ‘units’ declared here
2025-09-08T00:23:12,358     114 | ASTCnBase::setUnits(const std::string& units)
2025-09-08T00:23:12,358         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:23:12,723   ./base/sbml/math/ASTCnBase.cpp:116:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:12,724     116 |   if (&(units) == NULL)
2025-09-08T00:23:12,724         |   ^~
2025-09-08T00:23:28,125   ./base/sbml/math/ASTConstantNumberNode.cpp: In member function ‘virtual void ASTConstantNumberNode::write(XMLOutputStream&) const’:
2025-09-08T00:23:28,125   ./base/sbml/math/ASTConstantNumberNode.cpp:179:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:23:28,125     179 |   if (&stream == NULL) return;
2025-09-08T00:23:28,125         |               ^
2025-09-08T00:23:28,126   ./base/sbml/math/ASTConstantNumberNode.cpp:177:47: note: ‘stream’ declared here
2025-09-08T00:23:28,126     177 | ASTConstantNumberNode::write(XMLOutputStream& stream) const
2025-09-08T00:23:28,126         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:28,465   ./base/sbml/math/ASTConstantNumberNode.cpp:179:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:28,465     179 |   if (&stream == NULL) return;
2025-09-08T00:23:28,465         |   ^~
2025-09-08T00:23:31,554   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:23:31,555                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:23:31,555                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:23:31,555                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:23:31,555                    from ./base/sbml/math/ASTFunction.cpp:38:
2025-09-08T00:23:31,555   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:23:31,555      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:23:31,555         |                           ^~~~~~~~~~~~~~
2025-09-08T00:23:31,555   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:23:31,556                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:23:31,556                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:23:31,556                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:23:31,556                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T00:23:31,556                    from ./base/sbml/math/ASTFunction.cpp:36:
2025-09-08T00:23:31,556   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:23:31,556     117 |     struct unary_function
2025-09-08T00:23:31,556         |            ^~~~~~~~~~~~~~
2025-09-08T00:23:31,789   ./base/sbml/math/ASTFunction.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T00:23:31,789   ./base/sbml/math/ASTFunction.cpp:148:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T00:23:31,789     148 |   if (&s == NULL) return s;
2025-09-08T00:23:31,790         |          ^
2025-09-08T00:23:31,790   ./base/sbml/math/ASTFunction.cpp:146:21: note: ‘s’ declared here
2025-09-08T00:23:31,790     146 | trim (const string& s)
2025-09-08T00:23:31,790         |       ~~~~~~~~~~~~~~^
2025-09-08T00:23:32,532   ./base/sbml/math/ASTFunction.cpp:148:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:32,532     148 |   if (&s == NULL) return s;
2025-09-08T00:23:32,532         |   ^~
2025-09-08T00:23:40,267   ./base/sbml/math/ASTFunctionBase.cpp: In member function ‘void ASTFunctionBase::writeArgumentsOfType(XMLOutputStream&, int) const’:
2025-09-08T00:23:40,267   ./base/sbml/math/ASTFunctionBase.cpp:349:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:23:40,267     349 |   if (&stream == NULL) return;
2025-09-08T00:23:40,267         |               ^
2025-09-08T00:23:40,267   ./base/sbml/math/ASTFunctionBase.cpp:347:56: note: ‘stream’ declared here
2025-09-08T00:23:40,267     347 | ASTFunctionBase::writeArgumentsOfType(XMLOutputStream& stream, int type) const
2025-09-08T00:23:40,267         |                                       ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:40,706   ./base/sbml/math/ASTFunctionBase.cpp:349:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:40,706     349 |   if (&stream == NULL) return;
2025-09-08T00:23:40,706         |   ^~
2025-09-08T00:23:43,940   ./base/sbml/math/ASTLambdaFunctionNode.cpp: In member function ‘virtual void ASTLambdaFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:23:43,941   ./base/sbml/math/ASTLambdaFunctionNode.cpp:325:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:23:43,941     325 |   if (&stream == NULL) return;
2025-09-08T00:23:43,941         |               ^
2025-09-08T00:23:43,941   ./base/sbml/math/ASTLambdaFunctionNode.cpp:323:47: note: ‘stream’ declared here
2025-09-08T00:23:43,941     323 | ASTLambdaFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:23:43,941         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:44,318   ./base/sbml/math/ASTLambdaFunctionNode.cpp:325:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:44,319     325 |   if (&stream == NULL) return;
2025-09-08T00:23:44,319         |   ^~
2025-09-08T00:23:47,676   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:23:47,676                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:23:47,676                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:23:47,677                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:23:47,677                    from ./base/sbml/math/ASTNaryFunctionNode.cpp:40:
2025-09-08T00:23:47,677   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:23:47,677      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:23:47,677         |                           ^~~~~~~~~~~~~~
2025-09-08T00:23:47,677   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:23:47,677                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:23:47,677                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:23:47,677                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:23:47,677                    from ./base//sbml/math/ASTFunctionBase.h:42,
2025-09-08T00:23:47,678                    from ./base//sbml/math/ASTNaryFunctionNode.h:42,
2025-09-08T00:23:47,678                    from ./base/sbml/math/ASTNaryFunctionNode.cpp:36:
2025-09-08T00:23:47,678   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:23:47,678     117 |     struct unary_function
2025-09-08T00:23:47,678         |            ^~~~~~~~~~~~~~
2025-09-08T00:23:47,919   ./base/sbml/math/ASTNaryFunctionNode.cpp: In member function ‘virtual void ASTNaryFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:23:47,920   ./base/sbml/math/ASTNaryFunctionNode.cpp:374:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:23:47,920     374 |   if (&stream == NULL) return;
2025-09-08T00:23:47,920         |               ^
2025-09-08T00:23:47,920   ./base/sbml/math/ASTNaryFunctionNode.cpp:372:45: note: ‘stream’ declared here
2025-09-08T00:23:47,920     372 | ASTNaryFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:23:47,920         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:23:48,366   ./base/sbml/math/ASTNaryFunctionNode.cpp:374:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:23:48,366     374 |   if (&stream == NULL) return;
2025-09-08T00:23:48,366         |   ^~
2025-09-08T00:23:52,124   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:23:52,124                    from ./base//sbml/Model.h:446,
2025-09-08T00:23:52,124                    from ./base/sbml/math/ASTNode.cpp:41:
2025-09-08T00:23:52,124   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:23:52,124      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:23:52,124         |                           ^~~~~~~~~~~~~~
2025-09-08T00:23:52,124   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:23:52,125                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:23:52,125                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:23:52,125                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:23:52,125                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T00:23:52,125                    from ./base//sbml/math/ASTNode.h:147,
2025-09-08T00:23:52,125                    from ./base/sbml/math/ASTNode.cpp:34:
2025-09-08T00:23:52,125   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:23:52,125     117 |     struct unary_function
2025-09-08T00:23:52,125         |            ^~~~~~~~~~~~~~
2025-09-08T00:23:52,404   ./base/sbml/math/ASTNode.cpp:141:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:23:52,404     141 | struct DeleteASTPluginEntity : public unary_function<ASTBasePlugin*, void>
2025-09-08T00:23:52,404         |                                       ^~~~~~~~~~~~~~
2025-09-08T00:23:52,404   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:23:52,404     117 |     struct unary_function
2025-09-08T00:23:52,404         |            ^~~~~~~~~~~~~~
2025-09-08T00:24:01,921   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:24:01,921                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:24:01,921                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:24:01,921                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:24:01,922                    from ./base/sbml/math/ASTNumber.cpp:38:
2025-09-08T00:24:01,922   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:24:01,922      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:24:01,922         |                           ^~~~~~~~~~~~~~
2025-09-08T00:24:01,922   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:24:01,922                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:24:01,922                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:24:01,922                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:24:01,922                    from ./base//sbml/math/ASTNumber.h:42,
2025-09-08T00:24:01,923                    from ./base/sbml/math/ASTNumber.cpp:36:
2025-09-08T00:24:01,923   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:24:01,923     117 |     struct unary_function
2025-09-08T00:24:01,923         |            ^~~~~~~~~~~~~~
2025-09-08T00:24:07,962   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp: In member function ‘virtual void ASTPiecewiseFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:24:07,962   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:24:07,962     714 |   if (&stream == NULL) return;
2025-09-08T00:24:07,962         |               ^
2025-09-08T00:24:07,962   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:712:50: note: ‘stream’ declared here
2025-09-08T00:24:07,962     712 | ASTPiecewiseFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:24:07,963         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:24:08,355   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:24:08,356     714 |   if (&stream == NULL) return;
2025-09-08T00:24:08,356         |   ^~
2025-09-08T00:24:11,281   ./base/sbml/math/ASTQualifierNode.cpp: In member function ‘virtual void ASTQualifierNode::write(XMLOutputStream&) const’:
2025-09-08T00:24:11,281   ./base/sbml/math/ASTQualifierNode.cpp:157:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:24:11,281     157 |   if (&stream == NULL) return;
2025-09-08T00:24:11,281         |               ^
2025-09-08T00:24:11,282   ./base/sbml/math/ASTQualifierNode.cpp:155:42: note: ‘stream’ declared here
2025-09-08T00:24:11,282     155 | ASTQualifierNode::write(XMLOutputStream& stream) const
2025-09-08T00:24:11,282         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:24:11,625   ./base/sbml/math/ASTQualifierNode.cpp:157:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:24:11,626     157 |   if (&stream == NULL) return;
2025-09-08T00:24:11,626         |   ^~
2025-09-08T00:24:14,041   ./base/sbml/math/ASTSemanticsNode.cpp: In member function ‘virtual void ASTSemanticsNode::write(XMLOutputStream&) const’:
2025-09-08T00:24:14,041   ./base/sbml/math/ASTSemanticsNode.cpp:255:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:24:14,041     255 |   if (&stream == NULL) return;
2025-09-08T00:24:14,041         |               ^
2025-09-08T00:24:14,041   ./base/sbml/math/ASTSemanticsNode.cpp:253:42: note: ‘stream’ declared here
2025-09-08T00:24:14,041     253 | ASTSemanticsNode::write(XMLOutputStream& stream) const
2025-09-08T00:24:14,042         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:24:14,410   ./base/sbml/math/ASTSemanticsNode.cpp:255:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:24:14,410     255 |   if (&stream == NULL) return;
2025-09-08T00:24:14,410         |   ^~
2025-09-08T00:24:17,978   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:24:17,978                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:24:17,978                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:24:17,978                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T00:24:17,978                    from ./base/sbml/math/ASTTypes.cpp:38:
2025-09-08T00:24:17,978   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:24:17,978      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:24:17,978         |                           ^~~~~~~~~~~~~~
2025-09-08T00:24:17,979   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:24:17,979                    from ./base//sbml/math/ASTTypes.h:183,
2025-09-08T00:24:17,979                    from ./base/sbml/math/ASTTypes.cpp:36:
2025-09-08T00:24:17,979   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:24:17,979     117 |     struct unary_function
2025-09-08T00:24:17,979         |            ^~~~~~~~~~~~~~
2025-09-08T00:24:18,216   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2025-09-08T00:24:18,216   ./base/sbml/math/ASTTypes.cpp:439:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:24:18,216     439 |   if (&name == NULL)
2025-09-08T00:24:18,216         |             ^
2025-09-08T00:24:18,216   ./base/sbml/math/ASTTypes.cpp:437:56: note: ‘name’ declared here
2025-09-08T00:24:18,217     437 | isCoreTopLevelMathMLFunctionNodeTag(const std::string& name)
2025-09-08T00:24:18,217         |                                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:24:18,219   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2025-09-08T00:24:18,219   ./base/sbml/math/ASTTypes.cpp:465:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:24:18,219     465 |   if (&name == NULL)
2025-09-08T00:24:18,219         |             ^
2025-09-08T00:24:18,219   ./base/sbml/math/ASTTypes.cpp:463:54: note: ‘name’ declared here
2025-09-08T00:24:18,219     463 | isCoreTopLevelMathMLNumberNodeTag(const std::string& name)
2025-09-08T00:24:18,219         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:24:18,628   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2025-09-08T00:24:18,628   ./base/sbml/math/ASTTypes.cpp:439:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:24:18,628     439 |   if (&name == NULL)
2025-09-08T00:24:18,629         |   ^~
2025-09-08T00:24:18,629   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2025-09-08T00:24:18,629   ./base/sbml/math/ASTTypes.cpp:465:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:24:18,629     465 |   if (&name == NULL)
2025-09-08T00:24:18,629         |   ^~
2025-09-08T00:24:21,071   ./base/sbml/math/ASTUnaryFunctionNode.cpp: In member function ‘virtual void ASTUnaryFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T00:24:21,071   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:24:21,071     192 |   if (&stream == NULL) return;
2025-09-08T00:24:21,071         |               ^
2025-09-08T00:24:21,072   ./base/sbml/math/ASTUnaryFunctionNode.cpp:190:46: note: ‘stream’ declared here
2025-09-08T00:24:21,072     190 | ASTUnaryFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T00:24:21,072         |                             ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:24:21,416   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:24:21,416     192 |   if (&stream == NULL) return;
2025-09-08T00:24:21,416         |   ^~
2025-09-08T00:24:26,412   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:24:26,412                    from ./base//sbml/Model.h:446,
2025-09-08T00:24:26,412                    from L3Parser.ypp:83:
2025-09-08T00:24:26,412   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:24:26,412      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:24:26,413         |                           ^~~~~~~~~~~~~~
2025-09-08T00:24:26,413   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:24:26,413                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:24:26,413                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:24:26,413                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T00:24:26,413                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T00:24:26,413                    from ./base//sbml/math/ASTNode.h:147,
2025-09-08T00:24:26,413                    from ./base//sbml/math/L3Parser.h:37,
2025-09-08T00:24:26,413                    from L3Parser.ypp:82:
2025-09-08T00:24:26,414   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:24:26,414     117 |     struct unary_function
2025-09-08T00:24:26,414         |            ^~~~~~~~~~~~~~
2025-09-08T00:24:36,506   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:24:36,506                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:24:36,506                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:24:36,506                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:24:36,506                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:24:36,506                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T00:24:36,506                    from ./base/sbml/math/L3ParserSettings.cpp:35:
2025-09-08T00:24:36,507   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:24:36,507      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:24:36,507         |                           ^~~~~~~~~~~~~~
2025-09-08T00:24:36,508   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T00:24:36,508                    from /usr/include/c++/14/vector:68,
2025-09-08T00:24:36,508                    from ./base//sbml/math/L3ParserSettings.h:313,
2025-09-08T00:24:36,508                    from ./base/sbml/math/L3ParserSettings.cpp:34:
2025-09-08T00:24:36,508   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:24:36,508     117 |     struct unary_function
2025-09-08T00:24:36,508         |            ^~~~~~~~~~~~~~
2025-09-08T00:24:40,093   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2025-09-08T00:24:40,093   ./base/sbml/math/MathML.cpp:90:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:24:40,093      90 |   if (&stream == NULL) return NULL;
2025-09-08T00:24:40,093         |               ^
2025-09-08T00:24:40,093   ./base/sbml/math/MathML.cpp:88:29: note: ‘stream’ declared here
2025-09-08T00:24:40,093      88 | readMathML (XMLInputStream& stream, const std::string& reqd_prefix)
2025-09-08T00:24:40,093         |             ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:24:40,094   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T00:24:40,094   ./base/sbml/math/MathML.cpp:116:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:24:40,094     116 |   if (node == NULL || &stream == NULL) return;
2025-09-08T00:24:40,094         |                               ^
2025-09-08T00:24:40,094   ./base/sbml/math/MathML.cpp:114:52: note: ‘stream’ declared here
2025-09-08T00:24:40,095     114 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T00:24:40,095         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:24:40,456   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2025-09-08T00:24:40,456   ./base/sbml/math/MathML.cpp:90:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:24:40,456      90 |   if (&stream == NULL) return NULL;
2025-09-08T00:24:40,456         |   ^~
2025-09-08T00:24:40,456   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T00:24:40,456   ./base/sbml/math/MathML.cpp:116:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:24:40,456     116 |   if (node == NULL || &stream == NULL) return;
2025-09-08T00:24:40,456         |                               ^
2025-09-08T00:24:43,921   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:24:43,921                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:24:43,921                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:24:43,921                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:24:43,921                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:24:43,921                    from ./base//sbml/extension/SBMLExtensionRegister.h:42,
2025-09-08T00:24:43,921                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2025-09-08T00:24:43,921   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:24:43,922      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:24:43,922         |                           ^~~~~~~~~~~~~~
2025-09-08T00:24:43,922   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:24:43,922                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:24:43,922                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:24:43,922                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T00:24:43,922   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:24:43,922     117 |     struct unary_function
2025-09-08T00:24:43,922         |            ^~~~~~~~~~~~~~
2025-09-08T00:24:49,136   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:24:49,136                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:24:49,136                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:24:49,137                    from ./base//sbml/extension/SBasePlugin.h:253,
2025-09-08T00:24:49,137                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2025-09-08T00:24:49,137                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2025-09-08T00:24:49,137   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:24:49,137      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:24:49,137         |                           ^~~~~~~~~~~~~~
2025-09-08T00:24:49,137   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:24:49,137                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:24:49,137                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:24:49,137                    from /usr/include/c++/14/ios:44,
2025-09-08T00:24:49,138                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:24:49,138                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2025-09-08T00:24:49,138   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:24:49,138     117 |     struct unary_function
2025-09-08T00:24:49,138         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:01,221   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:01,221                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:01,221                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:01,221                    from ./base//sbml/extension/SBasePlugin.h:253,
2025-09-08T00:25:01,221                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:67,
2025-09-08T00:25:01,221                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2025-09-08T00:25:01,221   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:01,222      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:01,222         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:01,222   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:01,222                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:01,222                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:01,222                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:01,222                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:01,222                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2025-09-08T00:25:01,223   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:01,223     117 |     struct unary_function
2025-09-08T00:25:01,223         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:08,521   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:08,521                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:08,522                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:08,522                    from ./base//sbml/extension/SBasePlugin.h:253,
2025-09-08T00:25:08,522                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:64,
2025-09-08T00:25:08,522                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2025-09-08T00:25:08,522   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:08,522      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:08,522         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:08,522   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:08,523                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:08,523                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:08,523                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:08,523                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:08,523                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2025-09-08T00:25:08,523   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:08,523     117 |     struct unary_function
2025-09-08T00:25:08,523         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:08,883   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2025-09-08T00:25:08,884   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:25:08,884     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:25:08,884         |                  ^
2025-09-08T00:25:08,884   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:450:50: note: ‘attribute’ declared here
2025-09-08T00:25:08,884     450 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2025-09-08T00:25:08,884         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:25:08,884   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T00:25:08,884     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:25:08,885         |                                             ^
2025-09-08T00:25:08,885   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:451:50: note: ‘wrongattribute’ declared here
2025-09-08T00:25:08,885     451 |                               const std::string& wrongattribute)
2025-09-08T00:25:08,885         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T00:25:09,364   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:09,364     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:25:09,364         |                  ^
2025-09-08T00:25:09,364   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:09,364     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:25:09,364         |                                             ^
2025-09-08T00:25:13,953   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:13,954                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:13,954                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:13,954                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:25:13,954                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:25:13,954                    from ./base//sbml/packages/comp/sbml/CompBase.h:42,
2025-09-08T00:25:13,954                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:28:
2025-09-08T00:25:13,954   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:13,954      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:13,954         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:13,955   In file included from /usr/include/c++/14/bits/stl_tree.h:65,
2025-09-08T00:25:13,955                    from /usr/include/c++/14/set:62,
2025-09-08T00:25:13,955                    from ./base//sbml/packages/comp/sbml/CompBase.h:39:
2025-09-08T00:25:13,955   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:13,955     117 |     struct unary_function
2025-09-08T00:25:13,956         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:14,356   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:25:14,356   ./base/sbml/packages/comp/sbml/CompBase.cpp:160:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:25:14,356     160 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:25:14,357         |                   ^
2025-09-08T00:25:14,357   ./base/sbml/packages/comp/sbml/CompBase.cpp:156:48: note: ‘attributes’ declared here
2025-09-08T00:25:14,357     156 | CompBase::readAttributes (const XMLAttributes& attributes,
2025-09-08T00:25:14,357         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:25:14,357   ./base/sbml/packages/comp/sbml/CompBase.cpp:160:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T00:25:14,357     160 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:25:14,357         |                                                  ^
2025-09-08T00:25:14,358   ./base/sbml/packages/comp/sbml/CompBase.cpp:157:53: note: ‘expectedAttributes’ declared here
2025-09-08T00:25:14,358     157 |                           const ExpectedAttributes& expectedAttributes)
2025-09-08T00:25:14,358         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:25:14,360   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T00:25:14,361   ./base/sbml/packages/comp/sbml/CompBase.cpp:205:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:25:14,361     205 |   if(&element == NULL) return;
2025-09-08T00:25:14,361         |               ^
2025-09-08T00:25:14,361   ./base/sbml/packages/comp/sbml/CompBase.cpp:203:48: note: ‘element’ declared here
2025-09-08T00:25:14,361     203 | CompBase::logUnknownElement(const std::string &element)
2025-09-08T00:25:14,361         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:25:14,368   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T00:25:14,368   ./base/sbml/packages/comp/sbml/CompBase.cpp:231:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:25:14,368     231 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,368         |                  ^
2025-09-08T00:25:14,369   ./base/sbml/packages/comp/sbml/CompBase.cpp:228:50: note: ‘attribute’ declared here
2025-09-08T00:25:14,369     228 | CompBase::logUnknownAttribute(const std::string &attribute,
2025-09-08T00:25:14,369         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:25:14,369   ./base/sbml/packages/comp/sbml/CompBase.cpp:231:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:25:14,369     231 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,369         |                                      ^
2025-09-08T00:25:14,369   ./base/sbml/packages/comp/sbml/CompBase.cpp:229:50: note: ‘element’ declared here
2025-09-08T00:25:14,370     229 |                               const std::string& element)
2025-09-08T00:25:14,370         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:25:14,377   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T00:25:14,377   ./base/sbml/packages/comp/sbml/CompBase.cpp:267:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:25:14,377     267 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,377         |                  ^
2025-09-08T00:25:14,377   ./base/sbml/packages/comp/sbml/CompBase.cpp:263:45: note: ‘attribute’ declared here
2025-09-08T00:25:14,377     263 | CompBase::logEmptyString(const std::string &attribute,
2025-09-08T00:25:14,378         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:25:14,378   ./base/sbml/packages/comp/sbml/CompBase.cpp:267:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:25:14,378     267 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,378         |                                      ^
2025-09-08T00:25:14,378   ./base/sbml/packages/comp/sbml/CompBase.cpp:264:45: note: ‘element’ declared here
2025-09-08T00:25:14,378     264 |                          const std::string& element)
2025-09-08T00:25:14,378         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:25:14,383   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:25:14,383   ./base/sbml/packages/comp/sbml/CompBase.cpp:291:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:25:14,383     291 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:25:14,383         |                  ^
2025-09-08T00:25:14,384   ./base/sbml/packages/comp/sbml/CompBase.cpp:286:43: note: ‘attribute’ declared here
2025-09-08T00:25:14,384     286 | CompBase::logInvalidId(const std::string& attribute,
2025-09-08T00:25:14,384         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:25:14,384   ./base/sbml/packages/comp/sbml/CompBase.cpp:291:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T00:25:14,384     291 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:25:14,384         |                                             ^
2025-09-08T00:25:14,385   ./base/sbml/packages/comp/sbml/CompBase.cpp:287:43: note: ‘wrongattribute’ declared here
2025-09-08T00:25:14,385     287 |                        const std::string& wrongattribute,
2025-09-08T00:25:14,385         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T00:25:14,403   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T00:25:14,403   ./base/sbml/packages/comp/sbml/CompBase.cpp:389:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T00:25:14,403     389 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,403         |                  ^
2025-09-08T00:25:14,404   ./base/sbml/packages/comp/sbml/CompBase.cpp:385:50: note: ‘attribute’ declared here
2025-09-08T00:25:14,404     385 | CompBase::logMissingAttribute(const std::string& attribute,
2025-09-08T00:25:14,404         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:25:14,404   ./base/sbml/packages/comp/sbml/CompBase.cpp:389:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:25:14,404     389 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,404         |                                      ^
2025-09-08T00:25:14,405   ./base/sbml/packages/comp/sbml/CompBase.cpp:386:50: note: ‘element’ declared here
2025-09-08T00:25:14,405     386 |                               const std::string& element)
2025-09-08T00:25:14,405         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:25:14,979   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T00:25:14,979   ./base/sbml/packages/comp/sbml/CompBase.cpp:205:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,979     205 |   if(&element == NULL) return;
2025-09-08T00:25:14,979         |   ^~
2025-09-08T00:25:14,980   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T00:25:14,980   ./base/sbml/packages/comp/sbml/CompBase.cpp:231:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,980     231 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,980         |                  ^
2025-09-08T00:25:14,981   ./base/sbml/packages/comp/sbml/CompBase.cpp:231:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,981     231 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,981         |                                      ^
2025-09-08T00:25:14,982   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T00:25:14,982   ./base/sbml/packages/comp/sbml/CompBase.cpp:267:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,982     267 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,982         |                  ^
2025-09-08T00:25:14,982   ./base/sbml/packages/comp/sbml/CompBase.cpp:267:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,982     267 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,982         |                                      ^
2025-09-08T00:25:14,984   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:25:14,984   ./base/sbml/packages/comp/sbml/CompBase.cpp:291:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,984     291 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:25:14,985         |                  ^
2025-09-08T00:25:14,985   ./base/sbml/packages/comp/sbml/CompBase.cpp:291:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,985     291 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T00:25:14,985         |                                             ^
2025-09-08T00:25:14,986   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T00:25:14,986   ./base/sbml/packages/comp/sbml/CompBase.cpp:389:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,987     389 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,987         |                  ^
2025-09-08T00:25:14,987   ./base/sbml/packages/comp/sbml/CompBase.cpp:389:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,987     389 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T00:25:14,987         |                                      ^
2025-09-08T00:25:14,996   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T00:25:14,996   ./base/sbml/packages/comp/sbml/CompBase.cpp:160:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,996     160 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:25:14,996         |                   ^
2025-09-08T00:25:14,996   ./base/sbml/packages/comp/sbml/CompBase.cpp:160:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:14,996     160 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T00:25:14,997         |                                                  ^
2025-09-08T00:25:20,617   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:20,618                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:20,618                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:20,618                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:25:20,618                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:25:20,618                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:25:20,618                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2025-09-08T00:25:20,618   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:20,618      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:20,618         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:20,619   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:20,619                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:20,619                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:20,619                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:20,619                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:20,619                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:25:20,619                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2025-09-08T00:25:20,619   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:20,619     117 |     struct unary_function
2025-09-08T00:25:20,620         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:26,122   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:26,122                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:26,122                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:26,122                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:25:26,122                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:25:26,122                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:25:26,122                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2025-09-08T00:25:26,123   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:26,123      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:26,123         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:26,123   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:26,123                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:26,123                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:26,123                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:26,123                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:26,123                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:25:26,123                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2025-09-08T00:25:26,124   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:26,124     117 |     struct unary_function
2025-09-08T00:25:26,124         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:35,283   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:35,283                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:35,283                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:35,283                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:25:35,283                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:25:35,283                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:25:35,283                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2025-09-08T00:25:35,284   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:35,284      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:35,284         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:35,284   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:35,285                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:35,285                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:35,285                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:35,285                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:35,285                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:25:35,285                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2025-09-08T00:25:35,285   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:35,285     117 |     struct unary_function
2025-09-08T00:25:35,285         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:35,619   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2025-09-08T00:25:35,620   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:25:35,620     118 |   if (&(sid) != NULL)
2025-09-08T00:25:35,620         |              ^
2025-09-08T00:25:35,620   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2025-09-08T00:25:35,620     113 | ListOfDeletions::remove (const std::string& sid)
2025-09-08T00:25:35,620         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:25:36,091   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:36,091     118 |   if (&(sid) != NULL)
2025-09-08T00:25:36,091         |   ^~
2025-09-08T00:25:39,915   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:39,915                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:39,915                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:39,915                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:25:39,915                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:25:39,916                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:25:39,916                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2025-09-08T00:25:39,916   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:39,916      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:39,916         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:39,916   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:39,916                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:39,916                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:39,916                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:39,917                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:39,917                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:25:39,917                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2025-09-08T00:25:39,917   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:39,917     117 |     struct unary_function
2025-09-08T00:25:39,917         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:44,541   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:44,541                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:44,541                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:44,541                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:25:44,541                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:25:44,541                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:25:44,541                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2025-09-08T00:25:44,542   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:44,542      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:44,542         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:44,542   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:44,542                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:44,542                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:44,542                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:44,542                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:44,543                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:25:44,543                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2025-09-08T00:25:44,543   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:44,543     117 |     struct unary_function
2025-09-08T00:25:44,543         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:49,169   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:49,169                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:49,169                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:49,169                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:25:49,169                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:25:49,169                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:25:49,169                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2025-09-08T00:25:49,170   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:49,170      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:49,170         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:49,170   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:49,170                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:49,170                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:49,170                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:49,170                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:49,170                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:25:49,171                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2025-09-08T00:25:49,171   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:49,171     117 |     struct unary_function
2025-09-08T00:25:49,171         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:49,503   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2025-09-08T00:25:49,503   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:25:49,503     113 |   if (&(sid) != NULL)
2025-09-08T00:25:49,503         |              ^
2025-09-08T00:25:49,503   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2025-09-08T00:25:49,504     108 | ListOfPorts::remove (const std::string& sid)
2025-09-08T00:25:49,504         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:25:49,969   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:49,969     113 |   if (&(sid) != NULL)
2025-09-08T00:25:49,969         |   ^~
2025-09-08T00:25:53,743   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:53,743                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:53,743                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:53,743                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:25:53,743                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:25:53,743                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:25:53,744                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2025-09-08T00:25:53,744   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:53,744      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:53,744         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:53,744   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:53,744                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:53,744                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:53,744                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:53,744                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:53,744                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:25:53,745                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2025-09-08T00:25:53,745   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:53,745     117 |     struct unary_function
2025-09-08T00:25:53,745         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:58,004   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:25:58,005                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:25:58,005                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:25:58,005                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:25:58,005                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:25:58,005                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:25:58,005                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2025-09-08T00:25:58,005   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:25:58,005      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:25:58,006         |                           ^~~~~~~~~~~~~~
2025-09-08T00:25:58,006   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:25:58,006                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:25:58,006                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:25:58,006                    from /usr/include/c++/14/ios:44,
2025-09-08T00:25:58,006                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:25:58,006                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:25:58,006                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2025-09-08T00:25:58,006   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:25:58,006     117 |     struct unary_function
2025-09-08T00:25:58,006         |            ^~~~~~~~~~~~~~
2025-09-08T00:25:58,344   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2025-09-08T00:25:58,344   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T00:25:58,344     113 |   if (&(sid) != NULL)
2025-09-08T00:25:58,344         |              ^
2025-09-08T00:25:58,344   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2025-09-08T00:25:58,345     108 | ListOfSubmodels::remove (const std::string& sid)
2025-09-08T00:25:58,345         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:25:58,815   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:25:58,816     113 |   if (&(sid) != NULL)
2025-09-08T00:25:58,816         |   ^~
2025-09-08T00:26:02,618   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:26:02,618                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:26:02,618                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:26:02,618                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:26:02,619                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:26:02,619                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:26:02,619                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2025-09-08T00:26:02,619   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:26:02,619      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:26:02,619         |                           ^~~~~~~~~~~~~~
2025-09-08T00:26:02,619   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:26:02,619                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:26:02,619                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:26:02,620                    from /usr/include/c++/14/ios:44,
2025-09-08T00:26:02,620                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:26:02,620                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:26:02,620                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2025-09-08T00:26:02,620   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:26:02,620     117 |     struct unary_function
2025-09-08T00:26:02,620         |            ^~~~~~~~~~~~~~
2025-09-08T00:26:06,992   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:26:06,992                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:26:06,992                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:26:06,992                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:26:06,992                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:26:06,992                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:26:06,993                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2025-09-08T00:26:06,993   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:26:06,993      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:26:06,993         |                           ^~~~~~~~~~~~~~
2025-09-08T00:26:06,993   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:26:06,993                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:26:06,993                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:26:06,993                    from /usr/include/c++/14/ios:44,
2025-09-08T00:26:06,993                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:26:06,994                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:26:06,994                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2025-09-08T00:26:06,994   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:26:06,994     117 |     struct unary_function
2025-09-08T00:26:06,994         |            ^~~~~~~~~~~~~~
2025-09-08T00:26:12,242   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:55,
2025-09-08T00:26:12,242                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2025-09-08T00:26:12,242   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:26:12,243      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:26:12,243         |                           ^~~~~~~~~~~~~~
2025-09-08T00:26:12,243   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:26:12,243                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:26:12,243                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:26:12,243                    from /usr/include/c++/14/ios:44,
2025-09-08T00:26:12,243                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:26:12,243                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:26:12,243                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2025-09-08T00:26:12,243   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:26:12,244     117 |     struct unary_function
2025-09-08T00:26:12,244         |            ^~~~~~~~~~~~~~
2025-09-08T00:26:17,026   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:26:17,026                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:26:17,027                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:26:17,027                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:26:17,027                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:26:17,027                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:26:17,027                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2025-09-08T00:26:17,027   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:26:17,027      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:26:17,027         |                           ^~~~~~~~~~~~~~
2025-09-08T00:26:17,027   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:26:17,028                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:26:17,028                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:26:17,028                    from /usr/include/c++/14/ios:44,
2025-09-08T00:26:17,028                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:26:17,028                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:26:17,028                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2025-09-08T00:26:17,028   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:26:17,028     117 |     struct unary_function
2025-09-08T00:26:17,028         |            ^~~~~~~~~~~~~~
2025-09-08T00:26:23,914   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:26:23,915                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:26:23,915                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:26:23,915                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:26:23,915                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:26:23,915                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:26:23,915                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2025-09-08T00:26:23,915   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:26:23,915      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:26:23,915         |                           ^~~~~~~~~~~~~~
2025-09-08T00:26:23,916   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:26:23,916                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:26:23,916                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:26:23,916                    from /usr/include/c++/14/ios:44,
2025-09-08T00:26:23,916                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:26:23,916                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:26:23,916                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2025-09-08T00:26:23,916   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:26:23,916     117 |     struct unary_function
2025-09-08T00:26:23,916         |            ^~~~~~~~~~~~~~
2025-09-08T00:26:30,972   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:26:30,972                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:26:30,973                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:26:30,973                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:26:30,973                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:26:30,973                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T00:26:30,973                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:36:
2025-09-08T00:26:30,973   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:26:30,973      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:26:30,973         |                           ^~~~~~~~~~~~~~
2025-09-08T00:26:30,973   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:26:30,974                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:26:30,974                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:26:30,974                    from /usr/include/c++/14/ios:44,
2025-09-08T00:26:30,974                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:26:30,974                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:26:30,974                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:27:
2025-09-08T00:26:30,974   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:26:30,974     117 |     struct unary_function
2025-09-08T00:26:30,974         |            ^~~~~~~~~~~~~~
2025-09-08T00:26:39,735   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:26:39,736                    from ./base//sbml/RateRule.h:113,
2025-09-08T00:26:39,736                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2025-09-08T00:26:39,736   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:26:39,736      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:26:39,736         |                           ^~~~~~~~~~~~~~
2025-09-08T00:26:39,736   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:26:39,736                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:26:39,736                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:26:39,737                    from /usr/include/c++/14/ios:44,
2025-09-08T00:26:39,737                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:26:39,737                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:26:39,737                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2025-09-08T00:26:39,737   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:26:39,737     117 |     struct unary_function
2025-09-08T00:26:39,737         |            ^~~~~~~~~~~~~~
2025-09-08T00:26:52,629   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:26:52,630                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:26:52,630                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:26:52,630                    from ./base//sbml/extension/SBasePlugin.h:253,
2025-09-08T00:26:52,630                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2025-09-08T00:26:52,630                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:151,
2025-09-08T00:26:52,630                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2025-09-08T00:26:52,630   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:26:52,630      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:26:52,630         |                           ^~~~~~~~~~~~~~
2025-09-08T00:26:52,631   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:26:52,631                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:26:52,631                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:26:52,631                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:150:
2025-09-08T00:26:52,631   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:26:52,631     117 |     struct unary_function
2025-09-08T00:26:52,631         |            ^~~~~~~~~~~~~~
2025-09-08T00:26:53,106   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:26:53,106   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:121:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:26:53,106     121 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T00:26:53,106         |              ^
2025-09-08T00:26:53,106   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:119:54: note: ‘props’ declared here
2025-09-08T00:26:53,106     119 |                         (const ConversionProperties &props) const
2025-09-08T00:26:53,106         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:26:53,871   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:121:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:26:53,871     121 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T00:26:53,871         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:27:01,343   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:27:01,344                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:27:01,344                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:27:01,344                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2025-09-08T00:27:01,344   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:01,344      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:01,344         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:01,344   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:27:01,345                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2025-09-08T00:27:01,345                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2025-09-08T00:27:01,345   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:01,345     117 |     struct unary_function
2025-09-08T00:27:01,345         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:01,680   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T00:27:01,681   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:27:01,681      54 |   if (&orig == NULL)
2025-09-08T00:27:01,681         |             ^
2025-09-08T00:27:01,681   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2025-09-08T00:27:01,681      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2025-09-08T00:27:01,681         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:27:01,682   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2025-09-08T00:27:01,682   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:27:01,683      80 |   if (&rhs == NULL)
2025-09-08T00:27:01,683         |            ^
2025-09-08T00:27:01,683   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2025-09-08T00:27:01,683      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2025-09-08T00:27:01,683         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:27:02,160   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:27:02,161      80 |   if (&rhs == NULL)
2025-09-08T00:27:02,161         |   ^~
2025-09-08T00:27:02,167   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T00:27:02,168   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:27:02,168      54 |   if (&orig == NULL)
2025-09-08T00:27:02,168         |   ^~
2025-09-08T00:27:06,120   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:27:06,120                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:27:06,120                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:27:06,120                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2025-09-08T00:27:06,120   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:06,120      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:06,120         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:06,121   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:27:06,121                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2025-09-08T00:27:06,121                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2025-09-08T00:27:06,121   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:06,121     117 |     struct unary_function
2025-09-08T00:27:06,121         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:06,348   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T00:27:06,349   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:27:06,349      50 |   if (&orig == NULL)
2025-09-08T00:27:06,349         |             ^
2025-09-08T00:27:06,349   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2025-09-08T00:27:06,349      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2025-09-08T00:27:06,349         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:27:06,350   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T00:27:06,350   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:27:06,350      76 |   if (&rhs == NULL)
2025-09-08T00:27:06,350         |            ^
2025-09-08T00:27:06,350   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2025-09-08T00:27:06,351      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2025-09-08T00:27:06,351         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:27:06,757   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T00:27:06,757   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:27:06,757      50 |   if (&orig == NULL)
2025-09-08T00:27:06,757         |   ^~
2025-09-08T00:27:06,758   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T00:27:06,758   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:27:06,758      76 |   if (&rhs == NULL)
2025-09-08T00:27:06,758         |   ^~
2025-09-08T00:27:09,796   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:27:09,797                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:27:09,797                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:27:09,797                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2025-09-08T00:27:09,797   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:09,797      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:09,797         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:09,798   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T00:27:09,798                    from /usr/include/c++/14/vector:68,
2025-09-08T00:27:09,798                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2025-09-08T00:27:09,798   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:09,798     117 |     struct unary_function
2025-09-08T00:27:09,798         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:13,717   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:27:13,717                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:27:13,717                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:27:13,717                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2025-09-08T00:27:13,717   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:13,717      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:13,717         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:13,718   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:27:13,718                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2025-09-08T00:27:13,718                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2025-09-08T00:27:13,718   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:13,718     117 |     struct unary_function
2025-09-08T00:27:13,718         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:13,948   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T00:27:13,948   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:27:13,949      53 |   if (&orig == NULL)
2025-09-08T00:27:13,949         |             ^
2025-09-08T00:27:13,949   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2025-09-08T00:27:13,949      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2025-09-08T00:27:13,949         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:27:13,952   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T00:27:13,952   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:27:13,952      83 |   if (&rhs == NULL)
2025-09-08T00:27:13,952         |            ^
2025-09-08T00:27:13,952   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2025-09-08T00:27:13,952      81 | SBMLUri::operator=(const SBMLUri& rhs)
2025-09-08T00:27:13,952         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T00:27:13,962   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2025-09-08T00:27:13,962   ./base/sbml/packages/comp/util/SBMLUri.cpp:157:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T00:27:13,962     157 |     ptr_fun<int,int>(tolower)); // scheme is icase
2025-09-08T00:27:13,962         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:27:13,962   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T00:27:13,963    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T00:27:13,963         |     ^~~~~~~
2025-09-08T00:27:13,968   ./base/sbml/packages/comp/util/SBMLUri.cpp:181:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T00:27:13,968     181 |      ptr_fun<int,int>(tolower)); // host is icase
2025-09-08T00:27:13,968         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T00:27:13,968   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T00:27:13,968    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T00:27:13,968         |     ^~~~~~~
2025-09-08T00:27:14,449   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T00:27:14,449   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:27:14,449      53 |   if (&orig == NULL)
2025-09-08T00:27:14,449         |   ^~
2025-09-08T00:27:14,450   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T00:27:14,450   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:27:14,450      83 |   if (&rhs == NULL)
2025-09-08T00:27:14,450         |   ^~
2025-09-08T00:27:18,740   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:27:18,740                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:27:18,740                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:27:18,740                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2025-09-08T00:27:18,741                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2025-09-08T00:27:18,741   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:18,741      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:18,741         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:18,741   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:27:18,742                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2025-09-08T00:27:18,742                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2025-09-08T00:27:18,742                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2025-09-08T00:27:18,742   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:18,742     117 |     struct unary_function
2025-09-08T00:27:18,742         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:34,945   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:27:34,945                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:27:34,945                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:27:34,945                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2025-09-08T00:27:34,945                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2025-09-08T00:27:34,945   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:34,946      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:34,946         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:34,946   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:27:34,946                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2025-09-08T00:27:34,946                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2025-09-08T00:27:34,946                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2025-09-08T00:27:34,946   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:34,946     117 |     struct unary_function
2025-09-08T00:27:34,946         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:38,820   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:27:38,820                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:27:38,820                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:27:38,821                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2025-09-08T00:27:38,821                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2025-09-08T00:27:38,821   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:38,821      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:38,821         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:38,821   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:27:38,821                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2025-09-08T00:27:38,821                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2025-09-08T00:27:38,821                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2025-09-08T00:27:38,822   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:38,822     117 |     struct unary_function
2025-09-08T00:27:38,822         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:42,730   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:27:42,730                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:27:42,730                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:27:42,730                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2025-09-08T00:27:42,730   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:42,730      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:42,730         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:42,731   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:27:42,731                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2025-09-08T00:27:42,731   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:42,731     117 |     struct unary_function
2025-09-08T00:27:42,731         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:43,404   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:43,405      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:27:43,405         |                       ^~~~~~~~~~~~~~
2025-09-08T00:27:43,405   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:43,405     117 |     struct unary_function
2025-09-08T00:27:43,405         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:43,569   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:27:43,569   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T00:27:43,569     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T00:27:43,569         |            ^
2025-09-08T00:27:43,570   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2025-09-08T00:27:43,570     325 |   virtual bool visit (const SBase &x)
2025-09-08T00:27:43,570         |                       ~~~~~~~~~~~~~^
2025-09-08T00:27:43,584   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T00:27:43,585   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:27:43,585     481 |   if (&d == NULL) return 0;
2025-09-08T00:27:43,585         |          ^
2025-09-08T00:27:43,585   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2025-09-08T00:27:43,585     479 | CompValidator::validate (const SBMLDocument& d)
2025-09-08T00:27:43,585         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:27:43,598   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T00:27:43,599   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:27:43,599     610 |   if (&filename == NULL) return 0;
2025-09-08T00:27:43,599         |                 ^
2025-09-08T00:27:43,599   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2025-09-08T00:27:43,599     608 | CompValidator::validate (const std::string& filename)
2025-09-08T00:27:43,599         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:27:44,380   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:27:44,380   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:27:44,380     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T00:27:44,380         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:27:44,398   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T00:27:44,398   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:27:44,398     481 |   if (&d == NULL) return 0;
2025-09-08T00:27:44,398         |   ^~
2025-09-08T00:27:44,426   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T00:27:44,426   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:27:44,426     610 |   if (&filename == NULL) return 0;
2025-09-08T00:27:44,426         |   ^~
2025-09-08T00:27:49,640   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:27:49,640                    from ./base//sbml/Model.h:446,
2025-09-08T00:27:49,640                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2025-09-08T00:27:49,641   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:49,641      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:49,641         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:49,641   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:27:49,641                    from ./base//sbml/Model.h:444:
2025-09-08T00:27:49,641   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:49,641     117 |     struct unary_function
2025-09-08T00:27:49,641         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:53,952   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:27:53,952                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:27:53,952                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:27:53,953                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2025-09-08T00:27:53,953   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:53,953      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:53,953         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:53,953   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:27:53,953                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:27:53,953   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:53,953     117 |     struct unary_function
2025-09-08T00:27:53,953         |            ^~~~~~~~~~~~~~
2025-09-08T00:27:58,233   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:27:58,233                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:27:58,233                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:27:58,233                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T00:27:58,233                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2025-09-08T00:27:58,233   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:27:58,233      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:27:58,233         |                           ^~~~~~~~~~~~~~
2025-09-08T00:27:58,234   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:27:58,234                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2025-09-08T00:27:58,234   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:27:58,234     117 |     struct unary_function
2025-09-08T00:27:58,235         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:02,369   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:28:02,369                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:28:02,369                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:28:02,369                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2025-09-08T00:28:02,369   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:02,369      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:02,369         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:02,369   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:02,370                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:28:02,370   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:02,370     117 |     struct unary_function
2025-09-08T00:28:02,370         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:06,186   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:28:06,186                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:28:06,186                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:28:06,186                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2025-09-08T00:28:06,187   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:06,187      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:06,187         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:06,187   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:06,187                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:28:06,187   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:06,187     117 |     struct unary_function
2025-09-08T00:28:06,187         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:10,167   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:10,167                    from ./base//sbml/Model.h:446,
2025-09-08T00:28:10,167                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2025-09-08T00:28:10,167   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:10,167      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:10,167         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:10,167   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:10,168                    from ./base//sbml/Model.h:444:
2025-09-08T00:28:10,168   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:10,168     117 |     struct unary_function
2025-09-08T00:28:10,168         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:17,546   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:17,547                    from ./base//sbml/Model.h:446,
2025-09-08T00:28:17,547                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2025-09-08T00:28:17,547   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:17,547      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:17,547         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:17,547   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:17,547                    from ./base//sbml/Model.h:444:
2025-09-08T00:28:17,547   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:17,547     117 |     struct unary_function
2025-09-08T00:28:17,548         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:21,999   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:21,999                    from ./base//sbml/Model.h:446,
2025-09-08T00:28:21,999                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2025-09-08T00:28:21,999   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:21,999      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:21,999         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:22,000   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:22,000                    from ./base//sbml/Model.h:444:
2025-09-08T00:28:22,000   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:22,000     117 |     struct unary_function
2025-09-08T00:28:22,000         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:29,406   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:28:29,406                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:28:29,406                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:28:29,406                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T00:28:29,406                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2025-09-08T00:28:29,406                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2025-09-08T00:28:29,406   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:29,406      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:29,407         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:29,407   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:29,407                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:28:29,407                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:28:29,407                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:28:29,408                    from ./base//sbml/SBase.h:145,
2025-09-08T00:28:29,408                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2025-09-08T00:28:29,408   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:29,408     117 |     struct unary_function
2025-09-08T00:28:29,408         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:34,306   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:34,307                    from ./base//sbml/Model.h:446,
2025-09-08T00:28:34,307                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2025-09-08T00:28:34,307   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:34,307      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:34,307         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:34,307   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:34,308                    from ./base//sbml/Model.h:444:
2025-09-08T00:28:34,308   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:34,308     117 |     struct unary_function
2025-09-08T00:28:34,308         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:38,414   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:38,414                    from ./base//sbml/Model.h:446,
2025-09-08T00:28:38,414                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2025-09-08T00:28:38,414   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:38,414      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:38,414         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:38,414   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:38,415                    from ./base//sbml/Model.h:444:
2025-09-08T00:28:38,415   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:38,415     117 |     struct unary_function
2025-09-08T00:28:38,415         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:42,424   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:42,424                    from ./base//sbml/Model.h:446,
2025-09-08T00:28:42,425                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2025-09-08T00:28:42,425   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:42,425      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:42,425         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:42,425   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:42,425                    from ./base//sbml/Model.h:444:
2025-09-08T00:28:42,425   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:42,425     117 |     struct unary_function
2025-09-08T00:28:42,425         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:46,431   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:46,431                    from ./base//sbml/Model.h:446,
2025-09-08T00:28:46,431                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2025-09-08T00:28:46,431   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:46,431      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:46,431         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:46,432   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:46,432                    from ./base//sbml/Model.h:444:
2025-09-08T00:28:46,432   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:46,432     117 |     struct unary_function
2025-09-08T00:28:46,432         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:50,563   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:50,563                    from ./base//sbml/Model.h:446,
2025-09-08T00:28:50,563                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2025-09-08T00:28:50,563   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:50,564      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:50,564         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:50,564   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:50,564                    from ./base//sbml/Model.h:444:
2025-09-08T00:28:50,564   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:50,564     117 |     struct unary_function
2025-09-08T00:28:50,564         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:54,857   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:54,857                    from ./base//sbml/Model.h:446,
2025-09-08T00:28:54,857                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2025-09-08T00:28:54,857   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:54,857      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:54,857         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:54,857   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:54,857                    from ./base//sbml/Model.h:444:
2025-09-08T00:28:54,858   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:54,858     117 |     struct unary_function
2025-09-08T00:28:54,858         |            ^~~~~~~~~~~~~~
2025-09-08T00:28:59,957   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:28:59,957                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:28:59,957                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:28:59,957                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:28:59,957                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:28:59,957                    from ./base//sbml/extension/SBMLExtensionRegister.h:42,
2025-09-08T00:28:59,957                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2025-09-08T00:28:59,958   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:28:59,958      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:28:59,958         |                           ^~~~~~~~~~~~~~
2025-09-08T00:28:59,958   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:28:59,958                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:28:59,958                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:28:59,958                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T00:28:59,958   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:28:59,958     117 |     struct unary_function
2025-09-08T00:28:59,959         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:00,299   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:29:00,299                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T00:29:00,299                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2025-09-08T00:29:00,299   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:00,300     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:00,300         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:29:00,300   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:00,300     117 |     struct unary_function
2025-09-08T00:29:00,300         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:00,306   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:00,306     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:00,306         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:29:00,306   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:00,307     117 |     struct unary_function
2025-09-08T00:29:00,307         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:00,322   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T00:29:00,322   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:00,322     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:00,322         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:29:00,322   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:00,322     117 |     struct unary_function
2025-09-08T00:29:00,323         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:04,915   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:29:04,915                    from ./base//sbml/Model.h:446,
2025-09-08T00:29:04,916                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42,
2025-09-08T00:29:04,916                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2025-09-08T00:29:04,916   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:04,916      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:29:04,916         |                           ^~~~~~~~~~~~~~
2025-09-08T00:29:04,916   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:29:04,916                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:29:04,916                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:29:04,916                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:41:
2025-09-08T00:29:04,917   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:04,917     117 |     struct unary_function
2025-09-08T00:29:04,917         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:05,308   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:29:05,309                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47:
2025-09-08T00:29:05,309   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:05,309     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:05,309         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:29:05,309   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:05,309     117 |     struct unary_function
2025-09-08T00:29:05,309         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:05,315   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:05,316     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:05,316         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:29:05,316   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:05,316     117 |     struct unary_function
2025-09-08T00:29:05,316         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:05,331   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T00:29:05,331   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:05,331     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:05,331         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:29:05,331   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:05,331     117 |     struct unary_function
2025-09-08T00:29:05,332         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:10,977   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:29:10,978                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:29:10,978                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:29:10,978                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2025-09-08T00:29:10,978                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:48,
2025-09-08T00:29:10,978                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2025-09-08T00:29:10,978   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:10,978      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:29:10,979         |                           ^~~~~~~~~~~~~~
2025-09-08T00:29:10,979   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:29:10,979                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:29:10,979                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:29:10,979                    from /usr/include/c++/14/ios:44,
2025-09-08T00:29:10,979                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:29:10,979                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2025-09-08T00:29:10,979   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:10,979     117 |     struct unary_function
2025-09-08T00:29:10,979         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:14,926   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:29:14,926                    from ./base//sbml/Model.h:446,
2025-09-08T00:29:14,926                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44,
2025-09-08T00:29:14,927                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2025-09-08T00:29:14,927   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:14,927      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:29:14,927         |                           ^~~~~~~~~~~~~~
2025-09-08T00:29:14,927   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:29:14,927                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:29:14,927                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:29:14,927                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:43:
2025-09-08T00:29:14,927   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:14,928     117 |     struct unary_function
2025-09-08T00:29:14,928         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:15,304   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:29:15,304                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:49:
2025-09-08T00:29:15,305   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:15,305     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:15,305         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:29:15,305   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:15,305     117 |     struct unary_function
2025-09-08T00:29:15,305         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:15,311   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:15,311     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:15,312         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:29:15,312   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:15,312     117 |     struct unary_function
2025-09-08T00:29:15,312         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:15,327   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2025-09-08T00:29:15,327   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:15,327     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:15,327         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:29:15,327   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:15,327     117 |     struct unary_function
2025-09-08T00:29:15,328         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:20,723   In file included from ./base//sbml/packages/fbc/sbml/Association.h:50,
2025-09-08T00:29:20,724                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2025-09-08T00:29:20,724   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:20,724      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:29:20,724         |                           ^~~~~~~~~~~~~~
2025-09-08T00:29:20,725   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:29:20,725                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:29:20,725                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:29:20,725                    from /usr/include/c++/14/ios:44,
2025-09-08T00:29:20,725                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:29:20,725                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:29:20,725                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2025-09-08T00:29:20,725   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:20,726     117 |     struct unary_function
2025-09-08T00:29:20,726         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:28,566   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:69,
2025-09-08T00:29:28,567                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2025-09-08T00:29:28,567   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:28,567      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:29:28,567         |                           ^~~~~~~~~~~~~~
2025-09-08T00:29:28,567   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:29:28,568                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:29:28,568                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:29:28,568                    from /usr/include/c++/14/ios:44,
2025-09-08T00:29:28,568                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:29:28,568                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:29:28,568                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2025-09-08T00:29:28,568   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:28,568     117 |     struct unary_function
2025-09-08T00:29:28,568         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:35,852   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:48,
2025-09-08T00:29:35,852                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2025-09-08T00:29:35,852   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:35,853      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:29:35,853         |                           ^~~~~~~~~~~~~~
2025-09-08T00:29:35,853   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:29:35,853                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:29:35,853                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:29:35,853                    from /usr/include/c++/14/ios:44,
2025-09-08T00:29:35,853                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:29:35,853                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:29:35,853                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2025-09-08T00:29:35,854   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:35,854     117 |     struct unary_function
2025-09-08T00:29:35,854         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:36,367   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:36,367     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:36,367         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:29:36,367   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:36,367     117 |     struct unary_function
2025-09-08T00:29:36,367         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:42,547   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:46,
2025-09-08T00:29:42,547                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2025-09-08T00:29:42,547   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:42,547      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:29:42,547         |                           ^~~~~~~~~~~~~~
2025-09-08T00:29:42,547   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:29:42,547                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:29:42,547                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:29:42,548                    from /usr/include/c++/14/ios:44,
2025-09-08T00:29:42,548                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:29:42,548                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:29:42,548                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2025-09-08T00:29:42,548   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:42,548     117 |     struct unary_function
2025-09-08T00:29:42,548         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:43,071   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:43,071     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:43,071         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:29:43,071   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:43,071     117 |     struct unary_function
2025-09-08T00:29:43,072         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:49,039   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:66,
2025-09-08T00:29:49,039                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2025-09-08T00:29:49,039   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:49,039      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:29:49,040         |                           ^~~~~~~~~~~~~~
2025-09-08T00:29:49,040   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:29:49,040                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:29:49,040                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:29:49,040                    from /usr/include/c++/14/ios:44,
2025-09-08T00:29:49,040                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:29:49,040                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:29:49,040                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2025-09-08T00:29:49,040   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:49,041     117 |     struct unary_function
2025-09-08T00:29:49,041         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:49,554   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68:
2025-09-08T00:29:49,554   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:49,554     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:49,554         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:29:49,555   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:49,555     117 |     struct unary_function
2025-09-08T00:29:49,555         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:49,561   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:49,561     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:49,561         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:29:49,561   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:49,561     117 |     struct unary_function
2025-09-08T00:29:49,562         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:56,794   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:29:56,794                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:29:56,794                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:29:56,794                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:29:56,794                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:29:56,795                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35,
2025-09-08T00:29:56,795                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2025-09-08T00:29:56,795   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:56,795      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:29:56,795         |                           ^~~~~~~~~~~~~~
2025-09-08T00:29:56,795   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:29:56,795                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:29:56,795                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:29:56,795                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:34:
2025-09-08T00:29:56,796   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:56,796     117 |     struct unary_function
2025-09-08T00:29:56,796         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:57,099   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:29:57,100                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T00:29:57,100                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T00:29:57,100                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2025-09-08T00:29:57,100   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:57,100     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:57,100         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:29:57,100   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:57,100     117 |     struct unary_function
2025-09-08T00:29:57,101         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:57,106   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:57,107     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:57,107         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:29:57,107   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:57,107     117 |     struct unary_function
2025-09-08T00:29:57,107         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:57,122   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T00:29:57,122   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:29:57,122     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:29:57,123         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:29:57,123   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:29:57,123     117 |     struct unary_function
2025-09-08T00:29:57,123         |            ^~~~~~~~~~~~~~
2025-09-08T00:29:57,131   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:29:57,131   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:98:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:29:57,132      98 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T00:29:57,132         |              ^
2025-09-08T00:29:57,132   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:96:70: note: ‘props’ declared here
2025-09-08T00:29:57,132      96 |   CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:29:57,132         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:29:57,837   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:98:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:29:57,837      98 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T00:29:57,837         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:30:04,210   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:30:04,210                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:30:04,210                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:30:04,210                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:30:04,210                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T00:30:04,210                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35,
2025-09-08T00:30:04,210                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2025-09-08T00:30:04,210   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:04,211      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:04,211         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:04,211   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:04,212                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:30:04,212                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:30:04,212                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:34:
2025-09-08T00:30:04,212   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:04,212     117 |     struct unary_function
2025-09-08T00:30:04,212         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:04,518   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:30:04,518                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T00:30:04,518                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T00:30:04,518                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2025-09-08T00:30:04,518   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:04,518     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:04,518         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:30:04,518   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:04,519     117 |     struct unary_function
2025-09-08T00:30:04,519         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:04,526   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:04,526     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:04,526         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:30:04,526   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:04,526     117 |     struct unary_function
2025-09-08T00:30:04,526         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:04,542   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T00:30:04,542   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:04,542     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:04,542         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:30:04,542   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:04,543     117 |     struct unary_function
2025-09-08T00:30:04,543         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:04,552   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T00:30:04,552   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T00:30:04,552      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T00:30:04,552         |              ^
2025-09-08T00:30:04,553   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:97:70: note: ‘props’ declared here
2025-09-08T00:30:04,553      97 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T00:30:04,553         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:30:05,244   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:30:05,244      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T00:30:05,244         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:30:10,519   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:30:10,519                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:30:10,520                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:30:10,520                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2025-09-08T00:30:10,520                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2025-09-08T00:30:10,520   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:10,520      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:10,520         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:10,520   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:10,520                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2025-09-08T00:30:10,520                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2025-09-08T00:30:10,521                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2025-09-08T00:30:10,521   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:10,521     117 |     struct unary_function
2025-09-08T00:30:10,521         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:11,064   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:30:11,065                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T00:30:11,065   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:11,065     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:11,065         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:30:11,065   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:11,065     117 |     struct unary_function
2025-09-08T00:30:11,065         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:11,071   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:11,072     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:11,072         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:30:11,072   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:11,072     117 |     struct unary_function
2025-09-08T00:30:11,072         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:14,636   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:30:14,636                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:30:14,636                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:30:14,636                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2025-09-08T00:30:14,636                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2025-09-08T00:30:14,636   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:14,637      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:14,637         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:14,637   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:14,637                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2025-09-08T00:30:14,637                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2025-09-08T00:30:14,637                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2025-09-08T00:30:14,637   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:14,637     117 |     struct unary_function
2025-09-08T00:30:14,637         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:18,211   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:30:18,212                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:30:18,212                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:30:18,212                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2025-09-08T00:30:18,212   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:18,212      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:18,212         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:18,212   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:30:18,212                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2025-09-08T00:30:18,212   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:18,213     117 |     struct unary_function
2025-09-08T00:30:18,213         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:18,757   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:30:18,757                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T00:30:18,758                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T00:30:18,758                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2025-09-08T00:30:18,758   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:18,758     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:18,758         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:30:18,758   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:18,758     117 |     struct unary_function
2025-09-08T00:30:18,758         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:18,778   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:18,778     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:18,778         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:30:18,778   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:18,778     117 |     struct unary_function
2025-09-08T00:30:18,778         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:18,793   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T00:30:18,793   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:18,794     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:18,794         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:30:18,794   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:18,794     117 |     struct unary_function
2025-09-08T00:30:18,794         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:18,799   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:18,799      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:30:18,799         |                       ^~~~~~~~~~~~~~
2025-09-08T00:30:18,800   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:18,800     117 |     struct unary_function
2025-09-08T00:30:18,800         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:18,926   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:30:18,926   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T00:30:18,927     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T00:30:18,927         |            ^
2025-09-08T00:30:18,927   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2025-09-08T00:30:18,927     288 |   virtual bool visit (const SBase &x)
2025-09-08T00:30:18,927         |                       ~~~~~~~~~~~~~^
2025-09-08T00:30:18,938   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T00:30:18,938   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:30:18,938     383 |   if (&d == NULL) return 0;
2025-09-08T00:30:18,938         |          ^
2025-09-08T00:30:18,938   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2025-09-08T00:30:18,939     381 | FbcValidator::validate (const SBMLDocument& d)
2025-09-08T00:30:18,939         |                         ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:30:18,940   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T00:30:18,940   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:30:18,940     413 |   if (&filename == NULL) return 0;
2025-09-08T00:30:18,940         |                 ^
2025-09-08T00:30:18,940   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2025-09-08T00:30:18,940     411 | FbcValidator::validate (const std::string& filename)
2025-09-08T00:30:18,940         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:30:19,637   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T00:30:19,637   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:30:19,637     383 |   if (&d == NULL) return 0;
2025-09-08T00:30:19,637         |   ^~
2025-09-08T00:30:19,647   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:30:19,647   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:30:19,647     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T00:30:19,647         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:30:19,658   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T00:30:19,659   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:30:19,659     413 |   if (&filename == NULL) return 0;
2025-09-08T00:30:19,659         |   ^~
2025-09-08T00:30:23,490   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:30:23,490                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:30:23,490                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:30:23,490                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2025-09-08T00:30:23,490   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:23,490      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:23,491         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:23,491   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:23,491                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:30:23,491   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:23,491     117 |     struct unary_function
2025-09-08T00:30:23,491         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:24,025   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:30:24,026                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T00:30:24,026   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:24,026     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:24,026         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:30:24,026   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:24,026     117 |     struct unary_function
2025-09-08T00:30:24,026         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:24,032   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:24,033     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:24,033         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:30:24,033   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:24,033     117 |     struct unary_function
2025-09-08T00:30:24,033         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:27,085   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:30:27,085                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:30:27,085                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:30:27,086                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2025-09-08T00:30:27,086   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:27,086      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:27,086         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:27,086   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:27,086                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:30:27,086   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:27,086     117 |     struct unary_function
2025-09-08T00:30:27,086         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:30,740   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:30:30,741                    from ./base//sbml/Model.h:446,
2025-09-08T00:30:30,741                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2025-09-08T00:30:30,741   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:30,741      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:30,741         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:30,741   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:30,741                    from ./base//sbml/Model.h:444:
2025-09-08T00:30:30,742   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:30,742     117 |     struct unary_function
2025-09-08T00:30:30,742         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:31,187   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:30:31,187                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T00:30:31,187                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2025-09-08T00:30:31,187   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:31,187     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:31,187         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:30:31,187   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:31,187     117 |     struct unary_function
2025-09-08T00:30:31,188         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:31,194   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:31,194     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:31,194         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:30:31,194   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:31,194     117 |     struct unary_function
2025-09-08T00:30:31,194         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:31,209   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T00:30:31,209   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:31,209     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:31,210         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:30:31,210   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:31,210     117 |     struct unary_function
2025-09-08T00:30:31,210         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:34,771   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:30:34,771                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:30:34,771                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:30:34,771                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2025-09-08T00:30:34,771                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2025-09-08T00:30:34,772   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:34,772      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:34,772         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:34,772   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:34,772                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2025-09-08T00:30:34,772   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:34,772     117 |     struct unary_function
2025-09-08T00:30:34,772         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:35,244   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T00:30:35,244                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T00:30:35,244                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2025-09-08T00:30:35,244   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:35,244     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:35,245         |                                          ^~~~~~~~~~~~~~
2025-09-08T00:30:35,245   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:35,245     117 |     struct unary_function
2025-09-08T00:30:35,245         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:35,251   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:35,251     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:35,251         |                                      ^~~~~~~~~~~~~~
2025-09-08T00:30:35,251   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:35,251     117 |     struct unary_function
2025-09-08T00:30:35,252         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:35,280   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T00:30:35,280   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:35,280     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T00:30:35,280         |                                            ^~~~~~~~~~~~~~
2025-09-08T00:30:35,281   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:35,281     117 |     struct unary_function
2025-09-08T00:30:35,281         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:39,889   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:30:39,889                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:30:39,890                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:30:39,890                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:30:39,890                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:30:39,890                    from ./base//sbml/extension/SBMLExtensionRegister.h:42,
2025-09-08T00:30:39,890                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2025-09-08T00:30:39,890   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:39,890      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:39,890         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:39,891   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:39,891                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:30:39,891                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:30:39,891                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T00:30:39,891   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:39,891     117 |     struct unary_function
2025-09-08T00:30:39,892         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:40,221   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:30:40,221                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:30:40,221                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T00:30:40,221                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:41:
2025-09-08T00:30:40,221   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:40,221     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:40,222         |                             ^~~~~~~~
2025-09-08T00:30:40,222   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:30:40,222     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:30:40,222         |                              ^~~~~~~~
2025-09-08T00:30:40,225   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:40,225     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:40,225         |                             ^~~~~~~~
2025-09-08T00:30:40,225   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:30:40,225   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:30:40,225     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:30:40,226         |                          ^~~~~~~~
2025-09-08T00:30:40,235   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:40,235     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:40,235         |                             ^~~~~~~~
2025-09-08T00:30:40,235   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:30:40,235                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:30:40,236   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:30:40,236     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:30:40,236         |                                   ^~~~~~~~
2025-09-08T00:30:40,241   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:40,241     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:40,241         |                             ^~~~~~~~
2025-09-08T00:30:40,241   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:30:40,242     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:30:40,242         |                           ^~~~~~~~
2025-09-08T00:30:40,245   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:40,245     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:40,245         |                             ^~~~~~~~
2025-09-08T00:30:40,245   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:30:40,246   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:30:40,246     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:30:40,246         |                      ^~~~~~~~
2025-09-08T00:30:45,176   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:30:45,176                    from ./base//sbml/Model.h:446,
2025-09-08T00:30:45,176                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49,
2025-09-08T00:30:45,176                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2025-09-08T00:30:45,176   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:45,176      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:45,176         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:45,177   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:45,177                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:30:45,177                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:30:45,177                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:48:
2025-09-08T00:30:45,178   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:45,178     117 |     struct unary_function
2025-09-08T00:30:45,178         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:45,577   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:30:45,577                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:30:45,577                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54:
2025-09-08T00:30:45,577   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:45,578     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:45,578         |                             ^~~~~~~~
2025-09-08T00:30:45,578   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:30:45,578     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:30:45,578         |                              ^~~~~~~~
2025-09-08T00:30:45,581   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:45,581     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:45,581         |                             ^~~~~~~~
2025-09-08T00:30:45,581   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:30:45,581   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:30:45,582     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:30:45,582         |                          ^~~~~~~~
2025-09-08T00:30:45,591   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:45,591     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:45,591         |                             ^~~~~~~~
2025-09-08T00:30:45,591   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:30:45,592                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:30:45,592   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:30:45,592     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:30:45,592         |                                   ^~~~~~~~
2025-09-08T00:30:45,597   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:45,597     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:45,597         |                             ^~~~~~~~
2025-09-08T00:30:45,597   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:30:45,598     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:30:45,598         |                           ^~~~~~~~
2025-09-08T00:30:45,601   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:45,601     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:45,601         |                             ^~~~~~~~
2025-09-08T00:30:45,601   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:30:45,602   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:30:45,602     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:30:45,602         |                      ^~~~~~~~
2025-09-08T00:30:49,893   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:30:49,893                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:30:49,894                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:30:49,894                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2025-09-08T00:30:49,894                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:58,
2025-09-08T00:30:49,894                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2025-09-08T00:30:49,894   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:49,894      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:49,894         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:49,895   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:49,895                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:30:49,895                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:30:49,895                    from ./base//sbml/extension/SBMLDocumentPlugin.h:51:
2025-09-08T00:30:49,895   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:49,895     117 |     struct unary_function
2025-09-08T00:30:49,895         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:54,317   In file included from ./base//sbml/SpeciesReference.h:260,
2025-09-08T00:30:54,317                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45,
2025-09-08T00:30:54,317                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2025-09-08T00:30:54,317   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:54,317      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:54,317         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:54,318   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:54,318                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:30:54,318                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:30:54,318                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:44:
2025-09-08T00:30:54,318   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:54,318     117 |     struct unary_function
2025-09-08T00:30:54,319         |            ^~~~~~~~~~~~~~
2025-09-08T00:30:54,867   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:30:54,867                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:30:54,868                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:50:
2025-09-08T00:30:54,868   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:54,868     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:54,868         |                             ^~~~~~~~
2025-09-08T00:30:54,868   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:30:54,868     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:30:54,868         |                              ^~~~~~~~
2025-09-08T00:30:54,871   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:54,871     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:54,871         |                             ^~~~~~~~
2025-09-08T00:30:54,872   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:30:54,872   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:30:54,872     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:30:54,872         |                          ^~~~~~~~
2025-09-08T00:30:54,881   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:54,881     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:54,881         |                             ^~~~~~~~
2025-09-08T00:30:54,882   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:30:54,882                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:30:54,882   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:30:54,882     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:30:54,882         |                                   ^~~~~~~~
2025-09-08T00:30:54,887   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:54,887     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:54,887         |                             ^~~~~~~~
2025-09-08T00:30:54,888   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:30:54,888     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:30:54,888         |                           ^~~~~~~~
2025-09-08T00:30:54,891   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:30:54,891     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:30:54,891         |                             ^~~~~~~~
2025-09-08T00:30:54,892   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:30:54,892   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:30:54,892     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:30:54,892         |                      ^~~~~~~~
2025-09-08T00:30:58,516   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:30:58,516                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:30:58,516                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:30:58,516                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:30:58,516                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:30:58,516                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:30:58,516                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:30:58,516                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:30:58,517                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2025-09-08T00:30:58,517   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:30:58,517      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:30:58,517         |                           ^~~~~~~~~~~~~~
2025-09-08T00:30:58,518   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:30:58,518                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2025-09-08T00:30:58,518   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:30:58,518     117 |     struct unary_function
2025-09-08T00:30:58,518         |            ^~~~~~~~~~~~~~
2025-09-08T00:31:04,752   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:31:04,752                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:31:04,752                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:31:04,753                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:31:04,753                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:31:04,753                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:31:04,753                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:31:04,753                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:31:04,753                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T00:31:04,753                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:31:04,753                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2025-09-08T00:31:04,753   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:31:04,753      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:31:04,753         |                           ^~~~~~~~~~~~~~
2025-09-08T00:31:04,754   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:31:04,754                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2025-09-08T00:31:04,755   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:31:04,755     117 |     struct unary_function
2025-09-08T00:31:04,755         |            ^~~~~~~~~~~~~~
2025-09-08T00:31:05,078   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:05,078     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:05,078         |                             ^~~~~~~~
2025-09-08T00:31:05,078   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:31:05,079     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:31:05,079         |                              ^~~~~~~~
2025-09-08T00:31:05,081   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:05,081     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:05,081         |                             ^~~~~~~~
2025-09-08T00:31:05,082   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T00:31:05,082                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:33:
2025-09-08T00:31:05,082   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:31:05,082     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:31:05,082         |                          ^~~~~~~~
2025-09-08T00:31:05,091   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:05,092     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:05,092         |                             ^~~~~~~~
2025-09-08T00:31:05,092   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:31:05,092                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:31:05,092   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:31:05,092     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:31:05,092         |                                   ^~~~~~~~
2025-09-08T00:31:05,097   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:05,098     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:05,098         |                             ^~~~~~~~
2025-09-08T00:31:05,098   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:31:05,098     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:31:05,098         |                           ^~~~~~~~
2025-09-08T00:31:05,101   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:05,102     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:05,102         |                             ^~~~~~~~
2025-09-08T00:31:05,102   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:31:05,102   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:31:05,102     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:31:05,102         |                      ^~~~~~~~
2025-09-08T00:31:10,450   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:31:10,451                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:31:10,451                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:31:10,451                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:31:10,451                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:31:10,451                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:31:10,451                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:31:10,451                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2025-09-08T00:31:10,451                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:55,
2025-09-08T00:31:10,451                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2025-09-08T00:31:10,451   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:31:10,451      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:31:10,452         |                           ^~~~~~~~~~~~~~
2025-09-08T00:31:10,452   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:31:10,453                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:53:
2025-09-08T00:31:10,453   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:31:10,453     117 |     struct unary_function
2025-09-08T00:31:10,453         |            ^~~~~~~~~~~~~~
2025-09-08T00:31:10,746   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:10,746     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:31:10,746         |                        ^~~~~~~~
2025-09-08T00:31:10,746   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:31:10,746     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:31:10,746         |                        ^~~~~~~~
2025-09-08T00:31:15,451   In file included from ./base//sbml/packages/layout/sbml/Curve.h:68,
2025-09-08T00:31:15,451                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2025-09-08T00:31:15,451   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:31:15,451      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:31:15,451         |                           ^~~~~~~~~~~~~~
2025-09-08T00:31:15,452   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:31:15,452                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:31:15,453                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:31:15,453                    from /usr/include/c++/14/ios:44,
2025-09-08T00:31:15,453                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:31:15,453                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:31:15,453                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2025-09-08T00:31:15,453   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:31:15,453     117 |     struct unary_function
2025-09-08T00:31:15,453         |            ^~~~~~~~~~~~~~
2025-09-08T00:31:16,046   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69:
2025-09-08T00:31:16,046   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:16,046     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:31:16,046         |                        ^~~~~~~~
2025-09-08T00:31:16,047   In file included from ./base/sbml/packages/layout/sbml/Curve.cpp:35:
2025-09-08T00:31:16,047   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:31:16,047     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:31:16,047         |                        ^~~~~~~~
2025-09-08T00:31:21,671   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:31:21,672                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:31:21,672                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:31:21,672                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:31:21,672                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:31:21,672                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:31:21,672                    from ./base//sbml/packages/layout/sbml/Dimensions.h:56,
2025-09-08T00:31:21,672                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2025-09-08T00:31:21,672   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:31:21,672      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:31:21,673         |                           ^~~~~~~~~~~~~~
2025-09-08T00:31:21,673   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:31:21,673                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:31:21,673                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:31:21,674                    from /usr/include/c++/14/ios:44,
2025-09-08T00:31:21,674                    from /usr/include/c++/14/istream:40,
2025-09-08T00:31:21,674                    from /usr/include/c++/14/sstream:40,
2025-09-08T00:31:21,674                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2025-09-08T00:31:21,674   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:31:21,674     117 |     struct unary_function
2025-09-08T00:31:21,674         |            ^~~~~~~~~~~~~~
2025-09-08T00:31:27,219   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:54,
2025-09-08T00:31:27,219                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2025-09-08T00:31:27,219   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:31:27,219      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:31:27,219         |                           ^~~~~~~~~~~~~~
2025-09-08T00:31:27,220   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:31:27,220                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:52:
2025-09-08T00:31:27,220   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:31:27,220     117 |     struct unary_function
2025-09-08T00:31:27,220         |            ^~~~~~~~~~~~~~
2025-09-08T00:31:27,838   In file included from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:54,
2025-09-08T00:31:27,838                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:56:
2025-09-08T00:31:27,838   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:27,838     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:27,838         |                             ^~~~~~~~
2025-09-08T00:31:27,838   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:31:27,839     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:31:27,839         |                            ^~~~~~~~
2025-09-08T00:31:27,844   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:27,844     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:27,844         |                             ^~~~~~~~
2025-09-08T00:31:27,845   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:31:27,845     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:31:27,845         |                          ^~~~~~~~
2025-09-08T00:31:27,848   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:27,848     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:27,848         |                             ^~~~~~~~
2025-09-08T00:31:27,848   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:34:
2025-09-08T00:31:27,849   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:31:27,849     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:31:27,849         |                          ^~~~~~~~
2025-09-08T00:31:27,851   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:27,852     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:27,852         |                             ^~~~~~~~
2025-09-08T00:31:27,852   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:35:
2025-09-08T00:31:27,852   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:31:27,852     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:31:27,852         |                      ^~~~~~~~
2025-09-08T00:31:27,855   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:27,855     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:27,855         |                             ^~~~~~~~
2025-09-08T00:31:27,856   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:36:
2025-09-08T00:31:27,856   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:31:27,856     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:31:27,856         |                              ^~~~~~~~
2025-09-08T00:31:27,859   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:27,860     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:27,860         |                             ^~~~~~~~
2025-09-08T00:31:27,860   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:31:27,860                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:37:
2025-09-08T00:31:27,860   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:31:27,861     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:31:27,861         |                                   ^~~~~~~~
2025-09-08T00:31:27,866   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:27,866     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:27,866         |                             ^~~~~~~~
2025-09-08T00:31:27,866   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:31:27,866     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:31:27,867         |                           ^~~~~~~~
2025-09-08T00:31:35,204   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:31:35,204                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:31:35,205                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:31:35,205                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:31:35,205                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:31:35,205                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:31:35,205                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:31:35,205                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:31:35,205                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T00:31:35,205                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T00:31:35,205                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2025-09-08T00:31:35,205   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:31:35,205      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:31:35,206         |                           ^~~~~~~~~~~~~~
2025-09-08T00:31:35,206   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:31:35,207                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:31:35,207                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:31:35,207                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:31:35,207                    from ./base//sbml/SBase.h:145,
2025-09-08T00:31:35,207                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T00:31:35,207   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:31:35,207     117 |     struct unary_function
2025-09-08T00:31:35,207         |            ^~~~~~~~~~~~~~
2025-09-08T00:31:35,523   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:35,523     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:35,523         |                             ^~~~~~~~
2025-09-08T00:31:35,524   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:31:35,524                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T00:31:35,524                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T00:31:35,524                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:41:
2025-09-08T00:31:35,524   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:31:35,524     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:31:35,524         |                              ^~~~~~~~
2025-09-08T00:31:35,527   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:35,527     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:35,527         |                             ^~~~~~~~
2025-09-08T00:31:35,527   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:31:35,528   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:31:35,528     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:31:35,528         |                          ^~~~~~~~
2025-09-08T00:31:35,537   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:35,537     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:35,537         |                             ^~~~~~~~
2025-09-08T00:31:35,538   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:31:35,538                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:31:35,538   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:31:35,538     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:31:35,538         |                                   ^~~~~~~~
2025-09-08T00:31:35,543   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:35,543     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:35,543         |                             ^~~~~~~~
2025-09-08T00:31:35,544   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:31:35,544     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:31:35,544         |                           ^~~~~~~~
2025-09-08T00:31:35,547   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:35,547     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:35,547         |                             ^~~~~~~~
2025-09-08T00:31:35,548   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:31:35,548   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:31:35,548     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:31:35,548         |                      ^~~~~~~~
2025-09-08T00:31:35,569   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T00:31:35,569                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T00:31:35,569   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:35,569     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:31:35,569         |                        ^~~~~~~~
2025-09-08T00:31:35,569   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T00:31:35,569   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:31:35,570     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:31:35,570         |                        ^~~~~~~~
2025-09-08T00:31:35,573   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:35,573     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:35,573         |                             ^~~~~~~~
2025-09-08T00:31:35,574   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T00:31:35,574   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:31:35,574     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:31:35,574         |                            ^~~~~~~~
2025-09-08T00:31:35,579   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:35,580     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:35,580         |                             ^~~~~~~~
2025-09-08T00:31:35,580   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T00:31:35,580   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:31:35,580     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:31:35,580         |                          ^~~~~~~~
2025-09-08T00:31:35,606   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T00:31:35,606   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-08T00:31:35,606     373 |   if (&id != NULL && id.empty())
2025-09-08T00:31:35,606         |           ^
2025-09-08T00:31:35,606   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2025-09-08T00:31:35,606     371 | int GraphicalObject::setId(const std::string& id)
2025-09-08T00:31:35,606         |                            ~~~~~~~~~~~~~~~~~~~^~
2025-09-08T00:31:35,608   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T00:31:35,608   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T00:31:35,608     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T00:31:35,608         |               ^
2025-09-08T00:31:35,609   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2025-09-08T00:31:35,609     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2025-09-08T00:31:35,609         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:31:36,167   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T00:31:36,167   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:31:36,168     373 |   if (&id != NULL && id.empty())
2025-09-08T00:31:36,168         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2025-09-08T00:31:36,168   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T00:31:36,169   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:31:36,169     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T00:31:36,169         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2025-09-08T00:31:44,186   In file included from ./base//sbml/packages/layout/sbml/Layout.h:57,
2025-09-08T00:31:44,186                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2025-09-08T00:31:44,186   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:31:44,187      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:31:44,187         |                           ^~~~~~~~~~~~~~
2025-09-08T00:31:44,187   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:31:44,188                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:31:44,188                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:31:44,188                    from /usr/include/c++/14/ios:44,
2025-09-08T00:31:44,188                    from /usr/include/c++/14/ostream:40,
2025-09-08T00:31:44,188                    from /usr/include/c++/14/iostream:41,
2025-09-08T00:31:44,188                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2025-09-08T00:31:44,188   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:31:44,188     117 |     struct unary_function
2025-09-08T00:31:44,188         |            ^~~~~~~~~~~~~~
2025-09-08T00:31:44,776   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:31:44,776                    from ./base//sbml/packages/layout/sbml/Layout.h:59:
2025-09-08T00:31:44,777   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:44,777     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:44,777         |                             ^~~~~~~~
2025-09-08T00:31:44,777   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:31:44,777     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:31:44,777         |                              ^~~~~~~~
2025-09-08T00:31:44,780   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:44,780     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:44,780         |                             ^~~~~~~~
2025-09-08T00:31:44,780   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:31:44,781   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:31:44,781     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:31:44,781         |                          ^~~~~~~~
2025-09-08T00:31:44,790   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:44,790     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:44,790         |                             ^~~~~~~~
2025-09-08T00:31:44,790   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:31:44,791                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:31:44,791   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:31:44,791     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:31:44,791         |                                   ^~~~~~~~
2025-09-08T00:31:44,796   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:44,796     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:44,796         |                             ^~~~~~~~
2025-09-08T00:31:44,797   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:31:44,797     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:31:44,797         |                           ^~~~~~~~
2025-09-08T00:31:44,800   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:44,800     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:44,800         |                             ^~~~~~~~
2025-09-08T00:31:44,801   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:31:44,801   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:31:44,801     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:31:44,801         |                      ^~~~~~~~
2025-09-08T00:31:44,817   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:44,817     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:44,817         |                             ^~~~~~~~
2025-09-08T00:31:44,817   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:56,
2025-09-08T00:31:44,817                    from ./base/sbml/packages/layout/sbml/Layout.cpp:37:
2025-09-08T00:31:44,817   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:31:44,818     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:31:44,818         |                            ^~~~~~~~
2025-09-08T00:31:44,823   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:31:44,823     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:31:44,823         |                             ^~~~~~~~
2025-09-08T00:31:44,824   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:31:44,824     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:31:44,824         |                          ^~~~~~~~
2025-09-08T00:31:44,868   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2025-09-08T00:31:44,868   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:31:44,868     453 |   if (&(name) == NULL)
2025-09-08T00:31:44,868         |               ^
2025-09-08T00:31:44,868   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2025-09-08T00:31:44,869     448 | int Layout::setName (const std::string& name)
2025-09-08T00:31:44,869         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:31:45,573   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:31:45,573     453 |   if (&(name) == NULL)
2025-09-08T00:31:45,573         |   ^~
2025-09-08T00:31:57,057   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:31:57,058                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:31:57,058                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:31:57,058                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:31:57,058                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:31:57,058                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:31:57,058                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:31:57,058                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2025-09-08T00:31:57,058                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2025-09-08T00:31:57,058   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:31:57,058      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:31:57,059         |                           ^~~~~~~~~~~~~~
2025-09-08T00:31:57,059   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:31:57,060                    from ./base//sbml/packages/layout/sbml/LineSegment.h:51:
2025-09-08T00:31:57,060   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:31:57,060     117 |     struct unary_function
2025-09-08T00:31:57,060         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:02,874   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:32:02,874                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:32:02,874                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:32:02,874                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:32:02,874                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:32:02,874                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:32:02,874                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:32:02,874                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2025-09-08T00:32:02,875   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:02,875      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:02,875         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:02,875   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:02,876                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T00:32:02,876                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T00:32:02,876                    from /usr/include/c++/14/ios:44,
2025-09-08T00:32:02,876                    from /usr/include/c++/14/istream:40,
2025-09-08T00:32:02,876                    from /usr/include/c++/14/sstream:40,
2025-09-08T00:32:02,876                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2025-09-08T00:32:02,876   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:02,876     117 |     struct unary_function
2025-09-08T00:32:02,876         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:08,453   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:60,
2025-09-08T00:32:08,453                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2025-09-08T00:32:08,453   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:08,453      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:08,454         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:08,454   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:08,454                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:58:
2025-09-08T00:32:08,455   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:08,455     117 |     struct unary_function
2025-09-08T00:32:08,455         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:09,070   In file included from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:54,
2025-09-08T00:32:09,070                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T00:32:09,070   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:09,070     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:09,071         |                             ^~~~~~~~
2025-09-08T00:32:09,071   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:32:09,071     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:32:09,071         |                                   ^~~~~~~~
2025-09-08T00:32:09,076   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:09,076     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:09,076         |                             ^~~~~~~~
2025-09-08T00:32:09,077   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:32:09,077     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:32:09,077         |                           ^~~~~~~~
2025-09-08T00:32:09,080   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:09,080     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:09,080         |                             ^~~~~~~~
2025-09-08T00:32:09,081   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:32:09,081                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:36:
2025-09-08T00:32:09,081   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:32:09,081     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:32:09,081         |                              ^~~~~~~~
2025-09-08T00:32:09,084   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:09,084     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:09,084         |                             ^~~~~~~~
2025-09-08T00:32:09,084   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:32:09,084   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:32:09,085     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:32:09,085         |                          ^~~~~~~~
2025-09-08T00:32:09,087   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:09,088     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:09,088         |                             ^~~~~~~~
2025-09-08T00:32:09,088   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:32:09,088   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:32:09,088     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:32:09,088         |                      ^~~~~~~~
2025-09-08T00:32:15,880   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:32:15,880                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:32:15,881                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:32:15,881                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:32:15,881                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:32:15,881                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:32:15,881                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:32:15,881                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:32:15,881                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T00:32:15,881                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:54,
2025-09-08T00:32:15,881                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2025-09-08T00:32:15,881   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:15,881      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:15,881         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:15,882   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:15,883                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:52:
2025-09-08T00:32:15,883   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:15,883     117 |     struct unary_function
2025-09-08T00:32:15,883         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:16,193   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:16,193     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:16,193         |                             ^~~~~~~~
2025-09-08T00:32:16,194   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:32:16,194     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:32:16,194         |                            ^~~~~~~~
2025-09-08T00:32:16,199   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:16,199     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:16,199         |                             ^~~~~~~~
2025-09-08T00:32:16,200   In file included from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:31:
2025-09-08T00:32:16,200   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:32:16,200     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:32:16,200         |                          ^~~~~~~~
2025-09-08T00:32:22,397   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:32:22,397                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:32:22,397                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:32:22,397                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:32:22,397                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:32:22,397                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:32:22,397                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:32:22,397                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:32:22,398                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T00:32:22,398                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49,
2025-09-08T00:32:22,398                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2025-09-08T00:32:22,398   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:22,398      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:22,398         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:22,399   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:22,399                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:48:
2025-09-08T00:32:22,399   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:22,399     117 |     struct unary_function
2025-09-08T00:32:22,399         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:22,712   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:22,713     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:22,713         |                             ^~~~~~~~
2025-09-08T00:32:22,713   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:32:22,713     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:32:22,713         |                          ^~~~~~~~
2025-09-08T00:32:22,716   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:22,716     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:22,716         |                             ^~~~~~~~
2025-09-08T00:32:22,716   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:32:22,717                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:31:
2025-09-08T00:32:22,717   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:32:22,717     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:32:22,717         |                              ^~~~~~~~
2025-09-08T00:32:22,726   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:22,726     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:22,726         |                             ^~~~~~~~
2025-09-08T00:32:22,727   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:32:22,727                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:32:22,727   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:32:22,727     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:32:22,727         |                                   ^~~~~~~~
2025-09-08T00:32:22,732   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:22,732     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:22,732         |                             ^~~~~~~~
2025-09-08T00:32:22,733   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:32:22,733     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:32:22,733         |                           ^~~~~~~~
2025-09-08T00:32:22,736   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:22,736     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:22,737         |                             ^~~~~~~~
2025-09-08T00:32:22,737   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:32:22,737   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:32:22,737     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:32:22,737         |                      ^~~~~~~~
2025-09-08T00:32:27,821   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:32:27,821                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:32:27,821                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:32:27,821                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:32:27,821                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:32:27,821                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:32:27,822                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:32:27,822                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:32:27,822                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T00:32:27,822                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:54,
2025-09-08T00:32:27,822                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2025-09-08T00:32:27,822   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:27,822      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:27,822         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:27,822   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:27,823                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:52:
2025-09-08T00:32:27,823   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:27,823     117 |     struct unary_function
2025-09-08T00:32:27,823         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:28,149   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:28,149     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:28,149         |                             ^~~~~~~~
2025-09-08T00:32:28,150   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:32:28,150     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:32:28,150         |                                   ^~~~~~~~
2025-09-08T00:32:28,153   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:28,153     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:28,153         |                             ^~~~~~~~
2025-09-08T00:32:28,153   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:32:28,154                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:31:
2025-09-08T00:32:28,154   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:32:28,154     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:32:28,154         |                              ^~~~~~~~
2025-09-08T00:32:28,156   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:28,157     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:28,157         |                             ^~~~~~~~
2025-09-08T00:32:28,157   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:32:28,157   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:32:28,157     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:32:28,157         |                          ^~~~~~~~
2025-09-08T00:32:28,162   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:28,162     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:28,162         |                             ^~~~~~~~
2025-09-08T00:32:28,163   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:32:28,163   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:32:28,163     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:32:28,163         |                           ^~~~~~~~
2025-09-08T00:32:28,166   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:28,166     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:28,166         |                             ^~~~~~~~
2025-09-08T00:32:28,167   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:32:28,167   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:32:28,167     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:32:28,167         |                      ^~~~~~~~
2025-09-08T00:32:34,516   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:32:34,516                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:32:34,517                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:32:34,517                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:32:34,517                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:32:34,517                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:32:34,517                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:32:34,517                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:32:34,517                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T00:32:34,517                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2025-09-08T00:32:34,517                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2025-09-08T00:32:34,517   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:34,517      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:34,518         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:34,518   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:34,519                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2025-09-08T00:32:34,519   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:34,519     117 |     struct unary_function
2025-09-08T00:32:34,519         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:34,833   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:34,834     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:34,834         |                             ^~~~~~~~
2025-09-08T00:32:34,834   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:32:34,834     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:32:34,834         |                      ^~~~~~~~
2025-09-08T00:32:34,837   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:34,837     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:34,837         |                             ^~~~~~~~
2025-09-08T00:32:34,838   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:32:34,838                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:33:
2025-09-08T00:32:34,838   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:32:34,838     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:32:34,838         |                              ^~~~~~~~
2025-09-08T00:32:34,841   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:34,841     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:34,841         |                             ^~~~~~~~
2025-09-08T00:32:34,841   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:32:34,841   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:32:34,841     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:32:34,841         |                          ^~~~~~~~
2025-09-08T00:32:34,851   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:34,851     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:34,851         |                             ^~~~~~~~
2025-09-08T00:32:34,851   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:32:34,851                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:32:34,852   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:32:34,852     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:32:34,852         |                                   ^~~~~~~~
2025-09-08T00:32:34,857   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:34,857     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:34,857         |                             ^~~~~~~~
2025-09-08T00:32:34,857   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:32:34,857     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:32:34,858         |                           ^~~~~~~~
2025-09-08T00:32:40,496   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:32:40,496                    from ./base//sbml/Model.h:446,
2025-09-08T00:32:40,497                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2025-09-08T00:32:40,497   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:40,497      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:40,497         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:40,498   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:40,498                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:32:40,498                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T00:32:40,498                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2025-09-08T00:32:40,498   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:40,498     117 |     struct unary_function
2025-09-08T00:32:40,498         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:40,899   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:32:40,899                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:32:40,899                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:45:
2025-09-08T00:32:40,899   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:40,900     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:40,900         |                             ^~~~~~~~
2025-09-08T00:32:40,900   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:32:40,900     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:32:40,900         |                              ^~~~~~~~
2025-09-08T00:32:40,903   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:40,903     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:40,903         |                             ^~~~~~~~
2025-09-08T00:32:40,903   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:32:40,903   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:32:40,904     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:32:40,904         |                          ^~~~~~~~
2025-09-08T00:32:40,913   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:40,913     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:40,913         |                             ^~~~~~~~
2025-09-08T00:32:40,913   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:32:40,914                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:32:40,914   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:32:40,914     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:32:40,914         |                                   ^~~~~~~~
2025-09-08T00:32:40,919   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:40,919     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:40,919         |                             ^~~~~~~~
2025-09-08T00:32:40,920   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:32:40,920     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:32:40,920         |                           ^~~~~~~~
2025-09-08T00:32:40,923   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:40,923     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:40,923         |                             ^~~~~~~~
2025-09-08T00:32:40,924   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:32:40,924   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:32:40,924     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:32:40,924         |                      ^~~~~~~~
2025-09-08T00:32:45,139   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:32:45,139                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:32:45,140                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:32:45,140                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:32:45,140                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:32:45,140                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T00:32:45,140                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T00:32:45,140                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T00:32:45,140                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T00:32:45,140                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T00:32:45,140                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2025-09-08T00:32:45,140   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:45,140      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:45,141         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:45,141   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:45,142                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:32:45,142                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:32:45,142                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:32:45,142                    from ./base//sbml/SBase.h:145,
2025-09-08T00:32:45,142                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T00:32:45,142   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:45,142     117 |     struct unary_function
2025-09-08T00:32:45,142         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:48,876   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:32:48,876                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:32:48,876                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:32:48,876                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2025-09-08T00:32:48,876                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2025-09-08T00:32:48,877   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:48,877      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:48,877         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:48,877   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:48,877                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2025-09-08T00:32:48,877                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2025-09-08T00:32:48,877                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2025-09-08T00:32:48,877   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:48,877     117 |     struct unary_function
2025-09-08T00:32:48,878         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:49,441   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:32:49,441                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:32:49,441                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T00:32:49,442                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T00:32:49,442                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T00:32:49,442   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:49,442     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:49,442         |                             ^~~~~~~~
2025-09-08T00:32:49,442   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:32:49,442     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:32:49,442         |                              ^~~~~~~~
2025-09-08T00:32:49,444   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:49,444     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:49,444         |                             ^~~~~~~~
2025-09-08T00:32:49,444   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:32:49,444   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:32:49,444     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:32:49,444         |                          ^~~~~~~~
2025-09-08T00:32:49,453   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:49,453     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:49,453         |                             ^~~~~~~~
2025-09-08T00:32:49,453   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:32:49,453                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:32:49,453   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:32:49,453     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:32:49,454         |                                   ^~~~~~~~
2025-09-08T00:32:49,458   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:49,458     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:49,458         |                             ^~~~~~~~
2025-09-08T00:32:49,458   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:32:49,458     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:32:49,458         |                           ^~~~~~~~
2025-09-08T00:32:49,461   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:49,461     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:49,461         |                             ^~~~~~~~
2025-09-08T00:32:49,461   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:32:49,461   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:32:49,461     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:32:49,462         |                      ^~~~~~~~
2025-09-08T00:32:49,481   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T00:32:49,482                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T00:32:49,482   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:49,482     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:32:49,482         |                        ^~~~~~~~
2025-09-08T00:32:49,482   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T00:32:49,482   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:32:49,482     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:32:49,482         |                        ^~~~~~~~
2025-09-08T00:32:49,485   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:49,485     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:49,485         |                             ^~~~~~~~
2025-09-08T00:32:49,485   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T00:32:49,485   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:32:49,485     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:32:49,485         |                            ^~~~~~~~
2025-09-08T00:32:49,490   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:32:49,490     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:32:49,490         |                             ^~~~~~~~
2025-09-08T00:32:49,491   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T00:32:49,491   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:32:49,491     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:32:49,491         |                          ^~~~~~~~
2025-09-08T00:32:56,174   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:32:56,175                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:32:56,175                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:32:56,175                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2025-09-08T00:32:56,175                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2025-09-08T00:32:56,175   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:56,175      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:56,175         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:56,176   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:56,176                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2025-09-08T00:32:56,176                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2025-09-08T00:32:56,176                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2025-09-08T00:32:56,177   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:56,177     117 |     struct unary_function
2025-09-08T00:32:56,177         |            ^~~~~~~~~~~~~~
2025-09-08T00:32:59,688   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:32:59,688                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:32:59,688                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:32:59,688                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2025-09-08T00:32:59,689   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:32:59,689      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:32:59,689         |                           ^~~~~~~~~~~~~~
2025-09-08T00:32:59,689   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:32:59,689                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:32:59,689   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:32:59,689     117 |     struct unary_function
2025-09-08T00:32:59,689         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:00,252   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:33:00,253                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:33:00,253                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T00:33:00,253                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T00:33:00,253                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:35:
2025-09-08T00:33:00,253   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:00,253     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:00,253         |                             ^~~~~~~~
2025-09-08T00:33:00,253   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:33:00,254     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:33:00,254         |                              ^~~~~~~~
2025-09-08T00:33:00,255   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:00,255     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:00,255         |                             ^~~~~~~~
2025-09-08T00:33:00,255   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:33:00,256   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:33:00,256     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:33:00,256         |                          ^~~~~~~~
2025-09-08T00:33:00,264   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:00,264     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:00,264         |                             ^~~~~~~~
2025-09-08T00:33:00,265   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:33:00,265                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:33:00,265   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:33:00,265     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:33:00,265         |                                   ^~~~~~~~
2025-09-08T00:33:00,269   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:00,269     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:00,269         |                             ^~~~~~~~
2025-09-08T00:33:00,270   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:33:00,270     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:33:00,270         |                           ^~~~~~~~
2025-09-08T00:33:00,272   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:00,273     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:00,273         |                             ^~~~~~~~
2025-09-08T00:33:00,273   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:33:00,273   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:33:00,273     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:33:00,273         |                      ^~~~~~~~
2025-09-08T00:33:00,293   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T00:33:00,293                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T00:33:00,293   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:00,293     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:33:00,293         |                        ^~~~~~~~
2025-09-08T00:33:00,294   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T00:33:00,294   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:33:00,294     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:33:00,294         |                        ^~~~~~~~
2025-09-08T00:33:00,296   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:00,296     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:00,297         |                             ^~~~~~~~
2025-09-08T00:33:00,297   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T00:33:00,297   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:33:00,297     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:33:00,297         |                            ^~~~~~~~
2025-09-08T00:33:00,302   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:00,302     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:00,302         |                             ^~~~~~~~
2025-09-08T00:33:00,302   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T00:33:00,302   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:33:00,302     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:33:00,302         |                          ^~~~~~~~
2025-09-08T00:33:00,304   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:00,304      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:33:00,304         |                       ^~~~~~~~~~~~~~
2025-09-08T00:33:00,304   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:00,304     117 |     struct unary_function
2025-09-08T00:33:00,304         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:00,543   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:33:00,543   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:24: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T00:33:00,543     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T00:33:00,543         |                        ^
2025-09-08T00:33:00,544   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:41: note: ‘x’ declared here
2025-09-08T00:33:00,544     417 |         virtual bool visit(const SBase &x)
2025-09-08T00:33:00,544         |                            ~~~~~~~~~~~~~^
2025-09-08T00:33:00,565   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T00:33:00,565   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:33:00,566     550 |   if (&d == NULL) return 0;
2025-09-08T00:33:00,566         |          ^
2025-09-08T00:33:00,566   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2025-09-08T00:33:00,566     548 | LayoutValidator::validate (const SBMLDocument& d)
2025-09-08T00:33:00,566         |                            ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:33:00,568   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T00:33:00,568   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:33:00,568     592 |   if (&filename == NULL) return 0;
2025-09-08T00:33:00,568         |                 ^
2025-09-08T00:33:00,568   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2025-09-08T00:33:00,568     590 | LayoutValidator::validate (const std::string& filename)
2025-09-08T00:33:00,568         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:33:01,517   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T00:33:01,517   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:01,517     550 |   if (&d == NULL) return 0;
2025-09-08T00:33:01,517         |   ^~
2025-09-08T00:33:01,540   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:33:01,541   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:32: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:01,541     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T00:33:01,541         |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:33:01,559   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T00:33:01,559   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:01,559     592 |   if (&filename == NULL) return 0;
2025-09-08T00:33:01,559         |   ^~
2025-09-08T00:33:06,421   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:33:06,421                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:33:06,422                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:33:06,422                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2025-09-08T00:33:06,422   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:06,422      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:06,422         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:06,422   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:06,422                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:33:06,422   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:06,423     117 |     struct unary_function
2025-09-08T00:33:06,423         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:06,991   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:33:06,991                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:33:06,991                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T00:33:06,991                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T00:33:06,991                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T00:33:06,991   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:06,992     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:06,992         |                             ^~~~~~~~
2025-09-08T00:33:06,992   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:33:06,992     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:33:06,992         |                              ^~~~~~~~
2025-09-08T00:33:06,993   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:06,994     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:06,994         |                             ^~~~~~~~
2025-09-08T00:33:06,994   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:33:06,994   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:33:06,994     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:33:06,994         |                          ^~~~~~~~
2025-09-08T00:33:07,002   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:07,003     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:07,003         |                             ^~~~~~~~
2025-09-08T00:33:07,003   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:33:07,003                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:33:07,003   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:33:07,003     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:33:07,003         |                                   ^~~~~~~~
2025-09-08T00:33:07,007   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:07,008     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:07,008         |                             ^~~~~~~~
2025-09-08T00:33:07,008   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:33:07,008     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:33:07,008         |                           ^~~~~~~~
2025-09-08T00:33:07,011   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:07,011     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:07,011         |                             ^~~~~~~~
2025-09-08T00:33:07,011   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:33:07,011   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:33:07,011     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:33:07,011         |                      ^~~~~~~~
2025-09-08T00:33:07,031   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T00:33:07,031                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T00:33:07,031   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:07,032     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T00:33:07,032         |                        ^~~~~~~~
2025-09-08T00:33:07,032   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T00:33:07,032   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T00:33:07,032     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T00:33:07,032         |                        ^~~~~~~~
2025-09-08T00:33:07,035   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:07,035     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:07,035         |                             ^~~~~~~~
2025-09-08T00:33:07,035   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T00:33:07,035   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:33:07,035     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:33:07,035         |                            ^~~~~~~~
2025-09-08T00:33:07,040   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:07,040     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:07,040         |                             ^~~~~~~~
2025-09-08T00:33:07,040   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T00:33:07,040   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:33:07,041     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:33:07,041         |                          ^~~~~~~~
2025-09-08T00:33:10,167   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:33:10,168                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:33:10,168                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:33:10,168                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2025-09-08T00:33:10,168   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:10,168      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:10,168         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:10,168   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:10,168                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:33:10,169   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:10,169     117 |     struct unary_function
2025-09-08T00:33:10,169         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:13,720   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:33:13,720                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:33:13,720                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:33:13,721                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2025-09-08T00:33:13,721                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2025-09-08T00:33:13,721   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:13,721      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:13,721         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:13,721   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:13,721                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2025-09-08T00:33:13,721   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:13,721     117 |     struct unary_function
2025-09-08T00:33:13,721         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:14,213   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T00:33:14,213                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T00:33:14,213                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T00:33:14,213                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:36:
2025-09-08T00:33:14,214   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:14,214     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:14,214         |                             ^~~~~~~~
2025-09-08T00:33:14,214   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T00:33:14,214     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T00:33:14,214         |                              ^~~~~~~~
2025-09-08T00:33:14,217   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:14,217     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:14,217         |                             ^~~~~~~~
2025-09-08T00:33:14,217   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T00:33:14,218   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T00:33:14,218     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T00:33:14,218         |                          ^~~~~~~~
2025-09-08T00:33:14,227   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:14,227     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:14,227         |                             ^~~~~~~~
2025-09-08T00:33:14,228   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T00:33:14,228                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T00:33:14,228   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T00:33:14,228     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T00:33:14,228         |                                   ^~~~~~~~
2025-09-08T00:33:14,233   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:14,233     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:14,233         |                             ^~~~~~~~
2025-09-08T00:33:14,234   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T00:33:14,234     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T00:33:14,234         |                           ^~~~~~~~
2025-09-08T00:33:14,237   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:14,237     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:14,237         |                             ^~~~~~~~
2025-09-08T00:33:14,238   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T00:33:14,238   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T00:33:14,238     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T00:33:14,238         |                      ^~~~~~~~
2025-09-08T00:33:14,256   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:14,256     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:14,256         |                             ^~~~~~~~
2025-09-08T00:33:14,256   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:56,
2025-09-08T00:33:14,256                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:38:
2025-09-08T00:33:14,256   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T00:33:14,256     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T00:33:14,257         |                            ^~~~~~~~
2025-09-08T00:33:14,262   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T00:33:14,262     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T00:33:14,262         |                             ^~~~~~~~
2025-09-08T00:33:14,263   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T00:33:14,263     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T00:33:14,263         |                          ^~~~~~~~
2025-09-08T00:33:18,962   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:33:18,963                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:33:18,963                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:33:18,963                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T00:33:18,963                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T00:33:18,963                    from ./base//sbml/extension/SBMLExtensionRegister.h:42,
2025-09-08T00:33:18,963                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2025-09-08T00:33:18,963   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:18,963      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:18,963         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:18,964   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:18,964                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:33:18,964                    from ./base//sbml/SBMLError.h:457,
2025-09-08T00:33:18,964                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T00:33:18,964   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:18,965     117 |     struct unary_function
2025-09-08T00:33:18,965         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:23,791   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:33:23,791                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:33:23,791                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:33:23,791                    from ./base//sbml/extension/SBasePlugin.h:253,
2025-09-08T00:33:23,792                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:54,
2025-09-08T00:33:23,792                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2025-09-08T00:33:23,792   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:23,792      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:23,792         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:23,792   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:23,792                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:33:23,793                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:33:23,793                    from ./base//sbml/extension/SBasePlugin.h:251:
2025-09-08T00:33:23,793   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:23,793     117 |     struct unary_function
2025-09-08T00:33:23,793         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:28,513   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:33:28,513                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:33:28,513                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:33:28,513                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2025-09-08T00:33:28,514                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:58,
2025-09-08T00:33:28,514                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2025-09-08T00:33:28,514   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:28,514      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:28,514         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:28,514   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:28,514                    from ./base//sbml/xml/XMLError.h:559,
2025-09-08T00:33:28,514                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T00:33:28,514                    from ./base//sbml/extension/SBMLDocumentPlugin.h:51:
2025-09-08T00:33:28,515   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:28,515     117 |     struct unary_function
2025-09-08T00:33:28,515         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:32,198   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2025-09-08T00:33:32,198                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2025-09-08T00:33:32,199   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:32,199      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:32,199         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:32,199   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:32,199                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2025-09-08T00:33:32,199   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:32,199     117 |     struct unary_function
2025-09-08T00:33:32,199         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:32,783   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T00:33:32,783   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:33:32,783      81 |   if (&orig == NULL)
2025-09-08T00:33:32,783         |             ^
2025-09-08T00:33:32,783   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2025-09-08T00:33:32,783      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2025-09-08T00:33:32,784         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:33:32,784   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T00:33:32,784   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:33:32,784      99 |   if (&rhs == NULL)
2025-09-08T00:33:32,785         |            ^
2025-09-08T00:33:32,785   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2025-09-08T00:33:32,785      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2025-09-08T00:33:32,785         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:33:33,231   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T00:33:33,231   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:33,231      81 |   if (&orig == NULL)
2025-09-08T00:33:33,231         |   ^~
2025-09-08T00:33:33,231   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T00:33:33,232   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:33,232      99 |   if (&rhs == NULL)
2025-09-08T00:33:33,232         |   ^~
2025-09-08T00:33:36,935   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:58,
2025-09-08T00:33:36,935                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2025-09-08T00:33:36,935   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:36,935      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:36,935         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:36,935   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:36,935                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:54:
2025-09-08T00:33:36,936   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:36,936     117 |     struct unary_function
2025-09-08T00:33:36,936         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:37,526   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T00:33:37,526   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:33:37,526      88 |   if (&orig == NULL)
2025-09-08T00:33:37,526         |             ^
2025-09-08T00:33:37,526   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2025-09-08T00:33:37,526      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2025-09-08T00:33:37,526         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:33:37,527   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T00:33:37,527   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:33:37,528     114 |   if (&rhs == NULL)
2025-09-08T00:33:37,528         |            ^
2025-09-08T00:33:37,528   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2025-09-08T00:33:37,528     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2025-09-08T00:33:37,528         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:33:37,549   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T00:33:37,550   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:33:37,550     651 |   if (&orig == NULL)
2025-09-08T00:33:37,550         |             ^
2025-09-08T00:33:37,550   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:648:70: note: ‘orig’ declared here
2025-09-08T00:33:37,550     648 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2025-09-08T00:33:37,550         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:33:37,551   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T00:33:37,551   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:33:37,551     673 |   if (&rhs == NULL)
2025-09-08T00:33:37,551         |            ^
2025-09-08T00:33:37,551   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:671:59: note: ‘rhs’ declared here
2025-09-08T00:33:37,552     671 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2025-09-08T00:33:37,552         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:33:38,064   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T00:33:38,064   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:38,064      88 |   if (&orig == NULL)
2025-09-08T00:33:38,064         |   ^~
2025-09-08T00:33:38,064   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T00:33:38,064   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:38,064     114 |   if (&rhs == NULL)
2025-09-08T00:33:38,065         |   ^~
2025-09-08T00:33:38,065   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T00:33:38,065   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:38,065     673 |   if (&rhs == NULL)
2025-09-08T00:33:38,065         |   ^~
2025-09-08T00:33:38,075   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T00:33:38,075   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:38,075     651 |   if (&orig == NULL)
2025-09-08T00:33:38,076         |   ^~
2025-09-08T00:33:43,134   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2025-09-08T00:33:43,135                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2025-09-08T00:33:43,135   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:43,135      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:43,135         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:43,136   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:43,136                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2025-09-08T00:33:43,136   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:43,136     117 |     struct unary_function
2025-09-08T00:33:43,136         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:43,739   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T00:33:43,739   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:33:43,739      91 |   if (&orig == NULL)
2025-09-08T00:33:43,739         |             ^
2025-09-08T00:33:43,739   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2025-09-08T00:33:43,740      88 | Input::Input (const Input& orig)
2025-09-08T00:33:43,740         |               ~~~~~~~~~~~~~^~~~
2025-09-08T00:33:43,742   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T00:33:43,742   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:33:43,742     114 |   if (&rhs == NULL)
2025-09-08T00:33:43,742         |            ^
2025-09-08T00:33:43,742   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2025-09-08T00:33:43,743     112 | Input::operator=(const Input& rhs)
2025-09-08T00:33:43,743         |                  ~~~~~~~~~~~~~^~~
2025-09-08T00:33:43,746   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T00:33:43,747   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T00:33:43,747     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T00:33:43,747         |                             ^
2025-09-08T00:33:43,747   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2025-09-08T00:33:43,747     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T00:33:43,747         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:33:43,748   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T00:33:43,748   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:33:43,748     328 |   if (&(name) == NULL)
2025-09-08T00:33:43,748         |               ^
2025-09-08T00:33:43,748   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2025-09-08T00:33:43,748     326 | Input::setName(const std::string& name)
2025-09-08T00:33:43,748         |                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:33:43,781   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2025-09-08T00:33:43,782   ./base/sbml/packages/qual/sbml/Input.cpp:956:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:43,782     956 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T00:33:43,782         |                             ^~~~~~~~~~~~~~
2025-09-08T00:33:43,782   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:43,782     117 |     struct unary_function
2025-09-08T00:33:43,782         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:44,321   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T00:33:44,321   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:44,321     328 |   if (&(name) == NULL)
2025-09-08T00:33:44,321         |   ^~
2025-09-08T00:33:44,337   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T00:33:44,337   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:44,337      91 |   if (&orig == NULL)
2025-09-08T00:33:44,337         |   ^~
2025-09-08T00:33:44,337   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T00:33:44,337   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:44,337     114 |   if (&rhs == NULL)
2025-09-08T00:33:44,337         |   ^~
2025-09-08T00:33:44,338   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T00:33:44,338   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:44,338     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T00:33:44,338         |   ^~
2025-09-08T00:33:51,124   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2025-09-08T00:33:51,124                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2025-09-08T00:33:51,124   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:51,124      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:51,125         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:51,125   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:51,125                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2025-09-08T00:33:51,125   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:51,125     117 |     struct unary_function
2025-09-08T00:33:51,125         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:51,715   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T00:33:51,716   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:33:51,716      89 |   if (&orig == NULL)
2025-09-08T00:33:51,716         |             ^
2025-09-08T00:33:51,716   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2025-09-08T00:33:51,716      86 | Output::Output (const Output& orig)
2025-09-08T00:33:51,716         |                 ~~~~~~~~~~~~~~^~~~
2025-09-08T00:33:51,717   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T00:33:51,717   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:33:51,718     111 |   if (&rhs == NULL)
2025-09-08T00:33:51,718         |            ^
2025-09-08T00:33:51,718   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2025-09-08T00:33:51,718     109 | Output::operator=(const Output& rhs)
2025-09-08T00:33:51,718         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T00:33:51,721   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T00:33:51,721   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T00:33:51,722     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T00:33:51,722         |                             ^
2025-09-08T00:33:51,722   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2025-09-08T00:33:51,722     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T00:33:51,722         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T00:33:51,723   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T00:33:51,723   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:33:51,723     304 |   if (&(name) == NULL)
2025-09-08T00:33:51,723         |               ^
2025-09-08T00:33:51,723   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2025-09-08T00:33:51,723     302 | Output::setName(const std::string& name)
2025-09-08T00:33:51,723         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:33:51,754   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2025-09-08T00:33:51,754   ./base/sbml/packages/qual/sbml/Output.cpp:873:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:51,754     873 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T00:33:51,754         |                             ^~~~~~~~~~~~~~
2025-09-08T00:33:51,754   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:51,754     117 |     struct unary_function
2025-09-08T00:33:51,754         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:52,279   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T00:33:52,279   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:52,279     304 |   if (&(name) == NULL)
2025-09-08T00:33:52,279         |   ^~
2025-09-08T00:33:52,294   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T00:33:52,294   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:52,294      89 |   if (&orig == NULL)
2025-09-08T00:33:52,295         |   ^~
2025-09-08T00:33:52,295   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T00:33:52,295   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:52,295     111 |   if (&rhs == NULL)
2025-09-08T00:33:52,295         |   ^~
2025-09-08T00:33:52,295   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T00:33:52,295   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:52,295     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T00:33:52,295         |   ^~
2025-09-08T00:33:58,683   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:69,
2025-09-08T00:33:58,683                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2025-09-08T00:33:58,683   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:33:58,683      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:33:58,683         |                           ^~~~~~~~~~~~~~
2025-09-08T00:33:58,684   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:33:58,684                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:65:
2025-09-08T00:33:58,685   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:33:58,685     117 |     struct unary_function
2025-09-08T00:33:58,685         |            ^~~~~~~~~~~~~~
2025-09-08T00:33:59,275   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T00:33:59,275   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:33:59,275      95 |   if (&orig == NULL)
2025-09-08T00:33:59,275         |             ^
2025-09-08T00:33:59,276   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2025-09-08T00:33:59,276      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2025-09-08T00:33:59,276         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:33:59,278   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T00:33:59,278   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:33:59,278     120 |   if (&rhs == NULL)
2025-09-08T00:33:59,278         |            ^
2025-09-08T00:33:59,279   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2025-09-08T00:33:59,279     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2025-09-08T00:33:59,279         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:33:59,283   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T00:33:59,283   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2025-09-08T00:33:59,283     295 |   if (&(compartment) == NULL)
2025-09-08T00:33:59,283         |                      ^
2025-09-08T00:33:59,283   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2025-09-08T00:33:59,283     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2025-09-08T00:33:59,283         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T00:33:59,285   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2025-09-08T00:33:59,285   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:33:59,285     329 |   if (&(name) == NULL)
2025-09-08T00:33:59,285         |               ^
2025-09-08T00:33:59,285   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2025-09-08T00:33:59,285     327 | QualitativeSpecies::setName(const std::string& name)
2025-09-08T00:33:59,285         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:33:59,838   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:59,838     329 |   if (&(name) == NULL)
2025-09-08T00:33:59,838         |   ^~
2025-09-08T00:33:59,852   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T00:33:59,853   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:59,853      95 |   if (&orig == NULL)
2025-09-08T00:33:59,853         |   ^~
2025-09-08T00:33:59,854   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T00:33:59,854   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:59,854     120 |   if (&rhs == NULL)
2025-09-08T00:33:59,854         |   ^~
2025-09-08T00:33:59,855   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T00:33:59,855   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:33:59,855     295 |   if (&(compartment) == NULL)
2025-09-08T00:33:59,855         |   ^~
2025-09-08T00:34:06,378   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2025-09-08T00:34:06,378                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2025-09-08T00:34:06,378   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:06,379      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:06,379         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:06,380   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:06,380                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2025-09-08T00:34:06,380   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:06,380     117 |     struct unary_function
2025-09-08T00:34:06,380         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:06,988   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T00:34:06,988   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:34:06,988      94 |   if (&orig == NULL)
2025-09-08T00:34:06,988         |             ^
2025-09-08T00:34:06,989   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2025-09-08T00:34:06,989      91 | Transition::Transition (const Transition& orig)
2025-09-08T00:34:06,989         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:34:06,991   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T00:34:06,992   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:34:06,992     118 |   if (&rhs == NULL)
2025-09-08T00:34:06,992         |            ^
2025-09-08T00:34:06,992   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2025-09-08T00:34:06,992     116 | Transition::operator=(const Transition& rhs)
2025-09-08T00:34:06,992         |                       ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:34:06,999   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2025-09-08T00:34:06,999   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:34:07,000     257 |   if (&(name) == NULL)
2025-09-08T00:34:07,000         |               ^
2025-09-08T00:34:07,000   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2025-09-08T00:34:07,000     255 | Transition::setName(const std::string& name)
2025-09-08T00:34:07,000         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:34:07,576   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:34:07,576     257 |   if (&(name) == NULL)
2025-09-08T00:34:07,576         |   ^~
2025-09-08T00:34:07,592   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T00:34:07,592   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:34:07,592     118 |   if (&rhs == NULL)
2025-09-08T00:34:07,592         |   ^~
2025-09-08T00:34:07,608   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T00:34:07,608   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:34:07,608      94 |   if (&orig == NULL)
2025-09-08T00:34:07,608         |   ^~
2025-09-08T00:34:14,283   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:34:14,283                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:34:14,284                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:34:14,284                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2025-09-08T00:34:14,284                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2025-09-08T00:34:14,284   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:14,284      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:14,284         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:14,284   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:14,284                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2025-09-08T00:34:14,284                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2025-09-08T00:34:14,285                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2025-09-08T00:34:14,285   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:14,285     117 |     struct unary_function
2025-09-08T00:34:14,285         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:19,218   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:34:19,218                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:34:19,218                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:34:19,218                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2025-09-08T00:34:19,218                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2025-09-08T00:34:19,218   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:19,218      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:19,219         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:19,219   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:19,219                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2025-09-08T00:34:19,219                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2025-09-08T00:34:19,219                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2025-09-08T00:34:19,219   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:19,219     117 |     struct unary_function
2025-09-08T00:34:19,219         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:22,744   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:34:22,744                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:34:22,744                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:34:22,745                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2025-09-08T00:34:22,745                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2025-09-08T00:34:22,745   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:22,745      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:22,745         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:22,745   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:22,745                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2025-09-08T00:34:22,745                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2025-09-08T00:34:22,745                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2025-09-08T00:34:22,746   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:22,746     117 |     struct unary_function
2025-09-08T00:34:22,746         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:26,441   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:34:26,441                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:34:26,441                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:34:26,441                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2025-09-08T00:34:26,441   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:26,441      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:26,441         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:26,442   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:26,442                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:34:26,442   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:26,442     117 |     struct unary_function
2025-09-08T00:34:26,442         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:27,020   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:27,021      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:34:27,021         |                       ^~~~~~~~~~~~~~
2025-09-08T00:34:27,021   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:27,021     117 |     struct unary_function
2025-09-08T00:34:27,021         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:27,170   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:34:27,170   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T00:34:27,170     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T00:34:27,170         |           ^
2025-09-08T00:34:27,170   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2025-09-08T00:34:27,170     313 |   virtual bool visit (const SBase &x)
2025-09-08T00:34:27,171         |                       ~~~~~~~~~~~~~^
2025-09-08T00:34:27,184   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T00:34:27,185   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:34:27,185     419 |   if (&d == NULL) return 0;
2025-09-08T00:34:27,185         |          ^
2025-09-08T00:34:27,185   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2025-09-08T00:34:27,185     417 | QualValidator::validate (const SBMLDocument& d)
2025-09-08T00:34:27,185         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:34:27,187   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T00:34:27,187   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:34:27,188     449 |   if (&filename == NULL) return 0;
2025-09-08T00:34:27,188         |                 ^
2025-09-08T00:34:27,188   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2025-09-08T00:34:27,188     447 | QualValidator::validate (const std::string& filename)
2025-09-08T00:34:27,188         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:34:27,928   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T00:34:27,929   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:34:27,929     419 |   if (&d == NULL) return 0;
2025-09-08T00:34:27,929         |   ^~
2025-09-08T00:34:27,942   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T00:34:27,942   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:34:27,942     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T00:34:27,943         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:34:27,956   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T00:34:27,956   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:34:27,956     449 |   if (&filename == NULL) return 0;
2025-09-08T00:34:27,956         |   ^~
2025-09-08T00:34:32,153   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:34:32,153                    from ./base//sbml/Model.h:446,
2025-09-08T00:34:32,153                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2025-09-08T00:34:32,153   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:32,153      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:32,154         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:32,154   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:32,154                    from ./base//sbml/Model.h:444:
2025-09-08T00:34:32,154   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:32,154     117 |     struct unary_function
2025-09-08T00:34:32,154         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:36,259   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:34:36,259                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:34:36,260                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:34:36,260                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2025-09-08T00:34:36,260                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2025-09-08T00:34:36,260   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:36,260      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:36,260         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:36,260   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:36,260                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2025-09-08T00:34:36,260   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:36,260     117 |     struct unary_function
2025-09-08T00:34:36,261         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:36,842   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:34:36,842   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:34:36,843      97 |   if (&(node) == NULL)
2025-09-08T00:34:36,843         |               ^
2025-09-08T00:34:36,843   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2025-09-08T00:34:36,843      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:34:36,843         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:34:37,271   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:34:37,271      97 |   if (&(node) == NULL)
2025-09-08T00:34:37,271         |   ^~
2025-09-08T00:34:40,188   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:34:40,188                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:34:40,188                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:34:40,188                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2025-09-08T00:34:40,188   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:40,188      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:40,188         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:40,189   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:40,189                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:34:40,189   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:40,189     117 |     struct unary_function
2025-09-08T00:34:40,189         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:43,837   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:34:43,838                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:34:43,838                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:34:43,838                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2025-09-08T00:34:43,838   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:43,838      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:43,838         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:43,838   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:43,838                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:34:43,839   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:43,839     117 |     struct unary_function
2025-09-08T00:34:43,839         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:47,356   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:34:47,356                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:34:47,357                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:34:47,357                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2025-09-08T00:34:47,357   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:47,357      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:47,357         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:47,357   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:47,357                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:34:47,357   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:47,357     117 |     struct unary_function
2025-09-08T00:34:47,358         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:51,037   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:34:51,037                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:34:51,037                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:34:51,037                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2025-09-08T00:34:51,037                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2025-09-08T00:34:51,037   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:51,037      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:51,037         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:51,038   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:51,038                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2025-09-08T00:34:51,038   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:51,039     117 |     struct unary_function
2025-09-08T00:34:51,039         |            ^~~~~~~~~~~~~~
2025-09-08T00:34:56,108   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:34:56,108                    from ./base//sbml/Model.h:446,
2025-09-08T00:34:56,108                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2025-09-08T00:34:56,109   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:34:56,109      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:34:56,109         |                           ^~~~~~~~~~~~~~
2025-09-08T00:34:56,109   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:34:56,110                    from ./base//sbml/Model.h:444:
2025-09-08T00:34:56,110   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:34:56,110     117 |     struct unary_function
2025-09-08T00:34:56,110         |            ^~~~~~~~~~~~~~
2025-09-08T00:35:00,028   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:35:00,028                    from ./base//sbml/Model.h:446,
2025-09-08T00:35:00,028                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2025-09-08T00:35:00,029   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:35:00,029      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:35:00,029         |                           ^~~~~~~~~~~~~~
2025-09-08T00:35:00,029   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:35:00,030                    from ./base//sbml/Model.h:444:
2025-09-08T00:35:00,030   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:35:00,030     117 |     struct unary_function
2025-09-08T00:35:00,030         |            ^~~~~~~~~~~~~~
2025-09-08T00:35:03,923   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:35:03,923                    from ./base//sbml/Model.h:446,
2025-09-08T00:35:03,923                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2025-09-08T00:35:03,923   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:35:03,923      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:35:03,924         |                           ^~~~~~~~~~~~~~
2025-09-08T00:35:03,924   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:35:03,924                    from ./base//sbml/Model.h:444:
2025-09-08T00:35:03,924   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:35:03,924     117 |     struct unary_function
2025-09-08T00:35:03,924         |            ^~~~~~~~~~~~~~
2025-09-08T00:35:04,302   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T00:35:04,303   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:35:04,303      74 |   if (&orig == NULL)
2025-09-08T00:35:04,303         |             ^
2025-09-08T00:35:04,303   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2025-09-08T00:35:04,303      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2025-09-08T00:35:04,303         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:35:04,305   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T00:35:04,305   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:35:04,306     138 |   if (&rhs == NULL)
2025-09-08T00:35:04,306         |            ^
2025-09-08T00:35:04,306   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2025-09-08T00:35:04,306     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2025-09-08T00:35:04,306         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:35:04,728   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T00:35:04,728   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:35:04,728      74 |   if (&orig == NULL)
2025-09-08T00:35:04,728         |   ^~
2025-09-08T00:35:04,729   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T00:35:04,729   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:35:04,729     138 |   if (&rhs == NULL)
2025-09-08T00:35:04,729         |   ^~
2025-09-08T00:35:07,664   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:35:07,664                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:35:07,664                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2025-09-08T00:35:07,664   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:35:07,664      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:35:07,664         |                           ^~~~~~~~~~~~~~
2025-09-08T00:35:07,665   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:35:07,665                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T00:35:07,665   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:35:07,665     117 |     struct unary_function
2025-09-08T00:35:07,665         |            ^~~~~~~~~~~~~~
2025-09-08T00:35:19,356   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T00:35:19,356   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2025-09-08T00:35:19,356      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T00:35:19,356         |                       ^
2025-09-08T00:35:19,356   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2025-09-08T00:35:19,357      48 | IdList::IdList(const std::string& commaSeparated)
2025-09-08T00:35:19,357         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T00:35:19,597   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T00:35:19,597   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:35:19,597      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T00:35:19,597         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T00:35:29,799   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:35:29,799                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:35:29,799                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2025-09-08T00:35:29,799   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:35:29,799      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:35:29,799         |                           ^~~~~~~~~~~~~~
2025-09-08T00:35:29,799   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:35:29,799                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T00:35:29,800   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:35:29,800     117 |     struct unary_function
2025-09-08T00:35:29,800         |            ^~~~~~~~~~~~~~
2025-09-08T00:35:39,759   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:35:39,759                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:35:39,759                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2025-09-08T00:35:39,759   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:35:39,759      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:35:39,759         |                           ^~~~~~~~~~~~~~
2025-09-08T00:35:39,760   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:35:39,760                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T00:35:39,760   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:35:39,760     117 |     struct unary_function
2025-09-08T00:35:39,760         |            ^~~~~~~~~~~~~~
2025-09-08T00:35:44,107   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:35:44,108                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:35:44,108                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2025-09-08T00:35:44,108   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:35:44,108      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:35:44,108         |                           ^~~~~~~~~~~~~~
2025-09-08T00:35:44,109   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:35:44,109                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T00:35:44,109   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:35:44,109     117 |     struct unary_function
2025-09-08T00:35:44,109         |            ^~~~~~~~~~~~~~
2025-09-08T00:35:50,869   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:35:50,869                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:35:50,869                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2025-09-08T00:35:50,870                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2025-09-08T00:35:50,870   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:35:50,870      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:35:50,870         |                           ^~~~~~~~~~~~~~
2025-09-08T00:35:50,870   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:35:50,870                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T00:35:50,870                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2025-09-08T00:35:50,870                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2025-09-08T00:35:50,870   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:35:50,871     117 |     struct unary_function
2025-09-08T00:35:50,871         |            ^~~~~~~~~~~~~~
2025-09-08T00:35:56,165   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:35:56,165                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:35:56,165                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2025-09-08T00:35:56,166                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2025-09-08T00:35:56,166   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:35:56,166      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:35:56,166         |                           ^~~~~~~~~~~~~~
2025-09-08T00:35:56,166   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:35:56,166                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T00:35:56,166                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2025-09-08T00:35:56,166                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2025-09-08T00:35:56,166   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:35:56,167     117 |     struct unary_function
2025-09-08T00:35:56,167         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:01,809   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:36:01,809                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:36:01,809                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2025-09-08T00:36:01,809                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2025-09-08T00:36:01,809   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:01,809      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:01,809         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:01,810   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:01,810                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T00:36:01,810                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2025-09-08T00:36:01,810                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2025-09-08T00:36:01,810   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:01,811     117 |     struct unary_function
2025-09-08T00:36:01,811         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:07,169   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:36:07,169                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:36:07,169                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2025-09-08T00:36:07,170                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2025-09-08T00:36:07,170   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:07,170      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:07,170         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:07,170   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:07,170                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T00:36:07,170                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2025-09-08T00:36:07,170                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2025-09-08T00:36:07,170   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:07,170     117 |     struct unary_function
2025-09-08T00:36:07,171         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:12,291   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:36:12,291                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:36:12,291                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2025-09-08T00:36:12,291                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2025-09-08T00:36:12,292   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:12,292      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:12,292         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:12,292   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:12,292                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T00:36:12,293                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2025-09-08T00:36:12,293                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2025-09-08T00:36:12,293   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:12,293     117 |     struct unary_function
2025-09-08T00:36:12,293         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:17,376   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:36:17,376                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:36:17,376                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:36:17,376                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2025-09-08T00:36:17,376                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2025-09-08T00:36:17,377   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:17,377      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:17,377         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:17,377   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:17,378                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T00:36:17,378                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2025-09-08T00:36:17,378                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2025-09-08T00:36:17,378   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:17,378     117 |     struct unary_function
2025-09-08T00:36:17,378         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:21,230   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:36:21,230                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:36:21,230                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2025-09-08T00:36:21,230   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:21,230      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:21,230         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:21,231   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:21,231                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T00:36:21,231   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:21,231     117 |     struct unary_function
2025-09-08T00:36:21,231         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:24,799   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:36:24,800                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:36:24,800                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2025-09-08T00:36:24,800   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:24,800      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:24,800         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:24,801   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:24,801                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T00:36:24,801   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:24,801     117 |     struct unary_function
2025-09-08T00:36:24,801         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:28,482   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:36:28,482                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:36:28,482                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2025-09-08T00:36:28,483   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:28,483      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:28,483         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:28,484   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:28,484                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T00:36:28,484   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:28,484     117 |     struct unary_function
2025-09-08T00:36:28,484         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:32,315   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:36:32,316                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:36:32,316                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:36:32,316                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:36:32,316                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T00:36:32,316                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2025-09-08T00:36:32,316                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2025-09-08T00:36:32,316   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:32,316      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:32,316         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:32,317   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:32,317                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:36:32,318                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:36:32,318                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2025-09-08T00:36:32,318   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:32,318     117 |     struct unary_function
2025-09-08T00:36:32,318         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:37,993   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:36:37,993                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:36:37,993                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:36:37,993                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:36:37,993                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T00:36:37,993                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2025-09-08T00:36:37,993                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2025-09-08T00:36:37,994   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:37,994      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:37,994         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:37,994   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:37,995                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:36:37,995                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:36:37,995                    from ./base//sbml/validator/SBMLInternalValidator.h:62:
2025-09-08T00:36:37,995   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:37,995     117 |     struct unary_function
2025-09-08T00:36:37,995         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:42,322   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:36:42,322                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T00:36:42,322                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T00:36:42,322                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T00:36:42,323                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T00:36:42,323                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2025-09-08T00:36:42,323   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:42,323      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:42,323         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:42,324   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:42,324                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:36:42,324                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:36:42,324                    from ./base//sbml/validator/SBMLValidator.h:73:
2025-09-08T00:36:42,324   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:42,324     117 |     struct unary_function
2025-09-08T00:36:42,324         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:42,561   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T00:36:42,562   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:36:42,562      59 |   if (&orig == NULL)
2025-09-08T00:36:42,562         |             ^
2025-09-08T00:36:42,562   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2025-09-08T00:36:42,562      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2025-09-08T00:36:42,562         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:36:42,564   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T00:36:42,564   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:36:42,564      87 |   if (&rhs == NULL)
2025-09-08T00:36:42,564         |            ^
2025-09-08T00:36:42,565   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2025-09-08T00:36:42,565      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2025-09-08T00:36:42,565         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:36:42,567   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T00:36:42,567   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T00:36:42,567     168 |   if (&msg == NULL) return;
2025-09-08T00:36:42,567         |            ^
2025-09-08T00:36:42,568   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2025-09-08T00:36:42,568     166 | SBMLValidator::logFailure (const SBMLError& msg)
2025-09-08T00:36:42,568         |                            ~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:36:42,568   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T00:36:42,569   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:36:42,569     182 |   if (&filename == NULL) return 0;
2025-09-08T00:36:42,569         |                 ^
2025-09-08T00:36:42,569   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2025-09-08T00:36:42,569     180 | SBMLValidator::validate (const std::string& filename)
2025-09-08T00:36:42,569         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:36:43,016   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T00:36:43,016   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:36:43,016      87 |   if (&rhs == NULL)
2025-09-08T00:36:43,016         |   ^~
2025-09-08T00:36:43,017   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T00:36:43,018   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:36:43,018      59 |   if (&orig == NULL)
2025-09-08T00:36:43,018         |   ^~
2025-09-08T00:36:43,022   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T00:36:43,022   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:36:43,022     168 |   if (&msg == NULL) return;
2025-09-08T00:36:43,022         |   ^~
2025-09-08T00:36:43,023   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T00:36:43,023   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:36:43,023     182 |   if (&filename == NULL) return 0;
2025-09-08T00:36:43,023         |   ^~
2025-09-08T00:36:46,024   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:36:46,024                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:36:46,024                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2025-09-08T00:36:46,024   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:46,024      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:46,024         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:46,025   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:46,025                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T00:36:46,025   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:46,025     117 |     struct unary_function
2025-09-08T00:36:46,026         |            ^~~~~~~~~~~~~~
2025-09-08T00:36:52,781   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:36:52,781                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:36:52,781                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2025-09-08T00:36:52,781   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:36:52,781      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:36:52,781         |                           ^~~~~~~~~~~~~~
2025-09-08T00:36:52,782   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:36:52,782                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T00:36:52,782   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:36:52,782     117 |     struct unary_function
2025-09-08T00:36:52,782         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:01,673   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:37:01,673                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:37:01,674                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:37:01,674                    from ./base/sbml/validator/VConstraint.cpp:33:
2025-09-08T00:37:01,674   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:01,674      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:01,674         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:01,675   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:01,675                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:37:01,675   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:01,675     117 |     struct unary_function
2025-09-08T00:37:01,675         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:02,089   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2025-09-08T00:37:02,089   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2025-09-08T00:37:02,089      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T00:37:02,089         |               ^
2025-09-08T00:37:02,089   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2025-09-08T00:37:02,090      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T00:37:02,090         |                          ~~~~~~~~~~~~~^~~~~~
2025-09-08T00:37:02,090   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2025-09-08T00:37:02,090      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T00:37:02,090         |                                   ^
2025-09-08T00:37:02,090   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2025-09-08T00:37:02,090      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T00:37:02,091         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:37:02,474   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:37:02,474      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T00:37:02,474         |               ^
2025-09-08T00:37:02,475   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:37:02,475      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T00:37:02,475         |                                   ^
2025-09-08T00:37:05,208   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2025-09-08T00:37:05,208                    from ./base/sbml/validator/Validator.cpp:39:
2025-09-08T00:37:05,208   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:05,208      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:05,208         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:05,209   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:37:05,209                    from ./base/sbml/validator/Validator.cpp:34:
2025-09-08T00:37:05,209   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:05,209     117 |     struct unary_function
2025-09-08T00:37:05,209         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:05,742   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:05,743      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T00:37:05,743         |                       ^~~~~~~~~~~~~~
2025-09-08T00:37:05,743   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:05,743     117 |     struct unary_function
2025-09-08T00:37:05,743         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:06,108   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T00:37:06,109   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T00:37:06,109     709 |   if (&msg == NULL) return;
2025-09-08T00:37:06,109         |            ^
2025-09-08T00:37:06,109   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2025-09-08T00:37:06,109     707 | Validator::logFailure (const SBMLError& msg)
2025-09-08T00:37:06,109         |                        ~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:37:06,111   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T00:37:06,111   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T00:37:06,111     754 |   if (&d == NULL) return 0;
2025-09-08T00:37:06,111         |          ^
2025-09-08T00:37:06,112   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2025-09-08T00:37:06,112     752 | Validator::validate (const SBMLDocument& d)
2025-09-08T00:37:06,112         |                      ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T00:37:06,118   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T00:37:06,118   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:37:06,118     815 |   if (&filename == NULL) return 0;
2025-09-08T00:37:06,118         |                 ^
2025-09-08T00:37:06,118   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2025-09-08T00:37:06,118     813 | Validator::validate (const std::string& filename)
2025-09-08T00:37:06,119         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:37:07,402   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T00:37:07,402   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:37:07,402     709 |   if (&msg == NULL) return;
2025-09-08T00:37:07,402         |   ^~
2025-09-08T00:37:07,423   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T00:37:07,423   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:37:07,423     754 |   if (&d == NULL) return 0;
2025-09-08T00:37:07,423         |   ^~
2025-09-08T00:37:07,424   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T00:37:07,424   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:37:07,424     815 |   if (&filename == NULL) return 0;
2025-09-08T00:37:07,424         |   ^~
2025-09-08T00:37:13,707   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:13,708                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:13,708                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2025-09-08T00:37:13,708   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:13,708      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:13,708         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:13,709   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:13,709                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:13,709   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:13,709     117 |     struct unary_function
2025-09-08T00:37:13,709         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:17,897   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:17,897                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:17,897                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2025-09-08T00:37:17,897   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:17,897      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:17,897         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:17,898   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:17,898                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:17,898   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:17,898     117 |     struct unary_function
2025-09-08T00:37:17,899         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:21,809   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:21,809                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:21,809                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2025-09-08T00:37:21,809   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:21,810      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:21,810         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:21,810   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:21,811                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:21,811   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:21,811     117 |     struct unary_function
2025-09-08T00:37:21,811         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:29,801   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:29,801                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:29,801                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2025-09-08T00:37:29,801   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:29,801      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:29,801         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:29,802   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:29,802                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:29,802   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:29,802     117 |     struct unary_function
2025-09-08T00:37:29,802         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:34,192   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:34,192                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:34,192                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2025-09-08T00:37:34,192   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:34,192      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:34,192         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:34,193   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:34,193                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:34,193   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:34,193     117 |     struct unary_function
2025-09-08T00:37:34,194         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:34,514   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:37:34,514   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:37:34,515     104 |   if (&(node) == NULL)
2025-09-08T00:37:34,515         |               ^
2025-09-08T00:37:34,515   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2025-09-08T00:37:34,515     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:37:34,515         |                                                ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:37:34,934   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:37:34,934     104 |   if (&(node) == NULL)
2025-09-08T00:37:34,934         |   ^~
2025-09-08T00:37:38,179   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:38,180                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:38,180                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2025-09-08T00:37:38,180   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:38,180      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:38,180         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:38,181   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:38,181                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:38,181   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:38,181     117 |     struct unary_function
2025-09-08T00:37:38,181         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:38,509   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:38,509     119 | struct CycleContains : public unary_function<IdList, bool>
2025-09-08T00:37:38,510         |                               ^~~~~~~~~~~~~~
2025-09-08T00:37:38,510   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:38,510     117 |     struct unary_function
2025-09-08T00:37:38,510         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:43,414   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:37:43,414                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:37:43,414                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:37:43,414                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2025-09-08T00:37:43,414   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:43,414      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:43,415         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:43,415   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:43,415                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:37:43,416                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:37:43,416                    from ./base//sbml/SBO.h:196,
2025-09-08T00:37:43,416                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2025-09-08T00:37:43,416   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:43,416     117 |     struct unary_function
2025-09-08T00:37:43,416         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:47,218   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:47,218                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:47,218                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2025-09-08T00:37:47,218   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:47,218      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:47,218         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:47,219   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:47,219                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:47,219   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:47,219     117 |     struct unary_function
2025-09-08T00:37:47,219         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:51,806   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:51,806                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:51,806                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2025-09-08T00:37:51,806   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:51,806      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:51,806         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:51,807   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:51,807                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:51,807   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:51,807     117 |     struct unary_function
2025-09-08T00:37:51,808         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:52,125   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:37:52,125   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:37:52,125     101 |   if (&(node) == NULL)
2025-09-08T00:37:52,125         |               ^
2025-09-08T00:37:52,125   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2025-09-08T00:37:52,126      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:37:52,126         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:37:52,529   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:37:52,529     101 |   if (&(node) == NULL)
2025-09-08T00:37:52,530         |   ^~
2025-09-08T00:37:55,615   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:55,616                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:55,616                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2025-09-08T00:37:55,616   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:55,616      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:55,616         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:55,617   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:55,617                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:55,617   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:55,617     117 |     struct unary_function
2025-09-08T00:37:55,617         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:59,643   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:37:59,643                    from ./base//sbml/Model.h:446,
2025-09-08T00:37:59,643                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2025-09-08T00:37:59,643   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:37:59,643      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:37:59,643         |                           ^~~~~~~~~~~~~~
2025-09-08T00:37:59,644   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:37:59,644                    from ./base//sbml/Model.h:444:
2025-09-08T00:37:59,644   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:37:59,644     117 |     struct unary_function
2025-09-08T00:37:59,644         |            ^~~~~~~~~~~~~~
2025-09-08T00:37:59,961   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:37:59,961   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:37:59,961     103 |   if (&(node) == NULL)
2025-09-08T00:37:59,961         |               ^
2025-09-08T00:37:59,962   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2025-09-08T00:37:59,962     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:37:59,962         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:38:00,372   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:38:00,372     103 |   if (&(node) == NULL)
2025-09-08T00:38:00,373         |   ^~
2025-09-08T00:38:03,510   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:38:03,510                    from ./base//sbml/Model.h:446,
2025-09-08T00:38:03,510                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2025-09-08T00:38:03,510   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:03,510      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:03,510         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:03,511   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:03,511                    from ./base//sbml/Model.h:444:
2025-09-08T00:38:03,511   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:03,512     117 |     struct unary_function
2025-09-08T00:38:03,512         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:07,267   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:38:07,267                    from ./base//sbml/Model.h:446,
2025-09-08T00:38:07,267                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2025-09-08T00:38:07,267   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:07,267      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:07,268         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:07,268   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:07,268                    from ./base//sbml/Model.h:444:
2025-09-08T00:38:07,268   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:07,269     117 |     struct unary_function
2025-09-08T00:38:07,269         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:07,586   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:38:07,586   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:38:07,587     104 |   if (&(node) == NULL)
2025-09-08T00:38:07,587         |               ^
2025-09-08T00:38:07,587   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T00:38:07,587     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:38:07,587         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:38:08,000   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:38:08,000     104 |   if (&(node) == NULL)
2025-09-08T00:38:08,000         |   ^~
2025-09-08T00:38:11,210   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:38:11,210                    from ./base//sbml/Model.h:446,
2025-09-08T00:38:11,210                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2025-09-08T00:38:11,210   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:11,210      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:11,210         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:11,211   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:11,211                    from ./base//sbml/Model.h:444:
2025-09-08T00:38:11,212   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:11,212     117 |     struct unary_function
2025-09-08T00:38:11,212         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:15,103   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:38:15,103                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:38:15,104                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:38:15,104                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T00:38:15,104                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2025-09-08T00:38:15,104   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:15,104      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:15,104         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:15,105   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:15,105                    from ./base/sbml/validator/constraints/IdBase.h:42:
2025-09-08T00:38:15,105   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:15,105     117 |     struct unary_function
2025-09-08T00:38:15,105         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:18,817   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:38:18,817                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:38:18,817                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:38:18,817                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2025-09-08T00:38:18,818   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:18,818      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:18,818         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:18,819   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:18,819                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:38:18,819   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:18,819     117 |     struct unary_function
2025-09-08T00:38:18,819         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:22,550   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:38:22,550                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:38:22,550                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:38:22,550                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2025-09-08T00:38:22,550   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:22,551      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:22,551         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:22,551   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:22,552                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:38:22,552                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:38:22,552                    from ./base//sbml/SBO.h:196,
2025-09-08T00:38:22,552                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2025-09-08T00:38:22,552   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:22,552     117 |     struct unary_function
2025-09-08T00:38:22,552         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:26,119   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:38:26,119                    from ./base//sbml/Model.h:446,
2025-09-08T00:38:26,120                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2025-09-08T00:38:26,120   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:26,120      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:26,120         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:26,120   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:26,121                    from ./base//sbml/Model.h:444:
2025-09-08T00:38:26,121   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:26,121     117 |     struct unary_function
2025-09-08T00:38:26,121         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:30,645   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:38:30,645                    from ./base//sbml/Model.h:446,
2025-09-08T00:38:30,645                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2025-09-08T00:38:30,645   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:30,646      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:30,646         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:30,646   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:30,647                    from ./base//sbml/Model.h:444:
2025-09-08T00:38:30,647   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:30,647     117 |     struct unary_function
2025-09-08T00:38:30,647         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:34,668   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:38:34,668                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:38:34,668                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2025-09-08T00:38:34,668   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:34,668      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:34,669         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:34,669   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:34,670                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:38:34,670                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:38:34,670                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:38:34,670                    from ./base//sbml/SBase.h:145,
2025-09-08T00:38:34,670                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2025-09-08T00:38:34,670   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:34,670     117 |     struct unary_function
2025-09-08T00:38:34,670         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:38,168   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:38:38,168                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:38:38,168                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2025-09-08T00:38:38,168   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:38,168      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:38,169         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:38,169   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:38,170                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:38:38,170                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:38:38,170                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:38:38,170                    from ./base//sbml/SBase.h:145,
2025-09-08T00:38:38,170                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2025-09-08T00:38:38,170   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:38,170     117 |     struct unary_function
2025-09-08T00:38:38,170         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:41,666   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:38:41,666                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:38:41,667                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2025-09-08T00:38:41,667   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:41,667      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:41,667         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:41,668   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:41,668                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:38:41,668                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:38:41,668                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:38:41,668                    from ./base//sbml/SBase.h:145,
2025-09-08T00:38:41,668                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2025-09-08T00:38:41,668   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:41,668     117 |     struct unary_function
2025-09-08T00:38:41,668         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:45,180   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:38:45,180                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:38:45,181                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2025-09-08T00:38:45,181   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:45,181      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:45,181         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:45,182   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:45,182                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:38:45,182                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:38:45,182                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:38:45,182                    from ./base//sbml/SBase.h:145,
2025-09-08T00:38:45,182                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2025-09-08T00:38:45,182   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:45,183     117 |     struct unary_function
2025-09-08T00:38:45,183         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:48,691   In file included from ./base//sbml/Rule.h:140,
2025-09-08T00:38:48,691                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T00:38:48,691                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2025-09-08T00:38:48,691   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:48,691      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:48,691         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:48,692   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:48,692                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:38:48,692                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:38:48,692                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:38:48,693                    from ./base//sbml/SBase.h:145,
2025-09-08T00:38:48,693                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2025-09-08T00:38:48,693   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:48,693     117 |     struct unary_function
2025-09-08T00:38:48,693         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:52,254   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:38:52,254                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:38:52,254                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:38:52,255                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2025-09-08T00:38:52,255   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:52,255      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:52,255         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:52,256   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:52,256                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:38:52,256                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:38:52,256                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:38:52,256                    from ./base//sbml/SBase.h:145,
2025-09-08T00:38:52,256                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2025-09-08T00:38:52,256   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:52,256     117 |     struct unary_function
2025-09-08T00:38:52,256         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:55,881   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:38:55,881                    from ./base//sbml/Model.h:446,
2025-09-08T00:38:55,881                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2025-09-08T00:38:55,882   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:55,882      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:55,882         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:55,882   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:55,882                    from ./base//sbml/Model.h:444:
2025-09-08T00:38:55,882   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:55,883     117 |     struct unary_function
2025-09-08T00:38:55,883         |            ^~~~~~~~~~~~~~
2025-09-08T00:38:56,206   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:38:56,207   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:38:56,207     104 |   if (&(node) == NULL)
2025-09-08T00:38:56,207         |               ^
2025-09-08T00:38:56,207   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2025-09-08T00:38:56,207     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:38:56,207         |                                             ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:38:56,607   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:38:56,607     104 |   if (&(node) == NULL)
2025-09-08T00:38:56,608         |   ^~
2025-09-08T00:38:59,777   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:38:59,777                    from ./base//sbml/Model.h:446,
2025-09-08T00:38:59,777                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2025-09-08T00:38:59,777   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:38:59,777      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:38:59,777         |                           ^~~~~~~~~~~~~~
2025-09-08T00:38:59,778   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:38:59,778                    from ./base//sbml/Model.h:444:
2025-09-08T00:38:59,778   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:38:59,778     117 |     struct unary_function
2025-09-08T00:38:59,779         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:00,096   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:39:00,096   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:39:00,096     104 |   if (&(node) == NULL)
2025-09-08T00:39:00,096         |               ^
2025-09-08T00:39:00,096   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T00:39:00,096     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:39:00,097         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:39:00,512   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:39:00,512     104 |   if (&(node) == NULL)
2025-09-08T00:39:00,512         |   ^~
2025-09-08T00:39:03,725   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:03,725                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:03,725                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2025-09-08T00:39:03,725   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:03,725      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:03,725         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:03,726   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:03,726                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:03,726   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:03,726     117 |     struct unary_function
2025-09-08T00:39:03,726         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:08,120   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:08,120                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:08,120                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2025-09-08T00:39:08,120   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:08,120      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:08,120         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:08,121   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:08,121                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:08,121   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:08,121     117 |     struct unary_function
2025-09-08T00:39:08,122         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:08,442   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:39:08,442   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:39:08,442     100 |   if (&(node) == NULL)
2025-09-08T00:39:08,442         |               ^
2025-09-08T00:39:08,442   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2025-09-08T00:39:08,442      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:39:08,442         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:39:08,845   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:39:08,845     100 |   if (&(node) == NULL)
2025-09-08T00:39:08,845         |   ^~
2025-09-08T00:39:11,934   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:11,935                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:11,935                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2025-09-08T00:39:11,935   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:11,935      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:11,935         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:11,936   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:11,936                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:11,936   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:11,936     117 |     struct unary_function
2025-09-08T00:39:11,936         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:16,220   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:39:16,220                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:39:16,220                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:39:16,220                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2025-09-08T00:39:16,220   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:16,220      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:16,220         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:16,221   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:16,221                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:39:16,221   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:16,221     117 |     struct unary_function
2025-09-08T00:39:16,221         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:19,627   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:39:19,627                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:39:19,628                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:39:19,628                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2025-09-08T00:39:19,628   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:19,628      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:19,628         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:19,629   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:19,629                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T00:39:19,629   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:19,629     117 |     struct unary_function
2025-09-08T00:39:19,629         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:23,233   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:23,233                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:23,233                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2025-09-08T00:39:23,233   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:23,233      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:23,233         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:23,234   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:23,234                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:23,234   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:23,235     117 |     struct unary_function
2025-09-08T00:39:23,235         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:23,551   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:39:23,551   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:39:23,551     100 |   if (&(node) == NULL)
2025-09-08T00:39:23,551         |               ^
2025-09-08T00:39:23,552   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2025-09-08T00:39:23,552      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:39:23,552         |                                                 ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:39:23,969   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:39:23,969     100 |   if (&(node) == NULL)
2025-09-08T00:39:23,969         |   ^~
2025-09-08T00:39:27,226   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:27,226                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:27,226                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2025-09-08T00:39:27,226   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:27,226      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:27,226         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:27,227   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:27,227                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:27,227   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:27,227     117 |     struct unary_function
2025-09-08T00:39:27,227         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:27,544   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:39:27,545   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:39:27,545     105 |   if (&(node) == NULL)
2025-09-08T00:39:27,545         |               ^
2025-09-08T00:39:27,545   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2025-09-08T00:39:27,545     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:39:27,545         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:39:27,950   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:39:27,951     105 |   if (&(node) == NULL)
2025-09-08T00:39:27,951         |   ^~
2025-09-08T00:39:31,041   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:31,041                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:31,041                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2025-09-08T00:39:31,041   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:31,041      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:31,041         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:31,042   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:31,042                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:31,042   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:31,042     117 |     struct unary_function
2025-09-08T00:39:31,043         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:31,360   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:39:31,360   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:39:31,360     104 |   if (&(node) == NULL)
2025-09-08T00:39:31,360         |               ^
2025-09-08T00:39:31,360   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2025-09-08T00:39:31,360     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:39:31,360         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:39:31,761   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:39:31,761     104 |   if (&(node) == NULL)
2025-09-08T00:39:31,761         |   ^~
2025-09-08T00:39:34,827   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:34,827                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:34,827                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2025-09-08T00:39:34,827   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:34,827      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:34,827         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:34,828   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:34,828                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:34,828   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:34,828     117 |     struct unary_function
2025-09-08T00:39:34,829         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:37,472   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2025-09-08T00:39:37,472   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2025-09-08T00:39:37,472     188 |       sprintf(react, "KL_%u", n);
2025-09-08T00:39:37,472         |                          ^~
2025-09-08T00:39:37,472   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2025-09-08T00:39:37,473     188 |       sprintf(react, "KL_%u", n);
2025-09-08T00:39:37,473         |                      ^~~~~~~
2025-09-08T00:39:37,473   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2025-09-08T00:39:37,473     188 |       sprintf(react, "KL_%u", n);
2025-09-08T00:39:37,473         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:39:37,474   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2025-09-08T00:39:37,474     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T00:39:37,474         |                         ^~
2025-09-08T00:39:37,474   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2025-09-08T00:39:37,474     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T00:39:37,475         |                   ^~~~~~~~~
2025-09-08T00:39:37,475   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2025-09-08T00:39:37,475     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T00:39:37,475         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T00:39:48,349   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:39:48,349                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:39:48,349                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:39:48,349                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2025-09-08T00:39:48,349                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2025-09-08T00:39:48,349   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:48,349      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:48,349         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:48,350   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:48,350                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2025-09-08T00:39:48,350   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:48,351     117 |     struct unary_function
2025-09-08T00:39:48,351         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:51,904   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:51,904                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:51,904                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2025-09-08T00:39:51,904   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:51,904      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:51,905         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:51,905   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:51,905                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:51,906   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:51,906     117 |     struct unary_function
2025-09-08T00:39:51,906         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:52,223   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:39:52,223   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:39:52,223     100 |   if (&(node) == NULL)
2025-09-08T00:39:52,223         |               ^
2025-09-08T00:39:52,223   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2025-09-08T00:39:52,223      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:39:52,224         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:39:52,627   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:39:52,628     100 |   if (&(node) == NULL)
2025-09-08T00:39:52,628         |   ^~
2025-09-08T00:39:55,717   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:55,717                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:55,717                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2025-09-08T00:39:55,717   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:55,717      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:55,717         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:55,718   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:55,718                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:55,718   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:55,718     117 |     struct unary_function
2025-09-08T00:39:55,718         |            ^~~~~~~~~~~~~~
2025-09-08T00:39:56,035   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:39:56,035   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:39:56,035     103 |   if (&(node) == NULL)
2025-09-08T00:39:56,035         |               ^
2025-09-08T00:39:56,036   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2025-09-08T00:39:56,036     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:39:56,036         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:39:56,440   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:39:56,440     103 |   if (&(node) == NULL)
2025-09-08T00:39:56,440         |   ^~
2025-09-08T00:39:59,548   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:39:59,548                    from ./base//sbml/Model.h:446,
2025-09-08T00:39:59,548                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2025-09-08T00:39:59,548   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:39:59,548      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:39:59,548         |                           ^~~~~~~~~~~~~~
2025-09-08T00:39:59,549   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:39:59,549                    from ./base//sbml/Model.h:444:
2025-09-08T00:39:59,550   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:39:59,550     117 |     struct unary_function
2025-09-08T00:39:59,550         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:04,159   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:40:04,159                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:40:04,159                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:40:04,159                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2025-09-08T00:40:04,159   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:04,159      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:04,159         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:04,160   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:04,160                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:40:04,160                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:40:04,161                    from ./base//sbml/SBO.h:196,
2025-09-08T00:40:04,161                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2025-09-08T00:40:04,161   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:04,161     117 |     struct unary_function
2025-09-08T00:40:04,161         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:07,833   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:07,834                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:07,834                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2025-09-08T00:40:07,834   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:07,834      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:07,834         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:07,835   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:07,835                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:07,835   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:07,835     117 |     struct unary_function
2025-09-08T00:40:07,835         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:11,909   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:11,910                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:11,910                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2025-09-08T00:40:11,910   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:11,910      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:11,910         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:11,911   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:11,911                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:11,911   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:11,911     117 |     struct unary_function
2025-09-08T00:40:11,911         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:16,201   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:40:16,201                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:40:16,201                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:40:16,201                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T00:40:16,201                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2025-09-08T00:40:16,201                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2025-09-08T00:40:16,201   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:16,201      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:16,201         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:16,202   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:16,202                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T00:40:16,203                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T00:40:16,203                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T00:40:16,203                    from ./base//sbml/SBase.h:145,
2025-09-08T00:40:16,203                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2025-09-08T00:40:16,203   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:16,203     117 |     struct unary_function
2025-09-08T00:40:16,203         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:20,741   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:20,741                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:20,741                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2025-09-08T00:40:20,742   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:20,742      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:20,742         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:20,742   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:20,742                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:20,743   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:20,743     117 |     struct unary_function
2025-09-08T00:40:20,743         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:24,584   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:24,585                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:24,585                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2025-09-08T00:40:24,585   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:24,585      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:24,585         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:24,586   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:24,586                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:24,586   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:24,586     117 |     struct unary_function
2025-09-08T00:40:24,586         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:28,181   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:28,181                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:28,181                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2025-09-08T00:40:28,181   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:28,181      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:28,181         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:28,182   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:28,182                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:28,182   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:28,182     117 |     struct unary_function
2025-09-08T00:40:28,182         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:31,772   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:40:31,772                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:40:31,772                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:40:31,772                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2025-09-08T00:40:31,773                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2025-09-08T00:40:31,773   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:31,773      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:31,773         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:31,774   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:31,774                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2025-09-08T00:40:31,774   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:31,774     117 |     struct unary_function
2025-09-08T00:40:31,774         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:36,704   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:36,704                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:36,704                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2025-09-08T00:40:36,704   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:36,704      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:36,704         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:36,705   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:36,705                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:36,705   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:36,706     117 |     struct unary_function
2025-09-08T00:40:36,706         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:40,894   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:40,895                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:40,895                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2025-09-08T00:40:40,895   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:40,895      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:40,895         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:40,896   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:40,896                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:40,896   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:40,896     117 |     struct unary_function
2025-09-08T00:40:40,896         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:44,471   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:44,471                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:44,471                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2025-09-08T00:40:44,471   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:44,471      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:44,471         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:44,472   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:44,472                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:44,472   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:44,472     117 |     struct unary_function
2025-09-08T00:40:44,472         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:48,138   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:48,138                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:48,138                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2025-09-08T00:40:48,139   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:48,139      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:48,139         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:48,139   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:48,140                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:48,140   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:48,140     117 |     struct unary_function
2025-09-08T00:40:48,140         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:51,826   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:51,826                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:51,826                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2025-09-08T00:40:51,826   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:51,826      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:51,826         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:51,827   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:51,827                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:51,827   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:51,828     117 |     struct unary_function
2025-09-08T00:40:51,828         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:55,506   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:40:55,506                    from ./base//sbml/Model.h:446,
2025-09-08T00:40:55,506                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2025-09-08T00:40:55,507   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:55,507      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:55,507         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:55,507   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:55,507                    from ./base//sbml/Model.h:444:
2025-09-08T00:40:55,507   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:55,507     117 |     struct unary_function
2025-09-08T00:40:55,507         |            ^~~~~~~~~~~~~~
2025-09-08T00:40:59,147   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T00:40:59,148                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T00:40:59,148                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T00:40:59,148                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2025-09-08T00:40:59,148   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:40:59,148      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:40:59,148         |                           ^~~~~~~~~~~~~~
2025-09-08T00:40:59,149   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:40:59,149                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T00:40:59,149                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T00:40:59,149                    from ./base//sbml/SBO.h:196,
2025-09-08T00:40:59,149                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2025-09-08T00:40:59,150   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:40:59,150     117 |     struct unary_function
2025-09-08T00:40:59,150         |            ^~~~~~~~~~~~~~
2025-09-08T00:41:02,888   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:41:02,888                    from ./base//sbml/Model.h:446,
2025-09-08T00:41:02,889                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2025-09-08T00:41:02,889   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:41:02,889      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:41:02,889         |                           ^~~~~~~~~~~~~~
2025-09-08T00:41:02,889   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:41:02,889                    from ./base//sbml/Model.h:444:
2025-09-08T00:41:02,889   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:41:02,889     117 |     struct unary_function
2025-09-08T00:41:02,889         |            ^~~~~~~~~~~~~~
2025-09-08T00:41:06,827   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T00:41:06,827                    from ./base//sbml/Model.h:446,
2025-09-08T00:41:06,827                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2025-09-08T00:41:06,827   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:41:06,827      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T00:41:06,827         |                           ^~~~~~~~~~~~~~
2025-09-08T00:41:06,828   In file included from /usr/include/c++/14/string:49,
2025-09-08T00:41:06,828                    from ./base//sbml/Model.h:444:
2025-09-08T00:41:06,828   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:41:06,828     117 |     struct unary_function
2025-09-08T00:41:06,829         |            ^~~~~~~~~~~~~~
2025-09-08T00:41:07,144   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T00:41:07,144   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:41:07,145     100 |   if (&(node) == NULL)
2025-09-08T00:41:07,145         |               ^
2025-09-08T00:41:07,145   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2025-09-08T00:41:07,145      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T00:41:07,145         |                                               ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:07,547   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:07,547     100 |   if (&(node) == NULL)
2025-09-08T00:41:07,547         |   ^~
2025-09-08T00:41:18,276   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T00:41:18,277   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:41:18,277      90 |   if (&orig == NULL)
2025-09-08T00:41:18,277         |             ^
2025-09-08T00:41:18,277   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2025-09-08T00:41:18,277      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2025-09-08T00:41:18,277         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:18,281   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T00:41:18,281   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:41:18,281     110 |   if (&rhs == NULL)
2025-09-08T00:41:18,281         |            ^
2025-09-08T00:41:18,282   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2025-09-08T00:41:18,282     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2025-09-08T00:41:18,282         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:18,283   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:41:18,283   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:18,283     149 |   if (&name == NULL || &value == NULL
2025-09-08T00:41:18,283         |             ^
2025-09-08T00:41:18,283   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2025-09-08T00:41:18,284     144 | XMLAttributes::add (const std::string& name,
2025-09-08T00:41:18,284         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:18,284   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:18,284     149 |   if (&name == NULL || &value == NULL
2025-09-08T00:41:18,284         |                               ^
2025-09-08T00:41:18,284   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2025-09-08T00:41:18,284     145 |                     const std::string& value,
2025-09-08T00:41:18,284         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:18,284   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2025-09-08T00:41:18,285     150 |                     || &namespaceURI == NULL
2025-09-08T00:41:18,285         |                                      ^
2025-09-08T00:41:18,285   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2025-09-08T00:41:18,285     146 |                     const std::string& namespaceURI,
2025-09-08T00:41:18,285         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T00:41:18,285   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:41:18,285     151 |                     || &prefix == NULL)
2025-09-08T00:41:18,285         |                                ^
2025-09-08T00:41:18,285   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2025-09-08T00:41:18,285     147 |                     const std::string& prefix)
2025-09-08T00:41:18,286         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:18,286   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T00:41:18,286   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:18,286     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:18,286         |               ^
2025-09-08T00:41:18,286   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2025-09-08T00:41:18,286     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T00:41:18,286         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:18,286   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:18,287     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:18,287         |                                 ^
2025-09-08T00:41:18,287   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2025-09-08T00:41:18,287     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T00:41:18,287         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:18,291   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T00:41:18,291   ./base/sbml/xml/XMLAttributes.cpp:279:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:18,291     279 |   if (&name == NULL) return -1;
2025-09-08T00:41:18,291         |             ^
2025-09-08T00:41:18,292   ./base/sbml/xml/XMLAttributes.cpp:277:45: note: ‘name’ declared here
2025-09-08T00:41:18,292     277 | XMLAttributes::getIndex (const std::string& name) const
2025-09-08T00:41:18,292         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:18,293   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T00:41:18,293   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:18,293     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T00:41:18,293         |             ^
2025-09-08T00:41:18,293   ./base/sbml/xml/XMLAttributes.cpp:297:45: note: ‘name’ declared here
2025-09-08T00:41:18,293     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T00:41:18,293         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:18,293   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:41:18,294     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T00:41:18,294         |                             ^
2025-09-08T00:41:18,294   ./base/sbml/xml/XMLAttributes.cpp:297:70: note: ‘uri’ declared here
2025-09-08T00:41:18,294     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T00:41:18,294         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:18,295   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T00:41:18,295   ./base/sbml/xml/XMLAttributes.cpp:318:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:18,295     318 |   if (&triple  == NULL) return -1;
2025-09-08T00:41:18,295         |                ^
2025-09-08T00:41:18,295   ./base/sbml/xml/XMLAttributes.cpp:316:43: note: ‘triple’ declared here
2025-09-08T00:41:18,295     316 | XMLAttributes::getIndex (const XMLTriple& triple) const
2025-09-08T00:41:18,295         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:18,300   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,301   ./base/sbml/xml/XMLAttributes.cpp:539:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:18,301     539 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T00:41:18,301         |                ^
2025-09-08T00:41:18,301   ./base/sbml/xml/XMLAttributes.cpp:527:41: note: ‘value’ declared here
2025-09-08T00:41:18,301     527 |                          , bool&        value
2025-09-08T00:41:18,301         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:18,303   ./base/sbml/xml/XMLAttributes.cpp:558:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:18,303     558 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T00:41:18,303         |                                          ^
2025-09-08T00:41:18,303   ./base/sbml/xml/XMLAttributes.cpp:526:47: note: ‘name’ declared here
2025-09-08T00:41:18,303     526 |                          , const std::string& name
2025-09-08T00:41:18,303         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:18,304   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,304   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:18,304     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T00:41:18,304         |               ^
2025-09-08T00:41:18,305   ./base/sbml/xml/XMLAttributes.cpp:609:45: note: ‘triple’ declared here
2025-09-08T00:41:18,305     609 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:41:18,305         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:18,305   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:18,305     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T00:41:18,305         |                                 ^
2025-09-08T00:41:18,305   ./base/sbml/xml/XMLAttributes.cpp:610:45: note: ‘value’ declared here
2025-09-08T00:41:18,305     610 |                          , bool&            value
2025-09-08T00:41:18,305         |                            ~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:18,306   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,306   ./base/sbml/xml/XMLAttributes.cpp:653:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:18,306     653 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T00:41:18,306         |                 ^
2025-09-08T00:41:18,306   ./base/sbml/xml/XMLAttributes.cpp:641:41: note: ‘value’ declared here
2025-09-08T00:41:18,306     641 |                          , double&      value
2025-09-08T00:41:18,306         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:18,309   ./base/sbml/xml/XMLAttributes.cpp:701:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:18,309     701 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T00:41:18,309         |                                          ^
2025-09-08T00:41:18,309   ./base/sbml/xml/XMLAttributes.cpp:640:47: note: ‘name’ declared here
2025-09-08T00:41:18,309     640 |                          , const std::string& name
2025-09-08T00:41:18,309         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:18,311   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,311   ./base/sbml/xml/XMLAttributes.cpp:799:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:18,311     799 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T00:41:18,311         |                                     ^
2025-09-08T00:41:18,311   ./base/sbml/xml/XMLAttributes.cpp:787:41: note: ‘value’ declared here
2025-09-08T00:41:18,312     787 |                          , long&        value
2025-09-08T00:41:18,312         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:18,312   ./base/sbml/xml/XMLAttributes.cpp:819:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:18,312     819 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T00:41:18,312         |                                          ^
2025-09-08T00:41:18,312   ./base/sbml/xml/XMLAttributes.cpp:786:65: note: ‘name’ declared here
2025-09-08T00:41:18,312     786 |                                            , const std::string& name
2025-09-08T00:41:18,312         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:18,313   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,313   ./base/sbml/xml/XMLAttributes.cpp:854:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:18,313     854 |   if (&triple == NULL) return false;
2025-09-08T00:41:18,313         |               ^
2025-09-08T00:41:18,313   ./base/sbml/xml/XMLAttributes.cpp:847:45: note: ‘triple’ declared here
2025-09-08T00:41:18,313     847 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:41:18,313         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:18,314   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,315   ./base/sbml/xml/XMLAttributes.cpp:943:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:18,315     943 |   if (&triple == NULL) return false;
2025-09-08T00:41:18,315         |               ^
2025-09-08T00:41:18,315   ./base/sbml/xml/XMLAttributes.cpp:936:45: note: ‘triple’ declared here
2025-09-08T00:41:18,315     936 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:41:18,315         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:18,316   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,316   ./base/sbml/xml/XMLAttributes.cpp:1035:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:18,317    1035 |   if (&triple == NULL) return false;
2025-09-08T00:41:18,317         |               ^
2025-09-08T00:41:18,317   ./base/sbml/xml/XMLAttributes.cpp:1028:45: note: ‘triple’ declared here
2025-09-08T00:41:18,317    1028 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:41:18,317         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:18,318   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,318   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:18,318    1089 |   if ( index != -1 && &value != NULL)
2025-09-08T00:41:18,318         |                              ^
2025-09-08T00:41:18,318   ./base/sbml/xml/XMLAttributes.cpp:1081:41: note: ‘value’ declared here
2025-09-08T00:41:18,318    1081 |                          , std::string& value
2025-09-08T00:41:18,318         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:18,319   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:18,319    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T00:41:18,319         |                                                      ^
2025-09-08T00:41:18,319   ./base/sbml/xml/XMLAttributes.cpp:1080:47: note: ‘name’ declared here
2025-09-08T00:41:18,319    1080 |                          , const std::string& name
2025-09-08T00:41:18,319         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:18,319   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,319   ./base/sbml/xml/XMLAttributes.cpp:1125:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:18,319    1125 |   if (&triple == NULL) return false;
2025-09-08T00:41:18,320         |               ^
2025-09-08T00:41:18,320   ./base/sbml/xml/XMLAttributes.cpp:1118:45: note: ‘triple’ declared here
2025-09-08T00:41:18,320    1118 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T00:41:18,320         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:18,685   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T00:41:18,685   ./base/sbml/xml/XMLAttributes.cpp:318:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,685     318 |   if (&triple  == NULL) return -1;
2025-09-08T00:41:18,686         |   ^~
2025-09-08T00:41:18,697   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T00:41:18,697   ./base/sbml/xml/XMLAttributes.cpp:279:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,697     279 |   if (&name == NULL) return -1;
2025-09-08T00:41:18,697         |   ^~
2025-09-08T00:41:18,698   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T00:41:18,698   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,699     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T00:41:18,699         |             ^
2025-09-08T00:41:18,699   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,699     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T00:41:18,699         |                             ^
2025-09-08T00:41:18,710   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T00:41:18,710   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,711      90 |   if (&orig == NULL)
2025-09-08T00:41:18,711         |   ^~
2025-09-08T00:41:18,711   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T00:41:18,711   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,711     110 |   if (&rhs == NULL)
2025-09-08T00:41:18,711         |   ^~
2025-09-08T00:41:18,716   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:41:18,716   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,716     149 |   if (&name == NULL || &value == NULL
2025-09-08T00:41:18,716         |             ^
2025-09-08T00:41:18,716   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,716     149 |   if (&name == NULL || &value == NULL
2025-09-08T00:41:18,716         |                               ^
2025-09-08T00:41:18,716   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,717     150 |                     || &namespaceURI == NULL
2025-09-08T00:41:18,717         |                                      ^
2025-09-08T00:41:18,717   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,717     151 |                     || &prefix == NULL)
2025-09-08T00:41:18,717         |                                ^
2025-09-08T00:41:18,717   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T00:41:18,717   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,717     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:18,717         |               ^
2025-09-08T00:41:18,717   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,717     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:18,718         |                                 ^
2025-09-08T00:41:18,718   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,718   ./base/sbml/xml/XMLAttributes.cpp:558:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,718     558 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T00:41:18,719         |                                 ^
2025-09-08T00:41:18,719   ./base/sbml/xml/XMLAttributes.cpp:539:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,719     539 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T00:41:18,719         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:41:18,719   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,719   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,719     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T00:41:18,719         |               ^
2025-09-08T00:41:18,719   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,719     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T00:41:18,720         |                                 ^
2025-09-08T00:41:18,720   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,720   ./base/sbml/xml/XMLAttributes.cpp:701:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,720     701 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T00:41:18,720         |                                 ^
2025-09-08T00:41:18,720   ./base/sbml/xml/XMLAttributes.cpp:653:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,720     653 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T00:41:18,721         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:41:18,721   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,721   ./base/sbml/xml/XMLAttributes.cpp:819:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,721     819 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T00:41:18,721         |                                 ^
2025-09-08T00:41:18,722   ./base/sbml/xml/XMLAttributes.cpp:799:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,722     799 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T00:41:18,722         |                           ^
2025-09-08T00:41:18,722   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,722   ./base/sbml/xml/XMLAttributes.cpp:854:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,722     854 |   if (&triple == NULL) return false;
2025-09-08T00:41:18,722         |   ^~
2025-09-08T00:41:18,722   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,722   ./base/sbml/xml/XMLAttributes.cpp:943:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,723     943 |   if (&triple == NULL) return false;
2025-09-08T00:41:18,723         |   ^~
2025-09-08T00:41:18,723   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,723   ./base/sbml/xml/XMLAttributes.cpp:1035:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,723    1035 |   if (&triple == NULL) return false;
2025-09-08T00:41:18,723         |   ^~
2025-09-08T00:41:18,724   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,724   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,724    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T00:41:18,724         |                                                      ^
2025-09-08T00:41:18,724   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,724    1089 |   if ( index != -1 && &value != NULL)
2025-09-08T00:41:18,724         |                              ^
2025-09-08T00:41:18,725   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T00:41:18,725   ./base/sbml/xml/XMLAttributes.cpp:1125:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:18,725    1125 |   if (&triple == NULL) return false;
2025-09-08T00:41:18,725         |   ^~
2025-09-08T00:41:26,278   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T00:41:26,279   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T00:41:26,279     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T00:41:26,279         |                       ^
2025-09-08T00:41:26,279   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T00:41:26,279     322 |                     , const std::string& details
2025-09-08T00:41:26,279         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:41:26,280   ./base/sbml/xml/XMLError.cpp:382:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T00:41:26,280     382 |     if ( &details != NULL && !details.empty() )
2025-09-08T00:41:26,280         |                   ^
2025-09-08T00:41:26,281   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T00:41:26,281     322 |                     , const std::string& details
2025-09-08T00:41:26,281         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:41:26,281   ./base/sbml/xml/XMLError.cpp:403:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T00:41:26,281     403 |   if (&details == NULL)
2025-09-08T00:41:26,281         |                ^
2025-09-08T00:41:26,281   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T00:41:26,281     322 |                     , const std::string& details
2025-09-08T00:41:26,282         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:41:26,284   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T00:41:26,285   ./base/sbml/xml/XMLError.cpp:428:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:41:26,285     428 |   if (&orig == NULL)
2025-09-08T00:41:26,285         |             ^
2025-09-08T00:41:26,285   ./base/sbml/xml/XMLError.cpp:426:36: note: ‘orig’ declared here
2025-09-08T00:41:26,285     426 | XMLError::XMLError(const XMLError& orig)
2025-09-08T00:41:26,285         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:26,287   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T00:41:26,287   ./base/sbml/xml/XMLError.cpp:455:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:41:26,287     455 |   if (&rhs == NULL)
2025-09-08T00:41:26,287         |            ^
2025-09-08T00:41:26,287   ./base/sbml/xml/XMLError.cpp:453:37: note: ‘rhs’ declared here
2025-09-08T00:41:26,288     453 | XMLError::operator=(const XMLError& rhs)
2025-09-08T00:41:26,288         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:26,627   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T00:41:26,627   ./base/sbml/xml/XMLError.cpp:428:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:26,627     428 |   if (&orig == NULL)
2025-09-08T00:41:26,628         |   ^~
2025-09-08T00:41:26,628   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T00:41:26,628   ./base/sbml/xml/XMLError.cpp:455:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:26,628     455 |   if (&rhs == NULL)
2025-09-08T00:41:26,628         |   ^~
2025-09-08T00:41:26,630   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T00:41:26,631   ./base/sbml/xml/XMLError.cpp:403:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:26,631     403 |   if (&details == NULL)
2025-09-08T00:41:26,631         |   ^~
2025-09-08T00:41:26,631   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:26,631     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T00:41:26,631         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:41:26,631   ./base/sbml/xml/XMLError.cpp:382:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:26,631     382 |     if ( &details != NULL && !details.empty() )
2025-09-08T00:41:26,632         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T00:41:29,653   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T00:41:29,654      96 | struct Delete : public unary_function<XMLError*, void>
2025-09-08T00:41:29,654         |                        ^~~~~~~~~~~~~~
2025-09-08T00:41:29,654   In file included from /usr/include/c++/14/functional:49,
2025-09-08T00:41:29,654                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2025-09-08T00:41:29,654   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T00:41:29,654     117 |     struct unary_function
2025-09-08T00:41:29,654         |            ^~~~~~~~~~~~~~
2025-09-08T00:41:29,656   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2025-09-08T00:41:29,657   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2025-09-08T00:41:29,657     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T00:41:29,657         |              ^
2025-09-08T00:41:29,657   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2025-09-08T00:41:29,657     118 | XMLErrorLog::add (const XMLError& error)
2025-09-08T00:41:29,657         |                   ~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:29,902   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:29,902     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T00:41:29,902         |   ^~
2025-09-08T00:41:31,861   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T00:41:31,861   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T00:41:31,862      57 |   if (&filename == NULL) return;
2025-09-08T00:41:31,862         |                 ^
2025-09-08T00:41:31,862   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2025-09-08T00:41:31,862      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2025-09-08T00:41:31,862         |                               ~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T00:41:32,014   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T00:41:32,014   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:32,014      57 |   if (&filename == NULL) return;
2025-09-08T00:41:32,014         |   ^~
2025-09-08T00:41:39,987   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T00:41:39,987   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:41:39,987      76 |   if (&orig == NULL)
2025-09-08T00:41:39,987         |             ^
2025-09-08T00:41:39,988   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2025-09-08T00:41:39,988      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2025-09-08T00:41:39,988         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:39,991   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T00:41:39,991   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:41:39,991      93 |   if (&rhs == NULL)
2025-09-08T00:41:39,992         |            ^
2025-09-08T00:41:39,992   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2025-09-08T00:41:39,992      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2025-09-08T00:41:39,992         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:39,993   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T00:41:39,993   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:41:39,994     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:39,994         |            ^
2025-09-08T00:41:39,994   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2025-09-08T00:41:39,994     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T00:41:39,994         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:39,994   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:41:39,994     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:39,994         |                               ^
2025-09-08T00:41:39,994   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2025-09-08T00:41:39,995     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T00:41:39,995         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:40,011   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T00:41:40,011   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:41:40,012     322 |   if (&prefix == NULL) return std::string();
2025-09-08T00:41:40,012         |               ^
2025-09-08T00:41:40,012   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2025-09-08T00:41:40,012     320 | XMLNamespaces::getURI (const std::string& prefix) const
2025-09-08T00:41:40,012         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:40,013   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T00:41:40,013   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:41:40,014     348 |   if (&uri == NULL) return false;
2025-09-08T00:41:40,014         |            ^
2025-09-08T00:41:40,014   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2025-09-08T00:41:40,014     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2025-09-08T00:41:40,014         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:40,014   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T00:41:40,014   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:41:40,015     359 |   if (&prefix == NULL) return false;
2025-09-08T00:41:40,015         |               ^
2025-09-08T00:41:40,015   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2025-09-08T00:41:40,015     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2025-09-08T00:41:40,015         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:40,015   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T00:41:40,015   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:41:40,016     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T00:41:40,016         |            ^
2025-09-08T00:41:40,016   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2025-09-08T00:41:40,016     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T00:41:40,016         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:40,016   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:41:40,016     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T00:41:40,017         |                               ^
2025-09-08T00:41:40,017   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2025-09-08T00:41:40,017     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T00:41:40,017         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:40,408   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T00:41:40,408   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:40,408     322 |   if (&prefix == NULL) return std::string();
2025-09-08T00:41:40,408         |   ^~
2025-09-08T00:41:40,409   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T00:41:40,409   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:40,409     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T00:41:40,409         |            ^
2025-09-08T00:41:40,409   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:40,409     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T00:41:40,409         |                               ^
2025-09-08T00:41:40,410   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T00:41:40,410   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:40,410     348 |   if (&uri == NULL) return false;
2025-09-08T00:41:40,410         |   ^~
2025-09-08T00:41:40,411   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T00:41:40,411   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:40,411     359 |   if (&prefix == NULL) return false;
2025-09-08T00:41:40,411         |   ^~
2025-09-08T00:41:40,417   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T00:41:40,417   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:40,417      76 |   if (&orig == NULL)
2025-09-08T00:41:40,417         |   ^~
2025-09-08T00:41:40,417   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T00:41:40,417   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:40,417      93 |   if (&rhs == NULL)
2025-09-08T00:41:40,417         |   ^~
2025-09-08T00:41:40,419   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T00:41:40,420   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:40,420     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:40,420         |            ^
2025-09-08T00:41:40,420   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:40,420     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:40,420         |                               ^
2025-09-08T00:41:44,802   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T00:41:44,803   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:41:44,803     197 |   if (&rhs == NULL)
2025-09-08T00:41:44,803         |            ^
2025-09-08T00:41:44,803   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2025-09-08T00:41:44,803     195 | XMLNode::operator=(const XMLNode& rhs)
2025-09-08T00:41:44,803         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:44,805   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T00:41:44,806   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:41:44,806     230 |   if (&(node) == NULL)
2025-09-08T00:41:44,806         |               ^
2025-09-08T00:41:44,806   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2025-09-08T00:41:44,806     226 | XMLNode::addChild (const XMLNode& node)
2025-09-08T00:41:44,806         |                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:44,807   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T00:41:44,807   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T00:41:44,808     267 |   if (&(node) == NULL)
2025-09-08T00:41:44,808         |               ^
2025-09-08T00:41:44,808   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2025-09-08T00:41:44,808     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2025-09-08T00:41:44,808         |                                       ~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:44,814   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T00:41:44,814   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:44,814     413 |   if (&name == NULL) return -1;
2025-09-08T00:41:44,814         |             ^
2025-09-08T00:41:44,814   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2025-09-08T00:41:44,814     411 | XMLNode::getIndex (const std::string& name) const
2025-09-08T00:41:44,815         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:44,816   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T00:41:44,816   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2025-09-08T00:41:44,816     435 |   if (&other == NULL) return false;
2025-09-08T00:41:44,816         |              ^
2025-09-08T00:41:44,817   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2025-09-08T00:41:44,817     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2025-09-08T00:41:44,817         |                 ~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:44,823   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T00:41:44,823   ./base/sbml/xml/XMLNode.cpp:507:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:41:44,823     507 |   if (&stream == NULL) return;
2025-09-08T00:41:44,824         |               ^
2025-09-08T00:41:44,824   ./base/sbml/xml/XMLNode.cpp:505:34: note: ‘stream’ declared here
2025-09-08T00:41:44,824     505 | XMLNode::write (XMLOutputStream& stream) const
2025-09-08T00:41:44,824         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:44,828   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T00:41:44,828   ./base/sbml/xml/XMLNode.cpp:577:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2025-09-08T00:41:44,828     577 |   if (&xmlstr == NULL) return NULL;
2025-09-08T00:41:44,828         |               ^
2025-09-08T00:41:44,828   ./base/sbml/xml/XMLNode.cpp:575:61: note: ‘xmlstr’ declared here
2025-09-08T00:41:44,828     575 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2025-09-08T00:41:44,829         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:45,298   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T00:41:45,298   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:45,298     413 |   if (&name == NULL) return -1;
2025-09-08T00:41:45,298         |   ^~
2025-09-08T00:41:45,299   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T00:41:45,299   ./base/sbml/xml/XMLNode.cpp:507:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:45,299     507 |   if (&stream == NULL) return;
2025-09-08T00:41:45,299         |   ^~
2025-09-08T00:41:45,317   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T00:41:45,317   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:45,318     197 |   if (&rhs == NULL)
2025-09-08T00:41:45,318         |   ^~
2025-09-08T00:41:45,320   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T00:41:45,320   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:45,320     230 |   if (&(node) == NULL)
2025-09-08T00:41:45,320         |   ^~
2025-09-08T00:41:45,322   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T00:41:45,322   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:45,322     267 |   if (&(node) == NULL)
2025-09-08T00:41:45,322         |   ^~
2025-09-08T00:41:45,325   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T00:41:45,326   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:45,326     435 |   if (&other == NULL) return false;
2025-09-08T00:41:45,326         |   ^~
2025-09-08T00:41:45,328   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T00:41:45,328   ./base/sbml/xml/XMLNode.cpp:577:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:45,328     577 |   if (&xmlstr == NULL) return NULL;
2025-09-08T00:41:45,328         |   ^~
2025-09-08T00:41:51,640   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T00:41:51,641   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T00:41:51,641     220 |   if (&stream == NULL)
2025-09-08T00:41:51,641         |               ^
2025-09-08T00:41:51,641   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2025-09-08T00:41:51,641     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2025-09-08T00:41:51,641         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:51,643   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T00:41:51,643   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:51,643     236 |   if(&name == NULL) return;
2025-09-08T00:41:51,643         |            ^
2025-09-08T00:41:51,643   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2025-09-08T00:41:51,643     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2025-09-08T00:41:51,643         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:51,646   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T00:41:51,646   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:51,646     270 |   if(&triple == NULL) return;
2025-09-08T00:41:51,646         |              ^
2025-09-08T00:41:51,647   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2025-09-08T00:41:51,647     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2025-09-08T00:41:51,647         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:51,649   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T00:41:51,649   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:51,649     313 |   if (&name == NULL) return;
2025-09-08T00:41:51,649         |             ^
2025-09-08T00:41:51,650   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2025-09-08T00:41:51,650     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2025-09-08T00:41:51,650         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:51,650   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T00:41:51,651   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:51,651     344 |   if (&triple == NULL) return;
2025-09-08T00:41:51,651         |               ^
2025-09-08T00:41:51,651   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2025-09-08T00:41:51,651     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2025-09-08T00:41:51,651         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:51,652   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T00:41:51,652   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:51,652     374 |   if (&name == NULL) return;
2025-09-08T00:41:51,652         |             ^
2025-09-08T00:41:51,653   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2025-09-08T00:41:51,653     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2025-09-08T00:41:51,653         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:51,654   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T00:41:51,654   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:51,654     409 |   if (&triple == NULL) return;
2025-09-08T00:41:51,654         |               ^
2025-09-08T00:41:51,654   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2025-09-08T00:41:51,655     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2025-09-08T00:41:51,655         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:51,656   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T00:41:51,656   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:51,656     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T00:41:51,656         |              ^
2025-09-08T00:41:51,656   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2025-09-08T00:41:51,657     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T00:41:51,657         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:51,657   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:51,657     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T00:41:51,657         |                                ^
2025-09-08T00:41:51,657   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2025-09-08T00:41:51,657     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T00:41:51,657         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:51,661   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T00:41:51,662   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:51,662     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,662         |             ^
2025-09-08T00:41:51,662   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2025-09-08T00:41:51,662     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T00:41:51,662         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:51,662   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:51,662     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,663         |                               ^
2025-09-08T00:41:51,663   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2025-09-08T00:41:51,663     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T00:41:51,663         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T00:41:51,672   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T00:41:51,672   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:51,672     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:51,672         |               ^
2025-09-08T00:41:51,672   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2025-09-08T00:41:51,672     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T00:41:51,672         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:51,673   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:51,673     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:51,673         |                                 ^
2025-09-08T00:41:51,673   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2025-09-08T00:41:51,673     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T00:41:51,673         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T00:41:51,673   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T00:41:51,673   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:51,673     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,673         |             ^
2025-09-08T00:41:51,673   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2025-09-08T00:41:51,674     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T00:41:51,674         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:51,674   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:51,674     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,674         |                               ^
2025-09-08T00:41:51,674   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2025-09-08T00:41:51,674     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T00:41:51,674         |                                                           ~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:51,674   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T00:41:51,674   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:51,674     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,674         |             ^
2025-09-08T00:41:51,675   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2025-09-08T00:41:51,675     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T00:41:51,675         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:51,675   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:51,675     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,675         |                               ^
2025-09-08T00:41:51,675   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2025-09-08T00:41:51,675     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T00:41:51,675         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T00:41:51,675   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T00:41:51,675   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:51,675     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,676         |             ^
2025-09-08T00:41:51,676   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2025-09-08T00:41:51,676     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T00:41:51,676         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:51,676   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:51,676     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,676         |                               ^
2025-09-08T00:41:51,676   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2025-09-08T00:41:51,676     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T00:41:51,676         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T00:41:51,676   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T00:41:51,676   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:51,677     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:51,677         |               ^
2025-09-08T00:41:51,677   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2025-09-08T00:41:51,677     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T00:41:51,677         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:51,677   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:51,677     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:51,677         |                                 ^
2025-09-08T00:41:51,677   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2025-09-08T00:41:51,677     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T00:41:51,677         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T00:41:51,682   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T00:41:51,682   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:41:51,682     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,682         |             ^
2025-09-08T00:41:51,682   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2025-09-08T00:41:51,682     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T00:41:51,683         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:51,683   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:51,683     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:51,683         |                               ^
2025-09-08T00:41:51,683   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2025-09-08T00:41:51,683     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T00:41:51,683         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:51,683   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T00:41:51,683   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:51,683     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:51,684         |               ^
2025-09-08T00:41:51,684   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2025-09-08T00:41:51,684     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2025-09-08T00:41:51,684         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:51,684   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T00:41:51,684     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:51,684         |                                 ^
2025-09-08T00:41:51,684   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2025-09-08T00:41:51,684     734 |                                  , const unsigned int&  value )
2025-09-08T00:41:51,684         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:52,072   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T00:41:52,072   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,072     236 |   if(&name == NULL) return;
2025-09-08T00:41:52,072         |   ^~
2025-09-08T00:41:52,082   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T00:41:52,082   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,082     313 |   if (&name == NULL) return;
2025-09-08T00:41:52,082         |   ^~
2025-09-08T00:41:52,082   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T00:41:52,082   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,082     374 |   if (&name == NULL) return;
2025-09-08T00:41:52,083         |   ^~
2025-09-08T00:41:52,083   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T00:41:52,083   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,083     270 |   if(&triple == NULL) return;
2025-09-08T00:41:52,083         |   ^~
2025-09-08T00:41:52,083   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T00:41:52,083   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,083     344 |   if (&triple == NULL) return;
2025-09-08T00:41:52,083         |   ^~
2025-09-08T00:41:52,083   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T00:41:52,084   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,084     409 |   if (&triple == NULL) return;
2025-09-08T00:41:52,084         |   ^~
2025-09-08T00:41:52,084   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T00:41:52,084   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,084     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:52,084         |               ^
2025-09-08T00:41:52,084   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,084     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:52,084         |                                 ^
2025-09-08T00:41:52,084   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T00:41:52,085   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,085     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:52,085         |               ^
2025-09-08T00:41:52,085   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,085     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:52,085         |                                 ^
2025-09-08T00:41:52,085   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T00:41:52,085   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,085     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:52,085         |               ^
2025-09-08T00:41:52,085   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,086     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T00:41:52,086         |                                 ^
2025-09-08T00:41:52,086   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T00:41:52,086   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,086     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T00:41:52,086         |              ^
2025-09-08T00:41:52,086   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,086     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T00:41:52,086         |                                ^
2025-09-08T00:41:52,086   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T00:41:52,087   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,087     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,087         |             ^
2025-09-08T00:41:52,087   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,087     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,087         |                               ^
2025-09-08T00:41:52,087   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T00:41:52,087   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,087     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,087         |             ^
2025-09-08T00:41:52,088   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,088     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,088         |                               ^
2025-09-08T00:41:52,088   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T00:41:52,088   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,088     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,088         |             ^
2025-09-08T00:41:52,088   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,088     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,088         |                               ^
2025-09-08T00:41:52,089   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T00:41:52,089   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,089     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,089         |             ^
2025-09-08T00:41:52,089   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,089     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,089         |                               ^
2025-09-08T00:41:52,089   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T00:41:52,090   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,090     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,090         |             ^
2025-09-08T00:41:52,090   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,090     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T00:41:52,090         |                               ^
2025-09-08T00:41:52,090   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T00:41:52,090   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:52,090     220 |   if (&stream == NULL)
2025-09-08T00:41:52,090         |   ^~
2025-09-08T00:41:58,427   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T00:41:58,428   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2025-09-08T00:41:58,428     132 |   if (&chars == NULL)
2025-09-08T00:41:58,428         |              ^
2025-09-08T00:41:58,428   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2025-09-08T00:41:58,428     123 | XMLToken::XMLToken (  const std::string&  chars
2025-09-08T00:41:58,428         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T00:41:58,430   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T00:41:58,430   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:41:58,430     156 |   if (&orig == NULL)
2025-09-08T00:41:58,430         |             ^
2025-09-08T00:41:58,431   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2025-09-08T00:41:58,431     154 | XMLToken::XMLToken(const XMLToken& orig)
2025-09-08T00:41:58,431         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:41:58,433   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T00:41:58,433   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:41:58,433     195 |   if (&rhs == NULL)
2025-09-08T00:41:58,434         |            ^
2025-09-08T00:41:58,434   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2025-09-08T00:41:58,434     193 | XMLToken::operator=(const XMLToken& rhs)
2025-09-08T00:41:58,434         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:58,436   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T00:41:58,437   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T00:41:58,437     312 |         if(&attributes == NULL)
2025-09-08T00:41:58,437         |                        ^
2025-09-08T00:41:58,437   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2025-09-08T00:41:58,437     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2025-09-08T00:41:58,437         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:41:58,441   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T00:41:58,442   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2025-09-08T00:41:58,442     783 |         if(&namespaces == NULL)
2025-09-08T00:41:58,442         |                        ^
2025-09-08T00:41:58,442   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2025-09-08T00:41:58,442     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2025-09-08T00:41:58,442         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T00:41:58,442   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T00:41:58,442   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:41:58,443     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:58,443         |            ^
2025-09-08T00:41:58,443   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2025-09-08T00:41:58,443     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T00:41:58,443         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:41:58,443   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:41:58,443     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:58,443         |                               ^
2025-09-08T00:41:58,443   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2025-09-08T00:41:58,443     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T00:41:58,444         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:58,446   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T00:41:58,446   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T00:41:58,446    1058 |         if(&triple == NULL)
2025-09-08T00:41:58,446         |                    ^
2025-09-08T00:41:58,446   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2025-09-08T00:41:58,446    1055 | XMLToken::setTriple(const XMLTriple& triple)
2025-09-08T00:41:58,446         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:41:58,676   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T00:41:58,676   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:58,676     312 |         if(&attributes == NULL)
2025-09-08T00:41:58,676         |         ^~
2025-09-08T00:41:58,677   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T00:41:58,677   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:58,678     783 |         if(&namespaces == NULL)
2025-09-08T00:41:58,678         |         ^~
2025-09-08T00:41:58,678   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T00:41:58,678   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:58,678     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:58,678         |            ^
2025-09-08T00:41:58,678   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:58,678     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T00:41:58,678         |                               ^
2025-09-08T00:41:58,679   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T00:41:58,679   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:58,679    1058 |         if(&triple == NULL)
2025-09-08T00:41:58,679         |         ^~
2025-09-08T00:41:58,694   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T00:41:58,695   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:58,695     132 |   if (&chars == NULL)
2025-09-08T00:41:58,695         |   ^~
2025-09-08T00:41:58,696   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T00:41:58,696   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:58,696     156 |   if (&orig == NULL)
2025-09-08T00:41:58,696         |   ^~
2025-09-08T00:41:58,697   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T00:41:58,697   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:41:58,697     195 |   if (&rhs == NULL)
2025-09-08T00:41:58,697         |   ^~
2025-09-08T00:42:03,426   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T00:42:03,426   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:42:03,426     188 |   if (&element == NULL) return;
2025-09-08T00:42:03,426         |                ^
2025-09-08T00:42:03,426   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2025-09-08T00:42:03,426     186 | XMLTokenizer::startElement (const XMLToken& element)
2025-09-08T00:42:03,426         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:42:03,426   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T00:42:03,427   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T00:42:03,427     234 |   else if (&element != NULL)
2025-09-08T00:42:03,427         |                     ^
2025-09-08T00:42:03,427   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2025-09-08T00:42:03,427     220 | XMLTokenizer::endElement (const XMLToken& element)
2025-09-08T00:42:03,427         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:42:03,427   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T00:42:03,427   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2025-09-08T00:42:03,427     247 |   if (&data == NULL) return;
2025-09-08T00:42:03,428         |             ^
2025-09-08T00:42:03,428   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2025-09-08T00:42:03,428     245 | XMLTokenizer::characters (const XMLToken& data)
2025-09-08T00:42:03,428         |                           ~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:42:03,698   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T00:42:03,699   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:42:03,699     188 |   if (&element == NULL) return;
2025-09-08T00:42:03,699         |   ^~
2025-09-08T00:42:03,699   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T00:42:03,699   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:42:03,699     234 |   else if (&element != NULL)
2025-09-08T00:42:03,699         |        ^~
2025-09-08T00:42:03,699   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T00:42:03,699   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:42:03,700     247 |   if (&data == NULL) return;
2025-09-08T00:42:03,700         |   ^~
2025-09-08T00:42:06,734   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:42:06,734   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T00:42:06,734      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:42:06,734         |              ^
2025-09-08T00:42:06,734   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2025-09-08T00:42:06,734      58 | XMLTriple::XMLTriple (  const std::string&  name
2025-09-08T00:42:06,735         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:42:06,735   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T00:42:06,735      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:42:06,735         |                                ^
2025-09-08T00:42:06,735   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2025-09-08T00:42:06,735      59 |                       , const std::string&  uri
2025-09-08T00:42:06,735         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:42:06,735   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T00:42:06,735      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:42:06,735         |                                                     ^
2025-09-08T00:42:06,736   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2025-09-08T00:42:06,736      60 |                       , const std::string&  prefix )
2025-09-08T00:42:06,736         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T00:42:06,736   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T00:42:06,736   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2025-09-08T00:42:06,736      81 |   if (&triplet == NULL)
2025-09-08T00:42:06,737         |                ^
2025-09-08T00:42:06,737   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2025-09-08T00:42:06,737      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2025-09-08T00:42:06,737         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T00:42:06,739   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T00:42:06,740   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T00:42:06,740     117 |   if (&orig == NULL)
2025-09-08T00:42:06,740         |             ^
2025-09-08T00:42:06,740   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2025-09-08T00:42:06,740     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2025-09-08T00:42:06,740         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T00:42:06,741   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T00:42:06,741   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T00:42:06,741     136 |   if (&rhs == NULL)
2025-09-08T00:42:06,741         |            ^
2025-09-08T00:42:06,741   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2025-09-08T00:42:06,741     134 | XMLTriple::operator=(const XMLTriple& rhs)
2025-09-08T00:42:06,742         |                      ~~~~~~~~~~~~~~~~~^~~
2025-09-08T00:42:06,902   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T00:42:06,902   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:42:06,902      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:42:06,902         |       ~~~~~~~^~~~~~~~
2025-09-08T00:42:06,902   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:42:06,902      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:42:06,902         |                          ~~~~~~^~~~~~~~
2025-09-08T00:42:06,902   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:42:06,903      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T00:42:06,903         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T00:42:06,903   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T00:42:06,903   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:42:06,903     117 |   if (&orig == NULL)
2025-09-08T00:42:06,903         |   ^~
2025-09-08T00:42:06,903   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T00:42:06,903   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:42:06,903     136 |   if (&rhs == NULL)
2025-09-08T00:42:06,903         |   ^~
2025-09-08T00:42:06,904   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T00:42:06,904   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2025-09-08T00:42:06,904      81 |   if (&triplet == NULL)
2025-09-08T00:42:06,904         |   ^~
2025-09-08T00:42:12,980   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T00:42:12,980   !!

2025-09-08T00:42:12,980           ********************************************************************************
2025-09-08T00:42:12,980           Please avoid running ``setup.py`` directly.
2025-09-08T00:42:12,980           Instead, use pypa/build, pypa/installer or other
2025-09-08T00:42:12,980           standards-based tools.

2025-09-08T00:42:12,981           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T00:42:12,981           or your builds will no longer be supported.

2025-09-08T00:42:12,981           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T00:42:12,981           ********************************************************************************

2025-09-08T00:42:12,981   !!
2025-09-08T00:42:12,981     self.initialize_options()
2025-09-08T00:42:29,902   Building wheel for python-libsbml (setup.py): finished with status 'done'
2025-09-08T00:42:30,227   Created wheel for python-libsbml: filename=python_libsbml-5.10.2-cp313-cp313-linux_armv7l.whl size=32437650 sha256=4116db01590acb483d09a7db34dd504438979b6ecb01749ea563f941a41973c9
2025-09-08T00:42:30,228   Stored in directory: /tmp/pip-ephem-wheel-cache-zvxg9lid/wheels/c1/e7/63/1020bb2e99ad53da5448a44e87589fbf989a138ff780928e66
2025-09-08T00:42:30,235 Successfully built python-libsbml
2025-09-08T00:42:30,302 Removed build tracker: '/tmp/pip-build-tracker-2r0vpebs'