2025-09-08T01:14:36,960 Created temporary directory: /tmp/pip-build-tracker-w8f1dspd 2025-09-08T01:14:36,961 Initialized build tracking at /tmp/pip-build-tracker-w8f1dspd 2025-09-08T01:14:36,961 Created build tracker: /tmp/pip-build-tracker-w8f1dspd 2025-09-08T01:14:36,961 Entered build tracker: /tmp/pip-build-tracker-w8f1dspd 2025-09-08T01:14:36,961 Created temporary directory: /tmp/pip-wheel-xdez8tyr 2025-09-08T01:14:36,965 Created temporary directory: /tmp/pip-ephem-wheel-cache-3gagv4ys 2025-09-08T01:14:37,023 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T01:14:37,025 2 location(s) to search for versions of rnacounter: 2025-09-08T01:14:37,025 * https://pypi.org/simple/rnacounter/ 2025-09-08T01:14:37,025 * https://www.piwheels.org/simple/rnacounter/ 2025-09-08T01:14:37,025 Fetching project page and analyzing links: https://pypi.org/simple/rnacounter/ 2025-09-08T01:14:37,026 Getting page https://pypi.org/simple/rnacounter/ 2025-09-08T01:14:37,027 Found index url https://pypi.org/simple/ 2025-09-08T01:14:37,096 Fetched page https://pypi.org/simple/rnacounter/ as application/vnd.pypi.simple.v1+json 2025-09-08T01:14:37,099 Found link https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.2 2025-09-08T01:14:37,099 Found link https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.3.1 2025-09-08T01:14:37,099 Found link https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.3.2 2025-09-08T01:14:37,099 Found link https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.3.7 2025-09-08T01:14:37,100 Found link https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.1.3.10 2025-09-08T01:14:37,100 Found link https://files.pythonhosted.org/packages/8a/5e/1b112fc6343bf52ace3a9afaa30eabaf4338afadabf1fb97454a7556b835/rnacounter-1.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.2 2025-09-08T01:14:37,100 Found link https://files.pythonhosted.org/packages/05/7d/42ecc29d98f52b77953a55da4836d36d534b317b4d66af971c9008804b61/rnacounter-1.2.1.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.2.1 2025-09-08T01:14:37,100 Found link https://files.pythonhosted.org/packages/dd/92/d53ee16c942fb78a312c03b22b0ddc08eb00ae4627f9125415a2c650b674/rnacounter-1.3.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.3 2025-09-08T01:14:37,100 Found link https://files.pythonhosted.org/packages/49/18/a50e0e2b164272f6d13f458b43d6851766cf121b5672de12078df2bb953a/rnacounter-1.3.1.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.3.1 2025-09-08T01:14:37,101 Found link https://files.pythonhosted.org/packages/ab/bf/54a012d6660528530b8404401bf494bda91947e38aae0d45ba4d721de6d4/rnacounter-1.4.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.4 2025-09-08T01:14:37,101 Found link https://files.pythonhosted.org/packages/84/c0/8f274da33c177f6a7c6d8632d9e99413c83e6ec688825677acace41cfdb1/rnacounter-1.4.1.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.4.1 2025-09-08T01:14:37,101 Found link https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.4.2 2025-09-08T01:14:37,101 Found link https://files.pythonhosted.org/packages/46/ee/29eed438b10276db92163dff3d25bcb91f3f9e99d9a629c35ddb97f27f4d/rnacounter-1.5.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.5 2025-09-08T01:14:37,101 Found link https://files.pythonhosted.org/packages/a2/ea/657e7b7aa7d777173695606509933b52d794b7dbb79501a87bfea2fb511f/rnacounter-1.5.2.tar.gz (from https://pypi.org/simple/rnacounter/), version: 1.5.2 2025-09-08T01:14:37,102 Fetching project page and analyzing links: https://www.piwheels.org/simple/rnacounter/ 2025-09-08T01:14:37,102 Getting page https://www.piwheels.org/simple/rnacounter/ 2025-09-08T01:14:37,103 Found index url https://www.piwheels.org/simple/ 2025-09-08T01:14:37,188 Fetched page https://www.piwheels.org/simple/rnacounter/ as text/html 2025-09-08T01:14:37,199 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5.2-cp35-cp35m-linux_armv7l.whl#sha256=1720939a09d8fbca466729cc4db98be3526fe7a3283ce22ef5c5a21d204a6161 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,199 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5.2-cp35-cp35m-linux_armv6l.whl#sha256=1720939a09d8fbca466729cc4db98be3526fe7a3283ce22ef5c5a21d204a6161 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,199 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5.2-cp34-cp34m-linux_armv7l.whl#sha256=e384cbf3852a44dffbf3a6887901acb36b9b30bd5c7e1a3585b2fe39d868d67a (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,200 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5.2-cp34-cp34m-linux_armv6l.whl#sha256=e384cbf3852a44dffbf3a6887901acb36b9b30bd5c7e1a3585b2fe39d868d67a (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,200 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5-cp35-cp35m-linux_armv7l.whl#sha256=02c416ec8854b92c815224212889f47dbd376e9797f66a0fb19531508b6bc793 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,200 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5-cp35-cp35m-linux_armv6l.whl#sha256=02c416ec8854b92c815224212889f47dbd376e9797f66a0fb19531508b6bc793 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,200 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5-cp34-cp34m-linux_armv7l.whl#sha256=ee88d3438f69ffa3b1868868fce8191565f303aee8dd3ff0f34c3a62886a495c (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,200 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.5-cp34-cp34m-linux_armv6l.whl#sha256=ee88d3438f69ffa3b1868868fce8191565f303aee8dd3ff0f34c3a62886a495c (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,200 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.2-cp34-cp34m-linux_armv7l.whl#sha256=078f497ded7b5492884f2136fa32e9948422bd185ba0345389b2b0d9fa7ab06e (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,200 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.2-cp34-cp34m-linux_armv6l.whl#sha256=078f497ded7b5492884f2136fa32e9948422bd185ba0345389b2b0d9fa7ab06e (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,201 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.2-cp35-cp35m-linux_armv6l.whl#sha256=8dffc574db1608136d619621a8809fb0e4d5d3f830e30f94cc2567f4b0a72c55 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,201 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.2-cp35-cp35m-linux_armv7l.whl#sha256=8dffc574db1608136d619621a8809fb0e4d5d3f830e30f94cc2567f4b0a72c55 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,201 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.1-cp35-cp35m-linux_armv7l.whl#sha256=35acff814eef7a87f368a8ed7c27f0be20add0cd4a9b4aa8ca756d84f216f218 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,201 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.1-cp35-cp35m-linux_armv6l.whl#sha256=35acff814eef7a87f368a8ed7c27f0be20add0cd4a9b4aa8ca756d84f216f218 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,201 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.1-cp34-cp34m-linux_armv7l.whl#sha256=627ec3e6dccdbc30b6697dd277204e300f58ecc971782b1231b09d84a4c1ef94 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,201 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4.1-cp34-cp34m-linux_armv6l.whl#sha256=627ec3e6dccdbc30b6697dd277204e300f58ecc971782b1231b09d84a4c1ef94 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,202 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4-cp34-cp34m-linux_armv7l.whl#sha256=9213623d552d14ff1971589aae10e5f886bcfb42045418cc5871a76607eb25b7 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,202 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4-cp34-cp34m-linux_armv6l.whl#sha256=9213623d552d14ff1971589aae10e5f886bcfb42045418cc5871a76607eb25b7 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,202 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4-cp35-cp35m-linux_armv6l.whl#sha256=14bd0bb3f4379d3d334abacfbbbf7ed43ad60736fa69f394c1eda0385dac9193 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,202 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.4-cp35-cp35m-linux_armv7l.whl#sha256=14bd0bb3f4379d3d334abacfbbbf7ed43ad60736fa69f394c1eda0385dac9193 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,202 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.3.1-cp35-cp35m-linux_armv6l.whl#sha256=a5e2657cda5fa5a9283a186329fadd8db71987a54d71f713970a85b732030278 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,202 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.3.1-cp35-cp35m-linux_armv7l.whl#sha256=a5e2657cda5fa5a9283a186329fadd8db71987a54d71f713970a85b732030278 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,202 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.3-cp35-cp35m-linux_armv6l.whl#sha256=b0a053ced5ce83115199785a117fc7820b20daffef5c19acafc83d0425aca0e1 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,203 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.3-cp35-cp35m-linux_armv7l.whl#sha256=b0a053ced5ce83115199785a117fc7820b20daffef5c19acafc83d0425aca0e1 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,203 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.3-cp34-cp34m-linux_armv7l.whl#sha256=7d3a7695b9d615f45d66d1d00f595ec7b65bbc53dc4ef98292fe909a75adf063 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,203 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.3-cp34-cp34m-linux_armv6l.whl#sha256=7d3a7695b9d615f45d66d1d00f595ec7b65bbc53dc4ef98292fe909a75adf063 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,203 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=b963649459fb2ab742b717d9b68c590d8ce6333d770e20648104b1e30b3ea97c (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,203 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=b963649459fb2ab742b717d9b68c590d8ce6333d770e20648104b1e30b3ea97c (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,203 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=2179418dc1805676ef1838a927c0bbcc2a131b63bd87636aecec3fa865b161d9 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,203 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=2179418dc1805676ef1838a927c0bbcc2a131b63bd87636aecec3fa865b161d9 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,204 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.2-cp34-cp34m-linux_armv7l.whl#sha256=8ed62342f5d7481f7393010ff34b0286db7f26ea914710a1f81e583b478bb68a (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,204 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.2-cp34-cp34m-linux_armv6l.whl#sha256=8ed62342f5d7481f7393010ff34b0286db7f26ea914710a1f81e583b478bb68a (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,204 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.2-cp35-cp35m-linux_armv7l.whl#sha256=6271c54eb4c54d72f9499294fc50f1644dbd248414d993f053106a876d2e9400 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,204 Skipping link: No binaries permitted for rnacounter: 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https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.7-cp35-cp35m-linux_armv6l.whl#sha256=8863095125d87f061f7651061bc503fbb2c1c613417b578294b555b7bcbdeeba (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,205 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.7-cp34-cp34m-linux_armv7l.whl#sha256=368b4bcbb3bbab49c3600537626272135f936e694d4d17911afd7d83cdb31ee6 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,205 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.7-cp34-cp34m-linux_armv6l.whl#sha256=368b4bcbb3bbab49c3600537626272135f936e694d4d17911afd7d83cdb31ee6 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,205 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.2-cp34-cp34m-linux_armv7l.whl#sha256=fb039ca19afdc360ee5843812cf53fbca3ac952fe26a759e4c3700f3b460fc48 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,205 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.2-cp34-cp34m-linux_armv6l.whl#sha256=fb039ca19afdc360ee5843812cf53fbca3ac952fe26a759e4c3700f3b460fc48 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,206 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.2-cp35-cp35m-linux_armv7l.whl#sha256=51ed8c80ea67e82dc8bdaf5636d930011f8ce97bd9cc30432eedabb4dc8c9c95 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,206 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.2-cp35-cp35m-linux_armv6l.whl#sha256=51ed8c80ea67e82dc8bdaf5636d930011f8ce97bd9cc30432eedabb4dc8c9c95 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,206 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.1-cp35-cp35m-linux_armv7l.whl#sha256=534e0f91ccc8a7b74d0e8966764195b4b7e008408e132f2714d3790552ffae89 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,206 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.1-cp35-cp35m-linux_armv6l.whl#sha256=534e0f91ccc8a7b74d0e8966764195b4b7e008408e132f2714d3790552ffae89 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,206 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.1-cp34-cp34m-linux_armv7l.whl#sha256=699103109ceb69845e93941543cff532f3d26934d4a5ceb71af07f8f0c972407 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,206 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.3.1-cp34-cp34m-linux_armv6l.whl#sha256=699103109ceb69845e93941543cff532f3d26934d4a5ceb71af07f8f0c972407 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,206 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.2-cp34-cp34m-linux_armv7l.whl#sha256=e9936c67b8b3ee724e15ef197fef27eb2f5516ba9e9681ca399c5914b4fa01d9 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,207 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.2-cp34-cp34m-linux_armv6l.whl#sha256=e9936c67b8b3ee724e15ef197fef27eb2f5516ba9e9681ca399c5914b4fa01d9 (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,207 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.2-cp35-cp35m-linux_armv6l.whl#sha256=edb76e1344212be1373b20323904b92e0429f1b336a75b9b74a852152217fbab (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,207 Skipping link: No binaries permitted for rnacounter: https://archive1.piwheels.org/simple/rnacounter/rnacounter-1.1.2-cp35-cp35m-linux_armv7l.whl#sha256=edb76e1344212be1373b20323904b92e0429f1b336a75b9b74a852152217fbab (from https://www.piwheels.org/simple/rnacounter/) 2025-09-08T01:14:37,207 Skipping link: not a file: https://www.piwheels.org/simple/rnacounter/ 2025-09-08T01:14:37,207 Skipping link: not a file: https://pypi.org/simple/rnacounter/ 2025-09-08T01:14:37,232 Given no hashes to check 1 links for project 'rnacounter': discarding no candidates 2025-09-08T01:14:37,233 Collecting rnacounter==1.4.2 2025-09-08T01:14:37,234 Created temporary directory: /tmp/pip-unpack-0yh6hpx_ 2025-09-08T01:14:37,700 Downloading rnacounter-1.4.2.tar.gz (297 kB) 2025-09-08T01:14:37,788 Added rnacounter==1.4.2 from https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-w8f1dspd' 2025-09-08T01:14:37,789 Running setup.py (path:/tmp/pip-wheel-xdez8tyr/rnacounter_31c5746190f84e28837c51f72b5a99d4/setup.py) egg_info for package rnacounter 2025-09-08T01:14:37,789 Created temporary directory: /tmp/pip-pip-egg-info-po1hmc04 2025-09-08T01:14:37,789 Preparing metadata (setup.py): started 2025-09-08T01:14:37,790 Running command python setup.py egg_info 2025-09-08T01:14:38,691 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T01:14:38,691 warnings.warn(msg) 2025-09-08T01:14:39,152 running egg_info 2025-09-08T01:14:39,226 creating /tmp/pip-pip-egg-info-po1hmc04/rnacounter.egg-info 2025-09-08T01:14:39,226 writing /tmp/pip-pip-egg-info-po1hmc04/rnacounter.egg-info/PKG-INFO 2025-09-08T01:14:39,227 writing dependency_links to /tmp/pip-pip-egg-info-po1hmc04/rnacounter.egg-info/dependency_links.txt 2025-09-08T01:14:39,228 writing requirements to /tmp/pip-pip-egg-info-po1hmc04/rnacounter.egg-info/requires.txt 2025-09-08T01:14:39,228 writing top-level names to /tmp/pip-pip-egg-info-po1hmc04/rnacounter.egg-info/top_level.txt 2025-09-08T01:14:39,229 writing manifest file '/tmp/pip-pip-egg-info-po1hmc04/rnacounter.egg-info/SOURCES.txt' 2025-09-08T01:14:39,604 reading manifest file '/tmp/pip-pip-egg-info-po1hmc04/rnacounter.egg-info/SOURCES.txt' 2025-09-08T01:14:39,605 reading manifest template 'MANIFEST.in' 2025-09-08T01:14:39,609 writing manifest file '/tmp/pip-pip-egg-info-po1hmc04/rnacounter.egg-info/SOURCES.txt' 2025-09-08T01:14:39,746 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T01:14:39,751 Source in /tmp/pip-wheel-xdez8tyr/rnacounter_31c5746190f84e28837c51f72b5a99d4 has version 1.4.2, which satisfies requirement rnacounter==1.4.2 from https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz 2025-09-08T01:14:39,752 Removed rnacounter==1.4.2 from https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-w8f1dspd' 2025-09-08T01:14:39,756 Created temporary directory: /tmp/pip-unpack-s_jow7sf 2025-09-08T01:14:39,756 Created temporary directory: /tmp/pip-unpack-7dydpvid 2025-09-08T01:14:39,757 Building wheels for collected packages: rnacounter 2025-09-08T01:14:39,758 Created temporary directory: /tmp/pip-wheel-f4p0p2td 2025-09-08T01:14:39,758 DEPRECATION: Building 'rnacounter' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'rnacounter'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T01:14:39,759 Building wheel for rnacounter (setup.py): started 2025-09-08T01:14:39,760 Destination directory: /tmp/pip-wheel-f4p0p2td 2025-09-08T01:14:39,760 Running command python setup.py bdist_wheel 2025-09-08T01:14:40,644 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T01:14:40,645 warnings.warn(msg) 2025-09-08T01:14:41,027 running bdist_wheel 2025-09-08T01:14:41,392 running build 2025-09-08T01:14:41,393 running build_py 2025-09-08T01:14:41,473 creating build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T01:14:41,473 copying rnacounter/setup.py -> build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T01:14:41,474 copying rnacounter/main.py -> build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T01:14:41,474 copying rnacounter/draft_nocython.py -> build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T01:14:41,475 copying rnacounter/__init__.py -> build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T01:14:41,476 creating build/lib.linux-armv7l-cpython-313/testfiles 2025-09-08T01:14:41,476 copying testfiles/__init__.py -> build/lib.linux-armv7l-cpython-313/testfiles 2025-09-08T01:14:41,476 running egg_info 2025-09-08T01:14:41,550 writing rnacounter.egg-info/PKG-INFO 2025-09-08T01:14:41,551 writing dependency_links to rnacounter.egg-info/dependency_links.txt 2025-09-08T01:14:41,552 writing requirements to rnacounter.egg-info/requires.txt 2025-09-08T01:14:41,552 writing top-level names to rnacounter.egg-info/top_level.txt 2025-09-08T01:14:41,628 reading manifest file 'rnacounter.egg-info/SOURCES.txt' 2025-09-08T01:14:41,630 reading manifest template 'MANIFEST.in' 2025-09-08T01:14:41,634 writing manifest file 'rnacounter.egg-info/SOURCES.txt' 2025-09-08T01:14:41,636 copying rnacounter/rnacounter.c -> build/lib.linux-armv7l-cpython-313/rnacounter 2025-09-08T01:14:41,642 copying testfiles/gapdhKO.bam -> build/lib.linux-armv7l-cpython-313/testfiles 2025-09-08T01:14:41,643 copying testfiles/gapdhKO.bam.bai -> build/lib.linux-armv7l-cpython-313/testfiles 2025-09-08T01:14:41,644 copying testfiles/mm9_3genes_renamed.gtf -> build/lib.linux-armv7l-cpython-313/testfiles 2025-09-08T01:14:41,645 running build_ext 2025-09-08T01:14:41,966 building 'rnacounter/rnacounter' extension 2025-09-08T01:14:41,966 creating build/temp.linux-armv7l-cpython-313/rnacounter 2025-09-08T01:14:41,967 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c rnacounter/rnacounter.c -o build/temp.linux-armv7l-cpython-313/rnacounter/rnacounter.o 2025-09-08T01:14:42,391 rnacounter/rnacounter.c: In function ‘__Pyx_ListComp_Append’: 2025-09-08T01:14:42,391 rnacounter/rnacounter.c:1362:23: error: lvalue required as left operand of assignment 2025-09-08T01:14:42,391 1362 | Py_SIZE(list) = len+1; 2025-09-08T01:14:42,391 | ^ 2025-09-08T01:14:42,392 rnacounter/rnacounter.c: In function ‘__Pyx_PyList_Append’: 2025-09-08T01:14:42,392 rnacounter/rnacounter.c:1410:23: error: lvalue required as left operand of assignment 2025-09-08T01:14:42,392 1410 | Py_SIZE(list) = len+1; 2025-09-08T01:14:42,392 | ^ 2025-09-08T01:14:43,680 rnacounter/rnacounter.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-08T01:14:43,717 rnacounter/rnacounter.c:22334:52: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-08T01:14:43,717 22334 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); 2025-09-08T01:14:43,717 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:43,717 | PyBUF_C_CONTIGUOUS 2025-09-08T01:14:43,720 rnacounter/rnacounter.c:22334:52: note: each undeclared identifier is reported only once for each function it appears in 2025-09-08T01:14:43,778 rnacounter/rnacounter.c:22374:52: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-08T01:14:43,779 22374 | __pyx_t_1 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); 2025-09-08T01:14:43,779 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:43,779 | PyBUF_F_CONTIGUOUS 2025-09-08T01:14:43,786 rnacounter/rnacounter.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-08T01:14:43,813 rnacounter/rnacounter.c:23331:42: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T01:14:43,813 23331 | if (unlikely(((PyObject *)__pyx_v_descr->names) == Py_None)) { 2025-09-08T01:14:43,813 | ^~ 2025-09-08T01:14:43,814 rnacounter/rnacounter.c:466:45: note: in definition of macro ‘unlikely’ 2025-09-08T01:14:43,814 466 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T01:14:43,814 | ^ 2025-09-08T01:14:43,844 rnacounter/rnacounter.c:23335:41: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T01:14:43,844 23335 | __pyx_t_1 = ((PyObject *)__pyx_v_descr->names); __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0; 2025-09-08T01:14:43,844 | ^~ 2025-09-08T01:14:43,877 rnacounter/rnacounter.c:23354:47: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T01:14:43,877 23354 | __pyx_t_3 = PyObject_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (!__pyx_t_3) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 795; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:43,878 | ^~ 2025-09-08T01:14:43,939 rnacounter/rnacounter.c:23566:81: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-08T01:14:43,939 23566 | (__pyx_v_offset[__pyx_t_11]) = ((__pyx_v_offset[__pyx_t_11]) + __pyx_v_child->elsize); 2025-09-08T01:14:43,939 | ^~ 2025-09-08T01:14:44,058 rnacounter/rnacounter.c: In function ‘__Pyx_InitCachedConstants’: 2025-09-08T01:14:44,090 rnacounter/rnacounter.c:27891:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:44,090 27891 | __pyx_k_codeobj_114 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_113, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_gtf, 68, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_114)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 68; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,090 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,090 In file included from /usr/include/python3.13/Python.h:101, 2025-09-08T01:14:44,090 from rnacounter/rnacounter.c:16: 2025-09-08T01:14:44,091 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,091 213 | PyCode_New( 2025-09-08T01:14:44,091 | ^~~~~~~~~~ 2025-09-08T01:14:44,126 rnacounter/rnacounter.c:27891:220: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:44,126 27891 | __pyx_k_codeobj_114 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_113, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_gtf, 68, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_114)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 68; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,126 | ^~ 2025-09-08T01:14:44,126 | | 2025-09-08T01:14:44,126 | int 2025-09-08T01:14:44,127 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,127 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,127 | ^~~~~ 2025-09-08T01:14:44,127 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:44,127 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,127 | ~~~~~~~~~~^ 2025-09-08T01:14:44,162 rnacounter/rnacounter.c:27891:224: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:44,162 27891 | __pyx_k_codeobj_114 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_113, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_gtf, 68, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_114)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 68; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,162 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,162 | | 2025-09-08T01:14:44,162 | PyObject * {aka struct _object *} 2025-09-08T01:14:44,162 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,162 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,162 | ^~~~ 2025-09-08T01:14:44,162 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:44,163 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,163 | ~~~~^ 2025-09-08T01:14:44,197 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:44,197 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,197 | ^~~~~~~~~~ 2025-09-08T01:14:44,197 rnacounter/rnacounter.c:27891:36: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,198 27891 | __pyx_k_codeobj_114 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_113, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_gtf, 68, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_114)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 68; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,198 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,198 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,198 213 | PyCode_New( 2025-09-08T01:14:44,198 | ^~~~~~~~~~ 2025-09-08T01:14:44,229 rnacounter/rnacounter.c:27903:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:44,230 27903 | __pyx_k_codeobj_117 = (PyObject*)__Pyx_PyCode_New(2, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_116, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_bed, 88, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_117)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 88; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,230 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,230 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,230 213 | PyCode_New( 2025-09-08T01:14:44,230 | ^~~~~~~~~~ 2025-09-08T01:14:44,265 rnacounter/rnacounter.c:27903:221: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:44,265 27903 | __pyx_k_codeobj_117 = (PyObject*)__Pyx_PyCode_New(2, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_116, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_bed, 88, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_117)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 88; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,265 | ^~ 2025-09-08T01:14:44,265 | | 2025-09-08T01:14:44,265 | int 2025-09-08T01:14:44,265 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,266 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,266 | ^~~~~ 2025-09-08T01:14:44,266 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:44,266 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,266 | ~~~~~~~~~~^ 2025-09-08T01:14:44,300 rnacounter/rnacounter.c:27903:225: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:44,301 27903 | __pyx_k_codeobj_117 = (PyObject*)__Pyx_PyCode_New(2, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_116, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_bed, 88, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_117)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 88; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,301 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,301 | | 2025-09-08T01:14:44,301 | PyObject * {aka struct _object *} 2025-09-08T01:14:44,301 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,301 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,301 | ^~~~ 2025-09-08T01:14:44,301 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:44,301 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,302 | ~~~~^ 2025-09-08T01:14:44,336 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:44,336 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,336 | ^~~~~~~~~~ 2025-09-08T01:14:44,336 rnacounter/rnacounter.c:27903:36: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,336 27903 | __pyx_k_codeobj_117 = (PyObject*)__Pyx_PyCode_New(2, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_116, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_bed, 88, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_117)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 88; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,337 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,337 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,337 213 | PyCode_New( 2025-09-08T01:14:44,337 | ^~~~~~~~~~ 2025-09-08T01:14:44,368 rnacounter/rnacounter.c:27915:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:44,368 27915 | __pyx_k_codeobj_119 = (PyObject*)__Pyx_PyCode_New(2, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_118, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__join, 113, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_119)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 113; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,369 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,369 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,369 213 | PyCode_New( 2025-09-08T01:14:44,369 | ^~~~~~~~~~ 2025-09-08T01:14:44,404 rnacounter/rnacounter.c:27915:216: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:44,404 27915 | __pyx_k_codeobj_119 = (PyObject*)__Pyx_PyCode_New(2, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_118, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__join, 113, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_119)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 113; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,404 | ^~~ 2025-09-08T01:14:44,404 | | 2025-09-08T01:14:44,404 | int 2025-09-08T01:14:44,404 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,405 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,405 | ^~~~~ 2025-09-08T01:14:44,405 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:44,405 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,405 | ~~~~~~~~~~^ 2025-09-08T01:14:44,440 rnacounter/rnacounter.c:27915:221: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:44,440 27915 | __pyx_k_codeobj_119 = (PyObject*)__Pyx_PyCode_New(2, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_118, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__join, 113, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_119)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 113; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,440 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,440 | | 2025-09-08T01:14:44,440 | PyObject * {aka struct _object *} 2025-09-08T01:14:44,440 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,440 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,440 | ^~~~ 2025-09-08T01:14:44,441 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:44,441 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,441 | ~~~~^ 2025-09-08T01:14:44,475 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:44,476 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,476 | ^~~~~~~~~~ 2025-09-08T01:14:44,476 rnacounter/rnacounter.c:27915:36: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,476 27915 | __pyx_k_codeobj_119 = (PyObject*)__Pyx_PyCode_New(2, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_118, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__join, 113, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_119)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 113; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,476 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,476 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,476 213 | PyCode_New( 2025-09-08T01:14:44,476 | ^~~~~~~~~~ 2025-09-08T01:14:44,508 rnacounter/rnacounter.c:27927:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:44,508 27927 | __pyx_k_codeobj_121 = (PyObject*)__Pyx_PyCode_New(4, 0, 54, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_120, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__process_chunk, 585, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_121)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 585; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,508 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,509 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,509 213 | PyCode_New( 2025-09-08T01:14:44,509 | ^~~~~~~~~~ 2025-09-08T01:14:44,544 rnacounter/rnacounter.c:27927:225: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:44,544 27927 | __pyx_k_codeobj_121 = (PyObject*)__Pyx_PyCode_New(4, 0, 54, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_120, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__process_chunk, 585, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_121)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 585; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,544 | ^~~ 2025-09-08T01:14:44,544 | | 2025-09-08T01:14:44,544 | int 2025-09-08T01:14:44,544 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,544 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,544 | ^~~~~ 2025-09-08T01:14:44,544 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:44,545 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,545 | ~~~~~~~~~~^ 2025-09-08T01:14:44,579 rnacounter/rnacounter.c:27927:230: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:44,579 27927 | __pyx_k_codeobj_121 = (PyObject*)__Pyx_PyCode_New(4, 0, 54, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_120, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__process_chunk, 585, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_121)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 585; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,580 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,580 | | 2025-09-08T01:14:44,580 | PyObject * {aka struct _object *} 2025-09-08T01:14:44,580 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,580 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,580 | ^~~~ 2025-09-08T01:14:44,580 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:44,580 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,580 | ~~~~^ 2025-09-08T01:14:44,615 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:44,615 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,615 | ^~~~~~~~~~ 2025-09-08T01:14:44,615 rnacounter/rnacounter.c:27927:36: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,615 27927 | __pyx_k_codeobj_121 = (PyObject*)__Pyx_PyCode_New(4, 0, 54, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_120, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__process_chunk, 585, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_121)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 585; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,615 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,616 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,616 213 | PyCode_New( 2025-09-08T01:14:44,616 | ^~~~~~~~~~ 2025-09-08T01:14:44,647 rnacounter/rnacounter.c:27939:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:44,648 27939 | __pyx_k_codeobj_123 = (PyObject*)__Pyx_PyCode_New(7, 0, 14, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_122, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__print_output, 720, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_123)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 720; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,648 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,648 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,648 213 | PyCode_New( 2025-09-08T01:14:44,648 | ^~~~~~~~~~ 2025-09-08T01:14:44,683 rnacounter/rnacounter.c:27939:224: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:44,683 27939 | __pyx_k_codeobj_123 = (PyObject*)__Pyx_PyCode_New(7, 0, 14, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_122, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__print_output, 720, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_123)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 720; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,683 | ^~~ 2025-09-08T01:14:44,683 | | 2025-09-08T01:14:44,683 | int 2025-09-08T01:14:44,683 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,684 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,684 | ^~~~~ 2025-09-08T01:14:44,684 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:44,684 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,684 | ~~~~~~~~~~^ 2025-09-08T01:14:44,719 rnacounter/rnacounter.c:27939:229: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:44,719 27939 | __pyx_k_codeobj_123 = (PyObject*)__Pyx_PyCode_New(7, 0, 14, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_122, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__print_output, 720, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_123)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 720; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,719 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,719 | | 2025-09-08T01:14:44,719 | PyObject * {aka struct _object *} 2025-09-08T01:14:44,719 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,719 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,719 | ^~~~ 2025-09-08T01:14:44,719 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:44,720 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,720 | ~~~~^ 2025-09-08T01:14:44,754 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:44,754 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,755 | ^~~~~~~~~~ 2025-09-08T01:14:44,755 rnacounter/rnacounter.c:27939:36: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,755 27939 | __pyx_k_codeobj_123 = (PyObject*)__Pyx_PyCode_New(7, 0, 14, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_122, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__print_output, 720, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_123)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 720; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,755 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,755 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,755 213 | PyCode_New( 2025-09-08T01:14:44,755 | ^~~~~~~~~~ 2025-09-08T01:14:44,787 rnacounter/rnacounter.c:27951:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:44,787 27951 | __pyx_k_codeobj_125 = (PyObject*)__Pyx_PyCode_New(3, 0, 25, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_124, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__rnacounter_main, 740, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_125)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 740; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,787 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,787 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,787 213 | PyCode_New( 2025-09-08T01:14:44,787 | ^~~~~~~~~~ 2025-09-08T01:14:44,822 rnacounter/rnacounter.c:27951:227: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:44,822 27951 | __pyx_k_codeobj_125 = (PyObject*)__Pyx_PyCode_New(3, 0, 25, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_124, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__rnacounter_main, 740, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_125)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 740; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,823 | ^~~ 2025-09-08T01:14:44,823 | | 2025-09-08T01:14:44,823 | int 2025-09-08T01:14:44,823 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,823 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,823 | ^~~~~ 2025-09-08T01:14:44,823 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:44,823 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,823 | ~~~~~~~~~~^ 2025-09-08T01:14:44,858 rnacounter/rnacounter.c:27951:232: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:44,858 27951 | __pyx_k_codeobj_125 = (PyObject*)__Pyx_PyCode_New(3, 0, 25, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_124, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__rnacounter_main, 740, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_125)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 740; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,858 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,858 | | 2025-09-08T01:14:44,859 | PyObject * {aka struct _object *} 2025-09-08T01:14:44,859 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,859 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,859 | ^~~~ 2025-09-08T01:14:44,859 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:44,859 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,859 | ~~~~^ 2025-09-08T01:14:44,894 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:44,894 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,894 | ^~~~~~~~~~ 2025-09-08T01:14:44,894 rnacounter/rnacounter.c:27951:36: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,894 27951 | __pyx_k_codeobj_125 = (PyObject*)__Pyx_PyCode_New(3, 0, 25, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_124, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__rnacounter_main, 740, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_125)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 740; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,894 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,894 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,894 213 | PyCode_New( 2025-09-08T01:14:44,895 | ^~~~~~~~~~ 2025-09-08T01:14:44,926 rnacounter/rnacounter.c:27960:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:44,926 27960 | __pyx_k_codeobj_126 = (PyObject*)__Pyx_PyCode_New(0, 0, 0, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__usage_string, 837, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_126)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,926 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,926 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:44,926 213 | PyCode_New( 2025-09-08T01:14:44,926 | ^~~~~~~~~~ 2025-09-08T01:14:44,961 rnacounter/rnacounter.c:27960:223: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:44,962 27960 | __pyx_k_codeobj_126 = (PyObject*)__Pyx_PyCode_New(0, 0, 0, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__usage_string, 837, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_126)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,962 | ^~~ 2025-09-08T01:14:44,962 | | 2025-09-08T01:14:44,962 | int 2025-09-08T01:14:44,962 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,962 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,962 | ^~~~~ 2025-09-08T01:14:44,962 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:44,962 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,963 | ~~~~~~~~~~^ 2025-09-08T01:14:44,997 rnacounter/rnacounter.c:27960:228: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:44,997 27960 | __pyx_k_codeobj_126 = (PyObject*)__Pyx_PyCode_New(0, 0, 0, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__usage_string, 837, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_126)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:44,997 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:44,998 | | 2025-09-08T01:14:44,998 | PyObject * {aka struct _object *} 2025-09-08T01:14:44,998 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:44,998 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:44,998 | ^~~~ 2025-09-08T01:14:44,998 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:44,998 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:44,998 | ~~~~^ 2025-09-08T01:14:45,033 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:45,033 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:45,033 | ^~~~~~~~~~ 2025-09-08T01:14:45,033 rnacounter/rnacounter.c:27960:36: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:45,033 27960 | __pyx_k_codeobj_126 = (PyObject*)__Pyx_PyCode_New(0, 0, 0, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__usage_string, 837, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_126)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:45,033 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:45,033 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:45,034 213 | PyCode_New( 2025-09-08T01:14:45,034 | ^~~~~~~~~~ 2025-09-08T01:14:45,065 rnacounter/rnacounter.c:27972:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:45,065 27972 | __pyx_k_codeobj_128 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_127, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__errmsg, 840, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_128)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:45,065 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:45,065 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:45,065 213 | PyCode_New( 2025-09-08T01:14:45,066 | ^~~~~~~~~~ 2025-09-08T01:14:45,101 rnacounter/rnacounter.c:27972:217: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:45,101 27972 | __pyx_k_codeobj_128 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_127, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__errmsg, 840, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_128)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:45,101 | ^~~ 2025-09-08T01:14:45,101 | | 2025-09-08T01:14:45,101 | int 2025-09-08T01:14:45,101 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:45,101 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:45,101 | ^~~~~ 2025-09-08T01:14:45,101 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:45,102 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:45,102 | ~~~~~~~~~~^ 2025-09-08T01:14:45,136 rnacounter/rnacounter.c:27972:222: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:45,137 27972 | __pyx_k_codeobj_128 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_127, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__errmsg, 840, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_128)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:45,137 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:45,137 | | 2025-09-08T01:14:45,137 | PyObject * {aka struct _object *} 2025-09-08T01:14:45,137 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:45,137 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:45,137 | ^~~~ 2025-09-08T01:14:45,137 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:45,137 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:45,137 | ~~~~^ 2025-09-08T01:14:45,172 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:45,172 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:45,172 | ^~~~~~~~~~ 2025-09-08T01:14:45,172 rnacounter/rnacounter.c:27972:36: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:45,172 27972 | __pyx_k_codeobj_128 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_127, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__errmsg, 840, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_128)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:45,173 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:45,173 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:45,173 213 | PyCode_New( 2025-09-08T01:14:45,173 | ^~~~~~~~~~ 2025-09-08T01:14:45,204 rnacounter/rnacounter.c:27984:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:45,204 27984 | __pyx_k_codeobj_130 = (PyObject*)__Pyx_PyCode_New(1, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_129, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_args, 844, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_130)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:45,205 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:45,205 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:45,205 213 | PyCode_New( 2025-09-08T01:14:45,205 | ^~~~~~~~~~ 2025-09-08T01:14:45,240 rnacounter/rnacounter.c:27984:222: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:45,240 27984 | __pyx_k_codeobj_130 = (PyObject*)__Pyx_PyCode_New(1, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_129, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_args, 844, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_130)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:45,240 | ^~~ 2025-09-08T01:14:45,240 | | 2025-09-08T01:14:45,240 | int 2025-09-08T01:14:45,240 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:45,241 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:45,241 | ^~~~~ 2025-09-08T01:14:45,241 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:45,241 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:45,241 | ~~~~~~~~~~^ 2025-09-08T01:14:45,276 rnacounter/rnacounter.c:27984:227: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:45,276 27984 | __pyx_k_codeobj_130 = (PyObject*)__Pyx_PyCode_New(1, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_129, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_args, 844, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_130)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:45,276 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:45,276 | | 2025-09-08T01:14:45,276 | PyObject * {aka struct _object *} 2025-09-08T01:14:45,276 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:45,276 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:45,276 | ^~~~ 2025-09-08T01:14:45,277 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:45,277 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:45,277 | ~~~~^ 2025-09-08T01:14:45,311 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:45,311 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:45,312 | ^~~~~~~~~~ 2025-09-08T01:14:45,312 rnacounter/rnacounter.c:27984:36: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:45,312 27984 | __pyx_k_codeobj_130 = (PyObject*)__Pyx_PyCode_New(1, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_129, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_115, __pyx_n_s__parse_args, 844, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_130)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T01:14:45,312 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:45,312 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:45,312 213 | PyCode_New( 2025-09-08T01:14:45,312 | ^~~~~~~~~~ 2025-09-08T01:14:45,391 rnacounter/rnacounter.c: In function ‘__Pyx_ErrRestore’: 2025-09-08T01:14:45,424 rnacounter/rnacounter.c:28717:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T01:14:45,424 28717 | tmp_type = tstate->curexc_type; 2025-09-08T01:14:45,424 | ^~ 2025-09-08T01:14:45,458 rnacounter/rnacounter.c:28718:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T01:14:45,458 28718 | tmp_value = tstate->curexc_value; 2025-09-08T01:14:45,458 | ^~ 2025-09-08T01:14:45,491 rnacounter/rnacounter.c:28719:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:45,491 28719 | tmp_tb = tstate->curexc_traceback; 2025-09-08T01:14:45,491 | ^~ 2025-09-08T01:14:45,525 rnacounter/rnacounter.c:28720:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T01:14:45,525 28720 | tstate->curexc_type = type; 2025-09-08T01:14:45,525 | ^~ 2025-09-08T01:14:45,558 rnacounter/rnacounter.c:28721:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T01:14:45,558 28721 | tstate->curexc_value = value; 2025-09-08T01:14:45,558 | ^~ 2025-09-08T01:14:45,592 rnacounter/rnacounter.c:28722:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:45,592 28722 | tstate->curexc_traceback = tb; 2025-09-08T01:14:45,592 | ^~ 2025-09-08T01:14:45,592 rnacounter/rnacounter.c: In function ‘__Pyx_ErrFetch’: 2025-09-08T01:14:45,625 rnacounter/rnacounter.c:28733:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T01:14:45,626 28733 | *type = tstate->curexc_type; 2025-09-08T01:14:45,626 | ^~ 2025-09-08T01:14:45,659 rnacounter/rnacounter.c:28734:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T01:14:45,659 28734 | *value = tstate->curexc_value; 2025-09-08T01:14:45,659 | ^~ 2025-09-08T01:14:45,692 rnacounter/rnacounter.c:28735:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:45,693 28735 | *tb = tstate->curexc_traceback; 2025-09-08T01:14:45,693 | ^~ 2025-09-08T01:14:45,726 rnacounter/rnacounter.c:28736:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T01:14:45,726 28736 | tstate->curexc_type = 0; 2025-09-08T01:14:45,726 | ^~ 2025-09-08T01:14:45,759 rnacounter/rnacounter.c:28737:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T01:14:45,760 28737 | tstate->curexc_value = 0; 2025-09-08T01:14:45,760 | ^~ 2025-09-08T01:14:45,793 rnacounter/rnacounter.c:28738:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:45,793 28738 | tstate->curexc_traceback = 0; 2025-09-08T01:14:45,793 | ^~ 2025-09-08T01:14:45,826 rnacounter/rnacounter.c: In function ‘__Pyx_GetException’: 2025-09-08T01:14:45,860 rnacounter/rnacounter.c:28846:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T01:14:45,860 28846 | local_type = tstate->curexc_type; 2025-09-08T01:14:45,860 | ^~ 2025-09-08T01:14:45,893 rnacounter/rnacounter.c:28847:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T01:14:45,894 28847 | local_value = tstate->curexc_value; 2025-09-08T01:14:45,894 | ^~ 2025-09-08T01:14:45,927 rnacounter/rnacounter.c:28848:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:45,927 28848 | local_tb = tstate->curexc_traceback; 2025-09-08T01:14:45,927 | ^~ 2025-09-08T01:14:45,961 rnacounter/rnacounter.c:28849:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T01:14:45,961 28849 | tstate->curexc_type = 0; 2025-09-08T01:14:45,961 | ^~ 2025-09-08T01:14:45,994 rnacounter/rnacounter.c:28850:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T01:14:45,994 28850 | tstate->curexc_value = 0; 2025-09-08T01:14:45,994 | ^~ 2025-09-08T01:14:46,028 rnacounter/rnacounter.c:28851:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:46,028 28851 | tstate->curexc_traceback = 0; 2025-09-08T01:14:46,028 | ^~ 2025-09-08T01:14:46,062 rnacounter/rnacounter.c:28857:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T01:14:46,062 28857 | if (unlikely(tstate->curexc_type)) 2025-09-08T01:14:46,062 | ^~ 2025-09-08T01:14:46,062 rnacounter/rnacounter.c:466:45: note: in definition of macro ‘unlikely’ 2025-09-08T01:14:46,062 466 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T01:14:46,062 | ^ 2025-09-08T01:14:46,129 rnacounter/rnacounter.c:28873:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T01:14:46,129 28873 | tmp_type = tstate->exc_type; 2025-09-08T01:14:46,129 | ^~~~~~~~ 2025-09-08T01:14:46,129 | exc_state 2025-09-08T01:14:46,162 rnacounter/rnacounter.c:28874:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T01:14:46,162 28874 | tmp_value = tstate->exc_value; 2025-09-08T01:14:46,162 | ^~ 2025-09-08T01:14:46,195 rnacounter/rnacounter.c:28875:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T01:14:46,195 28875 | tmp_tb = tstate->exc_traceback; 2025-09-08T01:14:46,195 | ^~ 2025-09-08T01:14:46,243 rnacounter/rnacounter.c:28876:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T01:14:46,243 28876 | tstate->exc_type = local_type; 2025-09-08T01:14:46,243 | ^~~~~~~~ 2025-09-08T01:14:46,243 | exc_state 2025-09-08T01:14:46,276 rnacounter/rnacounter.c:28877:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T01:14:46,276 28877 | tstate->exc_value = local_value; 2025-09-08T01:14:46,276 | ^~ 2025-09-08T01:14:46,309 rnacounter/rnacounter.c:28878:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T01:14:46,309 28878 | tstate->exc_traceback = local_tb; 2025-09-08T01:14:46,309 | ^~ 2025-09-08T01:14:46,336 rnacounter/rnacounter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-08T01:14:46,384 rnacounter/rnacounter.c:28984:22: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-08T01:14:46,385 28984 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2025-09-08T01:14:46,385 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:46,385 | PyDict_GET_SIZE 2025-09-08T01:14:46,481 rnacounter/rnacounter.c: In function ‘__Pyx_Raise’: 2025-09-08T01:14:46,529 rnacounter/rnacounter.c:29157:26: error: implicit declaration of function ‘PyEval_CallObject’; did you mean ‘PyObject_CallObject’? [-Wimplicit-function-declaration] 2025-09-08T01:14:46,530 29157 | owned_instance = PyEval_CallObject(type, args); 2025-09-08T01:14:46,530 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:46,530 | PyObject_CallObject 2025-09-08T01:14:46,566 rnacounter/rnacounter.c:29157:24: error: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:46,567 29157 | owned_instance = PyEval_CallObject(type, args); 2025-09-08T01:14:46,567 | ^ 2025-09-08T01:14:46,632 rnacounter/rnacounter.c:29200:34: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:46,632 29200 | PyObject* tmp_tb = tstate->curexc_traceback; 2025-09-08T01:14:46,632 | ^~ 2025-09-08T01:14:46,666 rnacounter/rnacounter.c:29203:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:46,666 29203 | tstate->curexc_traceback = tb; 2025-09-08T01:14:46,666 | ^~ 2025-09-08T01:14:46,722 rnacounter/rnacounter.c: In function ‘__Pyx_PyIter_Next2’: 2025-09-08T01:14:46,756 rnacounter/rnacounter.c:29247:31: error: ‘_PyObject_NextNotImplemented’ undeclared (first use in this function); did you mean ‘PyObject_HashNotImplemented’? 2025-09-08T01:14:46,756 29247 | if (unlikely(iternext == &_PyObject_NextNotImplemented)) 2025-09-08T01:14:46,756 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:46,756 rnacounter/rnacounter.c:466:45: note: in definition of macro ‘unlikely’ 2025-09-08T01:14:46,757 466 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T01:14:46,757 | ^ 2025-09-08T01:14:46,785 rnacounter/rnacounter.c: In function ‘__Pyx_IterFinish’: 2025-09-08T01:14:46,818 rnacounter/rnacounter.c:29378:32: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T01:14:46,819 29378 | PyObject* exc_type = tstate->curexc_type; 2025-09-08T01:14:46,819 | ^~ 2025-09-08T01:14:46,853 rnacounter/rnacounter.c:29382:31: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T01:14:46,853 29382 | exc_value = tstate->curexc_value; 2025-09-08T01:14:46,853 | ^~ 2025-09-08T01:14:46,887 rnacounter/rnacounter.c:29383:28: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:46,887 29383 | exc_tb = tstate->curexc_traceback; 2025-09-08T01:14:46,887 | ^~ 2025-09-08T01:14:46,921 rnacounter/rnacounter.c:29384:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T01:14:46,921 29384 | tstate->curexc_type = 0; 2025-09-08T01:14:46,921 | ^~ 2025-09-08T01:14:46,955 rnacounter/rnacounter.c:29385:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T01:14:46,955 29385 | tstate->curexc_value = 0; 2025-09-08T01:14:46,955 | ^~ 2025-09-08T01:14:46,989 rnacounter/rnacounter.c:29386:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T01:14:46,989 29386 | tstate->curexc_traceback = 0; 2025-09-08T01:14:46,989 | ^~ 2025-09-08T01:14:47,419 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_Call’: 2025-09-08T01:14:47,471 rnacounter/rnacounter.c:30631:16: error: implicit declaration of function ‘PyCFunction_Call’; did you mean ‘PyCFunction_New’? [-Wimplicit-function-declaration] 2025-09-08T01:14:47,471 30631 | return PyCFunction_Call(func, arg, kw); 2025-09-08T01:14:47,471 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:47,471 | PyCFunction_New 2025-09-08T01:14:47,510 rnacounter/rnacounter.c:30631:16: error: returning ‘int’ from a function with return type ‘PyObject *’ {aka ‘struct _object *’} makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:47,510 30631 | return PyCFunction_Call(func, arg, kw); 2025-09-08T01:14:47,511 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T01:14:47,529 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_init’: 2025-09-08T01:14:47,579 rnacounter/rnacounter.c:30691:41: error: ‘PyCFunction_Call’ undeclared (first use in this function); did you mean ‘PyCFunction_New’? 2025-09-08T01:14:47,579 30691 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2025-09-08T01:14:47,579 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:47,579 | PyCFunction_New 2025-09-08T01:14:47,612 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSave’: 2025-09-08T01:14:47,662 rnacounter/rnacounter.c:30760:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T01:14:47,663 30760 | *type = tstate->exc_type; 2025-09-08T01:14:47,663 | ^~~~~~~~ 2025-09-08T01:14:47,663 | exc_state 2025-09-08T01:14:47,697 rnacounter/rnacounter.c:30761:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T01:14:47,697 30761 | *value = tstate->exc_value; 2025-09-08T01:14:47,698 | ^~ 2025-09-08T01:14:47,732 rnacounter/rnacounter.c:30762:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T01:14:47,732 30762 | *tb = tstate->exc_traceback; 2025-09-08T01:14:47,732 | ^~ 2025-09-08T01:14:47,733 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionReset’: 2025-09-08T01:14:47,783 rnacounter/rnacounter.c:30774:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T01:14:47,783 30774 | tmp_type = tstate->exc_type; 2025-09-08T01:14:47,783 | ^~~~~~~~ 2025-09-08T01:14:47,783 | exc_state 2025-09-08T01:14:47,818 rnacounter/rnacounter.c:30775:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T01:14:47,818 30775 | tmp_value = tstate->exc_value; 2025-09-08T01:14:47,818 | ^~ 2025-09-08T01:14:47,852 rnacounter/rnacounter.c:30776:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T01:14:47,853 30776 | tmp_tb = tstate->exc_traceback; 2025-09-08T01:14:47,853 | ^~ 2025-09-08T01:14:47,903 rnacounter/rnacounter.c:30777:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T01:14:47,903 30777 | tstate->exc_type = type; 2025-09-08T01:14:47,903 | ^~~~~~~~ 2025-09-08T01:14:47,903 | exc_state 2025-09-08T01:14:47,937 rnacounter/rnacounter.c:30778:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T01:14:47,938 30778 | tstate->exc_value = value; 2025-09-08T01:14:47,938 | ^~ 2025-09-08T01:14:47,972 rnacounter/rnacounter.c:30779:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T01:14:47,973 30779 | tstate->exc_traceback = tb; 2025-09-08T01:14:47,973 | ^~ 2025-09-08T01:14:48,063 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSwap’: 2025-09-08T01:14:48,115 rnacounter/rnacounter.c:31735:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T01:14:48,115 31735 | tmp_type = tstate->exc_type; 2025-09-08T01:14:48,115 | ^~~~~~~~ 2025-09-08T01:14:48,115 | exc_state 2025-09-08T01:14:48,151 rnacounter/rnacounter.c:31736:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T01:14:48,151 31736 | tmp_value = tstate->exc_value; 2025-09-08T01:14:48,151 | ^~ 2025-09-08T01:14:48,186 rnacounter/rnacounter.c:31737:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T01:14:48,187 31737 | tmp_tb = tstate->exc_traceback; 2025-09-08T01:14:48,187 | ^~ 2025-09-08T01:14:48,238 rnacounter/rnacounter.c:31738:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T01:14:48,238 31738 | tstate->exc_type = *type; 2025-09-08T01:14:48,238 | ^~~~~~~~ 2025-09-08T01:14:48,238 | exc_state 2025-09-08T01:14:48,274 rnacounter/rnacounter.c:31739:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T01:14:48,274 31739 | tstate->exc_value = *value; 2025-09-08T01:14:48,274 | ^~ 2025-09-08T01:14:48,309 rnacounter/rnacounter.c:31740:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T01:14:48,310 31740 | tstate->exc_traceback = *tb; 2025-09-08T01:14:48,310 | ^~ 2025-09-08T01:14:48,312 In file included from /usr/include/python3.13/Python.h:63: 2025-09-08T01:14:48,312 rnacounter/rnacounter.c: In function ‘__Pyx_Generator_SendEx’: 2025-09-08T01:14:48,388 rnacounter/rnacounter.c:31862:30: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘frame’ 2025-09-08T01:14:48,388 31862 | Py_XINCREF(tstate->frame); 2025-09-08T01:14:48,388 | ^~ 2025-09-08T01:14:48,388 /usr/include/python3.13/pyport.h:19:38: note: in definition of macro ‘_Py_CAST’ 2025-09-08T01:14:48,389 19 | #define _Py_CAST(type, expr) ((type)(expr)) 2025-09-08T01:14:48,389 | ^~~~ 2025-09-08T01:14:48,389 /usr/include/python3.13/object.h:1041:37: note: in expansion of macro ‘_PyObject_CAST’ 2025-09-08T01:14:48,389 1041 | # define Py_XINCREF(op) Py_XINCREF(_PyObject_CAST(op)) 2025-09-08T01:14:48,389 | ^~~~~~~~~~~~~~ 2025-09-08T01:14:48,389 rnacounter/rnacounter.c:31862:13: note: in expansion of macro ‘Py_XINCREF’ 2025-09-08T01:14:48,389 31862 | Py_XINCREF(tstate->frame); 2025-09-08T01:14:48,389 | ^~~~~~~~~~ 2025-09-08T01:14:48,424 rnacounter/rnacounter.c:31864:14: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T01:14:48,424 31864 | f->f_back = tstate->frame; 2025-09-08T01:14:48,424 | ^~ 2025-09-08T01:14:48,464 rnacounter/rnacounter.c:31864:31: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘frame’ 2025-09-08T01:14:48,464 31864 | f->f_back = tstate->frame; 2025-09-08T01:14:48,464 | ^~ 2025-09-08T01:14:48,540 rnacounter/rnacounter.c:31886:23: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T01:14:48,540 31886 | Py_CLEAR(f->f_back); 2025-09-08T01:14:48,540 | ^~ 2025-09-08T01:14:48,540 /usr/include/python3.13/pyport.h:558:39: note: in definition of macro ‘_Py_TYPEOF’ 2025-09-08T01:14:48,540 558 | # define _Py_TYPEOF(expr) __typeof__(expr) 2025-09-08T01:14:48,540 | ^~~~ 2025-09-08T01:14:48,540 rnacounter/rnacounter.c:31886:13: note: in expansion of macro ‘Py_CLEAR’ 2025-09-08T01:14:48,540 31886 | Py_CLEAR(f->f_back); 2025-09-08T01:14:48,540 | ^~~~~~~~ 2025-09-08T01:14:48,579 In file included from /usr/include/python3.13/Python.h:72: 2025-09-08T01:14:48,580 rnacounter/rnacounter.c:31886:23: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T01:14:48,580 31886 | Py_CLEAR(f->f_back); 2025-09-08T01:14:48,580 | ^~ 2025-09-08T01:14:48,580 /usr/include/python3.13/object.h:1012:41: note: in definition of macro ‘Py_CLEAR’ 2025-09-08T01:14:48,580 1012 | _Py_TYPEOF(op)* _tmp_op_ptr = &(op); \ 2025-09-08T01:14:48,580 | ^~ 2025-09-08T01:14:48,659 rnacounter/rnacounter.c:31886:23: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T01:14:48,659 31886 | Py_CLEAR(f->f_back); 2025-09-08T01:14:48,659 | ^~ 2025-09-08T01:14:48,659 /usr/include/python3.13/pyport.h:558:39: note: in definition of macro ‘_Py_TYPEOF’ 2025-09-08T01:14:48,659 558 | # define _Py_TYPEOF(expr) __typeof__(expr) 2025-09-08T01:14:48,660 | ^~~~ 2025-09-08T01:14:48,660 rnacounter/rnacounter.c:31886:13: note: in expansion of macro ‘Py_CLEAR’ 2025-09-08T01:14:48,660 31886 | Py_CLEAR(f->f_back); 2025-09-08T01:14:48,660 | ^~~~~~~~ 2025-09-08T01:14:48,699 /usr/include/python3.13/object.h:1014:25: warning: comparison between pointer and integer 2025-09-08T01:14:48,699 1014 | if (_tmp_old_op != NULL) { \ 2025-09-08T01:14:48,699 | ^~ 2025-09-08T01:14:48,699 rnacounter/rnacounter.c:31886:13: note: in expansion of macro ‘Py_CLEAR’ 2025-09-08T01:14:48,699 31886 | Py_CLEAR(f->f_back); 2025-09-08T01:14:48,699 | ^~~~~~~~ 2025-09-08T01:14:48,739 /usr/include/python3.13/object.h:1015:26: error: assignment to ‘int’ from ‘void *’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:48,739 1015 | *_tmp_op_ptr = _Py_NULL; \ 2025-09-08T01:14:48,739 | ^ 2025-09-08T01:14:48,739 rnacounter/rnacounter.c:31886:13: note: in expansion of macro ‘Py_CLEAR’ 2025-09-08T01:14:48,739 31886 | Py_CLEAR(f->f_back); 2025-09-08T01:14:48,739 | ^~~~~~~~ 2025-09-08T01:14:48,881 rnacounter/rnacounter.c: In function ‘__Pyx_Generator_del’: 2025-09-08T01:14:48,917 rnacounter/rnacounter.c:32135:5: error: ‘_Py_DEC_REFTOTAL’ undeclared (first use in this function) 2025-09-08T01:14:48,917 32135 | _Py_DEC_REFTOTAL; 2025-09-08T01:14:48,917 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:48,989 rnacounter/rnacounter.c: In function ‘__Pyx_CreateCodeObjectForTraceback’: 2025-09-08T01:14:49,026 rnacounter/rnacounter.c:32464:5: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T01:14:49,026 32464 | py_code = __Pyx_PyCode_New( 2025-09-08T01:14:49,026 | ^~~~~~~ 2025-09-08T01:14:49,026 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:49,026 213 | PyCode_New( 2025-09-08T01:14:49,026 | ^~~~~~~~~~ 2025-09-08T01:14:49,063 rnacounter/rnacounter.c:32478:9: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T01:14:49,063 32478 | py_line, /*int firstlineno,*/ 2025-09-08T01:14:49,063 | ^~~~~~~ 2025-09-08T01:14:49,063 | | 2025-09-08T01:14:49,063 | int 2025-09-08T01:14:49,063 rnacounter/rnacounter.c:119:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:49,063 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:49,063 | ^~~~~ 2025-09-08T01:14:49,064 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T01:14:49,064 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:49,064 | ~~~~~~~~~~^ 2025-09-08T01:14:49,104 rnacounter/rnacounter.c:32479:9: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T01:14:49,104 32479 | __pyx_empty_bytes /*PyObject *lnotab*/ 2025-09-08T01:14:49,104 | ^~~~~~~~~~~~~~~~~ 2025-09-08T01:14:49,104 | | 2025-09-08T01:14:49,104 | PyObject * {aka struct _object *} 2025-09-08T01:14:49,104 rnacounter/rnacounter.c:119:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:49,105 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:49,105 | ^~~~ 2025-09-08T01:14:49,105 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T01:14:49,105 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T01:14:49,105 | ~~~~^ 2025-09-08T01:14:49,145 rnacounter/rnacounter.c:119:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T01:14:49,145 119 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T01:14:49,145 | ^~~~~~~~~~ 2025-09-08T01:14:49,145 rnacounter/rnacounter.c:32464:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T01:14:49,146 32464 | py_code = __Pyx_PyCode_New( 2025-09-08T01:14:49,146 | ^~~~~~~~~~~~~~~~ 2025-09-08T01:14:49,146 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T01:14:49,146 213 | PyCode_New( 2025-09-08T01:14:49,146 | ^~~~~~~~~~ 2025-09-08T01:14:49,171 rnacounter/rnacounter.c: In function ‘__Pyx_AddTraceback’: 2025-09-08T01:14:49,208 rnacounter/rnacounter.c:32510:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T01:14:49,208 32510 | py_frame->f_lineno = py_line; 2025-09-08T01:14:49,208 | ^~ 2025-09-08T01:14:49,644 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T01:14:49,825 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T01:14:49,837 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T01:14:49,837 exec(compile('"'"''"'"''"'"' 2025-09-08T01:14:49,837 # This is -- a caller that pip uses to run setup.py 2025-09-08T01:14:49,837 # 2025-09-08T01:14:49,837 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T01:14:49,837 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T01:14:49,837 # - It provides a clear error message when setuptools is not installed. 2025-09-08T01:14:49,837 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T01:14:49,837 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T01:14:49,837 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T01:14:49,837 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T01:14:49,837 import os, sys, tokenize, traceback 2025-09-08T01:14:49,837 2025-09-08T01:14:49,837 try: 2025-09-08T01:14:49,837 import setuptools 2025-09-08T01:14:49,837 except ImportError: 2025-09-08T01:14:49,837 print( 2025-09-08T01:14:49,837 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T01:14:49,837 "the build environment with exception:", 2025-09-08T01:14:49,837 file=sys.stderr, 2025-09-08T01:14:49,837 ) 2025-09-08T01:14:49,837 traceback.print_exc() 2025-09-08T01:14:49,837 sys.exit(1) 2025-09-08T01:14:49,837 2025-09-08T01:14:49,837 __file__ = %r 2025-09-08T01:14:49,837 sys.argv[0] = __file__ 2025-09-08T01:14:49,837 2025-09-08T01:14:49,837 if os.path.exists(__file__): 2025-09-08T01:14:49,837 filename = __file__ 2025-09-08T01:14:49,837 with tokenize.open(__file__) as f: 2025-09-08T01:14:49,837 setup_py_code = f.read() 2025-09-08T01:14:49,837 else: 2025-09-08T01:14:49,837 filename = "" 2025-09-08T01:14:49,837 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T01:14:49,837 2025-09-08T01:14:49,837 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T01:14:49,837 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-xdez8tyr/rnacounter_31c5746190f84e28837c51f72b5a99d4/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-f4p0p2td[/] 2025-09-08T01:14:49,838 [bold magenta]cwd[/]: /tmp/pip-wheel-xdez8tyr/rnacounter_31c5746190f84e28837c51f72b5a99d4/ 2025-09-08T01:14:49,838 Building wheel for rnacounter (setup.py): finished with status 'error' 2025-09-08T01:14:49,839 ERROR: Failed building wheel for rnacounter 2025-09-08T01:14:49,840 Running setup.py clean for rnacounter 2025-09-08T01:14:49,841 Running command python setup.py clean 2025-09-08T01:14:50,769 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T01:14:50,769 warnings.warn(msg) 2025-09-08T01:14:51,237 running clean 2025-09-08T01:14:51,384 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T01:14:51,384 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T01:14:51,386 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T01:14:51,386 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T01:14:51,386 removing 'build' 2025-09-08T01:14:51,523 Failed to build rnacounter 2025-09-08T01:14:51,524 ERROR: Failed to build one or more wheels 2025-09-08T01:14:51,525 Exception information: 2025-09-08T01:14:51,525 Traceback (most recent call last): 2025-09-08T01:14:51,525 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T01:14:51,525 status = _inner_run() 2025-09-08T01:14:51,525 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T01:14:51,525 return self.run(options, args) 2025-09-08T01:14:51,525 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T01:14:51,525 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T01:14:51,525 return func(self, options, args) 2025-09-08T01:14:51,525 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T01:14:51,525 raise CommandError("Failed to build one or more wheels") 2025-09-08T01:14:51,525 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T01:14:51,529 Removed build tracker: '/tmp/pip-build-tracker-w8f1dspd'