2025-09-08T01:19:45,342 Created temporary directory: /tmp/pip-build-tracker-5jjvl9rk 2025-09-08T01:19:45,343 Initialized build tracking at /tmp/pip-build-tracker-5jjvl9rk 2025-09-08T01:19:45,343 Created build tracker: /tmp/pip-build-tracker-5jjvl9rk 2025-09-08T01:19:45,343 Entered build tracker: /tmp/pip-build-tracker-5jjvl9rk 2025-09-08T01:19:45,343 Created temporary directory: /tmp/pip-wheel-bjrr_6mr 2025-09-08T01:19:45,347 Created temporary directory: /tmp/pip-ephem-wheel-cache-62os2xtv 2025-09-08T01:19:45,405 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T01:19:45,407 2 location(s) to search for versions of hla-genotyper: 2025-09-08T01:19:45,407 * https://pypi.org/simple/hla-genotyper/ 2025-09-08T01:19:45,407 * https://www.piwheels.org/simple/hla-genotyper/ 2025-09-08T01:19:45,408 Fetching project page and analyzing links: https://pypi.org/simple/hla-genotyper/ 2025-09-08T01:19:45,408 Getting page https://pypi.org/simple/hla-genotyper/ 2025-09-08T01:19:45,410 Found index url https://pypi.org/simple/ 2025-09-08T01:19:45,558 Fetched page https://pypi.org/simple/hla-genotyper/ as application/vnd.pypi.simple.v1+json 2025-09-08T01:19:45,561 Found link https://files.pythonhosted.org/packages/fc/35/392f75f180b59dd207aa08201a6355ef7e499f0193333606c406a7ca7b5b/hla-genotyper-0.3.0b19.tar.gz (from https://pypi.org/simple/hla-genotyper/), version: 0.3.0b19 2025-09-08T01:19:45,562 Found link https://files.pythonhosted.org/packages/2c/2f/d55483a296af676a49a0e6d58454b1467adabb63068ab40bd047d80e44f8/hla-genotyper-0.4.0b1.tar.gz (from https://pypi.org/simple/hla-genotyper/), version: 0.4.0b1 2025-09-08T01:19:45,562 Found link https://files.pythonhosted.org/packages/9e/c4/2c7116c6d87c90e076bf577c72b461b0a6e205a839b4c8c8543a3e488390/hla-genotyper-0.4.1b1.linux-x86_64.tar.gz (from https://pypi.org/simple/hla-genotyper/), version: 0.4.1b1.linux-x86_64 2025-09-08T01:19:45,563 Found link https://files.pythonhosted.org/packages/04/10/442291c9d5b7b83523903dcaf1063d8f52d437c5b17aec9d96aec7c8938a/hla-genotyper-0.4.1b1.tar.gz (from https://pypi.org/simple/hla-genotyper/), version: 0.4.1b1 2025-09-08T01:19:45,563 Found link https://files.pythonhosted.org/packages/25/9d/c8d01a047076cfd2dc539565132df3bca67a368e7e96e811dacb2dced6ea/hla-genotyper-0.4.2b1.tar.gz (from https://pypi.org/simple/hla-genotyper/), version: 0.4.2b1 2025-09-08T01:19:45,564 Fetching project page and analyzing links: https://www.piwheels.org/simple/hla-genotyper/ 2025-09-08T01:19:45,565 Getting page https://www.piwheels.org/simple/hla-genotyper/ 2025-09-08T01:19:45,566 Found index url https://www.piwheels.org/simple/ 2025-09-08T01:19:45,682 Fetched page https://www.piwheels.org/simple/hla-genotyper/ as text/html 2025-09-08T01:19:45,683 Skipping link: not a file: https://www.piwheels.org/simple/hla-genotyper/ 2025-09-08T01:19:45,683 Skipping link: not a file: https://pypi.org/simple/hla-genotyper/ 2025-09-08T01:19:45,708 Given no hashes to check 1 links for project 'hla-genotyper': discarding no candidates 2025-09-08T01:19:45,709 Collecting hla-genotyper==0.3.0b19 2025-09-08T01:19:45,710 Created temporary directory: /tmp/pip-unpack-nmls5m4j 2025-09-08T01:19:45,858 Downloading hla-genotyper-0.3.0b19.tar.gz (2.7 MB) 2025-09-08T01:19:46,746 Added hla-genotyper==0.3.0b19 from https://files.pythonhosted.org/packages/fc/35/392f75f180b59dd207aa08201a6355ef7e499f0193333606c406a7ca7b5b/hla-genotyper-0.3.0b19.tar.gz to build tracker '/tmp/pip-build-tracker-5jjvl9rk' 2025-09-08T01:19:46,747 Running setup.py (path:/tmp/pip-wheel-bjrr_6mr/hla-genotyper_eda345cfd3c64d6eaa517c2c689c2dce/setup.py) egg_info for package hla-genotyper 2025-09-08T01:19:46,747 Created temporary directory: /tmp/pip-pip-egg-info-au50na7j 2025-09-08T01:19:46,747 Preparing metadata (setup.py): started 2025-09-08T01:19:46,748 Running command python setup.py egg_info 2025-09-08T01:19:47,289 Traceback (most recent call last): 2025-09-08T01:19:47,290 File "", line 2, in 2025-09-08T01:19:47,290 exec(compile(''' 2025-09-08T01:19:47,290 ~~~~^^^^^^^^^^^^ 2025-09-08T01:19:47,290 # This is -- a caller that pip uses to run setup.py 2025-09-08T01:19:47,291 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,291 ...<32 lines>... 2025-09-08T01:19:47,291 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T01:19:47,291 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,291 ''' % ('/tmp/pip-wheel-bjrr_6mr/hla-genotyper_eda345cfd3c64d6eaa517c2c689c2dce/setup.py',), "", "exec")) 2025-09-08T01:19:47,291 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,291 File "", line 35, in 2025-09-08T01:19:47,291 File "/tmp/pip-wheel-bjrr_6mr/hla-genotyper_eda345cfd3c64d6eaa517c2c689c2dce/setup.py", line 18, in 2025-09-08T01:19:47,292 execfile("hla/version.py") 2025-09-08T01:19:47,292 ^^^^^^^^ 2025-09-08T01:19:47,292 NameError: name 'execfile' is not defined 2025-09-08T01:19:47,374 ERROR: python setup.py egg_info exited with 1 2025-09-08T01:19:47,386 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T01:19:47,386 exec(compile('"'"''"'"''"'"' 2025-09-08T01:19:47,386 # This is -- a caller that pip uses to run setup.py 2025-09-08T01:19:47,386 # 2025-09-08T01:19:47,386 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T01:19:47,386 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T01:19:47,386 # - It provides a clear error message when setuptools is not installed. 2025-09-08T01:19:47,386 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T01:19:47,386 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T01:19:47,386 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T01:19:47,386 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T01:19:47,386 import os, sys, tokenize, traceback 2025-09-08T01:19:47,386 2025-09-08T01:19:47,386 try: 2025-09-08T01:19:47,386 import setuptools 2025-09-08T01:19:47,386 except ImportError: 2025-09-08T01:19:47,386 print( 2025-09-08T01:19:47,386 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T01:19:47,386 "the build environment with exception:", 2025-09-08T01:19:47,386 file=sys.stderr, 2025-09-08T01:19:47,386 ) 2025-09-08T01:19:47,386 traceback.print_exc() 2025-09-08T01:19:47,386 sys.exit(1) 2025-09-08T01:19:47,386 2025-09-08T01:19:47,386 __file__ = %r 2025-09-08T01:19:47,386 sys.argv[0] = __file__ 2025-09-08T01:19:47,386 2025-09-08T01:19:47,386 if os.path.exists(__file__): 2025-09-08T01:19:47,386 filename = __file__ 2025-09-08T01:19:47,386 with tokenize.open(__file__) as f: 2025-09-08T01:19:47,386 setup_py_code = f.read() 2025-09-08T01:19:47,386 else: 2025-09-08T01:19:47,386 filename = "" 2025-09-08T01:19:47,386 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T01:19:47,386 2025-09-08T01:19:47,386 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T01:19:47,386 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-bjrr_6mr/hla-genotyper_eda345cfd3c64d6eaa517c2c689c2dce/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-au50na7j[/] 2025-09-08T01:19:47,386 [bold magenta]cwd[/]: /tmp/pip-wheel-bjrr_6mr/hla-genotyper_eda345cfd3c64d6eaa517c2c689c2dce/ 2025-09-08T01:19:47,386 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T01:19:47,387 ERROR: metadata generation failed 2025-09-08T01:19:47,392 Exception information: 2025-09-08T01:19:47,392 Traceback (most recent call last): 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T01:19:47,392 call_subprocess( 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~^ 2025-09-08T01:19:47,392 args, 2025-09-08T01:19:47,392 ^^^^^ 2025-09-08T01:19:47,392 ...<2 lines>... 2025-09-08T01:19:47,392 spinner=spinner, 2025-09-08T01:19:47,392 ^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 ) 2025-09-08T01:19:47,392 ^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T01:19:47,392 raise error 2025-09-08T01:19:47,392 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T01:19:47,392 2025-09-08T01:19:47,392 The above exception was the direct cause of the following exception: 2025-09-08T01:19:47,392 2025-09-08T01:19:47,392 Traceback (most recent call last): 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T01:19:47,392 status = _inner_run() 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T01:19:47,392 return self.run(options, args) 2025-09-08T01:19:47,392 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T01:19:47,392 return func(self, options, args) 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T01:19:47,392 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T01:19:47,392 result = self._result = resolver.resolve( 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~~^ 2025-09-08T01:19:47,392 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T01:19:47,392 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 ) 2025-09-08T01:19:47,392 ^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T01:19:47,392 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T01:19:47,392 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T01:19:47,392 if not criterion.candidates: 2025-09-08T01:19:47,392 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T01:19:47,392 return bool(self._sequence) 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T01:19:47,392 self._bool = any(self) 2025-09-08T01:19:47,392 ~~~^^^^^^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T01:19:47,392 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T01:19:47,392 ^^^^^^^^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T01:19:47,392 candidate = func() 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T01:19:47,392 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T01:19:47,392 link, template, name, version 2025-09-08T01:19:47,392 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 ) 2025-09-08T01:19:47,392 ^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T01:19:47,392 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~^ 2025-09-08T01:19:47,392 link, 2025-09-08T01:19:47,392 ^^^^^ 2025-09-08T01:19:47,392 ...<3 lines>... 2025-09-08T01:19:47,392 version=version, 2025-09-08T01:19:47,392 ^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 ) 2025-09-08T01:19:47,392 ^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T01:19:47,392 super().__init__( 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~~^ 2025-09-08T01:19:47,392 link=link, 2025-09-08T01:19:47,392 ^^^^^^^^^^ 2025-09-08T01:19:47,392 ...<4 lines>... 2025-09-08T01:19:47,392 version=version, 2025-09-08T01:19:47,392 ^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 ) 2025-09-08T01:19:47,392 ^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T01:19:47,392 self.dist = self._prepare() 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~^^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T01:19:47,392 dist = self._prepare_distribution() 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T01:19:47,392 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T01:19:47,392 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T01:19:47,392 dist = _get_prepared_distribution( 2025-09-08T01:19:47,392 req, 2025-09-08T01:19:47,392 ...<3 lines>... 2025-09-08T01:19:47,392 self.check_build_deps, 2025-09-08T01:19:47,392 ) 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T01:19:47,392 abstract_dist.prepare_distribution_metadata( 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T01:19:47,392 finder, build_isolation, check_build_deps 2025-09-08T01:19:47,392 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 ) 2025-09-08T01:19:47,392 ^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T01:19:47,392 self.req.prepare_metadata() 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T01:19:47,392 self.metadata_directory = generate_metadata_legacy( 2025-09-08T01:19:47,392 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T01:19:47,392 build_env=self.build_env, 2025-09-08T01:19:47,392 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 ...<3 lines>... 2025-09-08T01:19:47,392 details=details, 2025-09-08T01:19:47,392 ^^^^^^^^^^^^^^^^ 2025-09-08T01:19:47,392 ) 2025-09-08T01:19:47,392 ^ 2025-09-08T01:19:47,392 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T01:19:47,392 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T01:19:47,392 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T01:19:47,412 Removed hla-genotyper==0.3.0b19 from https://files.pythonhosted.org/packages/fc/35/392f75f180b59dd207aa08201a6355ef7e499f0193333606c406a7ca7b5b/hla-genotyper-0.3.0b19.tar.gz from build tracker '/tmp/pip-build-tracker-5jjvl9rk' 2025-09-08T01:19:47,412 Removed build tracker: '/tmp/pip-build-tracker-5jjvl9rk'