2025-09-08T01:41:13,339 Created temporary directory: /tmp/pip-build-tracker-r_x6ol94 2025-09-08T01:41:13,340 Initialized build tracking at /tmp/pip-build-tracker-r_x6ol94 2025-09-08T01:41:13,340 Created build tracker: /tmp/pip-build-tracker-r_x6ol94 2025-09-08T01:41:13,340 Entered build tracker: /tmp/pip-build-tracker-r_x6ol94 2025-09-08T01:41:13,340 Created temporary directory: /tmp/pip-wheel-iwvr89eu 2025-09-08T01:41:13,343 Created temporary directory: /tmp/pip-ephem-wheel-cache-jid43sk4 2025-09-08T01:41:13,402 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T01:41:13,404 2 location(s) to search for versions of openbabel: 2025-09-08T01:41:13,404 * https://pypi.org/simple/openbabel/ 2025-09-08T01:41:13,404 * https://www.piwheels.org/simple/openbabel/ 2025-09-08T01:41:13,405 Fetching project page and analyzing links: https://pypi.org/simple/openbabel/ 2025-09-08T01:41:13,405 Getting page https://pypi.org/simple/openbabel/ 2025-09-08T01:41:13,406 Found index url https://pypi.org/simple/ 2025-09-08T01:41:13,553 Fetched page https://pypi.org/simple/openbabel/ as application/vnd.pypi.simple.v1+json 2025-09-08T01:41:13,567 Found link https://files.pythonhosted.org/packages/12/52/bb5e38737d41df09d11818031aa8de58620cd2689e872c9d3127d9eb9e37/openbabel-1.8.tar.gz (from https://pypi.org/simple/openbabel/), version: 1.8 2025-09-08T01:41:13,568 Found link https://files.pythonhosted.org/packages/af/63/976ef92f2eb827b0def52a69f537c9fe27754533e1f98735d167448894b2/openbabel-1.8.1.tar.gz (from https://pypi.org/simple/openbabel/), version: 1.8.1 2025-09-08T01:41:13,569 Found link https://files.pythonhosted.org/packages/41/46/5572ceaf814ca86894cc7a0847da5e89fc359a2b0970a7015cb67163d64a/openbabel-1.8.2.tar.gz (from https://pypi.org/simple/openbabel/), version: 1.8.2 2025-09-08T01:41:13,569 Found link https://files.pythonhosted.org/packages/fe/82/63910e38f48178dc6287c07272e9b486b436940d34a4b237a42bf4f7d40f/openbabel-1.8.4.tar.gz (from https://pypi.org/simple/openbabel/), version: 1.8.4 2025-09-08T01:41:13,570 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/6c/7c/1767429d25a0356867951530f071dcbd6e5605312418f7f5bb14bd46a510/openbabel-2.4.0-cp27-cp27m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,570 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/5a/37/942e55a00f80f2ebdab4c78c83f11445e1f98bf8914a28f3af195eab9a89/openbabel-2.4.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,570 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/5a/1d/d88ae45ac4216ebc96ad06d9f38dc5d697265d818ab056f5586cb1625d85/openbabel-2.4.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,571 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/0c/51/4708c4f562a64f7348becd2b72e1dcdc79a8a3ffd05f042bc8a999228549/openbabel-2.4.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,571 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/25/45/3c028047d525e149f0b8404d7cdbe85521d8c84edc8479e1a9ef5818fcd7/openbabel-2.4.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,571 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/02/27/ad7186bface39f076a2658ead15fea603101c40992524491f2f069f2d669/openbabel-2.4.0-cp35-cp35m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,572 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/80/fd/48436d0c173c24ec584589f301037fffe6be4acd6b02fb303cc6f96ebbbd/openbabel-2.4.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,572 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/e4/ac/5a232012b06c05f33ed0b09e736d6e93479491be6418e279d4d14c4aaa0d/openbabel-2.4.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,572 Found link https://files.pythonhosted.org/packages/ae/af/647b526abc984b4dbb92c170fb8052330036f66f9188f01c7a6170772c26/openbabel-2.4.0.tar.gz (from https://pypi.org/simple/openbabel/), version: 2.4.0 2025-09-08T01:41:13,573 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/d0/f7/c8d0e492ef43a384e711aee93fc33c57f20fddae9e177f5016251ee82197/openbabel-2.4.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,573 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/f1/cc/c8aa7a2c1839ec8eac008f1aff677fe0e7a9c1fe335fcf6341ec8b639fbb/openbabel-2.4.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,573 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/b4/9e/3f3e4fb99974a4c57a74b917c1962c3b85ece78276d539b3944a8f28e86e/openbabel-2.4.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,573 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/f9/ff/ab0b9b62fe7702bb3cff21ab7181bc31904986776c444c1e2d9a522c7f87/openbabel-2.4.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,573 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/ac/41/56090328ebc77c48ca3bc63867d9f0406a66b190091d5f9c2ac826d7076b/openbabel-2.4.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,573 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/24/10/9b1519717a985ba77f733f8be8a53f61179562ad32f14b0b978f2321f46c/openbabel-2.4.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,573 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/bc/fa/88f045c889f42272c829c7ecb57a45fba40e4e011186c69e3d3f97bf4487/openbabel-2.4.1-cp36-cp36m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,573 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/b1/be/7d35e887a7b6c79aa6e658cddcf32430cea202bfe7301deff7addfee05e1/openbabel-2.4.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,574 Found link https://files.pythonhosted.org/packages/9c/30/eb9c3d3d3b86981f6c6a7b8eceb6f4a13b9a12673efbc842b7cebe0ce39a/openbabel-2.4.1.tar.gz (from https://pypi.org/simple/openbabel/), version: 2.4.1 2025-09-08T01:41:13,574 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/e0/af/2ddb13189563095a1ac917e8ba93ae5dd387487fa22fa2407f71c50788a2/openbabel-3.0.0a1-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,574 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/08/5c/d89e561c86ff369159c5683b2bafbc63ad65759ffb4a076b99b7ed592f73/openbabel-3.0.0a1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,574 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/a8/50/6e3788ab2dcdb6bac56789cd064e17f3f39b2c23b3476826a6cae3b13ea6/openbabel-3.0.0a1-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,574 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/85/07/461afd0234606736f3ff2c83b8f2de8956748505d1f87d9519fcbdafdd09/openbabel-3.0.0a1-cp35-cp35m-win_amd64.whl (from 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https://files.pythonhosted.org/packages/11/07/76a50cd698820a62272dab11b0c825712dc896b29a75571581b9f9698e59/openbabel-3.0.0a1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,575 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/7d/42/a64ad010f61916dcd1f965ee4a20218103eec70f61b3620b4de0160e1c37/openbabel-3.0.0a1-cp38-cp38-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,575 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/65/08/96d1404315da3ab3aff1c4558ba65bbd02e326d29af4b0947efb4f918c4b/openbabel-3.0.0a1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,575 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/33/49/9575b9637fe5e27a790c8a88a9fec28aa03bfd11e607eff2bf2d450f3bbf/openbabel-3.0.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,575 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/51/cc/54b5b9f1c74dda56117cedebc68b6910300a802fc1904b7d2d6cecdcddb1/openbabel-3.0.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,575 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/10/ae/df0ea01e56ae39ef7ba66642983334c77eb1cb4309e864252976149de68a/openbabel-3.0.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,575 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/d0/bb/b2a95ca559f04b32cfb4aa26530aec978af4cc4204a3529925590fbb57ed/openbabel-3.0.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,575 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/2f/db/0ab9172ad1be529d614189154566d7e4d6af96a9f3bc71b411d50efc13ba/openbabel-3.0.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,576 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/66/5b/083b11614e9995ad7217b564e6532f85927c85f9052973754ae773b58b39/openbabel-3.0.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,576 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/2e/b7/faffc7a2f4cc2ab05dc99f3e1868b209a95215e052ddd1a0750564517819/openbabel-3.0.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,576 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/3e/12/0c98c5871030100d645e59466399fd7072e60f201a6c4936abae49eaddb7/openbabel-3.0.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,576 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/4e/91/6a64f9a4bb6766f6d7d2e99ad8ccd0a40ba7ff004d594b69b92dd1982675/openbabel-3.1.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,576 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/fc/83/70e05bd654e0e5cca1a22b31a434f3fc5ad9cee5dbef0dce44354fe413f5/openbabel-3.1.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,576 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/83/af/1d8f8d1616b6d3f7ef3977d9848c4950766ccd8ce82858fa4259998f5754/openbabel-3.1.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,576 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/89/26/226b4dd473df6e19c5e8ca8d1af4b85875d59ef571664639935686fcf611/openbabel-3.1.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,576 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/31/05/7a11e23bd398c50c8df643dc0fca3a3faf6f144d0c6abf5b072d9d5103ca/openbabel-3.1.1-cp36-cp36m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,576 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/60/d0/9dc7fcac9664546c5086d665a4df499b219238b610edf687a38d41d3bf5c/openbabel-3.1.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,577 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/35/ac/efa0326e86d44ca32e1e5772dcb6669c0c7e328b5cb6e78560e14dacda10/openbabel-3.1.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,577 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/f9/33/d1cbfde28c463c53742415ab0f8173913f676ef34c5ab2b525b978c8a848/openbabel-3.1.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,577 Skipping link: No binaries permitted for openbabel: https://files.pythonhosted.org/packages/e2/98/17006b394fc7e3aa8b0607e6ab074b768644a217e7be17a13bc58cc31e9d/openbabel-3.1.1-cp38-cp38-win32.whl (from https://pypi.org/simple/openbabel/) 2025-09-08T01:41:13,577 Found link https://files.pythonhosted.org/packages/9d/3f/f08f5d1422d74ed0e1e612870b343bfcc26313bdf9efec9165c3ea4b3ae2/openbabel-3.1.1.1.tar.gz (from https://pypi.org/simple/openbabel/), version: 3.1.1.1 2025-09-08T01:41:13,577 Fetching project page and analyzing links: https://www.piwheels.org/simple/openbabel/ 2025-09-08T01:41:13,578 Getting page https://www.piwheels.org/simple/openbabel/ 2025-09-08T01:41:13,578 Found index url https://www.piwheels.org/simple/ 2025-09-08T01:41:13,665 Fetched page https://www.piwheels.org/simple/openbabel/ as text/html 2025-09-08T01:41:13,666 Skipping link: not a file: https://www.piwheels.org/simple/openbabel/ 2025-09-08T01:41:13,666 Skipping link: not a file: https://pypi.org/simple/openbabel/ 2025-09-08T01:41:13,690 Given no hashes to check 1 links for project 'openbabel': discarding no candidates 2025-09-08T01:41:13,691 Collecting openbabel==1.8.2 2025-09-08T01:41:13,692 Created temporary directory: /tmp/pip-unpack-xm8j4fk3 2025-09-08T01:41:13,828 Downloading openbabel-1.8.2.tar.gz (75 kB) 2025-09-08T01:41:13,875 Added openbabel==1.8.2 from https://files.pythonhosted.org/packages/41/46/5572ceaf814ca86894cc7a0847da5e89fc359a2b0970a7015cb67163d64a/openbabel-1.8.2.tar.gz to build tracker '/tmp/pip-build-tracker-r_x6ol94' 2025-09-08T01:41:13,876 Running setup.py (path:/tmp/pip-wheel-iwvr89eu/openbabel_c59e9197fb1b4c10a543cb2877bf6d29/setup.py) egg_info for package openbabel 2025-09-08T01:41:13,877 Created temporary directory: /tmp/pip-pip-egg-info-6dlby0sr 2025-09-08T01:41:13,877 Preparing metadata (setup.py): started 2025-09-08T01:41:13,878 Running command python setup.py egg_info 2025-09-08T01:41:15,361 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T01:41:15,361 !! 2025-09-08T01:41:15,362 ******************************************************************************** 2025-09-08T01:41:15,362 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T01:41:15,362 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T01:41:15,362 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T01:41:15,362 ******************************************************************************** 2025-09-08T01:41:15,362 !! 2025-09-08T01:41:15,362 self._finalize_license_expression() 2025-09-08T01:41:15,435 running egg_info 2025-09-08T01:41:15,510 creating /tmp/pip-pip-egg-info-6dlby0sr/openbabel.egg-info 2025-09-08T01:41:15,510 writing /tmp/pip-pip-egg-info-6dlby0sr/openbabel.egg-info/PKG-INFO 2025-09-08T01:41:15,511 writing dependency_links to /tmp/pip-pip-egg-info-6dlby0sr/openbabel.egg-info/dependency_links.txt 2025-09-08T01:41:15,512 writing top-level names to /tmp/pip-pip-egg-info-6dlby0sr/openbabel.egg-info/top_level.txt 2025-09-08T01:41:15,512 writing manifest file '/tmp/pip-pip-egg-info-6dlby0sr/openbabel.egg-info/SOURCES.txt' 2025-09-08T01:41:15,588 file openbabel.py (for module openbabel) not found 2025-09-08T01:41:15,781 Warning: package openbabel-2.0 could not be found by pkg-config. 2025-09-08T01:41:15,781 Guessing Open Babel location: 2025-09-08T01:41:15,781 - include_dirs: /usr/local/include/openbabel-2.0 2025-09-08T01:41:15,781 - library_dirs: /usr/local/lib 2025-09-08T01:41:15,781 reading manifest file '/tmp/pip-pip-egg-info-6dlby0sr/openbabel.egg-info/SOURCES.txt' 2025-09-08T01:41:15,783 writing manifest file '/tmp/pip-pip-egg-info-6dlby0sr/openbabel.egg-info/SOURCES.txt' 2025-09-08T01:41:15,898 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T01:41:15,902 Source in /tmp/pip-wheel-iwvr89eu/openbabel_c59e9197fb1b4c10a543cb2877bf6d29 has version 1.8.2, which satisfies requirement openbabel==1.8.2 from https://files.pythonhosted.org/packages/41/46/5572ceaf814ca86894cc7a0847da5e89fc359a2b0970a7015cb67163d64a/openbabel-1.8.2.tar.gz 2025-09-08T01:41:15,903 Removed openbabel==1.8.2 from https://files.pythonhosted.org/packages/41/46/5572ceaf814ca86894cc7a0847da5e89fc359a2b0970a7015cb67163d64a/openbabel-1.8.2.tar.gz from build tracker '/tmp/pip-build-tracker-r_x6ol94' 2025-09-08T01:41:15,906 Created temporary directory: /tmp/pip-unpack-rjqbtk8w 2025-09-08T01:41:15,907 Created temporary directory: /tmp/pip-unpack-yekm2x08 2025-09-08T01:41:15,907 Building wheels for collected packages: openbabel 2025-09-08T01:41:15,908 Created temporary directory: /tmp/pip-wheel-y1tp4w7d 2025-09-08T01:41:15,908 DEPRECATION: Building 'openbabel' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'openbabel'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T01:41:15,909 Building wheel for openbabel (setup.py): started 2025-09-08T01:41:15,910 Destination directory: /tmp/pip-wheel-y1tp4w7d 2025-09-08T01:41:15,910 Running command python setup.py bdist_wheel 2025-09-08T01:41:16,974 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T01:41:16,974 !! 2025-09-08T01:41:16,975 ******************************************************************************** 2025-09-08T01:41:16,975 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T01:41:16,975 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T01:41:16,975 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T01:41:16,975 ******************************************************************************** 2025-09-08T01:41:16,975 !! 2025-09-08T01:41:16,975 self._finalize_license_expression() 2025-09-08T01:41:16,976 running bdist_wheel 2025-09-08T01:41:17,198 running build 2025-09-08T01:41:17,198 running build_ext 2025-09-08T01:41:17,305 Warning: package openbabel-2.0 could not be found by pkg-config. 2025-09-08T01:41:17,305 Guessing Open Babel location: 2025-09-08T01:41:17,305 - include_dirs: /usr/local/include/openbabel-2.0 2025-09-08T01:41:17,305 - library_dirs: /usr/local/lib 2025-09-08T01:41:17,674 building '_openbabel' extension 2025-09-08T01:41:17,674 swigging openbabel-python.i to openbabel-python_wrap.cpp 2025-09-08T01:41:17,674 swig -python -c++ -small -O -templatereduce -naturalvar -I/usr/local/include/openbabel-2.0 -I/usr/include/python3.13 -o openbabel-python_wrap.cpp openbabel-python.i 2025-09-08T01:41:18,180 openbabel-python.i:221: Error: Unable to find 'openbabel/babelconfig.h' 2025-09-08T01:41:18,181 openbabel-python.i:223: Error: Unable to find 'openbabel/data.h' 2025-09-08T01:41:18,181 openbabel-python.i:224: Error: Unable to find 'openbabel/rand.h' 2025-09-08T01:41:18,181 openbabel-python.i:225: Error: Unable to find 'openbabel/obutil.h' 2025-09-08T01:41:18,181 openbabel-python.i:226: Error: Unable to find 'openbabel/math/vector3.h' 2025-09-08T01:41:18,182 openbabel-python.i:228: Error: Unable to find 'openbabel/math/matrix3x3.h' 2025-09-08T01:41:18,182 openbabel-python.i:229: Error: Unable to find 'openbabel/math/transform3d.h' 2025-09-08T01:41:18,182 openbabel-python.i:230: Error: Unable to find 'openbabel/math/spacegroup.h' 2025-09-08T01:41:18,184 openbabel-python.i:234: Error: Unable to find 'openbabel/base.h' 2025-09-08T01:41:18,184 openbabel-python.i:236: Error: Unable to find 'openbabel/generic.h' 2025-09-08T01:41:18,184 openbabel-python.i:237: Error: Unable to find 'openbabel/griddata.h' 2025-09-08T01:41:18,184 openbabel-python.i:239: Error: Unable to find 'openbabel/chains.h' 2025-09-08T01:41:18,185 openbabel-python.i:240: Error: Unable to find 'openbabel/typer.h' 2025-09-08T01:41:18,185 openbabel-python.i:248: Error: Unable to find 'openbabel/plugin.h' 2025-09-08T01:41:18,185 openbabel-python.i:253: Error: Unable to find 'openbabel/oberror.h' 2025-09-08T01:41:18,185 openbabel-python.i:254: Error: Unable to find 'openbabel/format.h' 2025-09-08T01:41:18,185 openbabel-python.i:255: Error: Unable to find 'openbabel/obconversion.h' 2025-09-08T01:41:18,186 openbabel-python.i:256: Error: Unable to find 'openbabel/residue.h' 2025-09-08T01:41:18,186 openbabel-python.i:257: Error: Unable to find 'openbabel/internalcoord.h' 2025-09-08T01:41:18,186 openbabel-python.i:258: Error: Unable to find 'openbabel/atom.h' 2025-09-08T01:41:18,186 openbabel-python.i:259: Error: Unable to find 'openbabel/bond.h' 2025-09-08T01:41:18,187 openbabel-python.i:260: Error: Unable to find 'openbabel/reaction.h' 2025-09-08T01:41:18,187 openbabel-python.i:278: Error: Unable to find 'openbabel/mol.h' 2025-09-08T01:41:18,188 openbabel-python.i:285: Error: Unable to find 'openbabel/ring.h' 2025-09-08T01:41:18,188 openbabel-python.i:286: Error: Unable to find 'openbabel/parsmart.h' 2025-09-08T01:41:18,188 openbabel-python.i:287: Error: Unable to find 'openbabel/alias.h' 2025-09-08T01:41:18,188 openbabel-python.i:288: Error: Unable to find 'openbabel/atomclass.h' 2025-09-08T01:41:18,188 openbabel-python.i:290: Error: Unable to find 'openbabel/fingerprint.h' 2025-09-08T01:41:18,189 openbabel-python.i:292: Error: Unable to find 'openbabel/descriptor.h' 2025-09-08T01:41:18,189 openbabel-python.i:297: Error: Unable to find 'openbabel/forcefield.h' 2025-09-08T01:41:18,189 openbabel-python.i:299: Error: Unable to find 'openbabel/builder.h' 2025-09-08T01:41:18,189 openbabel-python.i:300: Error: Unable to find 'openbabel/op.h' 2025-09-08T01:41:18,190 openbabel-python.i:302: Error: Unable to find 'openbabel/chargemodel.h' 2025-09-08T01:41:18,190 openbabel-python.i:305: Error: Unable to find 'openbabel/phmodel.h' 2025-09-08T01:41:18,190 openbabel-python.i:306: Error: Unable to find 'openbabel/graphsym.h' 2025-09-08T01:41:18,190 openbabel-python.i:307: Error: Unable to find 'openbabel/isomorphism.h' 2025-09-08T01:41:18,191 openbabel-python.i:308: Error: Unable to find 'openbabel/query.h' 2025-09-08T01:41:18,191 openbabel-python.i:309: Error: Unable to find 'openbabel/canon.h' 2025-09-08T01:41:18,191 openbabel-python.i:311: Error: Unable to find 'openbabel/stereo/stereo.h' 2025-09-08T01:41:18,191 openbabel-python.i:314: Error: Unable to find 'openbabel/bitvec.h' 2025-09-08T01:41:18,192 openbabel-python.i:317: Error: Unable to find 'openbabel/rotor.h' 2025-09-08T01:41:18,192 openbabel-python.i:319: Error: Unable to find 'openbabel/rotamer.h' 2025-09-08T01:41:18,192 openbabel-python.i:320: Error: Unable to find 'openbabel/spectrophore.h' 2025-09-08T01:41:18,193 openbabel-python.i:370: Error: Unable to find 'openbabel/obiter.h' 2025-09-08T01:41:18,195 stereo.i:1: Error: Unable to find 'openbabel/stereo/tetranonplanar.h' 2025-09-08T01:41:18,195 stereo.i:2: Error: Unable to find 'openbabel/stereo/tetraplanar.h' 2025-09-08T01:41:18,195 stereo.i:3: Error: Unable to find 'openbabel/stereo/tetrahedral.h' 2025-09-08T01:41:18,195 stereo.i:4: Error: Unable to find 'openbabel/stereo/cistrans.h' 2025-09-08T01:41:18,196 stereo.i:5: Error: Unable to find 'openbabel/stereo/squareplanar.h' 2025-09-08T01:41:18,196 stereo.i:6: Error: Unable to find 'openbabel/stereo/bindings.h' 2025-09-08T01:41:18,200 Error: SWIG failed. Is Open Babel installed? 2025-09-08T01:41:18,200 You may need to manually specify the location of Open Babel include and library directories. For example: 2025-09-08T01:41:18,200 python setup.py build_ext -I/usr/local/include/openbabel-2.0 -L/usr/local/lib 2025-09-08T01:41:18,200 python setup.py install 2025-09-08T01:41:18,349 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T01:41:18,361 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T01:41:18,361 exec(compile('"'"''"'"''"'"' 2025-09-08T01:41:18,361 # This is -- a caller that pip uses to run setup.py 2025-09-08T01:41:18,361 # 2025-09-08T01:41:18,361 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T01:41:18,361 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T01:41:18,361 # - It provides a clear error message when setuptools is not installed. 2025-09-08T01:41:18,361 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T01:41:18,361 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T01:41:18,361 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T01:41:18,361 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T01:41:18,361 import os, sys, tokenize, traceback 2025-09-08T01:41:18,361 2025-09-08T01:41:18,361 try: 2025-09-08T01:41:18,361 import setuptools 2025-09-08T01:41:18,361 except ImportError: 2025-09-08T01:41:18,361 print( 2025-09-08T01:41:18,361 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T01:41:18,361 "the build environment with exception:", 2025-09-08T01:41:18,361 file=sys.stderr, 2025-09-08T01:41:18,361 ) 2025-09-08T01:41:18,361 traceback.print_exc() 2025-09-08T01:41:18,361 sys.exit(1) 2025-09-08T01:41:18,361 2025-09-08T01:41:18,361 __file__ = %r 2025-09-08T01:41:18,361 sys.argv[0] = __file__ 2025-09-08T01:41:18,361 2025-09-08T01:41:18,361 if os.path.exists(__file__): 2025-09-08T01:41:18,361 filename = __file__ 2025-09-08T01:41:18,361 with tokenize.open(__file__) as f: 2025-09-08T01:41:18,361 setup_py_code = f.read() 2025-09-08T01:41:18,361 else: 2025-09-08T01:41:18,361 filename = "" 2025-09-08T01:41:18,361 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T01:41:18,361 2025-09-08T01:41:18,361 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T01:41:18,361 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-iwvr89eu/openbabel_c59e9197fb1b4c10a543cb2877bf6d29/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-y1tp4w7d[/] 2025-09-08T01:41:18,362 [bold magenta]cwd[/]: /tmp/pip-wheel-iwvr89eu/openbabel_c59e9197fb1b4c10a543cb2877bf6d29/ 2025-09-08T01:41:18,362 Building wheel for openbabel (setup.py): finished with status 'error' 2025-09-08T01:41:18,363 ERROR: Failed building wheel for openbabel 2025-09-08T01:41:18,363 Running setup.py clean for openbabel 2025-09-08T01:41:18,364 Running command python setup.py clean 2025-09-08T01:41:19,421 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T01:41:19,421 !! 2025-09-08T01:41:19,422 ******************************************************************************** 2025-09-08T01:41:19,422 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T01:41:19,422 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T01:41:19,422 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T01:41:19,422 ******************************************************************************** 2025-09-08T01:41:19,422 !! 2025-09-08T01:41:19,422 self._finalize_license_expression() 2025-09-08T01:41:19,495 running clean 2025-09-08T01:41:19,567 'build/lib.linux-armv7l-cpython-313' does not exist -- can't clean it 2025-09-08T01:41:19,567 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T01:41:19,567 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T01:41:19,680 Failed to build openbabel 2025-09-08T01:41:19,680 ERROR: Failed to build one or more wheels 2025-09-08T01:41:19,681 Exception information: 2025-09-08T01:41:19,681 Traceback (most recent call last): 2025-09-08T01:41:19,681 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T01:41:19,681 status = _inner_run() 2025-09-08T01:41:19,681 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T01:41:19,681 return self.run(options, args) 2025-09-08T01:41:19,681 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T01:41:19,681 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T01:41:19,681 return func(self, options, args) 2025-09-08T01:41:19,681 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T01:41:19,681 raise CommandError("Failed to build one or more wheels") 2025-09-08T01:41:19,681 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T01:41:19,685 Removed build tracker: '/tmp/pip-build-tracker-r_x6ol94'