2025-09-08T01:47:56,582 Created temporary directory: /tmp/pip-build-tracker-zsrag854
2025-09-08T01:47:56,582 Initialized build tracking at /tmp/pip-build-tracker-zsrag854
2025-09-08T01:47:56,583 Created build tracker: /tmp/pip-build-tracker-zsrag854
2025-09-08T01:47:56,583 Entered build tracker: /tmp/pip-build-tracker-zsrag854
2025-09-08T01:47:56,583 Created temporary directory: /tmp/pip-wheel-qwasc4vu
2025-09-08T01:47:56,586 Created temporary directory: /tmp/pip-ephem-wheel-cache-13flobfe
2025-09-08T01:47:56,645 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T01:47:56,647 2 location(s) to search for versions of plinkio:
2025-09-08T01:47:56,647 * https://pypi.org/simple/plinkio/
2025-09-08T01:47:56,647 * https://www.piwheels.org/simple/plinkio/
2025-09-08T01:47:56,647 Fetching project page and analyzing links: https://pypi.org/simple/plinkio/
2025-09-08T01:47:56,648 Getting page https://pypi.org/simple/plinkio/
2025-09-08T01:47:56,649 Found index url https://pypi.org/simple/
2025-09-08T01:47:56,718 Fetched page https://pypi.org/simple/plinkio/ as application/vnd.pypi.simple.v1+json
2025-09-08T01:47:56,721   Skipping link: No binaries permitted for plinkio: https://files.pythonhosted.org/packages/4e/0f/a1a63384eb4ec320a543a4213f98449ee6e9f72c71a76b7186ef8231c2eb/plinkio-0.9.0-cp27-none-macosx_10_6_intel.whl (from https://pypi.org/simple/plinkio/)
2025-09-08T01:47:56,721   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/05/3c/9392ae2210019eaa7b9f8b26a1daf280af4f6d33bd04df65f3291baa3bdc/plinkio-0.9.0-py2.7-macosx-10.6-intel.egg (from https://pypi.org/simple/plinkio/)
2025-09-08T01:47:56,721   Found link https://files.pythonhosted.org/packages/ed/6d/105c679a55b24811bfceab06a143ec00113ae72c918a2dbc1968993ca5b3/plinkio-0.9.0.tar.gz (from https://pypi.org/simple/plinkio/), version: 0.9.0
2025-09-08T01:47:56,721   Skipping link: No binaries permitted for plinkio: https://files.pythonhosted.org/packages/de/b9/d2d00db61ffc99b2fa0063a7956e989bdaafca8b224886baed289733cc55/plinkio-0.9.1-cp27-none-macosx_10_6_intel.whl (from https://pypi.org/simple/plinkio/)
2025-09-08T01:47:56,721   Found link https://files.pythonhosted.org/packages/98/2b/a8e1f3692466246c0883287bc056dff53c337fc7e2527040bdddbcc3e383/plinkio-0.9.1.tar.gz (from https://pypi.org/simple/plinkio/), version: 0.9.1
2025-09-08T01:47:56,722   Skipping link: No binaries permitted for plinkio: https://files.pythonhosted.org/packages/ab/70/d7d1707f8e5b86e70d3f7afc7fc90a3bd5a3b9cf775f16cb791ac5b4a697/plinkio-0.9.2-cp27-none-macosx_10_6_intel.whl (from https://pypi.org/simple/plinkio/)
2025-09-08T01:47:56,722   Found link https://files.pythonhosted.org/packages/d9/56/840293ef05a31d1bf929567f08bdb0a1db25a9b2b230a4751bf72477dc40/plinkio-0.9.2.tar.gz (from https://pypi.org/simple/plinkio/), version: 0.9.2
2025-09-08T01:47:56,722   Skipping link: No binaries permitted for plinkio: https://files.pythonhosted.org/packages/81/07/28cc94bb4add0fefea567052f23ac330d60f2e7ce1accc02a192dd432542/plinkio-0.9.4-cp27-none-macosx_10_6_intel.whl (from https://pypi.org/simple/plinkio/)
2025-09-08T01:47:56,722   Found link https://files.pythonhosted.org/packages/82/37/066ec8e3f47b27785d116016107c8da5813757bcf9004354672a04461fa7/plinkio-0.9.4.tar.gz (from https://pypi.org/simple/plinkio/), version: 0.9.4
2025-09-08T01:47:56,722   Skipping link: No binaries permitted for plinkio: https://files.pythonhosted.org/packages/b6/be/3837a14aabc552bbdbe0e2620bc8d569f37836f76c81ae3c71a557cca95b/plinkio-0.9.5-cp27-none-macosx_10_6_intel.whl (from https://pypi.org/simple/plinkio/)
2025-09-08T01:47:56,723   Found link https://files.pythonhosted.org/packages/f7/21/b8316aef6cea439b33d28f59e36982f235b3fb537aa3ba048ef8d211a2b8/plinkio-0.9.5.tar.gz (from https://pypi.org/simple/plinkio/), version: 0.9.5
2025-09-08T01:47:56,723   Found link https://files.pythonhosted.org/packages/46/15/2895eba8f9172f9a81c9632fe1e36521cb5d11a385e82ed4d2d62904a82b/plinkio-0.9.6.linux-x86_64.tar.gz (from https://pypi.org/simple/plinkio/), version: 0.9.6.linux-x86_64
2025-09-08T01:47:56,723   Found link https://files.pythonhosted.org/packages/9c/d0/1634f59f2ba67dd0eda16026a8e1958059105d7fea1dfa16d251b9c9dc73/plinkio-0.9.6.tar.gz (from https://pypi.org/simple/plinkio/), version: 0.9.6
2025-09-08T01:47:56,723   Skipping link: No binaries permitted for plinkio: https://files.pythonhosted.org/packages/66/ae/e9130ede9dc16145633bcfd2ec4f728ceb5bb3a49786083fe31cb71637af/plinkio-0.9.7-cp27-cp27m-macosx_10_10_x86_64.whl (from https://pypi.org/simple/plinkio/)
2025-09-08T01:47:56,724   Found link https://files.pythonhosted.org/packages/4b/6e/e4cc41556d7e21c1e4ab8560b3eff8b14634570f6203c30ed46b66eecd5a/plinkio-0.9.7.tar.gz (from https://pypi.org/simple/plinkio/), version: 0.9.7
2025-09-08T01:47:56,724   Skipping link: No binaries permitted for plinkio: https://files.pythonhosted.org/packages/52/c6/6c0e170e3f0126eb9c61193169392d8beefe27c850248cc9b427252deb3b/plinkio-0.9.8-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/plinkio/)
2025-09-08T01:47:56,724   Found link https://files.pythonhosted.org/packages/0b/b3/f940e8f603b8a0fa09b4cce185e99a203234e16a56877efd7bd2ec943a36/plinkio-0.9.8.tar.gz (from https://pypi.org/simple/plinkio/), version: 0.9.8
2025-09-08T01:47:56,724 Fetching project page and analyzing links: https://www.piwheels.org/simple/plinkio/
2025-09-08T01:47:56,725 Getting page https://www.piwheels.org/simple/plinkio/
2025-09-08T01:47:56,725 Found index url https://www.piwheels.org/simple/
2025-09-08T01:47:56,826 Fetched page https://www.piwheels.org/simple/plinkio/ as text/html
2025-09-08T01:47:56,833   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.8-cp35-cp35m-linux_armv6l.whl#sha256=6eff2ffe96972fd08ac85d67c7eab50b123a4730862be120779c1bb1c09191a8 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,833   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.8-cp35-cp35m-linux_armv7l.whl#sha256=6eff2ffe96972fd08ac85d67c7eab50b123a4730862be120779c1bb1c09191a8 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,833   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=bdc8f8ca2c4c5f5de57fdcf2633387d9f8bf12d911e2ec069f503ecf4f487e20 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,833   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=bdc8f8ca2c4c5f5de57fdcf2633387d9f8bf12d911e2ec069f503ecf4f487e20 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,833   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.8-cp311-cp311-linux_armv6l.whl#sha256=98ab0aecbe362a0ce7f5b0993b7a58b3d828033c940309cb8bd54c8ea34a4dbe (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,833   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.8-cp311-cp311-linux_armv7l.whl#sha256=98ab0aecbe362a0ce7f5b0993b7a58b3d828033c940309cb8bd54c8ea34a4dbe (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,833   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=229b2e4a8560ead59d8fbcaf0fb56e578ea32d09d2130061faea73c118ad66e5 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,834   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=229b2e4a8560ead59d8fbcaf0fb56e578ea32d09d2130061faea73c118ad66e5 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,834   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp35-cp35m-linux_armv7l.whl#sha256=299d4f903ffa0efe399e664d6941400a67a0ef82c5296456eb95c10e7baec7e9 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,834   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp35-cp35m-linux_armv6l.whl#sha256=299d4f903ffa0efe399e664d6941400a67a0ef82c5296456eb95c10e7baec7e9 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,834   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=8be5da241c5fd60fb3f46cae323eb2fb47275ea0e7384d944acd7bdca4b9283b (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,834   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=8be5da241c5fd60fb3f46cae323eb2fb47275ea0e7384d944acd7bdca4b9283b (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,834   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=25a3940f83db636653e97801758975c789bcdf2f9142fa18876e703195cf7be6 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,834   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=25a3940f83db636653e97801758975c789bcdf2f9142fa18876e703195cf7be6 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,835   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp34-cp34m-linux_armv6l.whl#sha256=5297e15b99e9a91006c5a481f89e4cd4279ac5644aea688c84b26a3a0427743c (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,835   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp34-cp34m-linux_armv7l.whl#sha256=5297e15b99e9a91006c5a481f89e4cd4279ac5644aea688c84b26a3a0427743c (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,835   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp311-cp311-linux_armv6l.whl#sha256=8c2cc13166f91bc6cf323623b4fcb78c5a434bc1ec949457fad79e37325bfde7 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,835   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.7-cp311-cp311-linux_armv7l.whl#sha256=8c2cc13166f91bc6cf323623b4fcb78c5a434bc1ec949457fad79e37325bfde7 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,835   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=4647cce41d155436f0f1ddbcf843de90c54ab6d4d106c1c74cc1e69fe7e7a9c2 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,835   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=4647cce41d155436f0f1ddbcf843de90c54ab6d4d106c1c74cc1e69fe7e7a9c2 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,835   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp34-cp34m-linux_armv7l.whl#sha256=01003749fa678c32edc3b33ddfabc9b2d77e37e76e026c059514693fa2310e36 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,835   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp34-cp34m-linux_armv6l.whl#sha256=01003749fa678c32edc3b33ddfabc9b2d77e37e76e026c059514693fa2310e36 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,836   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp35-cp35m-linux_armv6l.whl#sha256=a3e76b6fb6a2e2330f3b691698dc58eec88d074dd87ea5fb5b9fad408517f517 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,836   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp35-cp35m-linux_armv7l.whl#sha256=a3e76b6fb6a2e2330f3b691698dc58eec88d074dd87ea5fb5b9fad408517f517 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,836   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp311-cp311-linux_armv6l.whl#sha256=c2f7fac4b72b56568a39761b44130f92ea783139a79c9fd0fbb9a9cbf9e40d5c (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,836   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp311-cp311-linux_armv7l.whl#sha256=c2f7fac4b72b56568a39761b44130f92ea783139a79c9fd0fbb9a9cbf9e40d5c (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,836   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=59f6a388351f8e423ccecceed0fadfcd0f7181710b722999d82ef5bba3e33305 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,836   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=59f6a388351f8e423ccecceed0fadfcd0f7181710b722999d82ef5bba3e33305 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,836   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=6d217bf73960899a05d55b412041e37cc010e4913a62041bf34d6f1615e0ad15 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,836   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=6d217bf73960899a05d55b412041e37cc010e4913a62041bf34d6f1615e0ad15 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,837   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp34-cp34m-linux_armv7l.whl#sha256=32feb58776b792b2bed83523c06ceeb1e7e782a48a674bf80653ae569aa99020 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,837   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp34-cp34m-linux_armv6l.whl#sha256=32feb58776b792b2bed83523c06ceeb1e7e782a48a674bf80653ae569aa99020 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,837   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp35-cp35m-linux_armv6l.whl#sha256=47c70d63a92a491b7dc09884063ad6d83482c854b60cf6c32d4cd2f78a3459dc (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,837   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp35-cp35m-linux_armv7l.whl#sha256=47c70d63a92a491b7dc09884063ad6d83482c854b60cf6c32d4cd2f78a3459dc (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,837   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp311-cp311-linux_armv6l.whl#sha256=38b458ebd31d398cc6871e3ced2480cbe2f39e17dbef2813af111f1107a572b1 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,837   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp311-cp311-linux_armv7l.whl#sha256=38b458ebd31d398cc6871e3ced2480cbe2f39e17dbef2813af111f1107a572b1 (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,837   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=c228a4b03da55350737fdd11bd78bfcb737517ad362574394cec6772eb81c31b (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,837   Skipping link: No binaries permitted for plinkio: https://archive1.piwheels.org/simple/plinkio/plinkio-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=c228a4b03da55350737fdd11bd78bfcb737517ad362574394cec6772eb81c31b (from https://www.piwheels.org/simple/plinkio/)
2025-09-08T01:47:56,838 Skipping link: not a file: https://www.piwheels.org/simple/plinkio/
2025-09-08T01:47:56,838 Skipping link: not a file: https://pypi.org/simple/plinkio/
2025-09-08T01:47:56,863 Given no hashes to check 1 links for project 'plinkio': discarding no candidates
2025-09-08T01:47:56,864 Collecting plinkio==0.9.6
2025-09-08T01:47:56,865   Created temporary directory: /tmp/pip-unpack-psc_ceah
2025-09-08T01:47:57,325   Downloading plinkio-0.9.6.tar.gz (32 kB)
2025-09-08T01:47:57,369   Added plinkio==0.9.6 from https://files.pythonhosted.org/packages/9c/d0/1634f59f2ba67dd0eda16026a8e1958059105d7fea1dfa16d251b9c9dc73/plinkio-0.9.6.tar.gz to build tracker '/tmp/pip-build-tracker-zsrag854'
2025-09-08T01:47:57,370   Running setup.py (path:/tmp/pip-wheel-qwasc4vu/plinkio_bc5549ce78f345b9b3c14e33bd4b8804/setup.py) egg_info for package plinkio
2025-09-08T01:47:57,370   Created temporary directory: /tmp/pip-pip-egg-info-976hjsrs
2025-09-08T01:47:57,370   Preparing metadata (setup.py): started
2025-09-08T01:47:57,371   Running command python setup.py egg_info
2025-09-08T01:47:58,434   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T01:47:58,434   !!

2025-09-08T01:47:58,434           ********************************************************************************
2025-09-08T01:47:58,434           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T01:47:58,435           License :: OSI Approved :: BSD License

2025-09-08T01:47:58,435           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T01:47:58,435           ********************************************************************************

2025-09-08T01:47:58,435   !!
2025-09-08T01:47:58,435     self._finalize_license_expression()
2025-09-08T01:47:58,507   running egg_info
2025-09-08T01:47:58,582   creating /tmp/pip-pip-egg-info-976hjsrs/plinkio.egg-info
2025-09-08T01:47:58,582   writing /tmp/pip-pip-egg-info-976hjsrs/plinkio.egg-info/PKG-INFO
2025-09-08T01:47:58,583   writing dependency_links to /tmp/pip-pip-egg-info-976hjsrs/plinkio.egg-info/dependency_links.txt
2025-09-08T01:47:58,584   writing top-level names to /tmp/pip-pip-egg-info-976hjsrs/plinkio.egg-info/top_level.txt
2025-09-08T01:47:58,585   writing manifest file '/tmp/pip-pip-egg-info-976hjsrs/plinkio.egg-info/SOURCES.txt'
2025-09-08T01:47:58,877   reading manifest file '/tmp/pip-pip-egg-info-976hjsrs/plinkio.egg-info/SOURCES.txt'
2025-09-08T01:47:58,878   reading manifest template 'MANIFEST.in'
2025-09-08T01:47:58,882   writing manifest file '/tmp/pip-pip-egg-info-976hjsrs/plinkio.egg-info/SOURCES.txt'
2025-09-08T01:47:58,995   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T01:47:59,000   Source in /tmp/pip-wheel-qwasc4vu/plinkio_bc5549ce78f345b9b3c14e33bd4b8804 has version 0.9.6, which satisfies requirement plinkio==0.9.6 from https://files.pythonhosted.org/packages/9c/d0/1634f59f2ba67dd0eda16026a8e1958059105d7fea1dfa16d251b9c9dc73/plinkio-0.9.6.tar.gz
2025-09-08T01:47:59,000   Removed plinkio==0.9.6 from https://files.pythonhosted.org/packages/9c/d0/1634f59f2ba67dd0eda16026a8e1958059105d7fea1dfa16d251b9c9dc73/plinkio-0.9.6.tar.gz from build tracker '/tmp/pip-build-tracker-zsrag854'
2025-09-08T01:47:59,003 Created temporary directory: /tmp/pip-unpack-9r3l343o
2025-09-08T01:47:59,004 Created temporary directory: /tmp/pip-unpack-neh002bm
2025-09-08T01:47:59,004 Building wheels for collected packages: plinkio
2025-09-08T01:47:59,005   Created temporary directory: /tmp/pip-wheel-4f_58lid
2025-09-08T01:47:59,005   DEPRECATION: Building 'plinkio' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'plinkio'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T01:47:59,007   Building wheel for plinkio (setup.py): started
2025-09-08T01:47:59,007   Destination directory: /tmp/pip-wheel-4f_58lid
2025-09-08T01:47:59,007   Running command python setup.py bdist_wheel
2025-09-08T01:48:00,114   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T01:48:00,114   !!

2025-09-08T01:48:00,114           ********************************************************************************
2025-09-08T01:48:00,114           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T01:48:00,114           License :: OSI Approved :: BSD License

2025-09-08T01:48:00,115           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T01:48:00,115           ********************************************************************************

2025-09-08T01:48:00,115   !!
2025-09-08T01:48:00,115     self._finalize_license_expression()
2025-09-08T01:48:00,115   running bdist_wheel
2025-09-08T01:48:00,484   running build
2025-09-08T01:48:00,484   running build_py
2025-09-08T01:48:00,561   creating build/lib.linux-armv7l-cpython-313/plinkio
2025-09-08T01:48:00,561   copying py-plinkio/plinkio/plinkfile.py -> build/lib.linux-armv7l-cpython-313/plinkio
2025-09-08T01:48:00,562   copying py-plinkio/plinkio/__init__.py -> build/lib.linux-armv7l-cpython-313/plinkio
2025-09-08T01:48:00,563   running build_ext
2025-09-08T01:48:00,896   building 'plinkio.cplinkio' extension
2025-09-08T01:48:00,898   creating build/temp.linux-armv7l-cpython-313/libs/libcsv/src
2025-09-08T01:48:00,899   creating build/temp.linux-armv7l-cpython-313/py-plinkio
2025-09-08T01:48:00,899   creating build/temp.linux-armv7l-cpython-313/src
2025-09-08T01:48:00,900   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc -Ilibs/libcsv/inc -Ipy-plinkio -I/usr/include/python3.13 -c libs/libcsv/src/libcsv.c -o build/temp.linux-armv7l-cpython-313/libs/libcsv/src/libcsv.o
2025-09-08T01:48:00,993   libs/libcsv/src/libcsv.c: In function ‘csv_fini’:
2025-09-08T01:48:00,993   libs/libcsv/src/libcsv.c:162:7: warning: variable ‘pstate’ set but not used [-Wunused-but-set-variable]
2025-09-08T01:48:00,993     162 |   int pstate = p->pstate;
2025-09-08T01:48:00,993         |       ^~~~~~
2025-09-08T01:48:01,626   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc -Ilibs/libcsv/inc -Ipy-plinkio -I/usr/include/python3.13 -c py-plinkio/cplinkio.c -o build/temp.linux-armv7l-cpython-313/py-plinkio/cplinkio.o
2025-09-08T01:48:01,995   py-plinkio/cplinkio.c: In function ‘plinkio_write_row’:
2025-09-08T01:48:01,996   py-plinkio/cplinkio.c:501:36: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:01,996     501 |     if( PyObject_Size( genotypes ) != c_plink_file->row_length )
2025-09-08T01:48:01,996         |                                    ^~
2025-09-08T01:48:01,996   py-plinkio/cplinkio.c:512:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:01,996     512 |     for(i = 0; i < c_plink_file->row_length; i++)
2025-09-08T01:48:01,996         |                  ^
2025-09-08T01:48:01,998   py-plinkio/cplinkio.c: In function ‘plinkio_get_loci’:
2025-09-08T01:48:01,998   py-plinkio/cplinkio.c:637:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:01,998     637 |     for(i = 0; i < pio_num_loci( &c_plink_file->file ); i++)
2025-09-08T01:48:01,998         |                  ^
2025-09-08T01:48:01,999   py-plinkio/cplinkio.c: In function ‘plinkio_get_samples’:
2025-09-08T01:48:02,000   py-plinkio/cplinkio.c:701:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:02,000     701 |     for(i = 0; i < pio_num_samples( &c_plink_file->file ); i++)
2025-09-08T01:48:02,000         |                  ^
2025-09-08T01:48:02,019   py-plinkio/cplinkio.c: In function ‘plinkio_create’:
2025-09-08T01:48:02,019   py-plinkio/cplinkio.c:350:9: warning: pointer ‘samples’ may be used after ‘free’ [-Wuse-after-free]
2025-09-08T01:48:02,019     350 |         free( samples );
2025-09-08T01:48:02,019         |         ^~~~~~~~~~~~~~~
2025-09-08T01:48:02,019   py-plinkio/cplinkio.c:345:5: note: call to ‘free’ here
2025-09-08T01:48:02,019     345 |     free( samples );
2025-09-08T01:48:02,019         |     ^~~~~~~~~~~~~~~
2025-09-08T01:48:02,617   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc -Ilibs/libcsv/inc -Ipy-plinkio -I/usr/include/python3.13 -c py-plinkio/snparray.c -o build/temp.linux-armv7l-cpython-313/py-plinkio/snparray.o
2025-09-08T01:48:02,967   py-plinkio/snparray.c: In function ‘snparray_str’:
2025-09-08T01:48:02,968   py-plinkio/snparray.c:43:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:02,968      43 |     for(i = 0; i < snp_array->length; i++)
2025-09-08T01:48:02,968         |                  ^
2025-09-08T01:48:02,968   py-plinkio/snparray.c: In function ‘snparray_allele_counts’:
2025-09-08T01:48:02,968   py-plinkio/snparray.c:77:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:02,968      77 |     for(i = 0; i < snp_array->length; i++)
2025-09-08T01:48:02,968         |                  ^
2025-09-08T01:48:02,969   py-plinkio/snparray.c: In function ‘snparray_getitem’:
2025-09-08T01:48:02,969   py-plinkio/snparray.c:113:15: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:02,969     113 |     if( index >= snp_array->length )
2025-09-08T01:48:02,969         |               ^~
2025-09-08T01:48:02,969   py-plinkio/snparray.c: In function ‘snparray_contains’:
2025-09-08T01:48:02,969   py-plinkio/snparray.c:136:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:02,970     136 |     for(i = 0; i < snp_array->length; i++)
2025-09-08T01:48:02,970         |                  ^
2025-09-08T01:48:02,975   In file included from py-plinkio/snparray.c:3:
2025-09-08T01:48:02,975   py-plinkio/snparray.h: At top level:
2025-09-08T01:48:02,975   py-plinkio/snparray.h:133:21: warning: ‘py_snp_array_prototype’ defined but not used [-Wunused-variable]
2025-09-08T01:48:02,975     133 | static PyTypeObject py_snp_array_prototype =
2025-09-08T01:48:02,976         |                     ^~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:48:03,129   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc -Ilibs/libcsv/inc -Ipy-plinkio -I/usr/include/python3.13 -c src/bed.c -o build/temp.linux-armv7l-cpython-313/src/bed.o
2025-09-08T01:48:03,253   src/bed.c: In function ‘pack_snps’:
2025-09-08T01:48:03,253   src/bed.c:132:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:03,253     132 |     for(i = 0; i < num_cols; i++)
2025-09-08T01:48:03,253         |                  ^
2025-09-08T01:48:03,254   src/bed.c: In function ‘transpose_rows’:
2025-09-08T01:48:03,254   src/bed.c:156:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:03,254     156 |     for(j = 0; j < num_cols; j++)
2025-09-08T01:48:03,254         |                  ^
2025-09-08T01:48:03,254   src/bed.c:159:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-09-08T01:48:03,254     159 |         for(i = 0; i < num_rows; i++)
2025-09-08T01:48:03,254         |                      ^
2025-09-08T01:48:03,255   src/bed.c: In function ‘transpose_file’:
2025-09-08T01:48:03,255   src/bed.c:216:89: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2025-09-08T01:48:03,255     216 |     if( fwrite( byte_header, sizeof( unsigned char ), byte_header_length, output_file ) != byte_header_length )
2025-09-08T01:48:03,255         |                                                                                         ^~
2025-09-08T01:48:03,547   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc -Ilibs/libcsv/inc -Ipy-plinkio -I/usr/include/python3.13 -c src/bed_header.c -o build/temp.linux-armv7l-cpython-313/src/bed_header.o
2025-09-08T01:48:03,761   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc -Ilibs/libcsv/inc -Ipy-plinkio -I/usr/include/python3.13 -c src/bim.c -o build/temp.linux-armv7l-cpython-313/src/bim.o
2025-09-08T01:48:04,004   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc -Ilibs/libcsv/inc -Ipy-plinkio -I/usr/include/python3.13 -c src/bim_parse.c -o build/temp.linux-armv7l-cpython-313/src/bim_parse.o
2025-09-08T01:48:04,104   src/bim_parse.c: In function ‘parse_loci’:
2025-09-08T01:48:04,105   src/bim_parse.c:277:54: error: passing argument 4 of ‘csv_parse’ from incompatible pointer type [-Wincompatible-pointer-types]
2025-09-08T01:48:04,105     277 |         csv_parse( &parser, read_buffer, bytes_read, &new_field, &new_row, (void *) &state );
2025-09-08T01:48:04,105         |                                                      ^~~~~~~~~~
2025-09-08T01:48:04,105         |                                                      |
2025-09-08T01:48:04,105         |                                                      void (*)(void *, long unsigned int,  void *)
2025-09-08T01:48:04,106   In file included from src/bim_parse.c:12:
2025-09-08T01:48:04,106   libs/libcsv/inc/csv.h:65:74: note: expected ‘void (*)(void *, size_t,  void *)’ {aka ‘void (*)(void *, unsigned int,  void *)’} but argument is of type ‘void (*)(void *, long unsigned int,  void *)’
2025-09-08T01:48:04,106      65 | size_t csv_parse(struct csv_parser *p, const void *s, size_t len, void (*cb1)(void *, size_t, void *), void (*cb2)(int, void *), void *data);
2025-09-08T01:48:04,106         |                                                                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:48:04,106   src/bim_parse.c:280:24: error: passing argument 2 of ‘csv_fini’ from incompatible pointer type [-Wincompatible-pointer-types]
2025-09-08T01:48:04,107     280 |     csv_fini( &parser, new_field, new_row, (void *) &state );
2025-09-08T01:48:04,107         |                        ^~~~~~~~~
2025-09-08T01:48:04,107         |                        |
2025-09-08T01:48:04,107         |                        void (*)(void *, long unsigned int,  void *)
2025-09-08T01:48:04,107   libs/libcsv/inc/csv.h:61:43: note: expected ‘void (*)(void *, size_t,  void *)’ {aka ‘void (*)(void *, unsigned int,  void *)’} but argument is of type ‘void (*)(void *, long unsigned int,  void *)’
2025-09-08T01:48:04,107      61 | int csv_fini(struct csv_parser *p, void (*cb1)(void *, size_t, void *), void (*cb2)(int, void *), void *data);
2025-09-08T01:48:04,107         |                                    ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:48:04,115   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2025-09-08T01:48:04,260   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T01:48:04,271   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T01:48:04,271   exec(compile('"'"''"'"''"'"'
2025-09-08T01:48:04,271   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T01:48:04,271   #
2025-09-08T01:48:04,271   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T01:48:04,271   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T01:48:04,271   # - It provides a clear error message when setuptools is not installed.
2025-09-08T01:48:04,271   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T01:48:04,271   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T01:48:04,271   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T01:48:04,271   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T01:48:04,271   import os, sys, tokenize, traceback
2025-09-08T01:48:04,271   
2025-09-08T01:48:04,271   try:
2025-09-08T01:48:04,271       import setuptools
2025-09-08T01:48:04,271   except ImportError:
2025-09-08T01:48:04,271       print(
2025-09-08T01:48:04,271           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T01:48:04,271           "the build environment with exception:",
2025-09-08T01:48:04,271           file=sys.stderr,
2025-09-08T01:48:04,271       )
2025-09-08T01:48:04,271       traceback.print_exc()
2025-09-08T01:48:04,271       sys.exit(1)
2025-09-08T01:48:04,271   
2025-09-08T01:48:04,271   __file__ = %r
2025-09-08T01:48:04,271   sys.argv[0] = __file__
2025-09-08T01:48:04,271   
2025-09-08T01:48:04,271   if os.path.exists(__file__):
2025-09-08T01:48:04,271       filename = __file__
2025-09-08T01:48:04,271       with tokenize.open(__file__) as f:
2025-09-08T01:48:04,271           setup_py_code = f.read()
2025-09-08T01:48:04,271   else:
2025-09-08T01:48:04,271       filename = "<auto-generated setuptools caller>"
2025-09-08T01:48:04,271       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T01:48:04,271   
2025-09-08T01:48:04,271   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T01:48:04,271   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-qwasc4vu/plinkio_bc5549ce78f345b9b3c14e33bd4b8804/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-4f_58lid[/]
2025-09-08T01:48:04,272   [bold magenta]cwd[/]: /tmp/pip-wheel-qwasc4vu/plinkio_bc5549ce78f345b9b3c14e33bd4b8804/
2025-09-08T01:48:04,272   Building wheel for plinkio (setup.py): finished with status 'error'
2025-09-08T01:48:04,272   ERROR: Failed building wheel for plinkio
2025-09-08T01:48:04,273   Running setup.py clean for plinkio
2025-09-08T01:48:04,274   Running command python setup.py clean
2025-09-08T01:48:05,357   /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-08T01:48:05,357   !!

2025-09-08T01:48:05,358           ********************************************************************************
2025-09-08T01:48:05,358           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-08T01:48:05,358           License :: OSI Approved :: BSD License

2025-09-08T01:48:05,358           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-08T01:48:05,358           ********************************************************************************

2025-09-08T01:48:05,358   !!
2025-09-08T01:48:05,359     self._finalize_license_expression()
2025-09-08T01:48:05,432   running clean
2025-09-08T01:48:05,582   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T01:48:05,582   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2025-09-08T01:48:05,583   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T01:48:05,583   'build/scripts-3.13' does not exist -- can't clean it
2025-09-08T01:48:05,583   removing 'build'
2025-09-08T01:48:05,697 Failed to build plinkio
2025-09-08T01:48:05,697 ERROR: Failed to build one or more wheels
2025-09-08T01:48:05,698 Exception information:
2025-09-08T01:48:05,698 Traceback (most recent call last):
2025-09-08T01:48:05,698   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T01:48:05,698     status = _inner_run()
2025-09-08T01:48:05,698   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T01:48:05,698     return self.run(options, args)
2025-09-08T01:48:05,698            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T01:48:05,698   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T01:48:05,698     return func(self, options, args)
2025-09-08T01:48:05,698   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T01:48:05,698     raise CommandError("Failed to build one or more wheels")
2025-09-08T01:48:05,698 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T01:48:05,703 Removed build tracker: '/tmp/pip-build-tracker-zsrag854'