2025-09-08T01:51:37,860 Created temporary directory: /tmp/pip-build-tracker-lb8zoufx
2025-09-08T01:51:37,861 Initialized build tracking at /tmp/pip-build-tracker-lb8zoufx
2025-09-08T01:51:37,861 Created build tracker: /tmp/pip-build-tracker-lb8zoufx
2025-09-08T01:51:37,861 Entered build tracker: /tmp/pip-build-tracker-lb8zoufx
2025-09-08T01:51:37,861 Created temporary directory: /tmp/pip-wheel-s2j82x9k
2025-09-08T01:51:37,864 Created temporary directory: /tmp/pip-ephem-wheel-cache-xj2r9i72
2025-09-08T01:51:37,922 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T01:51:37,924 2 location(s) to search for versions of ponytools:
2025-09-08T01:51:37,924 * https://pypi.org/simple/ponytools/
2025-09-08T01:51:37,924 * https://www.piwheels.org/simple/ponytools/
2025-09-08T01:51:37,925 Fetching project page and analyzing links: https://pypi.org/simple/ponytools/
2025-09-08T01:51:37,925 Getting page https://pypi.org/simple/ponytools/
2025-09-08T01:51:37,926 Found index url https://pypi.org/simple/
2025-09-08T01:51:38,073 Fetched page https://pypi.org/simple/ponytools/ as application/vnd.pypi.simple.v1+json
2025-09-08T01:51:38,075   Found link https://files.pythonhosted.org/packages/31/f4/426f093ad50b9e82b4f8d7cac3e2c1e8441fa02df47d78dad2a6836ead56/ponytools-0.1.0.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.0
2025-09-08T01:51:38,075   Found link https://files.pythonhosted.org/packages/ff/38/c356834b171815620ac126d229c2a9a286268284f66748db3275ee6df04e/ponytools-0.1.1.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.1
2025-09-08T01:51:38,075   Found link https://files.pythonhosted.org/packages/52/0d/fe9c27dc94118cdc850f16c61360de97913154c502352f38aa0063f12226/ponytools-0.1.3.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.3
2025-09-08T01:51:38,076   Found link https://files.pythonhosted.org/packages/d2/18/8dbbe7b98ec4ce363ce7d74e3282750e901b134bdff24dd0987b01cd7d26/ponytools-0.1.4.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.4
2025-09-08T01:51:38,076   Found link https://files.pythonhosted.org/packages/17/3a/05917d1df9abd8a117b6b72282a150b124e8355650d3f14c9d18ded59de8/ponytools-0.1.5.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.5
2025-09-08T01:51:38,076   Found link https://files.pythonhosted.org/packages/d7/b4/5c96cf158def6055188e868b96c609e9291f940e59443d8a37f5f9c27eac/ponytools-0.1.6.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.6
2025-09-08T01:51:38,077   Found link https://files.pythonhosted.org/packages/de/76/7c3348ce212b503bffb2ba490866f4fbf1419bbda4357bbecdb71efd6c1a/ponytools-0.1.7.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.7
2025-09-08T01:51:38,077   Found link https://files.pythonhosted.org/packages/f3/b8/2b9e16c9e4ee5b969ed866705aa2a8995a5d5bf479f9e384ac06e1923f49/ponytools-0.1.9.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.9
2025-09-08T01:51:38,077   Found link https://files.pythonhosted.org/packages/bc/c6/7c689b0c8577cd0509bfd6b9dc7ed4ac96292d10832cec47a197e7bc1a4b/ponytools-0.1.11.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.11
2025-09-08T01:51:38,077   Found link https://files.pythonhosted.org/packages/a2/90/2ecdb3bbbfec52d49db5379d4687a49c7672f0943589d2b8c3c0cd81cbfb/ponytools-0.2.1.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.2.1
2025-09-08T01:51:38,078   Found link https://files.pythonhosted.org/packages/15/4a/55f158511127674e130d2c9bef730dad09e4bde01d16c9a29bab51f2c7a7/ponytools-0.2.3.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.2.3
2025-09-08T01:51:38,078 Fetching project page and analyzing links: https://www.piwheels.org/simple/ponytools/
2025-09-08T01:51:38,078 Getting page https://www.piwheels.org/simple/ponytools/
2025-09-08T01:51:38,079 Found index url https://www.piwheels.org/simple/
2025-09-08T01:51:38,198 Fetched page https://www.piwheels.org/simple/ponytools/ as text/html
2025-09-08T01:51:38,201   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.2.3-py3-none-any.whl#sha256=9ed65a1a090935eda37a5aa68df7e6e9f41d230423ed0be6bcdc9f9dfd422cfb (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,201   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.2.1-py3-none-any.whl#sha256=2e92dafb26660e53654e934d33325b3d580405d3f91d8e3dfab558621b1d3c45 (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,201   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.1.11-py3-none-any.whl#sha256=e3473f89e4c8869a9044fc00262d6c769aa3b10309b9eb93c075f30a4c59ce07 (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,201   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.1.9-py3-none-any.whl#sha256=f710c0a61d115e0640daefeba031d574d51e2afbc58c246927419762630a7a23 (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,201   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.1.7-py3-none-any.whl#sha256=a1d3656601027a5fcb82dbcc732b938ac63a5e3969d30e28e2f73bebf40a51c1 (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,202   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.1.6-py3-none-any.whl#sha256=8e1ecef64d2969dfabc9f4ec2c095d3cd75c8603a996eb13825b197a88ec2a97 (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,202   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.1.5-py3-none-any.whl#sha256=2430b04aa0c1649d9cbc7286343b43f8f73b822d347b103290314e760da8f6ab (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,202   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.1.4-py3-none-any.whl#sha256=1583eb9e0282fe21d7da1c50d7443de0b0d9071c0ce16ad2a3ead5363ddd906c (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,202   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.1.3-py3-none-any.whl#sha256=f70993117d5cee007996503462e72e9c49d2b731ac58ae67b57de81d9b0bc3fb (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,202   Skipping link: No binaries permitted for ponytools: https://archive1.piwheels.org/simple/ponytools/ponytools-0.1.1-py3-none-any.whl#sha256=c183c5a786d0cda5e4638df3ee53f27781fce46dcbd2be471118af3d5a1e3077 (from https://www.piwheels.org/simple/ponytools/)
2025-09-08T01:51:38,202 Skipping link: not a file: https://www.piwheels.org/simple/ponytools/
2025-09-08T01:51:38,202 Skipping link: not a file: https://pypi.org/simple/ponytools/
2025-09-08T01:51:38,229 Given no hashes to check 1 links for project 'ponytools': discarding no candidates
2025-09-08T01:51:38,230 Collecting ponytools==0.1.0
2025-09-08T01:51:38,231   Created temporary directory: /tmp/pip-unpack-l8yuqa8e
2025-09-08T01:51:38,373   Downloading ponytools-0.1.0.tar.gz (16 kB)
2025-09-08T01:51:38,402   Added ponytools==0.1.0 from https://files.pythonhosted.org/packages/31/f4/426f093ad50b9e82b4f8d7cac3e2c1e8441fa02df47d78dad2a6836ead56/ponytools-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-lb8zoufx'
2025-09-08T01:51:38,403   Running setup.py (path:/tmp/pip-wheel-s2j82x9k/ponytools_09e02f9b5ed74df5b81cc9b76c3b4409/setup.py) egg_info for package ponytools
2025-09-08T01:51:38,403   Created temporary directory: /tmp/pip-pip-egg-info-zx4f6o4_
2025-09-08T01:51:38,404   Preparing metadata (setup.py): started
2025-09-08T01:51:38,405   Running command python setup.py egg_info
2025-09-08T01:51:40,272   running egg_info
2025-09-08T01:51:40,347   creating /tmp/pip-pip-egg-info-zx4f6o4_/ponytools.egg-info
2025-09-08T01:51:40,348   writing /tmp/pip-pip-egg-info-zx4f6o4_/ponytools.egg-info/PKG-INFO
2025-09-08T01:51:40,349   writing dependency_links to /tmp/pip-pip-egg-info-zx4f6o4_/ponytools.egg-info/dependency_links.txt
2025-09-08T01:51:40,349   writing requirements to /tmp/pip-pip-egg-info-zx4f6o4_/ponytools.egg-info/requires.txt
2025-09-08T01:51:40,350   writing top-level names to /tmp/pip-pip-egg-info-zx4f6o4_/ponytools.egg-info/top_level.txt
2025-09-08T01:51:40,350   writing manifest file '/tmp/pip-pip-egg-info-zx4f6o4_/ponytools.egg-info/SOURCES.txt'
2025-09-08T01:51:40,648   reading manifest file '/tmp/pip-pip-egg-info-zx4f6o4_/ponytools.egg-info/SOURCES.txt'
2025-09-08T01:51:40,651   writing manifest file '/tmp/pip-pip-egg-info-zx4f6o4_/ponytools.egg-info/SOURCES.txt'
2025-09-08T01:51:40,763   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T01:51:40,768   Source in /tmp/pip-wheel-s2j82x9k/ponytools_09e02f9b5ed74df5b81cc9b76c3b4409 has version 0.1.0, which satisfies requirement ponytools==0.1.0 from https://files.pythonhosted.org/packages/31/f4/426f093ad50b9e82b4f8d7cac3e2c1e8441fa02df47d78dad2a6836ead56/ponytools-0.1.0.tar.gz
2025-09-08T01:51:40,768   Removed ponytools==0.1.0 from https://files.pythonhosted.org/packages/31/f4/426f093ad50b9e82b4f8d7cac3e2c1e8441fa02df47d78dad2a6836ead56/ponytools-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-lb8zoufx'
2025-09-08T01:51:40,773 Created temporary directory: /tmp/pip-unpack-5zpok5oz
2025-09-08T01:51:40,773 Created temporary directory: /tmp/pip-unpack-7m6j6glv
2025-09-08T01:51:40,773 Building wheels for collected packages: ponytools
2025-09-08T01:51:40,775   Created temporary directory: /tmp/pip-wheel-goydkf80
2025-09-08T01:51:40,775   DEPRECATION: Building 'ponytools' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'ponytools'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T01:51:40,777   Building wheel for ponytools (setup.py): started
2025-09-08T01:51:40,777   Destination directory: /tmp/pip-wheel-goydkf80
2025-09-08T01:51:40,778   Running command python setup.py bdist_wheel
2025-09-08T01:51:42,115   running bdist_wheel
2025-09-08T01:51:42,492   running build
2025-09-08T01:51:42,492   running build_py
2025-09-08T01:51:42,569   creating build/lib/ponytools
2025-09-08T01:51:42,569   copying ponytools/AxiomGeno.py -> build/lib/ponytools
2025-09-08T01:51:42,570   copying ponytools/__init__.py -> build/lib/ponytools
2025-09-08T01:51:42,571   copying ponytools/Variant.py -> build/lib/ponytools
2025-09-08T01:51:42,571   copying ponytools/VCFBuffer.py -> build/lib/ponytools
2025-09-08T01:51:42,572   copying ponytools/setup.py -> build/lib/ponytools
2025-09-08T01:51:42,572   copying ponytools/MapPed.py -> build/lib/ponytools
2025-09-08T01:51:42,573   copying ponytools/Tools.py -> build/lib/ponytools
2025-09-08T01:51:42,573   copying ponytools/Fasta.py -> build/lib/ponytools
2025-09-08T01:51:42,574   copying ponytools/Trio.py -> build/lib/ponytools
2025-09-08T01:51:42,574   copying ponytools/VCF.py -> build/lib/ponytools
2025-09-08T01:51:42,575   copying ponytools/Allele.py -> build/lib/ponytools
2025-09-08T01:51:42,576   running build_scripts
2025-09-08T01:51:42,577   creating build/scripts-3.13
2025-09-08T01:51:42,577   error: [Errno 2] No such file or directory: 'bin/pyDi'
2025-09-08T01:51:42,690   ERROR: python setup.py bdist_wheel exited with 1
2025-09-08T01:51:42,701   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2025-09-08T01:51:42,701   exec(compile('"'"''"'"''"'"'
2025-09-08T01:51:42,701   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T01:51:42,701   #
2025-09-08T01:51:42,701   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T01:51:42,701   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T01:51:42,701   # - It provides a clear error message when setuptools is not installed.
2025-09-08T01:51:42,701   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T01:51:42,701   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T01:51:42,701   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T01:51:42,701   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T01:51:42,701   import os, sys, tokenize, traceback
2025-09-08T01:51:42,701   
2025-09-08T01:51:42,701   try:
2025-09-08T01:51:42,701       import setuptools
2025-09-08T01:51:42,701   except ImportError:
2025-09-08T01:51:42,701       print(
2025-09-08T01:51:42,701           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T01:51:42,701           "the build environment with exception:",
2025-09-08T01:51:42,701           file=sys.stderr,
2025-09-08T01:51:42,701       )
2025-09-08T01:51:42,701       traceback.print_exc()
2025-09-08T01:51:42,701       sys.exit(1)
2025-09-08T01:51:42,701   
2025-09-08T01:51:42,701   __file__ = %r
2025-09-08T01:51:42,701   sys.argv[0] = __file__
2025-09-08T01:51:42,701   
2025-09-08T01:51:42,701   if os.path.exists(__file__):
2025-09-08T01:51:42,701       filename = __file__
2025-09-08T01:51:42,701       with tokenize.open(__file__) as f:
2025-09-08T01:51:42,701           setup_py_code = f.read()
2025-09-08T01:51:42,701   else:
2025-09-08T01:51:42,701       filename = "<auto-generated setuptools caller>"
2025-09-08T01:51:42,701       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T01:51:42,701   
2025-09-08T01:51:42,701   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T01:51:42,701   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-s2j82x9k/ponytools_09e02f9b5ed74df5b81cc9b76c3b4409/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-goydkf80[/]
2025-09-08T01:51:42,702   [bold magenta]cwd[/]: /tmp/pip-wheel-s2j82x9k/ponytools_09e02f9b5ed74df5b81cc9b76c3b4409/
2025-09-08T01:51:42,702   Building wheel for ponytools (setup.py): finished with status 'error'
2025-09-08T01:51:42,702   ERROR: Failed building wheel for ponytools
2025-09-08T01:51:42,703   Running setup.py clean for ponytools
2025-09-08T01:51:42,704   Running command python setup.py clean
2025-09-08T01:51:44,078   running clean
2025-09-08T01:51:44,223   removing 'build/lib' (and everything under it)
2025-09-08T01:51:44,224   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-08T01:51:44,224   removing 'build/scripts-3.13' (and everything under it)
2025-09-08T01:51:44,224   removing 'build'
2025-09-08T01:51:44,336 Failed to build ponytools
2025-09-08T01:51:44,336 ERROR: Failed to build one or more wheels
2025-09-08T01:51:44,337 Exception information:
2025-09-08T01:51:44,337 Traceback (most recent call last):
2025-09-08T01:51:44,337   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T01:51:44,337     status = _inner_run()
2025-09-08T01:51:44,337   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T01:51:44,337     return self.run(options, args)
2025-09-08T01:51:44,337            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T01:51:44,337   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T01:51:44,337     return func(self, options, args)
2025-09-08T01:51:44,337   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2025-09-08T01:51:44,337     raise CommandError("Failed to build one or more wheels")
2025-09-08T01:51:44,337 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-08T01:51:44,342 Removed build tracker: '/tmp/pip-build-tracker-lb8zoufx'