2025-09-08T01:54:47,109 Created temporary directory: /tmp/pip-build-tracker-k__ncdf4 2025-09-08T01:54:47,110 Initialized build tracking at /tmp/pip-build-tracker-k__ncdf4 2025-09-08T01:54:47,110 Created build tracker: /tmp/pip-build-tracker-k__ncdf4 2025-09-08T01:54:47,110 Entered build tracker: /tmp/pip-build-tracker-k__ncdf4 2025-09-08T01:54:47,110 Created temporary directory: /tmp/pip-wheel-63kdxb16 2025-09-08T01:54:47,113 Created temporary directory: /tmp/pip-ephem-wheel-cache-37a5f0el 2025-09-08T01:54:47,172 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T01:54:47,174 2 location(s) to search for versions of libstempo: 2025-09-08T01:54:47,174 * https://pypi.org/simple/libstempo/ 2025-09-08T01:54:47,174 * https://www.piwheels.org/simple/libstempo/ 2025-09-08T01:54:47,174 Fetching project page and analyzing links: https://pypi.org/simple/libstempo/ 2025-09-08T01:54:47,175 Getting page https://pypi.org/simple/libstempo/ 2025-09-08T01:54:47,176 Found index url https://pypi.org/simple/ 2025-09-08T01:54:47,245 Fetched page https://pypi.org/simple/libstempo/ as application/vnd.pypi.simple.v1+json 2025-09-08T01:54:47,250 Found link https://files.pythonhosted.org/packages/b3/43/fec1ea1d0d8e2580937a80fc1a3f08b856a008db7af7fd2c3a9c9bc37d1f/libstempo-1.0.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.0 2025-09-08T01:54:47,250 Found link https://files.pythonhosted.org/packages/86/d5/096a9284b050d1c28f5313dcb2a560a73988f9e3a8422ae187755d086656/libstempo-1.0.1.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.0.1 2025-09-08T01:54:47,250 Found link https://files.pythonhosted.org/packages/e1/ca/2cbd2fbd19403c559b5f8ad2a3dca24c41c8813f2a704881c05b4583f00b/libstempo-1.0.2.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.0.2 2025-09-08T01:54:47,250 Found link https://files.pythonhosted.org/packages/50/4b/1b1e549ddb800328963b6ac1c10ef1af305300a2c75b6e7e13ea27690cbb/libstempo-1.0.3.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.0.3 2025-09-08T01:54:47,251 Found link https://files.pythonhosted.org/packages/27/68/f7b59be5fc707efcba79890af4783b78b4d1351b78811592417a1b84a055/libstempo-1.0.4.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.0.4 2025-09-08T01:54:47,251 Found link https://files.pythonhosted.org/packages/22/8e/bf4d10cc8303dbe7c2099e1a29e6c2f5749243d5794e028833fdc8942d16/libstempo-1.1.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.1 2025-09-08T01:54:47,251 Found link https://files.pythonhosted.org/packages/5f/91/1a3d82b8fcfb09f1928b4604e9969bd3327773372b3186013cff93003485/libstempo-1.1.1.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.1.1 2025-09-08T01:54:47,251 Found link https://files.pythonhosted.org/packages/0e/11/8cca68e3ef5083fb82cc20ee866c37da01306e9f262b977879082861ebbd/libstempo-1.1.2.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.1.2 2025-09-08T01:54:47,252 Found link https://files.pythonhosted.org/packages/6b/2b/56362bf80d644f7954eadb43c49880e216315276ba32be0f09d4026084df/libstempo-1.2.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2 2025-09-08T01:54:47,252 Found link https://files.pythonhosted.org/packages/09/36/a7270e097b213e643bfad6f38882ec01f522ab2a40e363992cbb1c8630a3/libstempo-1.2.1.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.1 2025-09-08T01:54:47,252 Found link https://files.pythonhosted.org/packages/72/3b/c497176e066f71381955ed08bdd6c97a70a0bdd7b67e9091cca07e45a422/libstempo-1.2.2.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.2 2025-09-08T01:54:47,252 Found link https://files.pythonhosted.org/packages/91/e0/70fd157db2ee559cca691351e461638a08ae8effd890bc9813bfe221db81/libstempo-1.2.3.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.3 2025-09-08T01:54:47,252 Found link https://files.pythonhosted.org/packages/4b/2f/770bf6a51970baa43e22338b227bbdbdc2513cd022da793ebe49d9a5ddda/libstempo-1.2.4.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.4 2025-09-08T01:54:47,253 Found link https://files.pythonhosted.org/packages/12/ce/a36e6ec72bc204a9e92380564fa79d071088c73c901c138a5a81dabd0a05/libstempo-1.2.5.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.5 2025-09-08T01:54:47,253 Found link https://files.pythonhosted.org/packages/e3/7b/9c009e6894f25a73c9bed69227c26b522195e18b216d79b3386d59c816b8/libstempo-1.2.6.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.6 2025-09-08T01:54:47,253 Found link https://files.pythonhosted.org/packages/03/7b/a452354dc39c95d18f26d6226dab8f23e02e4cc40e7c0f452dbc45c9a23b/libstempo-1.2.7.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.7 2025-09-08T01:54:47,253 Found link https://files.pythonhosted.org/packages/4b/31/11076ea4d40b8140682fecdc60745081a93f9503ea1b8cf5b6198fd08278/libstempo-1.2.8.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.8 2025-09-08T01:54:47,253 Found link https://files.pythonhosted.org/packages/ee/f1/09dcce6624a892de5f79f6aac2480e9f30266a556fd1ce6c8415d160bc65/libstempo-1.2.9.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.9 2025-09-08T01:54:47,254 Found link https://files.pythonhosted.org/packages/57/72/ca7aa6bfad4e22181fefd8b6376f877744f04679d17dee8c071082d019e0/libstempo-1.2.10.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.2.10 2025-09-08T01:54:47,254 Found link https://files.pythonhosted.org/packages/39/5d/178fad894d2864cd2b66949c6bcf52da9c0a02861bbf57cbca78b1132bdf/libstempo-1.3.1.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.3.1 2025-09-08T01:54:47,254 Found link https://files.pythonhosted.org/packages/de/01/54c3bcf135acf6e74f435c0aa7c1ba7283e9f412741cdf84c6336b2f6409/libstempo-1.3.2.tar.gz (from https://pypi.org/simple/libstempo/), version: 1.3.2 2025-09-08T01:54:47,254 Found link https://files.pythonhosted.org/packages/eb/82/0a12f65dfd37cce33675b00dc061efb7decd88c9426872ad08e0472ef2e4/libstempo-2.2.0.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.2.0 2025-09-08T01:54:47,255 Found link https://files.pythonhosted.org/packages/4c/71/09d5e95dae879a4c873163ed915a63e7f60b18153050b10c53900cb750d2/libstempo-2.2.1.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.2.1 2025-09-08T01:54:47,255 Found link https://files.pythonhosted.org/packages/c7/38/fc0d5c301e8c726bb9b9d4470620973ed21b634d1a41100af770685321e6/libstempo-2.2.2.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.2.2 2025-09-08T01:54:47,255 Found link https://files.pythonhosted.org/packages/ce/f8/8ba0228ccfef2cb4058ddd4438506bbe64b08a1129274c8a0ed71bbb5d05/libstempo-2.2.3.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.2.3 2025-09-08T01:54:47,255 Found link https://files.pythonhosted.org/packages/8f/8b/81920769101d249177edf2f70756c2da399ff7be654ab313305c58d6a501/libstempo-2.2.4.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.2.4 2025-09-08T01:54:47,255 Found link https://files.pythonhosted.org/packages/c0/6d/66103b0a9ffd67ad3002f96c0c1f89185e20ae5c3743388919cd88dd3789/libstempo-2.2.5.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.2.5 2025-09-08T01:54:47,256 Found link https://files.pythonhosted.org/packages/f3/93/9112d2319183274cefadab02ff1fb7959d88eb4f4fa9084eb55098433b0c/libstempo-2.3.1.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.3.1 2025-09-08T01:54:47,256 Found link https://files.pythonhosted.org/packages/14/05/b5b77fb8b82098e5bff92ca29e9f8493602f26ac576771f4447865c9f039/libstempo-2.3.2.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.3.2 2025-09-08T01:54:47,256 Found link https://files.pythonhosted.org/packages/99/57/84dd79186e94f58769d40f668619129aefa0b62e6ab2099281b51738ed01/libstempo-2.3.3.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.3.3 2025-09-08T01:54:47,256 Found link https://files.pythonhosted.org/packages/dc/a2/b8db2b20cc734c38a499d67b516cb8d85f07b5d43a6a9b0206b6fc41f3f8/libstempo-2.3.4.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.3.4 2025-09-08T01:54:47,256 Found link https://files.pythonhosted.org/packages/79/4d/8cd2255bf3db43ab028b58b9a01876e6d4580ba32290795149622852b5dd/libstempo-2.3.5.tar.gz (from https://pypi.org/simple/libstempo/), version: 2.3.5 2025-09-08T01:54:47,257 Found link https://files.pythonhosted.org/packages/72/77/eb138d5149b31c1fbed766857de6fce08df5dced3d55320a2339c9d7e1e4/libstempo-2.4.0.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:>=3.6), version: 2.4.0 2025-09-08T01:54:47,257 Found link https://files.pythonhosted.org/packages/51/10/524a5408c7870c1dbe5c567d73085d6d2e57bb7ac6405b1c188ab18f3c18/libstempo-2.4.1.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:>=3.6), version: 2.4.1 2025-09-08T01:54:47,258 Found link https://files.pythonhosted.org/packages/7b/e8/53564c6c5a9344b0f50cff4e828f8993d6a08aa74ddec5cfd55cc7bd6e92/libstempo-2.4.2.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:>=3.6), version: 2.4.2 2025-09-08T01:54:47,258 Found link https://files.pythonhosted.org/packages/00/4c/ac9e0edc9b90909eca6f970d2b2cd3ba838802edf03dd7522f5c65ad499a/libstempo-2.4.3.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:>=3.6), version: 2.4.3 2025-09-08T01:54:47,258 Found link https://files.pythonhosted.org/packages/22/62/8f01a1bda561da988dd076cfbbf1b5798823c48a3f6b3e9d7f2ad6b0f3fa/libstempo-2.4.4.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:>=3.6), version: 2.4.4 2025-09-08T01:54:47,259 Found link https://files.pythonhosted.org/packages/3b/10/cbf8af65e958894e03517f4bf3ae67b1e6738809c86101b35d421b38a5e0/libstempo-2.4.5.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:>=3.7), version: 2.4.5 2025-09-08T01:54:47,259 Found link https://files.pythonhosted.org/packages/09/2e/b1f255e3a09376090cbba04fceb5f489f4ea2b8761da1cef519de3215736/libstempo-2.4.6.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:>=3.7), version: 2.4.6 2025-09-08T01:54:47,259 Found link https://files.pythonhosted.org/packages/ab/b5/4a4bc8a50e2fe7402686f3a325a5b061e373cf74994e3d784f004f5cd06f/libstempo-2.4.7.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:>=3.7), version: 2.4.7 2025-09-08T01:54:47,260 Found link https://files.pythonhosted.org/packages/b6/94/b1b9e5df5eb0c6a73151147b6fa75b01425c9233889ce4a6fd3e27dccfb2/libstempo-2.5.0.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:<4,>=3.8), version: 2.5.0 2025-09-08T01:54:47,260 Found link https://files.pythonhosted.org/packages/40/b4/e890d7d0f5c072f95fa7b36b9a66eaf00c59b7be6a0b1eea3f529cd14042/libstempo-2.5.1.tar.gz (from https://pypi.org/simple/libstempo/) (requires-python:<4,>=3.8), version: 2.5.1 2025-09-08T01:54:47,260 Fetching project page and analyzing links: https://www.piwheels.org/simple/libstempo/ 2025-09-08T01:54:47,261 Getting page https://www.piwheels.org/simple/libstempo/ 2025-09-08T01:54:47,261 Found index url https://www.piwheels.org/simple/ 2025-09-08T01:54:47,355 Fetched page https://www.piwheels.org/simple/libstempo/ as text/html 2025-09-08T01:54:47,356 Skipping link: not a file: https://www.piwheels.org/simple/libstempo/ 2025-09-08T01:54:47,356 Skipping link: not a file: https://pypi.org/simple/libstempo/ 2025-09-08T01:54:47,385 Given no hashes to check 1 links for project 'libstempo': discarding no candidates 2025-09-08T01:54:47,386 Collecting libstempo==2.2.2 2025-09-08T01:54:47,388 Created temporary directory: /tmp/pip-unpack-npo9wp0p 2025-09-08T01:54:47,545 Downloading libstempo-2.2.2.tar.gz (736 kB) 2025-09-08T01:54:47,694 Added libstempo==2.2.2 from https://files.pythonhosted.org/packages/c7/38/fc0d5c301e8c726bb9b9d4470620973ed21b634d1a41100af770685321e6/libstempo-2.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-k__ncdf4' 2025-09-08T01:54:47,696 Running setup.py (path:/tmp/pip-wheel-63kdxb16/libstempo_1218261f53964694b511e6d20441ddf2/setup.py) egg_info for package libstempo 2025-09-08T01:54:47,696 Created temporary directory: /tmp/pip-pip-egg-info-fsb84qsa 2025-09-08T01:54:47,696 Preparing metadata (setup.py): started 2025-09-08T01:54:47,697 Running command python setup.py egg_info 2025-09-08T01:54:51,153 Error compiling Cython file: 2025-09-08T01:54:51,153 ------------------------------------------------------------ 2025-09-08T01:54:51,153 ... 2025-09-08T01:54:51,153 def tempo2version(): 2025-09-08T01:54:51,153 return StrictVersion(str(TEMPO2_VERSION).split()[1]) 2025-09-08T01:54:51,153 cdef class tempopulsar: 2025-09-08T01:54:51,153 cpdef object parfile 2025-09-08T01:54:51,153 ^ 2025-09-08T01:54:51,153 ------------------------------------------------------------ 2025-09-08T01:54:51,154 libstempo/libstempo.pyx:363:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:51,154 Error compiling Cython file: 2025-09-08T01:54:51,154 ------------------------------------------------------------ 2025-09-08T01:54:51,154 ... 2025-09-08T01:54:51,154 def tempo2version(): 2025-09-08T01:54:51,154 return StrictVersion(str(TEMPO2_VERSION).split()[1]) 2025-09-08T01:54:51,154 cdef class tempopulsar: 2025-09-08T01:54:51,154 cpdef object parfile 2025-09-08T01:54:51,155 cpdef object timfile 2025-09-08T01:54:51,155 ^ 2025-09-08T01:54:51,155 ------------------------------------------------------------ 2025-09-08T01:54:51,155 libstempo/libstempo.pyx:364:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:51,155 Error compiling Cython file: 2025-09-08T01:54:51,155 ------------------------------------------------------------ 2025-09-08T01:54:51,155 ... 2025-09-08T01:54:51,155 cpdef object timfile 2025-09-08T01:54:51,156 cdef int npsr # number of pulsars 2025-09-08T01:54:51,156 cdef pulsar *psr # array of pulsar structures 2025-09-08T01:54:51,156 cpdef object pardict # dictionary of parameter proxies 2025-09-08T01:54:51,156 ^ 2025-09-08T01:54:51,156 ------------------------------------------------------------ 2025-09-08T01:54:51,156 libstempo/libstempo.pyx:369:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:51,156 Error compiling Cython file: 2025-09-08T01:54:51,156 ------------------------------------------------------------ 2025-09-08T01:54:51,156 ... 2025-09-08T01:54:51,157 cdef int npsr # number of pulsars 2025-09-08T01:54:51,157 cdef pulsar *psr # array of pulsar structures 2025-09-08T01:54:51,157 cpdef object pardict # dictionary of parameter proxies 2025-09-08T01:54:51,157 cpdef int nobs_ # number of observations 2025-09-08T01:54:51,157 ^ 2025-09-08T01:54:51,157 ------------------------------------------------------------ 2025-09-08T01:54:51,158 libstempo/libstempo.pyx:371:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:51,158 Error compiling Cython file: 2025-09-08T01:54:51,158 ------------------------------------------------------------ 2025-09-08T01:54:51,158 ... 2025-09-08T01:54:51,158 cpdef object pardict # dictionary of parameter proxies 2025-09-08T01:54:51,158 cpdef int nobs_ # number of observations 2025-09-08T01:54:51,158 cpdef object flagnames_ # a list of all flags that have values 2025-09-08T01:54:51,158 ^ 2025-09-08T01:54:51,159 ------------------------------------------------------------ 2025-09-08T01:54:51,159 libstempo/libstempo.pyx:373:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:51,159 Error compiling Cython file: 2025-09-08T01:54:51,159 ------------------------------------------------------------ 2025-09-08T01:54:51,159 ... 2025-09-08T01:54:51,159 cpdef object pardict # dictionary of parameter proxies 2025-09-08T01:54:51,159 cpdef int nobs_ # number of observations 2025-09-08T01:54:51,160 cpdef object flagnames_ # a list of all flags that have values 2025-09-08T01:54:51,160 cpdef object flags_ # a dictionary of numpy arrays with flag values 2025-09-08T01:54:51,160 ^ 2025-09-08T01:54:51,160 ------------------------------------------------------------ 2025-09-08T01:54:51,160 libstempo/libstempo.pyx:374:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:51,160 Error compiling Cython file: 2025-09-08T01:54:51,160 ------------------------------------------------------------ 2025-09-08T01:54:51,160 ... 2025-09-08T01:54:51,160 cpdef int nobs_ # number of observations 2025-09-08T01:54:51,161 cpdef object flagnames_ # a list of all flags that have values 2025-09-08T01:54:51,161 cpdef object flags_ # a dictionary of numpy arrays with flag values 2025-09-08T01:54:51,161 cpdef public double fitchisq # chisq after tempo2 fit 2025-09-08T01:54:51,161 ^ 2025-09-08T01:54:51,161 ------------------------------------------------------------ 2025-09-08T01:54:51,161 libstempo/libstempo.pyx:376:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:51,161 Error compiling Cython file: 2025-09-08T01:54:51,162 ------------------------------------------------------------ 2025-09-08T01:54:51,162 ... 2025-09-08T01:54:51,162 cpdef object flagnames_ # a list of all flags that have values 2025-09-08T01:54:51,162 cpdef object flags_ # a dictionary of numpy arrays with flag values 2025-09-08T01:54:51,162 cpdef public double fitchisq # chisq after tempo2 fit 2025-09-08T01:54:51,162 cpdef public double fitrms # rms residuals after tempo2 fit 2025-09-08T01:54:51,162 ^ 2025-09-08T01:54:51,162 ------------------------------------------------------------ 2025-09-08T01:54:51,162 libstempo/libstempo.pyx:377:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:51,163 Error compiling Cython file: 2025-09-08T01:54:51,163 ------------------------------------------------------------ 2025-09-08T01:54:51,163 ... 2025-09-08T01:54:51,163 cpdef public double fitchisq # chisq after tempo2 fit 2025-09-08T01:54:51,163 cpdef public double fitrms # rms residuals after tempo2 fit 2025-09-08T01:54:51,163 # TO DO: is cpdef required here? 2025-09-08T01:54:51,163 cpdef jumpval, jumperr 2025-09-08T01:54:51,164 ^ 2025-09-08T01:54:51,164 ------------------------------------------------------------ 2025-09-08T01:54:51,164 libstempo/libstempo.pyx:380:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:51,164 Error compiling Cython file: 2025-09-08T01:54:51,164 ------------------------------------------------------------ 2025-09-08T01:54:51,164 ... 2025-09-08T01:54:51,164 cpdef public double fitchisq # chisq after tempo2 fit 2025-09-08T01:54:51,164 cpdef public double fitrms # rms residuals after tempo2 fit 2025-09-08T01:54:51,165 # TO DO: is cpdef required here? 2025-09-08T01:54:51,165 cpdef jumpval, jumperr 2025-09-08T01:54:51,165 ^ 2025-09-08T01:54:51,165 ------------------------------------------------------------ 2025-09-08T01:54:51,165 libstempo/libstempo.pyx:380:4: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. 2025-09-08T01:54:52,720 Traceback (most recent call last): 2025-09-08T01:54:52,723 File "", line 2, in 2025-09-08T01:54:52,723 exec(compile(''' 2025-09-08T01:54:52,723 ~~~~^^^^^^^^^^^^ 2025-09-08T01:54:52,723 # This is -- a caller that pip uses to run setup.py 2025-09-08T01:54:52,723 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:52,723 ...<32 lines>... 2025-09-08T01:54:52,724 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T01:54:52,724 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:52,724 ''' % ('/tmp/pip-wheel-63kdxb16/libstempo_1218261f53964694b511e6d20441ddf2/setup.py',), "", "exec")) 2025-09-08T01:54:52,724 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:52,724 File "", line 35, in 2025-09-08T01:54:52,724 File "/tmp/pip-wheel-63kdxb16/libstempo_1218261f53964694b511e6d20441ddf2/setup.py", line 77, in 2025-09-08T01:54:52,724 ext_modules = cythonize(Extension('libstempo.libstempo',['libstempo/libstempo.pyx'], 2025-09-08T01:54:52,725 language="c++", 2025-09-08T01:54:52,725 include_dirs = [tempo2 + '/include',numpy.get_include()], 2025-09-08T01:54:52,725 libraries = ['tempo2'], 2025-09-08T01:54:52,725 library_dirs = [tempo2 + '/lib'])) 2025-09-08T01:54:52,725 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T01:54:52,725 cythonize_one(*args) 2025-09-08T01:54:52,725 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T01:54:52,725 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T01:54:52,725 raise CompileError(None, pyx_file) 2025-09-08T01:54:52,726 Cython.Compiler.Errors.CompileError: libstempo/libstempo.pyx 2025-09-08T01:54:52,726 WARNING: The libstempo API has changed substantially (for the better) from 2025-09-08T01:54:52,726 versions 1.X to 2.X. If you need the older 1.X API, you can get an older libstempo 2025-09-08T01:54:52,726 from https://pypi.python.org/simple/libstempo, or checkout the libstempo1 2025-09-08T01:54:52,726 branch on GitHub - https://github.com/vallis/libstempo/tree/libstempo1 2025-09-08T01:54:52,726 I have not been able to autodetect the location of the tempo2 headers and 2025-09-08T01:54:52,726 libraries. Nevertheless, I will proceed with the installation. If you get 2025-09-08T01:54:52,726 errors, please run setup.py again, but use the option --with-tempo2=... 2025-09-08T01:54:52,727 to point me to the tempo2 install root (e.g., /usr/local if tempo2.h is 2025-09-08T01:54:52,727 in /usr/local/include). 2025-09-08T01:54:52,727 Compiling libstempo/libstempo.pyx because it changed. 2025-09-08T01:54:52,727 [1/1] Cythonizing libstempo/libstempo.pyx 2025-09-08T01:54:53,298 ERROR: python setup.py egg_info exited with 1 2025-09-08T01:54:53,309 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T01:54:53,309 exec(compile('"'"''"'"''"'"' 2025-09-08T01:54:53,309 # This is -- a caller that pip uses to run setup.py 2025-09-08T01:54:53,309 # 2025-09-08T01:54:53,309 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T01:54:53,309 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T01:54:53,309 # - It provides a clear error message when setuptools is not installed. 2025-09-08T01:54:53,309 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T01:54:53,309 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T01:54:53,309 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T01:54:53,309 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T01:54:53,309 import os, sys, tokenize, traceback 2025-09-08T01:54:53,309 2025-09-08T01:54:53,309 try: 2025-09-08T01:54:53,309 import setuptools 2025-09-08T01:54:53,309 except ImportError: 2025-09-08T01:54:53,309 print( 2025-09-08T01:54:53,309 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T01:54:53,309 "the build environment with exception:", 2025-09-08T01:54:53,309 file=sys.stderr, 2025-09-08T01:54:53,309 ) 2025-09-08T01:54:53,309 traceback.print_exc() 2025-09-08T01:54:53,309 sys.exit(1) 2025-09-08T01:54:53,309 2025-09-08T01:54:53,309 __file__ = %r 2025-09-08T01:54:53,309 sys.argv[0] = __file__ 2025-09-08T01:54:53,309 2025-09-08T01:54:53,309 if os.path.exists(__file__): 2025-09-08T01:54:53,309 filename = __file__ 2025-09-08T01:54:53,309 with tokenize.open(__file__) as f: 2025-09-08T01:54:53,309 setup_py_code = f.read() 2025-09-08T01:54:53,309 else: 2025-09-08T01:54:53,309 filename = "" 2025-09-08T01:54:53,309 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T01:54:53,309 2025-09-08T01:54:53,309 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T01:54:53,309 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-63kdxb16/libstempo_1218261f53964694b511e6d20441ddf2/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-fsb84qsa[/] 2025-09-08T01:54:53,310 [bold magenta]cwd[/]: /tmp/pip-wheel-63kdxb16/libstempo_1218261f53964694b511e6d20441ddf2/ 2025-09-08T01:54:53,310 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T01:54:53,311 ERROR: metadata generation failed 2025-09-08T01:54:53,316 Exception information: 2025-09-08T01:54:53,316 Traceback (most recent call last): 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T01:54:53,316 call_subprocess( 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~^ 2025-09-08T01:54:53,316 args, 2025-09-08T01:54:53,316 ^^^^^ 2025-09-08T01:54:53,316 ...<2 lines>... 2025-09-08T01:54:53,316 spinner=spinner, 2025-09-08T01:54:53,316 ^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 ) 2025-09-08T01:54:53,316 ^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T01:54:53,316 raise error 2025-09-08T01:54:53,316 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T01:54:53,316 2025-09-08T01:54:53,316 The above exception was the direct cause of the following exception: 2025-09-08T01:54:53,316 2025-09-08T01:54:53,316 Traceback (most recent call last): 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T01:54:53,316 status = _inner_run() 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T01:54:53,316 return self.run(options, args) 2025-09-08T01:54:53,316 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T01:54:53,316 return func(self, options, args) 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T01:54:53,316 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T01:54:53,316 result = self._result = resolver.resolve( 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~~^ 2025-09-08T01:54:53,316 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T01:54:53,316 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 ) 2025-09-08T01:54:53,316 ^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T01:54:53,316 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T01:54:53,316 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T01:54:53,316 if not criterion.candidates: 2025-09-08T01:54:53,316 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T01:54:53,316 return bool(self._sequence) 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T01:54:53,316 self._bool = any(self) 2025-09-08T01:54:53,316 ~~~^^^^^^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T01:54:53,316 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T01:54:53,316 ^^^^^^^^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T01:54:53,316 candidate = func() 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T01:54:53,316 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T01:54:53,316 link, template, name, version 2025-09-08T01:54:53,316 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 ) 2025-09-08T01:54:53,316 ^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T01:54:53,316 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~^ 2025-09-08T01:54:53,316 link, 2025-09-08T01:54:53,316 ^^^^^ 2025-09-08T01:54:53,316 ...<3 lines>... 2025-09-08T01:54:53,316 version=version, 2025-09-08T01:54:53,316 ^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 ) 2025-09-08T01:54:53,316 ^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T01:54:53,316 super().__init__( 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~~^ 2025-09-08T01:54:53,316 link=link, 2025-09-08T01:54:53,316 ^^^^^^^^^^ 2025-09-08T01:54:53,316 ...<4 lines>... 2025-09-08T01:54:53,316 version=version, 2025-09-08T01:54:53,316 ^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 ) 2025-09-08T01:54:53,316 ^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T01:54:53,316 self.dist = self._prepare() 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~^^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T01:54:53,316 dist = self._prepare_distribution() 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T01:54:53,316 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T01:54:53,316 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T01:54:53,316 dist = _get_prepared_distribution( 2025-09-08T01:54:53,316 req, 2025-09-08T01:54:53,316 ...<3 lines>... 2025-09-08T01:54:53,316 self.check_build_deps, 2025-09-08T01:54:53,316 ) 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T01:54:53,316 abstract_dist.prepare_distribution_metadata( 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T01:54:53,316 finder, build_isolation, check_build_deps 2025-09-08T01:54:53,316 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 ) 2025-09-08T01:54:53,316 ^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T01:54:53,316 self.req.prepare_metadata() 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T01:54:53,316 self.metadata_directory = generate_metadata_legacy( 2025-09-08T01:54:53,316 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T01:54:53,316 build_env=self.build_env, 2025-09-08T01:54:53,316 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 ...<3 lines>... 2025-09-08T01:54:53,316 details=details, 2025-09-08T01:54:53,316 ^^^^^^^^^^^^^^^^ 2025-09-08T01:54:53,316 ) 2025-09-08T01:54:53,316 ^ 2025-09-08T01:54:53,316 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T01:54:53,316 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T01:54:53,316 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T01:54:53,336 Removed libstempo==2.2.2 from https://files.pythonhosted.org/packages/c7/38/fc0d5c301e8c726bb9b9d4470620973ed21b634d1a41100af770685321e6/libstempo-2.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-k__ncdf4' 2025-09-08T01:54:53,336 Removed build tracker: '/tmp/pip-build-tracker-k__ncdf4'