2025-09-08T01:56:03,203 Created temporary directory: /tmp/pip-build-tracker-6wo3skno 2025-09-08T01:56:03,204 Initialized build tracking at /tmp/pip-build-tracker-6wo3skno 2025-09-08T01:56:03,204 Created build tracker: /tmp/pip-build-tracker-6wo3skno 2025-09-08T01:56:03,204 Entered build tracker: /tmp/pip-build-tracker-6wo3skno 2025-09-08T01:56:03,204 Created temporary directory: /tmp/pip-wheel-ks1hz4ar 2025-09-08T01:56:03,207 Created temporary directory: /tmp/pip-ephem-wheel-cache-6uwvry4s 2025-09-08T01:56:03,264 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T01:56:03,266 2 location(s) to search for versions of hmmerclust: 2025-09-08T01:56:03,266 * https://pypi.org/simple/hmmerclust/ 2025-09-08T01:56:03,266 * https://www.piwheels.org/simple/hmmerclust/ 2025-09-08T01:56:03,267 Fetching project page and analyzing links: https://pypi.org/simple/hmmerclust/ 2025-09-08T01:56:03,267 Getting page https://pypi.org/simple/hmmerclust/ 2025-09-08T01:56:03,268 Found index url https://pypi.org/simple/ 2025-09-08T01:56:03,341 Fetched page https://pypi.org/simple/hmmerclust/ as application/vnd.pypi.simple.v1+json 2025-09-08T01:56:03,343 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/ba/2f/ae7fcf49d1468169d403ae7d47a010cbda4436edf3afdf6fdbe466018084/hmmerclust-0.0.1.dev1-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2025-09-08T01:56:03,343 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/7e/0f/25c384bee231991a77a341306dd28e2f0a12c1624de4f444406a5be189a0/hmmerclust-0.0.1.dev1-py2.7.egg (from https://pypi.org/simple/hmmerclust/) 2025-09-08T01:56:03,343 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/53/2c/a31e72a55345ac93ba1312302471efbdbd20e3dcf9cdf4d5b53a835409e3/hmmerclust-0.0.1.dev1-py3.4.egg (from https://pypi.org/simple/hmmerclust/) 2025-09-08T01:56:03,343 Found link https://files.pythonhosted.org/packages/df/69/20c573547efd11889053faec843babce75f4c3df39ec41b8dcdb15920cbf/hmmerclust-0.0.1.dev1.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev1 2025-09-08T01:56:03,343 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/5d/a1/b75c014ee8eb713b6472672c37dc1fc57bbc62b77d56ba2d578fc36422b1/hmmerclust-0.0.1.dev2-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2025-09-08T01:56:03,344 Found link https://files.pythonhosted.org/packages/79/46/cb88bae3df53fd222674c3a19d9981ff60918db20e2ff89fe24e12d791e4/hmmerclust-0.0.1.dev2.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev2 2025-09-08T01:56:03,344 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/88/10/82806f96a22347bd8de1226f016c369c8225f74278b810445409f047266a/hmmerclust-0.0.1.dev3-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2025-09-08T01:56:03,344 Found link https://files.pythonhosted.org/packages/5c/5d/47dc4e03b1ae405dc8a3d8637d1f47627b3e04a33f74da5303f5f4547431/hmmerclust-0.0.1.dev3.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev3 2025-09-08T01:56:03,344 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/66/87/7bea32389c9972060d8126499869f560ed3373299431b15154268dc125cd/hmmerclust-0.0.1.dev4-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2025-09-08T01:56:03,344 Found link https://files.pythonhosted.org/packages/19/58/01ee64c989c48313d83d3e7708fda60ad54b13e267c06d885b31330480b4/hmmerclust-0.0.1.dev4.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev4 2025-09-08T01:56:03,344 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/23/95/328295fd6f72a5906725da18f0481f5ab466625b8b04a570352af157447e/hmmerclust-0.0.1.dev5-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2025-09-08T01:56:03,345 Found link https://files.pythonhosted.org/packages/09/04/23a8aca6d4b3eaf66d007aa89d0695a7f1f4033bfbc1c4b8bbc3141224a8/hmmerclust-0.0.1.dev5.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev5 2025-09-08T01:56:03,345 Fetching project page and analyzing links: https://www.piwheels.org/simple/hmmerclust/ 2025-09-08T01:56:03,345 Getting page https://www.piwheels.org/simple/hmmerclust/ 2025-09-08T01:56:03,346 Found index url https://www.piwheels.org/simple/ 2025-09-08T01:56:03,442 Fetched page https://www.piwheels.org/simple/hmmerclust/ as text/html 2025-09-08T01:56:03,443 Skipping link: not a file: https://www.piwheels.org/simple/hmmerclust/ 2025-09-08T01:56:03,443 Skipping link: not a file: https://pypi.org/simple/hmmerclust/ 2025-09-08T01:56:03,468 Given no hashes to check 1 links for project 'hmmerclust': discarding no candidates 2025-09-08T01:56:03,469 Collecting hmmerclust==0.0.1.dev3 2025-09-08T01:56:03,470 Created temporary directory: /tmp/pip-unpack-n0owjn85 2025-09-08T01:56:03,609 Downloading hmmerclust-0.0.1.dev3.tar.gz (11 kB) 2025-09-08T01:56:03,638 Added hmmerclust==0.0.1.dev3 from https://files.pythonhosted.org/packages/5c/5d/47dc4e03b1ae405dc8a3d8637d1f47627b3e04a33f74da5303f5f4547431/hmmerclust-0.0.1.dev3.tar.gz to build tracker '/tmp/pip-build-tracker-6wo3skno' 2025-09-08T01:56:03,639 Running setup.py (path:/tmp/pip-wheel-ks1hz4ar/hmmerclust_0c6b9ff933464e5aab6dda2ff994d196/setup.py) egg_info for package hmmerclust 2025-09-08T01:56:03,639 Created temporary directory: /tmp/pip-pip-egg-info-xwqb3gvf 2025-09-08T01:56:03,639 Preparing metadata (setup.py): started 2025-09-08T01:56:03,640 Running command python setup.py egg_info 2025-09-08T01:56:04,164 Traceback (most recent call last): 2025-09-08T01:56:04,165 File "", line 2, in 2025-09-08T01:56:04,165 exec(compile(''' 2025-09-08T01:56:04,165 ~~~~^^^^^^^^^^^^ 2025-09-08T01:56:04,166 # This is -- a caller that pip uses to run setup.py 2025-09-08T01:56:04,166 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,166 ...<32 lines>... 2025-09-08T01:56:04,166 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T01:56:04,166 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,166 ''' % ('/tmp/pip-wheel-ks1hz4ar/hmmerclust_0c6b9ff933464e5aab6dda2ff994d196/setup.py',), "", "exec")) 2025-09-08T01:56:04,166 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,167 File "", line 35, in 2025-09-08T01:56:04,167 File "/tmp/pip-wheel-ks1hz4ar/hmmerclust_0c6b9ff933464e5aab6dda2ff994d196/setup.py", line 16, in 2025-09-08T01:56:04,167 with open(path.join(here, 'DESCRIPTION.rst'), encoding='utf-8') as f: 2025-09-08T01:56:04,167 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,167 File "", line 921, in open 2025-09-08T01:56:04,167 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/pip-wheel-ks1hz4ar/hmmerclust_0c6b9ff933464e5aab6dda2ff994d196/DESCRIPTION.rst' 2025-09-08T01:56:04,252 ERROR: python setup.py egg_info exited with 1 2025-09-08T01:56:04,265 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T01:56:04,265 exec(compile('"'"''"'"''"'"' 2025-09-08T01:56:04,265 # This is -- a caller that pip uses to run setup.py 2025-09-08T01:56:04,265 # 2025-09-08T01:56:04,265 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T01:56:04,265 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T01:56:04,265 # - It provides a clear error message when setuptools is not installed. 2025-09-08T01:56:04,265 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T01:56:04,265 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T01:56:04,265 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T01:56:04,265 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T01:56:04,265 import os, sys, tokenize, traceback 2025-09-08T01:56:04,265 2025-09-08T01:56:04,265 try: 2025-09-08T01:56:04,265 import setuptools 2025-09-08T01:56:04,265 except ImportError: 2025-09-08T01:56:04,265 print( 2025-09-08T01:56:04,265 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T01:56:04,265 "the build environment with exception:", 2025-09-08T01:56:04,265 file=sys.stderr, 2025-09-08T01:56:04,265 ) 2025-09-08T01:56:04,265 traceback.print_exc() 2025-09-08T01:56:04,265 sys.exit(1) 2025-09-08T01:56:04,265 2025-09-08T01:56:04,265 __file__ = %r 2025-09-08T01:56:04,265 sys.argv[0] = __file__ 2025-09-08T01:56:04,265 2025-09-08T01:56:04,265 if os.path.exists(__file__): 2025-09-08T01:56:04,265 filename = __file__ 2025-09-08T01:56:04,265 with tokenize.open(__file__) as f: 2025-09-08T01:56:04,265 setup_py_code = f.read() 2025-09-08T01:56:04,265 else: 2025-09-08T01:56:04,265 filename = "" 2025-09-08T01:56:04,265 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T01:56:04,265 2025-09-08T01:56:04,265 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T01:56:04,265 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ks1hz4ar/hmmerclust_0c6b9ff933464e5aab6dda2ff994d196/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-xwqb3gvf[/] 2025-09-08T01:56:04,265 [bold magenta]cwd[/]: /tmp/pip-wheel-ks1hz4ar/hmmerclust_0c6b9ff933464e5aab6dda2ff994d196/ 2025-09-08T01:56:04,266 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T01:56:04,267 ERROR: metadata generation failed 2025-09-08T01:56:04,273 Exception information: 2025-09-08T01:56:04,273 Traceback (most recent call last): 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T01:56:04,273 call_subprocess( 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~^ 2025-09-08T01:56:04,273 args, 2025-09-08T01:56:04,273 ^^^^^ 2025-09-08T01:56:04,273 ...<2 lines>... 2025-09-08T01:56:04,273 spinner=spinner, 2025-09-08T01:56:04,273 ^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 ) 2025-09-08T01:56:04,273 ^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T01:56:04,273 raise error 2025-09-08T01:56:04,273 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T01:56:04,273 2025-09-08T01:56:04,273 The above exception was the direct cause of the following exception: 2025-09-08T01:56:04,273 2025-09-08T01:56:04,273 Traceback (most recent call last): 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T01:56:04,273 status = _inner_run() 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T01:56:04,273 return self.run(options, args) 2025-09-08T01:56:04,273 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T01:56:04,273 return func(self, options, args) 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T01:56:04,273 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T01:56:04,273 result = self._result = resolver.resolve( 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~~^ 2025-09-08T01:56:04,273 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T01:56:04,273 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 ) 2025-09-08T01:56:04,273 ^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T01:56:04,273 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T01:56:04,273 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T01:56:04,273 if not criterion.candidates: 2025-09-08T01:56:04,273 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T01:56:04,273 return bool(self._sequence) 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T01:56:04,273 self._bool = any(self) 2025-09-08T01:56:04,273 ~~~^^^^^^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T01:56:04,273 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T01:56:04,273 ^^^^^^^^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T01:56:04,273 candidate = func() 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T01:56:04,273 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T01:56:04,273 link, template, name, version 2025-09-08T01:56:04,273 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 ) 2025-09-08T01:56:04,273 ^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T01:56:04,273 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~^ 2025-09-08T01:56:04,273 link, 2025-09-08T01:56:04,273 ^^^^^ 2025-09-08T01:56:04,273 ...<3 lines>... 2025-09-08T01:56:04,273 version=version, 2025-09-08T01:56:04,273 ^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 ) 2025-09-08T01:56:04,273 ^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T01:56:04,273 super().__init__( 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~~^ 2025-09-08T01:56:04,273 link=link, 2025-09-08T01:56:04,273 ^^^^^^^^^^ 2025-09-08T01:56:04,273 ...<4 lines>... 2025-09-08T01:56:04,273 version=version, 2025-09-08T01:56:04,273 ^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 ) 2025-09-08T01:56:04,273 ^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T01:56:04,273 self.dist = self._prepare() 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~^^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T01:56:04,273 dist = self._prepare_distribution() 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T01:56:04,273 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T01:56:04,273 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T01:56:04,273 dist = _get_prepared_distribution( 2025-09-08T01:56:04,273 req, 2025-09-08T01:56:04,273 ...<3 lines>... 2025-09-08T01:56:04,273 self.check_build_deps, 2025-09-08T01:56:04,273 ) 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T01:56:04,273 abstract_dist.prepare_distribution_metadata( 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T01:56:04,273 finder, build_isolation, check_build_deps 2025-09-08T01:56:04,273 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 ) 2025-09-08T01:56:04,273 ^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T01:56:04,273 self.req.prepare_metadata() 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T01:56:04,273 self.metadata_directory = generate_metadata_legacy( 2025-09-08T01:56:04,273 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T01:56:04,273 build_env=self.build_env, 2025-09-08T01:56:04,273 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 ...<3 lines>... 2025-09-08T01:56:04,273 details=details, 2025-09-08T01:56:04,273 ^^^^^^^^^^^^^^^^ 2025-09-08T01:56:04,273 ) 2025-09-08T01:56:04,273 ^ 2025-09-08T01:56:04,273 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T01:56:04,273 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T01:56:04,273 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T01:56:04,296 Removed hmmerclust==0.0.1.dev3 from https://files.pythonhosted.org/packages/5c/5d/47dc4e03b1ae405dc8a3d8637d1f47627b3e04a33f74da5303f5f4547431/hmmerclust-0.0.1.dev3.tar.gz from build tracker '/tmp/pip-build-tracker-6wo3skno' 2025-09-08T01:56:04,297 Removed build tracker: '/tmp/pip-build-tracker-6wo3skno'