2025-09-08T01:33:32,156 Created temporary directory: /tmp/pip-build-tracker-lt8801yx
2025-09-08T01:33:32,157 Initialized build tracking at /tmp/pip-build-tracker-lt8801yx
2025-09-08T01:33:32,157 Created build tracker: /tmp/pip-build-tracker-lt8801yx
2025-09-08T01:33:32,157 Entered build tracker: /tmp/pip-build-tracker-lt8801yx
2025-09-08T01:33:32,157 Created temporary directory: /tmp/pip-wheel-ug8xrpre
2025-09-08T01:33:32,160 Created temporary directory: /tmp/pip-ephem-wheel-cache-bpxl7zfv
2025-09-08T01:33:32,215 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T01:33:32,218 2 location(s) to search for versions of python-libsbml:
2025-09-08T01:33:32,218 * https://pypi.org/simple/python-libsbml/
2025-09-08T01:33:32,218 * https://www.piwheels.org/simple/python-libsbml/
2025-09-08T01:33:32,218 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2025-09-08T01:33:32,218 Getting page https://pypi.org/simple/python-libsbml/
2025-09-08T01:33:32,219 Found index url https://pypi.org/simple/
2025-09-08T01:33:32,390 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2025-09-08T01:33:32,467   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2025-09-08T01:33:32,468   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2025-09-08T01:33:32,468   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2025-09-08T01:33:32,468   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2025-09-08T01:33:32,469   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2025-09-08T01:33:32,469   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,469   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2025-09-08T01:33:32,469   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,469   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,470   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,470   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,470   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,470   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,470   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,470   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,471   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,471   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,471   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,471   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,471   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,471   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,471   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,471   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,472   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,472   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,472   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,472   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,472   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,472   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,472   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,473   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,473   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,473   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,473   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,473   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,473   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,473   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,474   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,474   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,474   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,474   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,474   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2025-09-08T01:33:32,474   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,474   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,475   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2025-09-08T01:33:32,475   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,475   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,475   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,475   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,475   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,476   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,476   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,476   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,476   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,476   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,476   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,476   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,477   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,477   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,477   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,477   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,477   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,477   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,477   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,478   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,478   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,478   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,478   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,478   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,478   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,478   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,479   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,479   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2025-09-08T01:33:32,479   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,479   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,479   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,479   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,479   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,480   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,480   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,480   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,480   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,480   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,480   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,480   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,481   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,481   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,481   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,481   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,481   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,481   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,481   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,482   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,482   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,482   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,482   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,482   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2025-09-08T01:33:32,482   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,482   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,483   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,483   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,483   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,483   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,483   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,483   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,483   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,484   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,484   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,484   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,484   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,484   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,484   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,484   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,484   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,485   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,485   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,485   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,485   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,485   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2025-09-08T01:33:32,485   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,485   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,486   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,486   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,486   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,486   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,486   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,486   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,486   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,487   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,487   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,487   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,487   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,487   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,487   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,487   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,488   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,488   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,488   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,488   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,488   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,488   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,488   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,488   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,489   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,489   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,489   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,489   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,489   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,489   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,489   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,490   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,490   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,490   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,490   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,490   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,490   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,490   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,491   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,491   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,491   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2025-09-08T01:33:32,491   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,491   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,491   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,491   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,492   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,492   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,492   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,492   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,492   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,492   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,492   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,493   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,493   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,493   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,493   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,493   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,493   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,493   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,494   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,494   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,494   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,494   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,494   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,494   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,494   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,494   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,495   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,495   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,495   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,495   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,495   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,495   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2025-09-08T01:33:32,496   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,496   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,496   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,496   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,496   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,496   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,496   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,496   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,497   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,497   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,497   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,497   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,497   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,497   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,497   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,498   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,498   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,498   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,498   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,498   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,498   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,498   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,499   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,499   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,499   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,499   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,499   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,499   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,499   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,499   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,500   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,500   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,500   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,500   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,500   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,500   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,500   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,501   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,501   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,501   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,501   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,501   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,501   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,501   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,502   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,502   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,502   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,502   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,502   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,502   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,502   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,502   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,503   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,503   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,503   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,503   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,503   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,503   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,503   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,504   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,504   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,504   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,504   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,504   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,504   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,504   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,504   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,505   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,505   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,505   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,505   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,505   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,505   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,505   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,506   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,506   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,506   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,506   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,506   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,506   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,506   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,507   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,507   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,507   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,507   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,507   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,507   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,507   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,507   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,508   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,508   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,508   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,508   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,508   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,508   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,508   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,509   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,509   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,509   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,509   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,509   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,509   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,509   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,509   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,510   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,510   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,510   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,510   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,510   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,510   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,510   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,511   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,511   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,511   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,511   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,511   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,511   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,511   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,511   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,512   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,512   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,512   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,512   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,512   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,512   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,512   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,513   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,513   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,513   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,513   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,513   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,513   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,513   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,514   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,514   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,514   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,514   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,514   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,514   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,514   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,514   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,515   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,515   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,515   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,515   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,515   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,515   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,515   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,516   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,516   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,516   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,516   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,516   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,516   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,516   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2025-09-08T01:33:32,517   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,517   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,517   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,517   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,517   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,517   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,517   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,518   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,518   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,518   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,518   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,518   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,518   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,518   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,520   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,520   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,520   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,520   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,520   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,520   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,520   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,521   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,521   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,521   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,521   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,521   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,521   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,521   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,523   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,523   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,523   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,523   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,523   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2025-09-08T01:33:32,523   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,524   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,524   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,524   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,524   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,524   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,524   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,524   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,526   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,526   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,526   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,526   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,526   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,526   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,527   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,527   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,527   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,527   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,527   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,527   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,527   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,529   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,529   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,529   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,529   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,529   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,529   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,529   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,530   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,530   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,530   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,530   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,530   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2025-09-08T01:33:32,530   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,532   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,532   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,532   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,532   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,532   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,532   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,532   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,533   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,533   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,533   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,533   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,533   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,533   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,533   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,534   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,534   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,534   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,534   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,534   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,534   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,534   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,534   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,535   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,535   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,535   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,535   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,535   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,535   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,535   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,536   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,536   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,536   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,536   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,536   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,536   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,536   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,537   Found link https://files.pythonhosted.org/packages/b5/47/7a6063cb8de95b786a93ad3cef3760a72ca2f344db333c1694b7abd228b7/python-libsbml-5.20.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.2
2025-09-08T01:33:32,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/04/26903a22496521f7d74ba196d9cc5657ed9349c68deb29766081d9e50414/python_libsbml-5.20.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3d/45/98defd138e1901f301b49dd88290617a1d9d9d0e8e595ab515380429773a/python_libsbml-5.20.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/c6/2e18caa75409aa36d434f9d166f8624d9b7b8be63f959a9598bffa504e3d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/8f/2e6b389d653ab757abc10231f6e31f842fc3443c03429243d583134a88b6/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/7f/6788f019fd747df56978e3e76a871541e1986fc32fbad7f9b2d1a044125d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/91/dabd7be439071b41738e023671cefb6585bc5c5c87412462355615d51529/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/53/ac/3a753b37ce8d257b7d15d011368b99595a533d409c6d1e576d8b2e4e95f0/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/3a/f45a1ce0190e30a3445cf8084e127f09607746dc1ae6af1897a33bfacaac/python_libsbml-5.20.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/9991bb8e94f9bdec1429634355471845a6a3dd1cd87ef25b414c8e6f4525/python_libsbml-5.20.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/3f/61a99c450a4cce58ac209f73489a899d771e575a0cd4c78af239d087d51a/python_libsbml-5.20.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/76/be1c1d1d631048857c1251385f1ea4e98434ac51292df86bfefc95c75f31/python_libsbml-5.20.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/63/d668630e42dacce62517fd5e12f220813057a29e50fca69d9009fac89332/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/74/e38a3ff2e270458108a7ff73df4017320634ba58af0dce728f74910bddc0/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/65/0040257a7dac93d053643baa798919df5368c19b661699e03a11897ab5f9/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/57/0e/650eb72f69d0d77b11bb85bf5f533ab8561910fd263cab7ba1bc08a2fc5e/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c5/3ac9cf395c7ff268eebc649dd0a8d540772c5ab516e2ac9fc45cad43f8b7/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/e5/331030fb11adce42e0920dd66451dbd78794d53bc4d3b4bb42e88f59d78b/python_libsbml-5.20.2-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/45/d6188b56f4928a1ba7a1f55ee0153ab7e8b03f4538a6235c2cd95a3d1a07/python_libsbml-5.20.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,540   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/22/58/3e9ffea465efca2b604e3d9a05e599d4bf3034f9bed3a11647821e1281b0/python_libsbml-5.20.2-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,540   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ed/7c/07e507837f43eeffc97b7a3d0e2f975c53455cbdfbf75ab0a207ae286173/python_libsbml-5.20.2-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,540   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/db/96d432ed90795b06677cb2fb1173ada6af6bb8b490889994edfb7d459484/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,540   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/72/6d50597e242f809325d800e5298f914b1502f005f9250f5ed1924b91201d/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,540   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/51/c34bb7e4cf57e935b245769fe43953b10e8275a5254964bd77c6c24a2909/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,540   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/92/6705ad6d9f565efcc903f2e05c525fab20e041637d58789e64e75ce554f4/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,540   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/3e/f4e038e6eda9583dbc301655feca81fffe7e47d2472d1aa3994ced906fcf/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,541   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/05/19694615bdbce9662022a7e4cb1c9a32827e2b6333369d82fc229b570be4/python_libsbml-5.20.2-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,541   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/dc/ce7fd468c172856d691c02cabd70869fd0cf096ef27514b1926a4f985006/python_libsbml-5.20.2-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,541   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/74/218dd9f207049d9bc314f4e721edac2b542a73275db7acf599372086152a/python_libsbml-5.20.2-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,541   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/3b/08a0aea25adae6be135f663849c3877fc7766501ee7b0f2765699b9c6661/python_libsbml-5.20.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,541   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e6/1b/d623d8731b75797ac27d51a408f785b84b1fef320b0bf25cbe5e156dc53b/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,541   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/fe/f1df672a5ee732cd2d137672d2deafe97c0677670e928d4c225071f8c079/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,541   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/da/3631b93a3326fe174ee1507d113a4f3b5d3e62ebe5d717ddadb2725c726d/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,542   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/56/c6cdf2f7913be720110279b1c1c0f12fdc8ddf1b4494798d35ba78afe0b5/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,542   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/95/e3b6b579c4942a6f2e476454cc18c3f8bd703eac1741aed2e8d1a000d892/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,542   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/6f/c1e9afda82db0e6243e9e11c95a2e8276e59669b129cffc1e788b56baac4/python_libsbml-5.20.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,542   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/88/bb18a417cafaffecf7545454eaf8d66ea505b050146780d04584429d09ef/python_libsbml-5.20.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,542   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/c8/350c41479d55ba7faa7684a47470aad4d7a64187e13fffb63bdf64f1c6b1/python_libsbml-5.20.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,542   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fa/28/920e87bd0ac86ce4fa39405e04531b5aef65e81bd2692cf6d32d74ab1f6e/python_libsbml-5.20.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,542   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/52/34006a61844de53a1343e6424bcbfbfba7a69ecf604e298b09719cf3f776/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/51/06c2893ae9924ab7ab969438354397180c15517381e2407ffeee01f2ffd1/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/a8/f692640f8dd26dd80b5b1e52d35288cd66dce3aef45ce33389b4908b8a96/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/9a/a23ed03cc9843587c159ed7dfe87a0fc5981620a8c4239d0b7cb5d1ced3d/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/dd/5ba423e743e6a1248f7a260addd96ae0ed8877a9d3fc673cc9fc04d1e583/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/2e/1aa54758d80c73dcad2ac7be72f94c2e6a80231e41cc4f181e756c312ff8/python_libsbml-5.20.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/e9/3aa778c48058f73596a284c9da221edb0f4064fd0c6718c5a2b090376291/python_libsbml-5.20.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/3e/40f8ddd356ac0da9d7a68f7e76fe2d1f1b6e493ac1d7d84e85c7db0a5151/python_libsbml-5.20.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/8e/412f7feb28529a9d74f2f268d19e339215453b2ddc403fa722543327e9c4/python_libsbml-5.20.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/c1/b6224136f86d061d660706b6baff0aca9c5b93b9065b27ce5e60679b8c32/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/a9/d826781ff9cba1fc25819f0b0784190fb0aed6cedd017f6d275203fa9f20/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/d6/f81f1223273281bf4926750f7ffe3ce8e4b7b6b03456fe9fe40e1d48ce9f/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/78/bcbfa20734ed0b28b76f9237f4ff8fc786d8e97d43d402bcb06e39f3d7e9/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/f0/8a9d7920dce46184777baa3b5b368ebf09de0a6c4408def6d33797aff2fc/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/36/4df59c750ded7484a98b90b3265d884b993c1eb636c394885c5fdaa54c88/python_libsbml-5.20.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/65/9dae381f8856cd9bc8b84282ce79179a410ae56468120935b592168425f0/python_libsbml-5.20.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/c7/e8b736a73a77b9f445bf4ab3d21e944f5c3b9fe09b4e13545458bfa3032f/python_libsbml-5.20.2-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/94/991c7ca6a639d5dde00928ed1b1be8afeba72c1afd54b229f47b55bbfab9/python_libsbml-5.20.2-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/fc/79e5a26756c3e7d93085b18d2cc4dcf6aa083a3bd9a6929829ee0dc2fd53/python_libsbml-5.20.2-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/c1/1cc74cd93fdd9a80f280fed49ac11860d493cf0b00f5ae423dec0c56ed55/python_libsbml-5.20.2-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/16/ca/572dd53742081b13f59f57a4f114d6fd32ee177cf7cff45eadc38b26e70e/python_libsbml-5.20.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/16/b92b5d1607b08b29df6636cef1d3d0c4e6ab0a7af8abc858e6564c1750a4/python_libsbml-5.20.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/14/60557f93f37dbdd0a58796e0fd832b6cc3e8194caaadc7a4e78d83ef15e6/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/91/968a70814dceb1a1002c313ac80de94c6515c6ed9d580d569371581ec549/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/3f/b7bb4c06c4de558a71117a18d5e59f30f0719e43244c7e0e9010370eff11/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/33/78752be98d7cb891266d15758057efc3ac392ffa5203a2947506fa15856f/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/20/429e411767983fd38d520470acf8c34d08299d25bf05e6456210796256a3/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/0f/558289f95919730d7e341337b14d880c89912277550f03a3f78e585706b3/python_libsbml-5.20.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/5a/f435f7a12f11f1cc8cf505452814f21cde6ef6d8e2f75a4a323ab47bd0da/python_libsbml-5.20.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/5a/9b2d31a91f5e94ff44bca259fb8ea57dab7e2cadd66d54888dedbd7efdb7/python_libsbml-5.20.4-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/e4/79a57f56cc0fcb9ccf74a480a2102a5b91109958fbd830f92c2e6435e905/python_libsbml-5.20.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/a7/18dbc2129f0187cb00404de81ff51fd7a907a11dedfed28c10d3b03eac32/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/91/53c5c6a005eb529fc844ef5cc6f079cd85070d2a2e96227cd3644eceec88/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/4b/f11aab01f1483ca770ef7af61a41005a1fc5a3b1004c097b0a92e7046e61/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/7f/57e791cf4495ba2e8e07386ee070373eb925cbb7ffb80f4dc2db42e1f7ac/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/13/a97e56c822875a7ea616277e1801e2bea3f536ecbb292297cf947bb11bee/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/24/53784997e5bae3def9e6279fdc71c70c59e4efeea8a31adce5816778d2e1/python_libsbml-5.20.4-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/15/bd/6838154413a83a8f6dc5b60bafd80ba73f1554c47c99f39cfe958c64d907/python_libsbml-5.20.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/6c/43a8b4e49ac8885d9a9ae856c8a442864d987a40e82b32358ea718a75441/python_libsbml-5.20.4-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4d/3bad65cbb54ba14d5d983874d47d2352efe6f45cd737573d64d6091980ba/python_libsbml-5.20.4-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/db/3f9f75d42106144df9cec628a4c9f24a024256372f7155f24f4608932c14/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/0a/a0ac99ea56235166b5441bd9c605fbbfa5130f8611a725da6368d628d4a4/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/d3/9db568a391f82ec47da42ae557f3e429acfee6364b205a06ae2ccb602af1/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/b2/3dae1e7f2d5742f1b9aae565aea55d2a978059c324a891a9bfd921b75024/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/48/79f5737c66329717f1c98f7ffad4af5bcf053477ef76f4e65c71b20c573e/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/28/b5049445492235606844c1d8e88317bd0545417ce1c268a4c34f98946d3a/python_libsbml-5.20.4-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/ee/4bbb01a4c7ce916fc2f26d836aa5aa0e3a90f9e526f8d6effefdf06079bc/python_libsbml-5.20.4-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/25/ec5b2921781757dbfc030f6b4502580662e156223f1358676858a27cf9b9/python_libsbml-5.20.4-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/28/cbd7a16304666555af50adafceb85796c633fecee649e72f2fef8b34d296/python_libsbml-5.20.4-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7c/1db267adce246d8b18d46d80a4cd4efb8ee0f56eb25d42e4a4a27474166c/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/78/5dd03cddfaa1a2ed43b32b984135b8fe0469835eaaf3a432224fc2347862/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5c/c4/800ff7ccb91390d67eca1bf4e5fd479f201e849bd4ac6aee39782f395127/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/ac/d6607f3ce489b82b4a51f86172b48ae6c4d8f278fa46fd4117fffe6097c0/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/17/0a4504d7851a8b6ad704148e72e00d4fcd8172a7e4b02b09f521632ceb35/python_libsbml-5.20.4-cp313-cp313-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/80/bf/e94a0cee6f9c9413d070b4285ba055a44e8b912426fed66fb0bb26ab0818/python_libsbml-5.20.4-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/a7/7f319330d9eabacbf32b0ed9bde3f8387088548f62756b4d14048c830ffe/python_libsbml-5.20.4-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/ac/a5fba140496a4c18259ceaa81c3292a139d626a791f9c621cd733f64f727/python_libsbml-5.20.4-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/ee/ee8fb79daf7133def31a34eb5efe53205924b5b9c640d4febbff1fe6ca64/python_libsbml-5.20.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/c7/1a6998b0cee736c2380345bdc27ae2bd8840c806cb36833028667a3b2605/python_libsbml-5.20.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/68/24d9b592da6a5416c533c659d208fed08ddcc10b442b1d1d2ee270a915aa/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,551   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/1d/75a7565e1af082e72b7a63fa4f186600a297ece167db2360627ebb71193a/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,551   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/6b/b1ee160b127ca459beb2fcf51285208fc223bcc40b1bc6ac43879352d632/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,551   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/62/f0c26ed535543f6bfb205e87e4418c3c37c12d7825fd30f247f0132f08a3/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,551   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/e6/d8f7554548e6fa79691301726fc9d6c3e0eedadbfb65992e1d917ab4b4f2/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,551   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/0d/686219eb0c02627571575cc73eb46dcfd1c9a43bd97fae491da105aa84a3/python_libsbml-5.20.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,551   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/5f/92323c94c8a96c498eca5673aa39228f48984a5f5443d887a86ceb9a2e62/python_libsbml-5.20.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,551   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/94/47/c55da9ac26a7992f720000338f92b8eeb87c50fced41eb7cf56a6e9b4c67/python_libsbml-5.20.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f7/e7af5fa8941eeef5883eab1c6dc241f58950715c72f793e4d89f04cb51b0/python_libsbml-5.20.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/d1/32b0f68766364b51adcf147717b4f56f374df7ae78a08436e8719f6df888/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/be/10f32360a55cb8b1395b2ba26476455cec3a870b518eb0d910e277f20fc8/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c9/5e56a08bf385080b9a9a1b8e41eb04c4a4bd649a7f6eb46dc5f72c8db420/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/64/f8404da7ba27cb4905df4713048e8194a9c711c7dae312d33b2b3a821bd6/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e8/10/ff8ab1d3a721b60827124c14f5252b7d332f3351c1e517ca4d429f1ba4c2/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/dd/659e49b36e545bdecdc3394aae0a51d55655fb7e6a5e122eb417e2ea17ea/python_libsbml-5.20.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/f4/93b12b7433288cd57c91d66401cc029fed14163b47753fdeecb7b9ec72e8/python_libsbml-5.20.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,553   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/39/85ff81ad6a098f069e6680accd97659d02efc62c32a81416717e65c00f09/python_libsbml-5.20.4-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,553   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/be/910bbd6c0c8669be8df6764bee0e6c39729c0ab6212834ecf68d24ea5be8/python_libsbml-5.20.4-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,553   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/db/7cb8f4a9d6e4d6a96072df1f409414d5628f0aa58dc91a45c601e3d711f1/python_libsbml-5.20.4-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,553   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/38/2d9c53cd3e4f3d2bb3e0dbea03ec7ec9de4507ba6e5ce73b1982e858298f/python_libsbml-5.20.4-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,553   Found link https://files.pythonhosted.org/packages/5d/74/1bf1b9883de7bc928e1727e4502c690ec09a8f7b9f2d53edb8fa452d23c3/python_libsbml-5.20.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.4
2025-09-08T01:33:32,553   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/56/40b610acdbde447a90b91503c81d5cc591dec29815cd427a26280fad5c84/python_libsbml-5.20.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/72/96520783019f16ec6b0189b66ea8fea7f43d11c269feaf68c42fd6c79500/python_libsbml-5.20.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e1/9f/66466d20861c14bdc18fc393bb065da7da9e0a3972b5533557f956ac1d0c/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/36/a1e96927d948b9d5bc1b3e57ea6154677c06e234ad190a2f726c331465c8/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/51/da98b3adc80c3d89a9b997b16d4a6448207d26e15c99bf464c4decbe852a/python_libsbml-5.20.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/ef/d44ea1ff0042439c29cc864c353e1ca9a062a753d5e8288ca6e6e4ba853c/python_libsbml-5.20.5-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/66/d5fc713d4a369d17522e3816be5234289cd27fc731c112ce698387382d89/python_libsbml-5.20.5-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/3f/199d494311da757de5a94404e88a0c6bbae99e64865c98dcf415b03d595a/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/17/7f1f0ad2f3b0054d1e762b6cbdd25153fd904135ce07561b0fd79dd83d90/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/a5/ef3cdd88c805181ed3da79a9ec85ee707872bacb7bc1cbc736efa9c3cd78/python_libsbml-5.20.5-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/d6/269bd9d7dfb69025e98c7afe2285a9c6d66b980209bbdbd54ffd995c592f/python_libsbml-5.20.5-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/c0/3ba180b1d18c5d1427e3772fa1402f72ce6edaac345e4aab14af61f50916/python_libsbml-5.20.5-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/7f/59669e43e75428a6e740bb11bf40f0a5f4afc7a6604f7071560dd1f7fab3/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/02/696c5a0dc72a3949224207534219afe54951381f2ad4ee1df5e03833edbe/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/68/528c874841022d90fc93854197d327aab7c65b36c8a8d954a5280e9520b4/python_libsbml-5.20.5-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/8f/e98feeb2d0a6ef95716123cb808b25723dabbcde5d0f555e89360be1d8d6/python_libsbml-5.20.5-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/45/2e64419d50428b67a7592850121afee11f83448781506bbc389f737c2597/python_libsbml-5.20.5-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/8f/3e211bbdaf69ca0c789530353cdf02711f95e70ac8581a08ce0c45903c80/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/92/a8a86812776326ffdfac6c5addc7581f6399f7b825b31dd90e211f63739f/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/49/70f6288db3ce3ef006627318d518235836c47b34e4aa7716760e33b639b9/python_libsbml-5.20.5-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/ed/28754b6c5043e55437f0175dd5f4132ff8ace0af32040c129f564ba88fe8/python_libsbml-5.20.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f2/678c5dd13f67c229c5a4edd57fefaa653311bb2bfeaf47ed02e9671af61f/python_libsbml-5.20.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/92/41/c0d5007db0988a242562f8ef8cf303302c70497effda82c6459dce4b600c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,557   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2c/5d/bb31237034edc0654363ce7e0d667cb0303da88def3083ad538b03cdee7c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,557   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/d2/c0d8c2166310a5c6fb201c05f9817fc66f17bbb3d70bde3faae15016eec1/python_libsbml-5.20.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T01:33:32,557   Found link https://files.pythonhosted.org/packages/5d/4b/b49fe7384cc9e727e88c58713edc3b4a1c469673937d8d31cafe23261120/python_libsbml-5.20.5.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.5
2025-09-08T01:33:32,557 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2025-09-08T01:33:32,558 Getting page https://www.piwheels.org/simple/python-libsbml/
2025-09-08T01:33:32,558 Found index url https://www.piwheels.org/simple/
2025-09-08T01:33:32,642 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2025-09-08T01:33:32,661   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,661   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv7l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,661   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv6l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,661   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv7l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,662   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp311-cp311-linux_armv6l.whl#sha256=4faec8be0d9c1f8accb40055cbf08bb3f266b740242ce421e848f1de997d87db (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,662   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp311-cp311-linux_armv7l.whl#sha256=4faec8be0d9c1f8accb40055cbf08bb3f266b740242ce421e848f1de997d87db (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,662   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv6l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,662   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv7l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,662   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv6l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,662   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv7l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,662   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,663   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv7l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,663   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv6l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,663   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv7l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,663   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv6l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,663   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv7l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,663   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv6l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,663   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv7l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,664   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv6l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,664   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv7l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,664   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv7l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,664   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv6l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,664   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv7l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,664   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv6l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,664   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv6l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,665   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv7l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,665   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv6l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,665   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv7l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,665   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv6l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,665   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv7l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,665   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv7l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,665   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv6l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,665   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp311-cp311-linux_armv6l.whl#sha256=99f3bc173559c37c1f788969eb598026cafc9e944158e2023b737c9101dfcafa (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,666   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp311-cp311-linux_armv7l.whl#sha256=99f3bc173559c37c1f788969eb598026cafc9e944158e2023b737c9101dfcafa (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,666   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp39-cp39-linux_armv6l.whl#sha256=03f09a2a301fb92a748c27cfaca2c913aa216f5b77f0d6615cc6261c06a5b8f1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,666   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp39-cp39-linux_armv7l.whl#sha256=03f09a2a301fb92a748c27cfaca2c913aa216f5b77f0d6615cc6261c06a5b8f1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,666   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,666   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,666   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv6l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,666   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv7l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,667   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp311-cp311-linux_armv6l.whl#sha256=fd840f49adf057ea4cb0cf91aa5289ecaf17045a69d326cded46d006149ea6f6 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,667   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp311-cp311-linux_armv7l.whl#sha256=fd840f49adf057ea4cb0cf91aa5289ecaf17045a69d326cded46d006149ea6f6 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,667   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,667   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,667   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv6l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,667   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,667   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,668   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,668   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,668   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,668   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,668   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,668   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv6l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,668   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv7l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,668   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv6l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,669   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,669   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,669   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,669   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,669   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,669   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv6l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,669   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv7l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,669   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,670   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,670   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,670   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,670   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,670   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,670   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv6l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,670   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,671   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,671   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,671   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp313-cp313-linux_armv6l.whl#sha256=4116db01590acb483d09a7db34dd504438979b6ecb01749ea563f941a41973c9 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,671   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp313-cp313-linux_armv7l.whl#sha256=4116db01590acb483d09a7db34dd504438979b6ecb01749ea563f941a41973c9 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,671   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,671   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,671   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,672   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,672   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv6l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,672   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv7l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,672   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,672   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,672   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp313-cp313-linux_armv6l.whl#sha256=6bff6959ed7c7720928e60e4bf6c80864e16dd558367d38f266ca4c633177080 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,672   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp313-cp313-linux_armv7l.whl#sha256=6bff6959ed7c7720928e60e4bf6c80864e16dd558367d38f266ca4c633177080 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,672   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,673   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,673   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,673   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,673   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv6l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,673   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv7l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,673   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,673   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T01:33:32,674 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2025-09-08T01:33:32,674 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2025-09-08T01:33:32,698 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2025-09-08T01:33:32,700 Collecting python-libsbml==5.11.4
2025-09-08T01:33:32,701   Created temporary directory: /tmp/pip-unpack-qtsofs6z
2025-09-08T01:33:32,947   Downloading python-libsbml-5.11.4.tar.gz (3.6 MB)
2025-09-08T01:33:34,421   Added python-libsbml==5.11.4 from https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz to build tracker '/tmp/pip-build-tracker-lt8801yx'
2025-09-08T01:33:34,422   Running setup.py (path:/tmp/pip-wheel-ug8xrpre/python-libsbml_13f34a31e6ef446aa04dfcc86e87036f/setup.py) egg_info for package python-libsbml
2025-09-08T01:33:34,422   Created temporary directory: /tmp/pip-pip-egg-info-teo_3hwo
2025-09-08T01:33:34,423   Preparing metadata (setup.py): started
2025-09-08T01:33:34,423   Running command python setup.py egg_info
2025-09-08T01:33:34,942   /tmp/pip-wheel-ug8xrpre/python-libsbml_13f34a31e6ef446aa04dfcc86e87036f/setup.py:78: SyntaxWarning: invalid escape sequence '\D'
2025-09-08T01:33:34,942     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-08T01:33:36,030   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T01:33:36,034   Source in /tmp/pip-wheel-ug8xrpre/python-libsbml_13f34a31e6ef446aa04dfcc86e87036f has version 5.11.4, which satisfies requirement python-libsbml==5.11.4 from https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz
2025-09-08T01:33:36,034   Removed python-libsbml==5.11.4 from https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz from build tracker '/tmp/pip-build-tracker-lt8801yx'
2025-09-08T01:33:36,037 Created temporary directory: /tmp/pip-unpack-zeeulgcl
2025-09-08T01:33:36,037 Created temporary directory: /tmp/pip-unpack-9fgme2ii
2025-09-08T01:33:36,037 Building wheels for collected packages: python-libsbml
2025-09-08T01:33:36,039   Created temporary directory: /tmp/pip-wheel-0txcw07x
2025-09-08T01:33:36,039   DEPRECATION: Building 'python-libsbml' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'python-libsbml'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T01:33:36,040   Building wheel for python-libsbml (setup.py): started
2025-09-08T01:33:36,041   Destination directory: /tmp/pip-wheel-0txcw07x
2025-09-08T01:33:36,041   Running command python setup.py bdist_wheel
2025-09-08T01:33:36,553   /tmp/pip-wheel-ug8xrpre/python-libsbml_13f34a31e6ef446aa04dfcc86e87036f/setup.py:78: SyntaxWarning: invalid escape sequence '\D'
2025-09-08T01:33:36,553     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-08T01:33:41,712   ./base/libsbml_wrap.cpp:3179:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:41,713    3179 |     UnknownExceptionHandler(std::unexpected_handler nh = handler) {
2025-09-08T01:33:41,713         |                                                                 ^
2025-09-08T01:33:41,719   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2025-09-08T01:33:41,719   ./base/libsbml_wrap.cpp:3180:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:41,719    3180 |       old = std::set_unexpected(nh);
2025-09-08T01:33:41,719         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:33:41,720   In file included from /usr/include/c++/14/ios:41,
2025-09-08T01:33:41,720                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:33:41,720                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:33:41,720                    from ./base/libsbml_wrap.cpp:2949:
2025-09-08T01:33:41,720   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-08T01:33:41,720      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-08T01:33:41,720         |                      ^~~~~~~~~~~~~~
2025-09-08T01:33:41,721   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2025-09-08T01:33:41,721   ./base/libsbml_wrap.cpp:3184:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:41,721    3184 |       std::set_unexpected(old);
2025-09-08T01:33:41,721         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:33:41,721   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-08T01:33:41,721      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-08T01:33:41,721         |                      ^~~~~~~~~~~~~~
2025-09-08T01:33:42,549   In file included from ./base/libsbml.h:45,
2025-09-08T01:33:42,549                    from ./base/libsbml_wrap.cpp:3748:
2025-09-08T01:33:42,549   ./base//sbml/ListOf.h: At global scope:
2025-09-08T01:33:42,549   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:42,549      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:33:42,549         |                           ^~~~~~~~~~~~~~
2025-09-08T01:33:42,549   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:33:42,549                    from ./base/libsbml_wrap.cpp:2948:
2025-09-08T01:33:42,550   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:33:42,550     117 |     struct unary_function
2025-09-08T01:33:42,550         |            ^~~~~~~~~~~~~~
2025-09-08T01:33:43,231   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:33:43,231                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T01:33:43,231                    from ./base/../swig/fbc-package.h:36,
2025-09-08T01:33:43,231                    from ./base/../swig/libsbml-packages.h:4,
2025-09-08T01:33:43,231                    from ./base/libsbml_wrap.cpp:3752:
2025-09-08T01:33:43,231   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:43,231     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:33:43,231         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:33:43,232   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:33:43,232     117 |     struct unary_function
2025-09-08T01:33:43,232         |            ^~~~~~~~~~~~~~
2025-09-08T01:33:43,238   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:43,238     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:33:43,238         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:33:43,238   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:33:43,238     117 |     struct unary_function
2025-09-08T01:33:43,238         |            ^~~~~~~~~~~~~~
2025-09-08T01:33:43,253   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T01:33:43,254   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:43,254     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:33:43,254         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:33:43,254   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:33:43,254     117 |     struct unary_function
2025-09-08T01:33:43,254         |            ^~~~~~~~~~~~~~
2025-09-08T01:33:43,276   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:33:43,277                    from ./base/../swig/layout-package.h:49,
2025-09-08T01:33:43,277                    from ./base/../swig/libsbml-packages.h:5:
2025-09-08T01:33:43,277   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:33:43,277     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:33:43,277         |                             ^~~~~~~~
2025-09-08T01:33:43,277   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:33:43,277     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:33:43,277         |                              ^~~~~~~~
2025-09-08T01:33:43,282   In file included from ./base//sbml/packages/layout/sbml/CubicBezier.h:55,
2025-09-08T01:33:43,283                    from ./base/../swig/layout-package.h:50:
2025-09-08T01:33:43,283   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:33:43,283     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T01:33:43,283         |                        ^~~~~~~~
2025-09-08T01:33:43,283   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T01:33:43,283     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T01:33:43,283         |                        ^~~~~~~~
2025-09-08T01:33:43,288   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:33:43,289     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:33:43,289         |                             ^~~~~~~~
2025-09-08T01:33:43,289   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T01:33:43,289                    from ./base/../swig/layout-package.h:54:
2025-09-08T01:33:43,289   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:33:43,289     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:33:43,289         |                          ^~~~~~~~
2025-09-08T01:33:43,292   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:33:43,292     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:33:43,292         |                             ^~~~~~~~
2025-09-08T01:33:43,292   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:33:43,292                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:33:43,292   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:33:43,292     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:33:43,292         |                                   ^~~~~~~~
2025-09-08T01:33:43,297   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:33:43,297     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:33:43,297         |                             ^~~~~~~~
2025-09-08T01:33:43,297   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:33:43,297     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:33:43,297         |                           ^~~~~~~~
2025-09-08T01:33:43,300   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:33:43,300     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:33:43,300         |                             ^~~~~~~~
2025-09-08T01:33:43,300   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:33:43,301   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:33:43,301     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:33:43,301         |                      ^~~~~~~~
2025-09-08T01:33:43,316   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:33:43,316     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:33:43,317         |                             ^~~~~~~~
2025-09-08T01:33:43,317   In file included from ./base/../swig/layout-package.h:57:
2025-09-08T01:33:43,317   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T01:33:43,317     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T01:33:43,317         |                            ^~~~~~~~
2025-09-08T01:33:43,322   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:33:43,322     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:33:43,322         |                             ^~~~~~~~
2025-09-08T01:33:43,322   In file included from ./base/../swig/layout-package.h:58:
2025-09-08T01:33:43,322   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T01:33:43,322     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T01:33:43,322         |                          ^~~~~~~~
2025-09-08T01:33:43,448   ./base/libsbml_wrap.cpp:4675:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:43,449    4675 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2025-09-08T01:33:43,449         |                                    ^~~~~~~~~~~~~~~
2025-09-08T01:33:43,449   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T01:33:43,449     131 |     struct binary_function
2025-09-08T01:33:43,449         |            ^~~~~~~~~~~~~~~
2025-09-08T01:33:43,452   ./base/libsbml_wrap.cpp:4700:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:43,453    4700 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2025-09-08T01:33:43,453         |                                                ^~~~~~~~~~~~~~~
2025-09-08T01:33:43,453   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T01:33:43,453     131 |     struct binary_function
2025-09-08T01:33:43,453         |            ^~~~~~~~~~~~~~~
2025-09-08T01:33:43,457   ./base/libsbml_wrap.cpp:4710:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:33:43,457    4710 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2025-09-08T01:33:43,457         |                                                ^~~~~~~~~~~~~~~
2025-09-08T01:33:43,458   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T01:33:43,458     131 |     struct binary_function
2025-09-08T01:33:43,458         |            ^~~~~~~~~~~~~~~
2025-09-08T01:39:18,701   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:39:18,701                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:39:18,701                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:39:18,701                    from ./base/sbml/AlgebraicRule.cpp:49:
2025-09-08T01:39:18,701   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:18,701      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:39:18,702         |                           ^~~~~~~~~~~~~~
2025-09-08T01:39:18,702   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:39:18,702                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:39:18,702                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:39:18,702                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:39:18,702                    from ./base/sbml/AlgebraicRule.cpp:34:
2025-09-08T01:39:18,702   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:18,702     117 |     struct unary_function
2025-09-08T01:39:18,702         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:18,952   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)’:
2025-09-08T01:39:18,952   ./base/sbml/AlgebraicRule.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:18,952     163 |   catch (SBMLConstructorException)
2025-09-08T01:39:18,952         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:18,953   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:39:18,953   ./base/sbml/AlgebraicRule.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:18,953     179 |   catch (SBMLConstructorException)
2025-09-08T01:39:18,953         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:22,586   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:39:22,587                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:39:22,587                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:39:22,587                    from ./base/sbml/AssignmentRule.cpp:49:
2025-09-08T01:39:22,587   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:22,587      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:39:22,587         |                           ^~~~~~~~~~~~~~
2025-09-08T01:39:22,588   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:39:22,588                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:39:22,588                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:39:22,588                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:39:22,588                    from ./base/sbml/AssignmentRule.cpp:34:
2025-09-08T01:39:22,589   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:22,589     117 |     struct unary_function
2025-09-08T01:39:22,589         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:22,837   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)’:
2025-09-08T01:39:22,837   ./base/sbml/AssignmentRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:22,837     154 |   catch (SBMLConstructorException)
2025-09-08T01:39:22,837         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:22,838   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:39:22,838   ./base/sbml/AssignmentRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:22,838     170 |   catch (SBMLConstructorException)
2025-09-08T01:39:22,838         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:26,596   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:39:26,596                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:39:26,596                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:39:26,596                    from ./base/sbml/Compartment.cpp:41:
2025-09-08T01:39:26,596   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:26,596      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:39:26,596         |                           ^~~~~~~~~~~~~~
2025-09-08T01:39:26,597   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:39:26,597                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:39:26,597                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:39:26,597                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:39:26,597                    from ./base/sbml/Compartment.cpp:35:
2025-09-08T01:39:26,597   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:26,597     117 |     struct unary_function
2025-09-08T01:39:26,597         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:26,831   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-08T01:39:26,831   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:39:26,831     146 |   if (&orig == NULL)
2025-09-08T01:39:26,831         |             ^
2025-09-08T01:39:26,831   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2025-09-08T01:39:26,832     143 | Compartment::Compartment(const Compartment& orig) :
2025-09-08T01:39:26,832         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:39:26,833   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-08T01:39:26,833   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:39:26,833     175 |   if (&rhs == NULL)
2025-09-08T01:39:26,834         |            ^
2025-09-08T01:39:26,834   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2025-09-08T01:39:26,834     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2025-09-08T01:39:26,834         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:26,840   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-08T01:39:26,840   ./base/sbml/Compartment.cpp:500:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:26,840     500 |   if (&(sid) == NULL)
2025-09-08T01:39:26,840         |              ^
2025-09-08T01:39:26,840   ./base/sbml/Compartment.cpp:489:40: note: ‘sid’ declared here
2025-09-08T01:39:26,840     489 | Compartment::setId (const std::string& sid)
2025-09-08T01:39:26,840         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:26,840   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-08T01:39:26,841   ./base/sbml/Compartment.cpp:525:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:39:26,841     525 |   if (&(name) == NULL)
2025-09-08T01:39:26,841         |               ^
2025-09-08T01:39:26,841   ./base/sbml/Compartment.cpp:520:42: note: ‘name’ declared here
2025-09-08T01:39:26,841     520 | Compartment::setName (const std::string& name)
2025-09-08T01:39:26,841         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:39:26,841   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-08T01:39:26,842   ./base/sbml/Compartment.cpp:555:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:26,842     555 |   if (&(sid) == NULL)
2025-09-08T01:39:26,842         |              ^
2025-09-08T01:39:26,842   ./base/sbml/Compartment.cpp:553:53: note: ‘sid’ declared here
2025-09-08T01:39:26,842     553 | Compartment::setCompartmentType (const std::string& sid)
2025-09-08T01:39:26,842         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:26,844   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-08T01:39:26,844   ./base/sbml/Compartment.cpp:677:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:26,844     677 |   if (&(sid) == NULL)
2025-09-08T01:39:26,844         |              ^
2025-09-08T01:39:26,845   ./base/sbml/Compartment.cpp:675:43: note: ‘sid’ declared here
2025-09-08T01:39:26,845     675 | Compartment::setUnits (const std::string& sid)
2025-09-08T01:39:26,845         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:26,845   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-08T01:39:26,845   ./base/sbml/Compartment.cpp:699:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:26,845     699 |   if (&(sid) == NULL)
2025-09-08T01:39:26,845         |              ^
2025-09-08T01:39:26,845   ./base/sbml/Compartment.cpp:697:45: note: ‘sid’ declared here
2025-09-08T01:39:26,845     697 | Compartment::setOutside (const std::string& sid)
2025-09-08T01:39:26,845         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:26,888   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-08T01:39:26,888   ./base/sbml/Compartment.cpp:1573:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:26,889    1573 |   if (&(sid) == NULL)
2025-09-08T01:39:26,889         |              ^
2025-09-08T01:39:26,889   ./base/sbml/Compartment.cpp:1569:45: note: ‘sid’ declared here
2025-09-08T01:39:26,889    1569 | ListOfCompartments::get (const std::string& sid) const
2025-09-08T01:39:26,889         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:26,892   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-08T01:39:26,892   ./base/sbml/Compartment.cpp:1601:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:26,892    1601 |   if (&(sid) != NULL)
2025-09-08T01:39:26,892         |              ^
2025-09-08T01:39:26,893   ./base/sbml/Compartment.cpp:1596:48: note: ‘sid’ declared here
2025-09-08T01:39:26,893    1596 | ListOfCompartments::remove (const std::string& sid)
2025-09-08T01:39:26,893         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:26,897   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2025-09-08T01:39:26,897   ./base/sbml/Compartment.cpp:1679:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:26,898    1679 |   catch (SBMLConstructorException)
2025-09-08T01:39:26,898         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:26,898   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:39:26,898   ./base/sbml/Compartment.cpp:1695:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:26,898    1695 |   catch (SBMLConstructorException)
2025-09-08T01:39:26,898         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:27,427   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-08T01:39:27,427   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:27,427     146 |   if (&orig == NULL)
2025-09-08T01:39:27,427         |   ^~
2025-09-08T01:39:27,427   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-08T01:39:27,427   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:27,427     175 |   if (&rhs == NULL)
2025-09-08T01:39:27,427         |   ^~
2025-09-08T01:39:27,430   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-08T01:39:27,430   ./base/sbml/Compartment.cpp:500:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:27,430     500 |   if (&(sid) == NULL)
2025-09-08T01:39:27,430         |   ^~
2025-09-08T01:39:27,430   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-08T01:39:27,431   ./base/sbml/Compartment.cpp:525:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:27,431     525 |   if (&(name) == NULL)
2025-09-08T01:39:27,431         |   ^~
2025-09-08T01:39:27,431   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-08T01:39:27,431   ./base/sbml/Compartment.cpp:555:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:27,431     555 |   if (&(sid) == NULL)
2025-09-08T01:39:27,431         |   ^~
2025-09-08T01:39:27,431   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-08T01:39:27,431   ./base/sbml/Compartment.cpp:677:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:27,432     677 |   if (&(sid) == NULL)
2025-09-08T01:39:27,432         |   ^~
2025-09-08T01:39:27,432   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-08T01:39:27,432   ./base/sbml/Compartment.cpp:699:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:27,432     699 |   if (&(sid) == NULL)
2025-09-08T01:39:27,432         |   ^~
2025-09-08T01:39:27,434   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-08T01:39:27,434   ./base/sbml/Compartment.cpp:1573:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:27,434    1573 |   if (&(sid) == NULL)
2025-09-08T01:39:27,435         |   ^~
2025-09-08T01:39:27,446   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-08T01:39:27,446   ./base/sbml/Compartment.cpp:1601:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:27,446    1601 |   if (&(sid) != NULL)
2025-09-08T01:39:27,446         |   ^~
2025-09-08T01:39:35,787   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:39:35,787                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:39:35,787                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:39:35,787                    from ./base/sbml/CompartmentType.cpp:40:
2025-09-08T01:39:35,787   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:35,788      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:39:35,788         |                           ^~~~~~~~~~~~~~
2025-09-08T01:39:35,788   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:39:35,788                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:39:35,788                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:39:35,788                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:39:35,788                    from ./base/sbml/CompartmentType.cpp:33:
2025-09-08T01:39:35,788   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:35,788     117 |     struct unary_function
2025-09-08T01:39:35,788         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:36,032   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-08T01:39:36,032   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:39:36,032      92 |   if (&orig == NULL)
2025-09-08T01:39:36,032         |             ^
2025-09-08T01:39:36,032   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2025-09-08T01:39:36,033      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2025-09-08T01:39:36,033         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:39:36,033   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-08T01:39:36,034   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:39:36,034     110 |   if (&rhs == NULL)
2025-09-08T01:39:36,034         |            ^
2025-09-08T01:39:36,034   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2025-09-08T01:39:36,034     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2025-09-08T01:39:36,034         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:36,037   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-08T01:39:36,038   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:36,038     207 |   if (&(sid) == NULL)
2025-09-08T01:39:36,038         |              ^
2025-09-08T01:39:36,038   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2025-09-08T01:39:36,038     196 | CompartmentType::setId (const std::string& sid)
2025-09-08T01:39:36,038         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:36,038   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-08T01:39:36,039   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:39:36,039     232 |   if (&(name) == NULL)
2025-09-08T01:39:36,039         |               ^
2025-09-08T01:39:36,039   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2025-09-08T01:39:36,039     227 | CompartmentType::setName (const std::string& name)
2025-09-08T01:39:36,039         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:39:36,049   ./base/sbml/CompartmentType.cpp: At global scope:
2025-09-08T01:39:36,050   ./base/sbml/CompartmentType.cpp:544:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:36,050     544 | struct IdEqCT : public unary_function<SBase*, bool>
2025-09-08T01:39:36,050         |                        ^~~~~~~~~~~~~~
2025-09-08T01:39:36,050   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:36,050     117 |     struct unary_function
2025-09-08T01:39:36,050         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:36,053   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-08T01:39:36,053   ./base/sbml/CompartmentType.cpp:569:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:36,053     569 |   if (&(sid) == NULL)
2025-09-08T01:39:36,053         |              ^
2025-09-08T01:39:36,054   ./base/sbml/CompartmentType.cpp:565:49: note: ‘sid’ declared here
2025-09-08T01:39:36,054     565 | ListOfCompartmentTypes::get (const std::string& sid) const
2025-09-08T01:39:36,054         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:36,057   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-08T01:39:36,057   ./base/sbml/CompartmentType.cpp:597:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:36,057     597 |   if (&(sid) != NULL)
2025-09-08T01:39:36,057         |              ^
2025-09-08T01:39:36,057   ./base/sbml/CompartmentType.cpp:592:52: note: ‘sid’ declared here
2025-09-08T01:39:36,057     592 | ListOfCompartmentTypes::remove (const std::string& sid)
2025-09-08T01:39:36,057         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:36,062   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2025-09-08T01:39:36,062   ./base/sbml/CompartmentType.cpp:675:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:36,062     675 |   catch (SBMLConstructorException)
2025-09-08T01:39:36,062         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:36,062   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:39:36,063   ./base/sbml/CompartmentType.cpp:691:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:36,063     691 |   catch (SBMLConstructorException)
2025-09-08T01:39:36,063         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:36,550   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-08T01:39:36,550   ./base/sbml/CompartmentType.cpp:569:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:36,551     569 |   if (&(sid) == NULL)
2025-09-08T01:39:36,551         |   ^~
2025-09-08T01:39:36,553   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-08T01:39:36,553   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:36,554      92 |   if (&orig == NULL)
2025-09-08T01:39:36,554         |   ^~
2025-09-08T01:39:36,554   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-08T01:39:36,554   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:36,554     110 |   if (&rhs == NULL)
2025-09-08T01:39:36,554         |   ^~
2025-09-08T01:39:36,556   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-08T01:39:36,556   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:36,556     207 |   if (&(sid) == NULL)
2025-09-08T01:39:36,556         |   ^~
2025-09-08T01:39:36,556   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-08T01:39:36,556   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:36,557     232 |   if (&(name) == NULL)
2025-09-08T01:39:36,557         |   ^~
2025-09-08T01:39:36,564   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-08T01:39:36,565   ./base/sbml/CompartmentType.cpp:597:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:36,565     597 |   if (&(sid) != NULL)
2025-09-08T01:39:36,565         |   ^~
2025-09-08T01:39:41,424   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:39:41,424                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:39:41,425                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:39:41,425                    from ./base/sbml/Constraint.cpp:43:
2025-09-08T01:39:41,425   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:41,425      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:39:41,425         |                           ^~~~~~~~~~~~~~
2025-09-08T01:39:41,426   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:39:41,426                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:39:41,426                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:39:41,426                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:39:41,426                    from ./base/sbml/Constraint.cpp:33:
2025-09-08T01:39:41,426   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:41,426     117 |     struct unary_function
2025-09-08T01:39:41,427         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:41,678   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-08T01:39:41,678   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:39:41,678     101 |   if (&orig == NULL)
2025-09-08T01:39:41,678         |             ^
2025-09-08T01:39:41,679   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2025-09-08T01:39:41,679      96 | Constraint::Constraint (const Constraint& orig) :
2025-09-08T01:39:41,679         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:39:41,681   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-08T01:39:41,681   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:39:41,681     122 |   if (&rhs == NULL)
2025-09-08T01:39:41,681         |            ^
2025-09-08T01:39:41,681   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2025-09-08T01:39:41,681     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2025-09-08T01:39:41,682         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:41,689   ./base/sbml/Constraint.cpp: In member function ‘int Constraint::setMessage(const std::string&, bool)’:
2025-09-08T01:39:41,689   ./base/sbml/Constraint.cpp:300:18: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2025-09-08T01:39:41,689     300 |   if (&(message) == NULL)
2025-09-08T01:39:41,689         |                  ^
2025-09-08T01:39:41,690   ./base/sbml/Constraint.cpp:296:44: note: ‘message’ declared here
2025-09-08T01:39:41,690     296 | Constraint::setMessage (const std::string& message,
2025-09-08T01:39:41,690         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:39:41,714   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2025-09-08T01:39:41,714   ./base/sbml/Constraint.cpp:878:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:41,714     878 |   catch (SBMLConstructorException)
2025-09-08T01:39:41,714         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:41,715   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:39:41,715   ./base/sbml/Constraint.cpp:894:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:41,715     894 |   catch (SBMLConstructorException)
2025-09-08T01:39:41,716         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:42,169   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-08T01:39:42,169   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:42,169     101 |   if (&orig == NULL)
2025-09-08T01:39:42,169         |   ^~
2025-09-08T01:39:42,170   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-08T01:39:42,170   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:42,170     122 |   if (&rhs == NULL)
2025-09-08T01:39:42,170         |   ^~
2025-09-08T01:39:42,181   ./base/sbml/Constraint.cpp: In member function ‘int Constraint::setMessage(const std::string&, bool)’:
2025-09-08T01:39:42,181   ./base/sbml/Constraint.cpp:300:3: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:42,181     300 |   if (&(message) == NULL)
2025-09-08T01:39:42,181         |   ^~
2025-09-08T01:39:46,790   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:39:46,790                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:39:46,790                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:39:46,790                    from ./base/sbml/Delay.cpp:45:
2025-09-08T01:39:46,790   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:46,790      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:39:46,790         |                           ^~~~~~~~~~~~~~
2025-09-08T01:39:46,791   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:39:46,791                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:39:46,791                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:39:46,791                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:39:46,791                    from ./base/sbml/Delay.cpp:33:
2025-09-08T01:39:46,791   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:46,791     117 |     struct unary_function
2025-09-08T01:39:46,791         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:47,036   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-08T01:39:47,036   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:39:47,037     100 |   if (&orig == NULL)
2025-09-08T01:39:47,037         |             ^
2025-09-08T01:39:47,037   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2025-09-08T01:39:47,037      96 | Delay::Delay (const Delay& orig) :
2025-09-08T01:39:47,037         |               ~~~~~~~~~~~~~^~~~
2025-09-08T01:39:47,038   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-08T01:39:47,038   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:39:47,038     122 |   if (&rhs == NULL)
2025-09-08T01:39:47,038         |            ^
2025-09-08T01:39:47,038   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2025-09-08T01:39:47,039     120 | Delay& Delay::operator=(const Delay& rhs)
2025-09-08T01:39:47,039         |                         ~~~~~~~~~~~~~^~~
2025-09-08T01:39:47,054   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2025-09-08T01:39:47,055   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:47,055     648 |   catch (SBMLConstructorException)
2025-09-08T01:39:47,055         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:47,055   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:39:47,055   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:47,056     664 |   catch (SBMLConstructorException)
2025-09-08T01:39:47,056         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:47,470   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-08T01:39:47,470   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:47,470     100 |   if (&orig == NULL)
2025-09-08T01:39:47,470         |   ^~
2025-09-08T01:39:47,470   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-08T01:39:47,470   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:47,470     122 |   if (&rhs == NULL)
2025-09-08T01:39:47,470         |   ^~
2025-09-08T01:39:51,253   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:39:51,253                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:39:51,253                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:39:51,253                    from ./base/sbml/Event.cpp:44:
2025-09-08T01:39:51,253   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:51,253      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:39:51,253         |                           ^~~~~~~~~~~~~~
2025-09-08T01:39:51,253   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:39:51,254                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:39:51,254                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:39:51,254                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:39:51,254                    from ./base/sbml/Event.cpp:33:
2025-09-08T01:39:51,254   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:51,254     117 |     struct unary_function
2025-09-08T01:39:51,254         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:51,502   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-08T01:39:51,503   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:39:51,503     134 |   if (&orig == NULL)
2025-09-08T01:39:51,503         |             ^
2025-09-08T01:39:51,503   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2025-09-08T01:39:51,503     127 | Event::Event (const Event& orig) :
2025-09-08T01:39:51,503         |               ~~~~~~~~~~~~~^~~~
2025-09-08T01:39:51,505   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-08T01:39:51,505   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:39:51,505     171 |   if (&rhs == NULL)
2025-09-08T01:39:51,506         |            ^
2025-09-08T01:39:51,506   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2025-09-08T01:39:51,506     169 | Event& Event::operator=(const Event& rhs)
2025-09-08T01:39:51,506         |                         ~~~~~~~~~~~~~^~~
2025-09-08T01:39:51,521   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-08T01:39:51,521   ./base/sbml/Event.cpp:538:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:51,521     538 |   if (&(sid) == NULL)
2025-09-08T01:39:51,522         |              ^
2025-09-08T01:39:51,522   ./base/sbml/Event.cpp:527:34: note: ‘sid’ declared here
2025-09-08T01:39:51,522     527 | Event::setId (const std::string& sid)
2025-09-08T01:39:51,522         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:51,522   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-08T01:39:51,522   ./base/sbml/Event.cpp:564:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:39:51,522     564 |   if (&(name) == NULL)
2025-09-08T01:39:51,522         |               ^
2025-09-08T01:39:51,522   ./base/sbml/Event.cpp:559:36: note: ‘name’ declared here
2025-09-08T01:39:51,523     559 | Event::setName (const std::string& name)
2025-09-08T01:39:51,523         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:39:51,528   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-08T01:39:51,528   ./base/sbml/Event.cpp:712:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:51,529     712 |   if (&(sid) == NULL)
2025-09-08T01:39:51,529         |              ^
2025-09-08T01:39:51,529   ./base/sbml/Event.cpp:710:41: note: ‘sid’ declared here
2025-09-08T01:39:51,529     710 | Event::setTimeUnits (const std::string& sid)
2025-09-08T01:39:51,529         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:51,536   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-08T01:39:51,536   ./base/sbml/Event.cpp:1111:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T01:39:51,537    1111 |   return (&variable != NULL ) ?
2025-09-08T01:39:51,537         |                     ^
2025-09-08T01:39:51,537   ./base/sbml/Event.cpp:1109:47: note: ‘variable’ declared here
2025-09-08T01:39:51,537    1109 | Event::getEventAssignment (const std::string& variable) const
2025-09-08T01:39:51,537         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:39:51,537   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-08T01:39:51,537   ./base/sbml/Event.cpp:1123:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T01:39:51,537    1123 |   return (&variable != NULL ) ?
2025-09-08T01:39:51,538         |                     ^
2025-09-08T01:39:51,538   ./base/sbml/Event.cpp:1121:47: note: ‘variable’ declared here
2025-09-08T01:39:51,538    1121 | Event::getEventAssignment (const std::string& variable)
2025-09-08T01:39:51,538         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:39:51,538   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-08T01:39:51,538   ./base/sbml/Event.cpp:1156:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T01:39:51,538    1156 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-08T01:39:51,538         |                     ^
2025-09-08T01:39:51,538   ./base/sbml/Event.cpp:1154:50: note: ‘variable’ declared here
2025-09-08T01:39:51,538    1154 | Event::removeEventAssignment (const std::string& variable)
2025-09-08T01:39:51,539         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:39:51,568   ./base/sbml/Event.cpp: At global scope:
2025-09-08T01:39:51,568   ./base/sbml/Event.cpp:1775:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:51,568    1775 | struct IdEqE : public unary_function<SBase*, bool>
2025-09-08T01:39:51,568         |                       ^~~~~~~~~~~~~~
2025-09-08T01:39:51,568   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:51,568     117 |     struct unary_function
2025-09-08T01:39:51,568         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:51,570   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-08T01:39:51,570   ./base/sbml/Event.cpp:1789:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:51,570    1789 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-08T01:39:51,570         |                ^
2025-09-08T01:39:51,570   ./base/sbml/Event.cpp:1787:39: note: ‘sid’ declared here
2025-09-08T01:39:51,570    1787 | ListOfEvents::get (const std::string& sid)
2025-09-08T01:39:51,570         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:51,570   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-08T01:39:51,571   ./base/sbml/Event.cpp:1798:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:51,571    1798 |   if (&sid == NULL) return NULL;
2025-09-08T01:39:51,571         |            ^
2025-09-08T01:39:51,571   ./base/sbml/Event.cpp:1796:39: note: ‘sid’ declared here
2025-09-08T01:39:51,571    1796 | ListOfEvents::get (const std::string& sid) const
2025-09-08T01:39:51,571         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:51,575   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-08T01:39:51,575   ./base/sbml/Event.cpp:1821:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:51,575    1821 |   if (&(sid) != NULL)
2025-09-08T01:39:51,575         |              ^
2025-09-08T01:39:51,576   ./base/sbml/Event.cpp:1816:42: note: ‘sid’ declared here
2025-09-08T01:39:51,576    1816 | ListOfEvents::remove (const std::string& sid)
2025-09-08T01:39:51,576         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:51,580   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2025-09-08T01:39:51,580   ./base/sbml/Event.cpp:1900:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:51,580    1900 |   catch (SBMLConstructorException)
2025-09-08T01:39:51,581         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:51,581   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:39:51,581   ./base/sbml/Event.cpp:1916:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:51,581    1916 |   catch (SBMLConstructorException)
2025-09-08T01:39:51,581         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:52,097   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-08T01:39:52,097   ./base/sbml/Event.cpp:1789:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,097    1789 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-08T01:39:52,097         |                         ^
2025-09-08T01:39:52,105   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-08T01:39:52,106   ./base/sbml/Event.cpp:1111:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,106    1111 |   return (&variable != NULL ) ?
2025-09-08T01:39:52,106         |                               ^
2025-09-08T01:39:52,106   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-08T01:39:52,106   ./base/sbml/Event.cpp:1123:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,106    1123 |   return (&variable != NULL ) ?
2025-09-08T01:39:52,106         |                               ^
2025-09-08T01:39:52,106   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-08T01:39:52,107   ./base/sbml/Event.cpp:1156:30: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,107    1156 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-08T01:39:52,107         |                              ^
2025-09-08T01:39:52,117   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-08T01:39:52,117   ./base/sbml/Event.cpp:1798:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,117    1798 |   if (&sid == NULL) return NULL;
2025-09-08T01:39:52,117         |   ^~
2025-09-08T01:39:52,120   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-08T01:39:52,120   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,120     171 |   if (&rhs == NULL)
2025-09-08T01:39:52,120         |   ^~
2025-09-08T01:39:52,125   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-08T01:39:52,126   ./base/sbml/Event.cpp:538:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,126     538 |   if (&(sid) == NULL)
2025-09-08T01:39:52,126         |   ^~
2025-09-08T01:39:52,126   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-08T01:39:52,126   ./base/sbml/Event.cpp:564:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,126     564 |   if (&(name) == NULL)
2025-09-08T01:39:52,126         |   ^~
2025-09-08T01:39:52,126   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-08T01:39:52,126   ./base/sbml/Event.cpp:712:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,126     712 |   if (&(sid) == NULL)
2025-09-08T01:39:52,127         |   ^~
2025-09-08T01:39:52,135   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-08T01:39:52,135   ./base/sbml/Event.cpp:1821:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,135    1821 |   if (&(sid) != NULL)
2025-09-08T01:39:52,135         |   ^~
2025-09-08T01:39:52,138   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-08T01:39:52,138   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:39:52,138     134 |   if (&orig == NULL)
2025-09-08T01:39:52,138         |   ^~
2025-09-08T01:39:59,343   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:39:59,344                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:39:59,344                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:39:59,344                    from ./base/sbml/EventAssignment.cpp:44:
2025-09-08T01:39:59,344   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:59,344      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:39:59,344         |                           ^~~~~~~~~~~~~~
2025-09-08T01:39:59,345   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:39:59,345                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:39:59,345                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:39:59,345                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:39:59,345                    from ./base/sbml/EventAssignment.cpp:33:
2025-09-08T01:39:59,346   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:59,346     117 |     struct unary_function
2025-09-08T01:39:59,346         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:59,591   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-08T01:39:59,591   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:39:59,591     100 |   if (&orig == NULL)
2025-09-08T01:39:59,591         |             ^
2025-09-08T01:39:59,591   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2025-09-08T01:39:59,591      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2025-09-08T01:39:59,592         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:39:59,593   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-08T01:39:59,593   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:39:59,593     122 |   if (&rhs == NULL)
2025-09-08T01:39:59,594         |            ^
2025-09-08T01:39:59,594   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2025-09-08T01:39:59,594     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2025-09-08T01:39:59,594         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:59,597   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-08T01:39:59,597   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:59,597     219 |   if (&(sid) == NULL)
2025-09-08T01:39:59,597         |              ^
2025-09-08T01:39:59,598   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2025-09-08T01:39:59,598     217 | EventAssignment::setVariable (const std::string& sid)
2025-09-08T01:39:59,598         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:59,626   ./base/sbml/EventAssignment.cpp: At global scope:
2025-09-08T01:39:59,626   ./base/sbml/EventAssignment.cpp:863:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:39:59,626     863 | struct IdEqEA : public unary_function<SBase*, bool>
2025-09-08T01:39:59,626         |                        ^~~~~~~~~~~~~~
2025-09-08T01:39:59,627   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:39:59,627     117 |     struct unary_function
2025-09-08T01:39:59,627         |            ^~~~~~~~~~~~~~
2025-09-08T01:39:59,630   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-08T01:39:59,630   ./base/sbml/EventAssignment.cpp:888:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:59,630     888 |   if (&(sid) == NULL)
2025-09-08T01:39:59,631         |              ^
2025-09-08T01:39:59,631   ./base/sbml/EventAssignment.cpp:884:49: note: ‘sid’ declared here
2025-09-08T01:39:59,631     884 | ListOfEventAssignments::get (const std::string& sid) const
2025-09-08T01:39:59,631         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:59,635   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-08T01:39:59,635   ./base/sbml/EventAssignment.cpp:916:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:39:59,635     916 |   if (&(sid) != NULL)
2025-09-08T01:39:59,635         |              ^
2025-09-08T01:39:59,635   ./base/sbml/EventAssignment.cpp:911:52: note: ‘sid’ declared here
2025-09-08T01:39:59,635     911 | ListOfEventAssignments::remove (const std::string& sid)
2025-09-08T01:39:59,635         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:39:59,641   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2025-09-08T01:39:59,642   ./base/sbml/EventAssignment.cpp:1009:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:59,642    1009 |   catch (SBMLConstructorException)
2025-09-08T01:39:59,642         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:39:59,643   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:39:59,643   ./base/sbml/EventAssignment.cpp:1025:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:39:59,643    1025 |   catch (SBMLConstructorException)
2025-09-08T01:39:59,643         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:00,142   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-08T01:40:00,142   ./base/sbml/EventAssignment.cpp:888:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:00,142     888 |   if (&(sid) == NULL)
2025-09-08T01:40:00,142         |   ^~
2025-09-08T01:40:00,146   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-08T01:40:00,146   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:00,146     100 |   if (&orig == NULL)
2025-09-08T01:40:00,146         |   ^~
2025-09-08T01:40:00,147   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-08T01:40:00,147   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:00,147     122 |   if (&rhs == NULL)
2025-09-08T01:40:00,147         |   ^~
2025-09-08T01:40:00,149   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-08T01:40:00,149   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:00,149     219 |   if (&(sid) == NULL)
2025-09-08T01:40:00,149         |   ^~
2025-09-08T01:40:00,160   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-08T01:40:00,161   ./base/sbml/EventAssignment.cpp:916:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:00,161     916 |   if (&(sid) != NULL)
2025-09-08T01:40:00,161         |   ^~
2025-09-08T01:40:07,897   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:40:07,897                    from ./base/sbml/FunctionDefinition.cpp:47:
2025-09-08T01:40:07,897   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:07,897      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:40:07,898         |                           ^~~~~~~~~~~~~~
2025-09-08T01:40:07,898   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:40:07,898                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:40:07,898                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:40:07,898                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:40:07,898                    from ./base/sbml/FunctionDefinition.cpp:35:
2025-09-08T01:40:07,898   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:07,898     117 |     struct unary_function
2025-09-08T01:40:07,898         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:08,197   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-08T01:40:08,197   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:40:08,197     102 |   if (&orig == NULL)
2025-09-08T01:40:08,197         |             ^
2025-09-08T01:40:08,198   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2025-09-08T01:40:08,198      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2025-09-08T01:40:08,198         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:40:08,199   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-08T01:40:08,199   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:40:08,199     125 |   if (&rhs == NULL)
2025-09-08T01:40:08,199         |            ^
2025-09-08T01:40:08,199   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2025-09-08T01:40:08,199     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2025-09-08T01:40:08,200         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:08,202   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-08T01:40:08,203   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:08,203     253 |   if (&(sid) == NULL)
2025-09-08T01:40:08,203         |              ^
2025-09-08T01:40:08,203   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2025-09-08T01:40:08,203     242 | FunctionDefinition::setId (const std::string& sid)
2025-09-08T01:40:08,203         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:08,203   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-08T01:40:08,203   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:40:08,204     278 |   if (&(name) == NULL)
2025-09-08T01:40:08,204         |               ^
2025-09-08T01:40:08,204   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2025-09-08T01:40:08,204     273 | FunctionDefinition::setName (const std::string& name)
2025-09-08T01:40:08,204         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:40:08,228   ./base/sbml/FunctionDefinition.cpp: At global scope:
2025-09-08T01:40:08,228   ./base/sbml/FunctionDefinition.cpp:998:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:08,229     998 | struct IdEqFD : public unary_function<SBase*, bool>
2025-09-08T01:40:08,229         |                        ^~~~~~~~~~~~~~
2025-09-08T01:40:08,229   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:08,229     117 |     struct unary_function
2025-09-08T01:40:08,229         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:08,232   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-08T01:40:08,232   ./base/sbml/FunctionDefinition.cpp:1023:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:08,232    1023 |   if (&(sid) == NULL)
2025-09-08T01:40:08,232         |              ^
2025-09-08T01:40:08,232   ./base/sbml/FunctionDefinition.cpp:1019:52: note: ‘sid’ declared here
2025-09-08T01:40:08,232    1019 | ListOfFunctionDefinitions::get (const std::string& sid) const
2025-09-08T01:40:08,233         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:08,235   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-08T01:40:08,235   ./base/sbml/FunctionDefinition.cpp:1051:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:08,236    1051 |   if (&(sid) != NULL)
2025-09-08T01:40:08,236         |              ^
2025-09-08T01:40:08,236   ./base/sbml/FunctionDefinition.cpp:1046:55: note: ‘sid’ declared here
2025-09-08T01:40:08,236    1046 | ListOfFunctionDefinitions::remove (const std::string& sid)
2025-09-08T01:40:08,236         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:08,240   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2025-09-08T01:40:08,241   ./base/sbml/FunctionDefinition.cpp:1128:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:08,241    1128 |   catch (SBMLConstructorException)
2025-09-08T01:40:08,241         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:08,241   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:40:08,241   ./base/sbml/FunctionDefinition.cpp:1144:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:08,242    1144 |   catch (SBMLConstructorException)
2025-09-08T01:40:08,242         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:08,743   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-08T01:40:08,743   ./base/sbml/FunctionDefinition.cpp:1023:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:08,743    1023 |   if (&(sid) == NULL)
2025-09-08T01:40:08,743         |   ^~
2025-09-08T01:40:08,746   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-08T01:40:08,746   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:08,746     102 |   if (&orig == NULL)
2025-09-08T01:40:08,746         |   ^~
2025-09-08T01:40:08,746   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-08T01:40:08,747   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:08,747     125 |   if (&rhs == NULL)
2025-09-08T01:40:08,747         |   ^~
2025-09-08T01:40:08,749   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-08T01:40:08,749   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:08,749     253 |   if (&(sid) == NULL)
2025-09-08T01:40:08,749         |   ^~
2025-09-08T01:40:08,749   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-08T01:40:08,750   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:08,750     278 |   if (&(name) == NULL)
2025-09-08T01:40:08,750         |   ^~
2025-09-08T01:40:08,758   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-08T01:40:08,758   ./base/sbml/FunctionDefinition.cpp:1051:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:08,758    1051 |   if (&(sid) != NULL)
2025-09-08T01:40:08,759         |   ^~
2025-09-08T01:40:14,356   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:40:14,356                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:40:14,356                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:40:14,356                    from ./base/sbml/InitialAssignment.cpp:43:
2025-09-08T01:40:14,356   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:14,356      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:40:14,357         |                           ^~~~~~~~~~~~~~
2025-09-08T01:40:14,357   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:40:14,357                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:40:14,357                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:40:14,357                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:40:14,357                    from ./base/sbml/InitialAssignment.cpp:33:
2025-09-08T01:40:14,357   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:14,357     117 |     struct unary_function
2025-09-08T01:40:14,357         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:14,603   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-08T01:40:14,603   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:40:14,604      97 |   if (&orig == NULL)
2025-09-08T01:40:14,604         |             ^
2025-09-08T01:40:14,604   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2025-09-08T01:40:14,604      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2025-09-08T01:40:14,604         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:40:14,605   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-08T01:40:14,605   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:40:14,605     119 |   if (&rhs == NULL)
2025-09-08T01:40:14,605         |            ^
2025-09-08T01:40:14,605   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2025-09-08T01:40:14,606     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2025-09-08T01:40:14,606         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:14,608   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-08T01:40:14,608   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:14,608     232 |   if (&(sid) == NULL)
2025-09-08T01:40:14,608         |              ^
2025-09-08T01:40:14,608   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2025-09-08T01:40:14,609     230 | InitialAssignment::setSymbol (const std::string& sid)
2025-09-08T01:40:14,609         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:14,633   ./base/sbml/InitialAssignment.cpp: At global scope:
2025-09-08T01:40:14,634   ./base/sbml/InitialAssignment.cpp:861:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:14,634     861 | struct IdEqIA : public unary_function<SBase*, bool>
2025-09-08T01:40:14,634         |                        ^~~~~~~~~~~~~~
2025-09-08T01:40:14,634   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:14,634     117 |     struct unary_function
2025-09-08T01:40:14,634         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:14,637   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-08T01:40:14,637   ./base/sbml/InitialAssignment.cpp:886:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:14,637     886 |   if (&(sid) == NULL)
2025-09-08T01:40:14,637         |              ^
2025-09-08T01:40:14,637   ./base/sbml/InitialAssignment.cpp:882:51: note: ‘sid’ declared here
2025-09-08T01:40:14,637     882 | ListOfInitialAssignments::get (const std::string& sid) const
2025-09-08T01:40:14,638         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:14,640   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-08T01:40:14,640   ./base/sbml/InitialAssignment.cpp:914:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:14,641     914 |   if (&(sid) != NULL)
2025-09-08T01:40:14,641         |              ^
2025-09-08T01:40:14,641   ./base/sbml/InitialAssignment.cpp:909:54: note: ‘sid’ declared here
2025-09-08T01:40:14,641     909 | ListOfInitialAssignments::remove (const std::string& sid)
2025-09-08T01:40:14,641         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:14,646   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2025-09-08T01:40:14,647   ./base/sbml/InitialAssignment.cpp:1007:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:14,647    1007 |   catch (SBMLConstructorException)
2025-09-08T01:40:14,647         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:14,647   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:40:14,647   ./base/sbml/InitialAssignment.cpp:1023:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:14,647    1023 |   catch (SBMLConstructorException)
2025-09-08T01:40:14,648         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:15,146   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-08T01:40:15,146   ./base/sbml/InitialAssignment.cpp:886:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:15,146     886 |   if (&(sid) == NULL)
2025-09-08T01:40:15,146         |   ^~
2025-09-08T01:40:15,149   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-08T01:40:15,149   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:15,149      97 |   if (&orig == NULL)
2025-09-08T01:40:15,149         |   ^~
2025-09-08T01:40:15,149   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-08T01:40:15,150   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:15,150     119 |   if (&rhs == NULL)
2025-09-08T01:40:15,150         |   ^~
2025-09-08T01:40:15,152   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-08T01:40:15,153   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:15,153     232 |   if (&(sid) == NULL)
2025-09-08T01:40:15,153         |   ^~
2025-09-08T01:40:15,162   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-08T01:40:15,162   ./base/sbml/InitialAssignment.cpp:914:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:15,162     914 |   if (&(sid) != NULL)
2025-09-08T01:40:15,162         |   ^~
2025-09-08T01:40:20,671   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:40:20,671                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:40:20,671                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:40:20,672                    from ./base/sbml/KineticLaw.cpp:45:
2025-09-08T01:40:20,672   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:20,672      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:40:20,672         |                           ^~~~~~~~~~~~~~
2025-09-08T01:40:20,672   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:40:20,672                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:40:20,672                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:40:20,672                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:40:20,672                    from ./base/sbml/KineticLaw.cpp:33:
2025-09-08T01:40:20,672   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:20,673     117 |     struct unary_function
2025-09-08T01:40:20,673         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:20,921   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-08T01:40:20,921   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:40:20,921     117 |   if (&orig == NULL)
2025-09-08T01:40:20,922         |             ^
2025-09-08T01:40:20,922   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2025-09-08T01:40:20,922     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2025-09-08T01:40:20,922         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:40:20,923   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-08T01:40:20,924   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:40:20,924     143 |   if (&rhs == NULL)
2025-09-08T01:40:20,924         |            ^
2025-09-08T01:40:20,924   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2025-09-08T01:40:20,924     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2025-09-08T01:40:20,924         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:20,934   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-08T01:40:20,935   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-08T01:40:20,935     363 |   if (&(formula) == NULL)
2025-09-08T01:40:20,935         |                  ^
2025-09-08T01:40:20,935   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2025-09-08T01:40:20,935     361 | KineticLaw::setFormula (const std::string& formula)
2025-09-08T01:40:20,935         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:40:20,937   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-08T01:40:20,938   ./base/sbml/KineticLaw.cpp:437:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:20,938     437 |   if (&(sid) == NULL)
2025-09-08T01:40:20,938         |              ^
2025-09-08T01:40:20,938   ./base/sbml/KineticLaw.cpp:434:46: note: ‘sid’ declared here
2025-09-08T01:40:20,938     434 | KineticLaw::setTimeUnits (const std::string& sid)
2025-09-08T01:40:20,938         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:20,939   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-08T01:40:20,939   ./base/sbml/KineticLaw.cpp:465:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:20,939     465 |   if (&(sid) == NULL)
2025-09-08T01:40:20,939         |              ^
2025-09-08T01:40:20,939   ./base/sbml/KineticLaw.cpp:462:51: note: ‘sid’ declared here
2025-09-08T01:40:20,939     462 | KineticLaw::setSubstanceUnits (const std::string& sid)
2025-09-08T01:40:20,939         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:20,953   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-08T01:40:20,953   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:20,953    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-08T01:40:20,953         |                ^
2025-09-08T01:40:20,953   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2025-09-08T01:40:20,954    1032 | KineticLaw::removeParameter (const std::string& sid)
2025-09-08T01:40:20,954         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:20,954   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-08T01:40:20,954   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:20,954    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-08T01:40:20,954         |                ^
2025-09-08T01:40:20,954   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2025-09-08T01:40:20,954    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2025-09-08T01:40:20,954         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:20,979   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2025-09-08T01:40:20,980   ./base/sbml/KineticLaw.cpp:1612:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:20,980    1612 |   catch (SBMLConstructorException)
2025-09-08T01:40:20,980         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:20,980   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:40:20,980   ./base/sbml/KineticLaw.cpp:1628:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:20,980    1628 |   catch (SBMLConstructorException)
2025-09-08T01:40:20,981         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:21,442   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-08T01:40:21,443   ./base/sbml/KineticLaw.cpp:1034:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:21,443    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-08T01:40:21,443         |                         ^
2025-09-08T01:40:21,443   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-08T01:40:21,443   ./base/sbml/KineticLaw.cpp:1045:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:21,443    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-08T01:40:21,443         |                         ^
2025-09-08T01:40:21,446   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-08T01:40:21,447   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:21,447     363 |   if (&(formula) == NULL)
2025-09-08T01:40:21,447         |   ^~
2025-09-08T01:40:21,452   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-08T01:40:21,452   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:21,452     143 |   if (&rhs == NULL)
2025-09-08T01:40:21,452         |   ^~
2025-09-08T01:40:21,456   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-08T01:40:21,456   ./base/sbml/KineticLaw.cpp:437:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:21,456     437 |   if (&(sid) == NULL)
2025-09-08T01:40:21,456         |   ^~
2025-09-08T01:40:21,456   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-08T01:40:21,456   ./base/sbml/KineticLaw.cpp:465:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:21,456     465 |   if (&(sid) == NULL)
2025-09-08T01:40:21,456         |   ^~
2025-09-08T01:40:21,463   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-08T01:40:21,463   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:21,463     117 |   if (&orig == NULL)
2025-09-08T01:40:21,464         |   ^~
2025-09-08T01:40:27,232   In file included from ./base/sbml/ListOf.cpp:37:
2025-09-08T01:40:27,232   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:27,232      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:40:27,233         |                           ^~~~~~~~~~~~~~
2025-09-08T01:40:27,233   In file included from /usr/include/c++/14/functional:49,
2025-09-08T01:40:27,233                    from ./base/sbml/ListOf.cpp:34:
2025-09-08T01:40:27,233   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:27,233     117 |     struct unary_function
2025-09-08T01:40:27,233         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:27,732   ./base/sbml/ListOf.cpp:77:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:27,733      77 | struct Delete : public unary_function<SBase*, void>
2025-09-08T01:40:27,733         |                        ^~~~~~~~~~~~~~
2025-09-08T01:40:27,733   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:27,733     117 |     struct unary_function
2025-09-08T01:40:27,733         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:27,735   ./base/sbml/ListOf.cpp:95:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:27,735      95 | struct Clone : public unary_function<SBase*, SBase*>
2025-09-08T01:40:27,735         |                       ^~~~~~~~~~~~~~
2025-09-08T01:40:27,735   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:27,735     117 |     struct unary_function
2025-09-08T01:40:27,736         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:27,752   ./base/sbml/ListOf.cpp:459:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:27,753     459 | struct SetSBMLDocument : public unary_function<SBase*, void>
2025-09-08T01:40:27,753         |                                 ^~~~~~~~~~~~~~
2025-09-08T01:40:27,753   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:27,753     117 |     struct unary_function
2025-09-08T01:40:27,753         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:27,753   ./base/sbml/ListOf.cpp:471:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:27,753     471 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2025-09-08T01:40:27,754         |                                     ^~~~~~~~~~~~~~
2025-09-08T01:40:27,754   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:27,754     117 |     struct unary_function
2025-09-08T01:40:27,754         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:27,756   ./base/sbml/ListOf.cpp:543:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:27,756     543 | struct Write : public unary_function<SBase*, void>
2025-09-08T01:40:27,756         |                       ^~~~~~~~~~~~~~
2025-09-08T01:40:27,757   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:27,757     117 |     struct unary_function
2025-09-08T01:40:27,757         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:32,478   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:40:32,479                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:40:32,479                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:40:32,479                    from ./base/sbml/LocalParameter.cpp:42:
2025-09-08T01:40:32,479   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:32,479      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:40:32,479         |                           ^~~~~~~~~~~~~~
2025-09-08T01:40:32,479   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:40:32,480                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:40:32,480                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:40:32,480                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:40:32,480                    from ./base/sbml/LocalParameter.cpp:35:
2025-09-08T01:40:32,480   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:32,480     117 |     struct unary_function
2025-09-08T01:40:32,480         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:32,721   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-08T01:40:32,722   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:40:32,722     103 |   if (&orig == NULL)
2025-09-08T01:40:32,722         |             ^
2025-09-08T01:40:32,722   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2025-09-08T01:40:32,722     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2025-09-08T01:40:32,722         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:40:32,723   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-08T01:40:32,723   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:40:32,723     116 |   if (&orig == NULL)
2025-09-08T01:40:32,723         |             ^
2025-09-08T01:40:32,723   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2025-09-08T01:40:32,723     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2025-09-08T01:40:32,723         |                                ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:40:32,724   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-08T01:40:32,724   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:40:32,724     126 |   if (&rhs == NULL)
2025-09-08T01:40:32,724         |            ^
2025-09-08T01:40:32,724   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2025-09-08T01:40:32,724     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2025-09-08T01:40:32,725         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:32,732   ./base/sbml/LocalParameter.cpp: At global scope:
2025-09-08T01:40:32,732   ./base/sbml/LocalParameter.cpp:393:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:32,732     393 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-08T01:40:32,732         |                       ^~~~~~~~~~~~~~
2025-09-08T01:40:32,733   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:32,733     117 |     struct unary_function
2025-09-08T01:40:32,733         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:32,736   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-08T01:40:32,736   ./base/sbml/LocalParameter.cpp:418:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:32,736     418 |   if (&(sid) == NULL)
2025-09-08T01:40:32,736         |              ^
2025-09-08T01:40:32,736   ./base/sbml/LocalParameter.cpp:414:48: note: ‘sid’ declared here
2025-09-08T01:40:32,736     414 | ListOfLocalParameters::get (const std::string& sid) const
2025-09-08T01:40:32,736         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:32,740   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-08T01:40:32,740   ./base/sbml/LocalParameter.cpp:460:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:32,740     460 |   if (&(sid) != NULL)
2025-09-08T01:40:32,740         |              ^
2025-09-08T01:40:32,741   ./base/sbml/LocalParameter.cpp:455:51: note: ‘sid’ declared here
2025-09-08T01:40:32,741     455 | ListOfLocalParameters::remove (const std::string& sid)
2025-09-08T01:40:32,741         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:32,745   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2025-09-08T01:40:32,746   ./base/sbml/LocalParameter.cpp:540:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:32,746     540 |   catch (SBMLConstructorException)
2025-09-08T01:40:32,746         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:32,746   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:40:32,746   ./base/sbml/LocalParameter.cpp:556:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:32,746     556 |   catch (SBMLConstructorException)
2025-09-08T01:40:32,747         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:33,227   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-08T01:40:33,228   ./base/sbml/LocalParameter.cpp:418:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:33,228     418 |   if (&(sid) == NULL)
2025-09-08T01:40:33,228         |   ^~
2025-09-08T01:40:33,230   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-08T01:40:33,230   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:33,231     103 |   if (&orig == NULL)
2025-09-08T01:40:33,231         |   ^~
2025-09-08T01:40:33,231   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-08T01:40:33,231   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:33,231     116 |   if (&orig == NULL)
2025-09-08T01:40:33,231         |   ^~
2025-09-08T01:40:33,231   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-08T01:40:33,231   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:33,231     126 |   if (&rhs == NULL)
2025-09-08T01:40:33,232         |   ^~
2025-09-08T01:40:33,238   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-08T01:40:33,238   ./base/sbml/LocalParameter.cpp:460:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:33,238     460 |   if (&(sid) != NULL)
2025-09-08T01:40:33,239         |   ^~
2025-09-08T01:40:37,459   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:40:37,459                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:40:37,459                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:40:37,459                    from ./base/sbml/Model.cpp:41:
2025-09-08T01:40:37,459   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:37,460      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:40:37,460         |                           ^~~~~~~~~~~~~~
2025-09-08T01:40:37,460   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:40:37,460                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:40:37,460                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:40:37,460                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:40:37,460                    from ./base/sbml/Model.cpp:33:
2025-09-08T01:40:37,460   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:37,461     117 |     struct unary_function
2025-09-08T01:40:37,461         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:37,757   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-08T01:40:37,758   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:40:37,758     175 |   if (&orig == NULL)
2025-09-08T01:40:37,758         |             ^
2025-09-08T01:40:37,758   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2025-09-08T01:40:37,758     160 | Model::Model(const Model& orig) :
2025-09-08T01:40:37,758         |              ~~~~~~~~~~~~~^~~~
2025-09-08T01:40:37,761   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-08T01:40:37,762   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:40:37,762     216 |   if (&rhs == NULL)
2025-09-08T01:40:37,762         |            ^
2025-09-08T01:40:37,762   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2025-09-08T01:40:37,762     214 | Model& Model::operator=(const Model& rhs)
2025-09-08T01:40:37,762         |                         ~~~~~~~~~~~~~^~~
2025-09-08T01:40:37,805   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-08T01:40:37,805   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:37,806     718 |   if (&(sid) == NULL)
2025-09-08T01:40:37,806         |              ^
2025-09-08T01:40:37,806   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2025-09-08T01:40:37,806     707 | Model::setId (const std::string& sid)
2025-09-08T01:40:37,806         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:37,806   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-08T01:40:37,806   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:40:37,806     743 |   if (&(name) == NULL)
2025-09-08T01:40:37,806         |               ^
2025-09-08T01:40:37,806   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2025-09-08T01:40:37,807     738 | Model::setName (const std::string& name)
2025-09-08T01:40:37,807         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:40:37,807   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-08T01:40:37,807   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T01:40:37,807     773 |   if (&(units) == NULL)
2025-09-08T01:40:37,808         |                ^
2025-09-08T01:40:37,808   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2025-09-08T01:40:37,808     771 | Model::setSubstanceUnits (const std::string& units)
2025-09-08T01:40:37,808         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:40:37,808   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-08T01:40:37,808   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T01:40:37,809     799 |   if (&(units) == NULL)
2025-09-08T01:40:37,809         |                ^
2025-09-08T01:40:37,809   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2025-09-08T01:40:37,809     797 | Model::setTimeUnits (const std::string& units)
2025-09-08T01:40:37,809         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:40:37,809   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-08T01:40:37,809   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T01:40:37,810     825 |   if (&(units) == NULL)
2025-09-08T01:40:37,810         |                ^
2025-09-08T01:40:37,810   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2025-09-08T01:40:37,810     823 | Model::setVolumeUnits (const std::string& units)
2025-09-08T01:40:37,810         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:40:37,810   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-08T01:40:37,811   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T01:40:37,811     851 |   if (&(units) == NULL)
2025-09-08T01:40:37,811         |                ^
2025-09-08T01:40:37,811   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2025-09-08T01:40:37,811     849 | Model::setAreaUnits (const std::string& units)
2025-09-08T01:40:37,811         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:40:37,812   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-08T01:40:37,812   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T01:40:37,812     877 |   if (&(units) == NULL)
2025-09-08T01:40:37,812         |                ^
2025-09-08T01:40:37,812   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2025-09-08T01:40:37,812     875 | Model::setLengthUnits (const std::string& units)
2025-09-08T01:40:37,812         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:40:37,813   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-08T01:40:37,813   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T01:40:37,813     903 |   if (&(units) == NULL)
2025-09-08T01:40:37,813         |                ^
2025-09-08T01:40:37,813   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2025-09-08T01:40:37,813     901 | Model::setExtentUnits (const std::string& units)
2025-09-08T01:40:37,813         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:40:37,814   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-08T01:40:37,814   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-08T01:40:37,814     929 |   if (&(id) == NULL)
2025-09-08T01:40:37,814         |             ^
2025-09-08T01:40:37,814   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2025-09-08T01:40:37,814     927 | Model::setConversionFactor (const std::string& id)
2025-09-08T01:40:37,814         |                             ~~~~~~~~~~~~~~~~~~~^~
2025-09-08T01:40:37,999   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2025-09-08T01:40:37,999   ./base/sbml/Model.cpp:6317:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:37,999    6317 |   catch (SBMLConstructorException)
2025-09-08T01:40:37,999         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:38,000   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:40:38,000   ./base/sbml/Model.cpp:6333:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:38,000    6333 |   catch (SBMLConstructorException)
2025-09-08T01:40:38,000         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:38,697   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-08T01:40:38,698   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,698     216 |   if (&rhs == NULL)
2025-09-08T01:40:38,698         |   ^~
2025-09-08T01:40:38,714   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-08T01:40:38,714   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,714     718 |   if (&(sid) == NULL)
2025-09-08T01:40:38,715         |   ^~
2025-09-08T01:40:38,715   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-08T01:40:38,715   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,715     743 |   if (&(name) == NULL)
2025-09-08T01:40:38,715         |   ^~
2025-09-08T01:40:38,715   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-08T01:40:38,715   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,715     773 |   if (&(units) == NULL)
2025-09-08T01:40:38,715         |   ^~
2025-09-08T01:40:38,716   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-08T01:40:38,716   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,716     799 |   if (&(units) == NULL)
2025-09-08T01:40:38,716         |   ^~
2025-09-08T01:40:38,716   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-08T01:40:38,716   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,716     825 |   if (&(units) == NULL)
2025-09-08T01:40:38,716         |   ^~
2025-09-08T01:40:38,716   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-08T01:40:38,717   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,717     851 |   if (&(units) == NULL)
2025-09-08T01:40:38,717         |   ^~
2025-09-08T01:40:38,717   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-08T01:40:38,717   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,717     877 |   if (&(units) == NULL)
2025-09-08T01:40:38,717         |   ^~
2025-09-08T01:40:38,718   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-08T01:40:38,718   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,718     903 |   if (&(units) == NULL)
2025-09-08T01:40:38,718         |   ^~
2025-09-08T01:40:38,718   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-08T01:40:38,718   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,718     929 |   if (&(id) == NULL)
2025-09-08T01:40:38,718         |   ^~
2025-09-08T01:40:38,742   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-08T01:40:38,742   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:38,743     175 |   if (&orig == NULL)
2025-09-08T01:40:38,743         |   ^~
2025-09-08T01:40:53,803   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:40:53,803                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:40:53,803                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:40:53,803                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2025-09-08T01:40:53,804   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:53,804      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:40:53,804         |                           ^~~~~~~~~~~~~~
2025-09-08T01:40:53,804   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:40:53,804                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:40:53,804                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:40:53,804                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:40:53,804                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2025-09-08T01:40:53,804   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:53,804     117 |     struct unary_function
2025-09-08T01:40:53,805         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:54,065   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)’:
2025-09-08T01:40:54,065   ./base/sbml/ModifierSpeciesReference.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:54,065     163 |   catch (SBMLConstructorException)
2025-09-08T01:40:54,065         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:54,066   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:40:54,066   ./base/sbml/ModifierSpeciesReference.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:54,066     179 |   catch (SBMLConstructorException)
2025-09-08T01:40:54,066         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:57,923   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:40:57,923                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:40:57,923                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:40:57,924                    from ./base/sbml/Parameter.cpp:42:
2025-09-08T01:40:57,924   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:57,924      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:40:57,924         |                           ^~~~~~~~~~~~~~
2025-09-08T01:40:57,924   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:40:57,924                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:40:57,924                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:40:57,924                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:40:57,924                    from ./base/sbml/Parameter.cpp:35:
2025-09-08T01:40:57,925   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:57,925     117 |     struct unary_function
2025-09-08T01:40:57,925         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:58,160   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-08T01:40:58,160   ./base/sbml/Parameter.cpp:155:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:40:58,160     155 |   if (&orig == NULL)
2025-09-08T01:40:58,160         |             ^
2025-09-08T01:40:58,160   ./base/sbml/Parameter.cpp:152:39: note: ‘orig’ declared here
2025-09-08T01:40:58,161     152 | Parameter::Parameter(const Parameter& orig) :
2025-09-08T01:40:58,161         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:40:58,162   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-08T01:40:58,162   ./base/sbml/Parameter.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:40:58,162     179 |   if (&rhs == NULL)
2025-09-08T01:40:58,162         |            ^
2025-09-08T01:40:58,162   ./base/sbml/Parameter.cpp:177:50: note: ‘rhs’ declared here
2025-09-08T01:40:58,162     177 | Parameter& Parameter::operator=(const Parameter& rhs)
2025-09-08T01:40:58,163         |                                 ~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:58,166   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-08T01:40:58,166   ./base/sbml/Parameter.cpp:364:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:58,166     364 |   if (&(sid) == NULL)
2025-09-08T01:40:58,166         |              ^
2025-09-08T01:40:58,166   ./base/sbml/Parameter.cpp:353:38: note: ‘sid’ declared here
2025-09-08T01:40:58,167     353 | Parameter::setId (const std::string& sid)
2025-09-08T01:40:58,167         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:58,167   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-08T01:40:58,167   ./base/sbml/Parameter.cpp:389:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:40:58,167     389 |   if (&(name) == NULL)
2025-09-08T01:40:58,167         |               ^
2025-09-08T01:40:58,167   ./base/sbml/Parameter.cpp:384:40: note: ‘name’ declared here
2025-09-08T01:40:58,167     384 | Parameter::setName (const std::string& name)
2025-09-08T01:40:58,167         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:40:58,168   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-08T01:40:58,168   ./base/sbml/Parameter.cpp:431:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T01:40:58,168     431 |   if (&(units) == NULL)
2025-09-08T01:40:58,168         |                ^
2025-09-08T01:40:58,168   ./base/sbml/Parameter.cpp:429:41: note: ‘units’ declared here
2025-09-08T01:40:58,169     429 | Parameter::setUnits (const std::string& units)
2025-09-08T01:40:58,169         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:40:58,224   ./base/sbml/Parameter.cpp: At global scope:
2025-09-08T01:40:58,225   ./base/sbml/Parameter.cpp:1558:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:40:58,225    1558 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-08T01:40:58,225         |                       ^~~~~~~~~~~~~~
2025-09-08T01:40:58,225   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:40:58,225     117 |     struct unary_function
2025-09-08T01:40:58,225         |            ^~~~~~~~~~~~~~
2025-09-08T01:40:58,228   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-08T01:40:58,228   ./base/sbml/Parameter.cpp:1581:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:58,228    1581 |   if (&(sid) == NULL)
2025-09-08T01:40:58,228         |              ^
2025-09-08T01:40:58,228   ./base/sbml/Parameter.cpp:1577:43: note: ‘sid’ declared here
2025-09-08T01:40:58,229    1577 | ListOfParameters::get (const std::string& sid) const
2025-09-08T01:40:58,229         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:58,231   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-08T01:40:58,232   ./base/sbml/Parameter.cpp:1608:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:40:58,232    1608 |   if (&(sid) != NULL)
2025-09-08T01:40:58,232         |              ^
2025-09-08T01:40:58,232   ./base/sbml/Parameter.cpp:1603:46: note: ‘sid’ declared here
2025-09-08T01:40:58,232    1603 | ListOfParameters::remove (const std::string& sid)
2025-09-08T01:40:58,232         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:40:58,237   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2025-09-08T01:40:58,237   ./base/sbml/Parameter.cpp:1688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:58,237    1688 |   catch (SBMLConstructorException)
2025-09-08T01:40:58,237         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:58,237   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:40:58,238   ./base/sbml/Parameter.cpp:1704:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:40:58,238    1704 |   catch (SBMLConstructorException)
2025-09-08T01:40:58,238         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:40:58,767   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-08T01:40:58,767   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:58,767     155 |   if (&orig == NULL)
2025-09-08T01:40:58,768         |   ^~
2025-09-08T01:40:58,768   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-08T01:40:58,768   ./base/sbml/Parameter.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:58,768     179 |   if (&rhs == NULL)
2025-09-08T01:40:58,768         |   ^~
2025-09-08T01:40:58,770   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-08T01:40:58,771   ./base/sbml/Parameter.cpp:364:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:58,771     364 |   if (&(sid) == NULL)
2025-09-08T01:40:58,771         |   ^~
2025-09-08T01:40:58,771   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-08T01:40:58,771   ./base/sbml/Parameter.cpp:389:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:58,771     389 |   if (&(name) == NULL)
2025-09-08T01:40:58,771         |   ^~
2025-09-08T01:40:58,771   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-08T01:40:58,771   ./base/sbml/Parameter.cpp:431:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:58,771     431 |   if (&(units) == NULL)
2025-09-08T01:40:58,772         |   ^~
2025-09-08T01:40:58,777   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-08T01:40:58,777   ./base/sbml/Parameter.cpp:1581:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:58,777    1581 |   if (&(sid) == NULL)
2025-09-08T01:40:58,777         |   ^~
2025-09-08T01:40:58,791   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-08T01:40:58,791   ./base/sbml/Parameter.cpp:1608:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:40:58,791    1608 |   if (&(sid) != NULL)
2025-09-08T01:40:58,791         |   ^~
2025-09-08T01:41:07,765   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:41:07,765                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:41:07,765                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:41:07,765                    from ./base/sbml/Priority.cpp:45:
2025-09-08T01:41:07,765   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:41:07,765      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:41:07,766         |                           ^~~~~~~~~~~~~~
2025-09-08T01:41:07,766   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:41:07,766                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:41:07,766                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:41:07,766                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:41:07,766                    from ./base/sbml/Priority.cpp:33:
2025-09-08T01:41:07,766   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:41:07,766     117 |     struct unary_function
2025-09-08T01:41:07,766         |            ^~~~~~~~~~~~~~
2025-09-08T01:41:08,015   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-08T01:41:08,015   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:41:08,015     100 |   if (&orig == NULL)
2025-09-08T01:41:08,015         |             ^
2025-09-08T01:41:08,015   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2025-09-08T01:41:08,015      96 | Priority::Priority (const Priority& orig) :
2025-09-08T01:41:08,015         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:41:08,016   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-08T01:41:08,016   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:41:08,017     122 |   if (&rhs == NULL)
2025-09-08T01:41:08,017         |            ^
2025-09-08T01:41:08,017   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2025-09-08T01:41:08,017     120 | Priority& Priority::operator=(const Priority& rhs)
2025-09-08T01:41:08,017         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:08,030   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2025-09-08T01:41:08,030   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:08,030     503 |   catch (SBMLConstructorException)
2025-09-08T01:41:08,030         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:08,031   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:41:08,031   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:08,031     519 |   catch (SBMLConstructorException)
2025-09-08T01:41:08,031         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:08,445   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-08T01:41:08,445   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:08,445     100 |   if (&orig == NULL)
2025-09-08T01:41:08,445         |   ^~
2025-09-08T01:41:08,446   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-08T01:41:08,446   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:08,446     122 |   if (&rhs == NULL)
2025-09-08T01:41:08,446         |   ^~
2025-09-08T01:41:12,053   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:41:12,053                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:41:12,053                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:41:12,053                    from ./base/sbml/RateRule.cpp:49:
2025-09-08T01:41:12,053   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:41:12,053      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:41:12,054         |                           ^~~~~~~~~~~~~~
2025-09-08T01:41:12,054   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:41:12,054                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:41:12,054                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:41:12,054                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:41:12,054                    from ./base/sbml/RateRule.cpp:34:
2025-09-08T01:41:12,054   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:41:12,054     117 |     struct unary_function
2025-09-08T01:41:12,054         |            ^~~~~~~~~~~~~~
2025-09-08T01:41:12,300   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_create(unsigned int, unsigned int)’:
2025-09-08T01:41:12,300   ./base/sbml/RateRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:12,301     154 |   catch (SBMLConstructorException)
2025-09-08T01:41:12,301         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:12,301   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:41:12,301   ./base/sbml/RateRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:12,301     170 |   catch (SBMLConstructorException)
2025-09-08T01:41:12,301         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:15,994   In file included from ./base//sbml/SpeciesReference.h:260,
2025-09-08T01:41:15,995                    from ./base/sbml/Reaction.cpp:40:
2025-09-08T01:41:15,995   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:41:15,995      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:41:15,995         |                           ^~~~~~~~~~~~~~
2025-09-08T01:41:15,996   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:41:15,996                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:41:15,996                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:41:15,996                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:41:15,996                    from ./base/sbml/Reaction.cpp:33:
2025-09-08T01:41:15,996   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:41:15,996     117 |     struct unary_function
2025-09-08T01:41:15,996         |            ^~~~~~~~~~~~~~
2025-09-08T01:41:16,308   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-08T01:41:16,308   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:41:16,308     185 |   if (&orig == NULL)
2025-09-08T01:41:16,308         |             ^
2025-09-08T01:41:16,308   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2025-09-08T01:41:16,309     178 | Reaction::Reaction (const Reaction& orig) :
2025-09-08T01:41:16,309         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:41:16,311   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-08T01:41:16,311   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:41:16,311     215 |   if (&rhs == NULL)
2025-09-08T01:41:16,312         |            ^
2025-09-08T01:41:16,312   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2025-09-08T01:41:16,312     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2025-09-08T01:41:16,312         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:16,327   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-08T01:41:16,328   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:41:16,328     549 |   if (&(sid) == NULL)
2025-09-08T01:41:16,328         |              ^
2025-09-08T01:41:16,328   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2025-09-08T01:41:16,328     538 | Reaction::setId (const std::string& sid)
2025-09-08T01:41:16,328         |                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:16,329   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-08T01:41:16,329   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:41:16,329     574 |   if (&(name) == NULL)
2025-09-08T01:41:16,330         |               ^
2025-09-08T01:41:16,330   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2025-09-08T01:41:16,330     569 | Reaction::setName (const std::string& name)
2025-09-08T01:41:16,330         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:41:16,333   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-08T01:41:16,334   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:41:16,334     665 |   if (&(sid) == NULL)
2025-09-08T01:41:16,334         |              ^
2025-09-08T01:41:16,334   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2025-09-08T01:41:16,334     663 | Reaction::setCompartment (const std::string& sid)
2025-09-08T01:41:16,334         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:16,387   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-08T01:41:16,387   ./base/sbml/Reaction.cpp:1933:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:41:16,388    1933 |   if (&(sid) == NULL)
2025-09-08T01:41:16,388         |              ^
2025-09-08T01:41:16,388   ./base/sbml/Reaction.cpp:1929:42: note: ‘sid’ declared here
2025-09-08T01:41:16,388    1929 | ListOfReactions::get (const std::string& sid) const
2025-09-08T01:41:16,388         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:16,392   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-08T01:41:16,392   ./base/sbml/Reaction.cpp:1960:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:41:16,392    1960 |   if (&(sid) != NULL)
2025-09-08T01:41:16,392         |              ^
2025-09-08T01:41:16,393   ./base/sbml/Reaction.cpp:1955:45: note: ‘sid’ declared here
2025-09-08T01:41:16,393    1955 | ListOfReactions::remove (const std::string& sid)
2025-09-08T01:41:16,393         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:16,398   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2025-09-08T01:41:16,398   ./base/sbml/Reaction.cpp:2038:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:16,398    2038 |   catch (SBMLConstructorException)
2025-09-08T01:41:16,398         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:16,399   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:41:16,400   ./base/sbml/Reaction.cpp:2054:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:16,400    2054 |   catch (SBMLConstructorException)
2025-09-08T01:41:16,400         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:16,952   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-08T01:41:16,952   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:16,953     215 |   if (&rhs == NULL)
2025-09-08T01:41:16,953         |   ^~
2025-09-08T01:41:16,958   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-08T01:41:16,958   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:16,958     549 |   if (&(sid) == NULL)
2025-09-08T01:41:16,958         |   ^~
2025-09-08T01:41:16,958   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-08T01:41:16,958   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:16,958     574 |   if (&(name) == NULL)
2025-09-08T01:41:16,959         |   ^~
2025-09-08T01:41:16,959   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-08T01:41:16,959   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:16,959     665 |   if (&(sid) == NULL)
2025-09-08T01:41:16,959         |   ^~
2025-09-08T01:41:16,960   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-08T01:41:16,961   ./base/sbml/Reaction.cpp:1933:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:16,961    1933 |   if (&(sid) == NULL)
2025-09-08T01:41:16,961         |   ^~
2025-09-08T01:41:16,970   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-08T01:41:16,970   ./base/sbml/Reaction.cpp:1960:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:16,970    1960 |   if (&(sid) != NULL)
2025-09-08T01:41:16,970         |   ^~
2025-09-08T01:41:16,973   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-08T01:41:16,973   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:16,973     185 |   if (&orig == NULL)
2025-09-08T01:41:16,973         |   ^~
2025-09-08T01:41:24,861   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:41:24,862                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:41:24,862                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:41:24,862                    from ./base/sbml/Rule.cpp:49:
2025-09-08T01:41:24,862   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:41:24,862      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:41:24,862         |                           ^~~~~~~~~~~~~~
2025-09-08T01:41:24,862   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:41:24,862                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:41:24,862                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:41:24,863                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:41:24,863                    from ./base/sbml/Rule.cpp:34:
2025-09-08T01:41:24,863   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:41:24,863     117 |     struct unary_function
2025-09-08T01:41:24,863         |            ^~~~~~~~~~~~~~
2025-09-08T01:41:25,107   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-08T01:41:25,108   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:41:25,108     110 |   if (&orig == NULL)
2025-09-08T01:41:25,108         |             ^
2025-09-08T01:41:25,108   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2025-09-08T01:41:25,108     106 | Rule::Rule (const Rule& orig) :
2025-09-08T01:41:25,108         |             ~~~~~~~~~~~~^~~~
2025-09-08T01:41:25,110   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-08T01:41:25,110   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:41:25,110     137 |   if (&rhs == NULL)
2025-09-08T01:41:25,110         |            ^
2025-09-08T01:41:25,110   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2025-09-08T01:41:25,110     135 | Rule& Rule::operator=(const Rule& rhs)
2025-09-08T01:41:25,111         |                       ~~~~~~~~~~~~^~~
2025-09-08T01:41:25,115   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-08T01:41:25,116   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-08T01:41:25,116     326 |   if (&(formula) == NULL)
2025-09-08T01:41:25,116         |                  ^
2025-09-08T01:41:25,116   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2025-09-08T01:41:25,116     324 | Rule::setFormula (const std::string& formula)
2025-09-08T01:41:25,116         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:41:25,119   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-08T01:41:25,119   ./base/sbml/Rule.cpp:399:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:41:25,119     399 |   if (&(sid) == NULL)
2025-09-08T01:41:25,119         |              ^
2025-09-08T01:41:25,119   ./base/sbml/Rule.cpp:397:39: note: ‘sid’ declared here
2025-09-08T01:41:25,120     397 | Rule::setVariable (const std::string& sid)
2025-09-08T01:41:25,120         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:25,120   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-08T01:41:25,120   ./base/sbml/Rule.cpp:427:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2025-09-08T01:41:25,120     427 |   if (&(sname) == NULL)
2025-09-08T01:41:25,120         |                ^
2025-09-08T01:41:25,120   ./base/sbml/Rule.cpp:424:36: note: ‘sname’ declared here
2025-09-08T01:41:25,120     424 | Rule::setUnits (const std::string& sname)
2025-09-08T01:41:25,121         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:41:25,169   ./base/sbml/Rule.cpp: At global scope:
2025-09-08T01:41:25,169   ./base/sbml/Rule.cpp:1456:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:41:25,169    1456 | struct IdEqRule : public unary_function<SBase*, bool>
2025-09-08T01:41:25,169         |                          ^~~~~~~~~~~~~~
2025-09-08T01:41:25,169   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:41:25,169     117 |     struct unary_function
2025-09-08T01:41:25,169         |            ^~~~~~~~~~~~~~
2025-09-08T01:41:25,172   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-08T01:41:25,172   ./base/sbml/Rule.cpp:1481:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:41:25,172    1481 |   if (&(sid) == NULL)
2025-09-08T01:41:25,172         |              ^
2025-09-08T01:41:25,172   ./base/sbml/Rule.cpp:1477:38: note: ‘sid’ declared here
2025-09-08T01:41:25,173    1477 | ListOfRules::get (const std::string& sid) const
2025-09-08T01:41:25,173         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:25,176   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-08T01:41:25,176   ./base/sbml/Rule.cpp:1522:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:41:25,177    1522 |   if (&(sid) != NULL)
2025-09-08T01:41:25,177         |              ^
2025-09-08T01:41:25,177   ./base/sbml/Rule.cpp:1517:41: note: ‘sid’ declared here
2025-09-08T01:41:25,177    1517 | ListOfRules::remove (const std::string& sid)
2025-09-08T01:41:25,177         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:25,191   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2025-09-08T01:41:25,191   ./base/sbml/Rule.cpp:1711:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:25,191    1711 |   catch (SBMLConstructorException)
2025-09-08T01:41:25,191         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:25,192   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:41:25,192   ./base/sbml/Rule.cpp:1727:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:25,192    1727 |   catch (SBMLConstructorException)
2025-09-08T01:41:25,192         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:25,193   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2025-09-08T01:41:25,193   ./base/sbml/Rule.cpp:1743:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:25,193    1743 |   catch (SBMLConstructorException)
2025-09-08T01:41:25,193         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:25,193   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:41:25,194   ./base/sbml/Rule.cpp:1759:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:25,194    1759 |   catch (SBMLConstructorException)
2025-09-08T01:41:25,194         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:25,194   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2025-09-08T01:41:25,194   ./base/sbml/Rule.cpp:1775:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:25,195    1775 |   catch (SBMLConstructorException)
2025-09-08T01:41:25,195         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:25,195   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:41:25,195   ./base/sbml/Rule.cpp:1791:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:25,195    1791 |   catch (SBMLConstructorException)
2025-09-08T01:41:25,195         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:25,717   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-08T01:41:25,718   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:25,718     326 |   if (&(formula) == NULL)
2025-09-08T01:41:25,718         |   ^~
2025-09-08T01:41:25,726   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-08T01:41:25,726   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:25,727     110 |   if (&orig == NULL)
2025-09-08T01:41:25,727         |   ^~
2025-09-08T01:41:25,727   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-08T01:41:25,727   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:25,727     137 |   if (&rhs == NULL)
2025-09-08T01:41:25,727         |   ^~
2025-09-08T01:41:25,729   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-08T01:41:25,729   ./base/sbml/Rule.cpp:399:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:25,730     399 |   if (&(sid) == NULL)
2025-09-08T01:41:25,730         |   ^~
2025-09-08T01:41:25,730   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-08T01:41:25,730   ./base/sbml/Rule.cpp:427:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:25,730     427 |   if (&(sname) == NULL)
2025-09-08T01:41:25,730         |   ^~
2025-09-08T01:41:25,734   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-08T01:41:25,735   ./base/sbml/Rule.cpp:1481:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:25,735    1481 |   if (&(sid) == NULL)
2025-09-08T01:41:25,735         |   ^~
2025-09-08T01:41:25,744   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-08T01:41:25,745   ./base/sbml/Rule.cpp:1522:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:25,745    1522 |   if (&(sid) != NULL)
2025-09-08T01:41:25,745         |   ^~
2025-09-08T01:41:36,110   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:41:36,110                    from ./base//sbml/Model.h:446,
2025-09-08T01:41:36,110                    from ./base/sbml/SBMLConvert.cpp:37:
2025-09-08T01:41:36,110   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:41:36,110      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:41:36,111         |                           ^~~~~~~~~~~~~~
2025-09-08T01:41:36,111   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:41:36,111                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:41:36,112                    from ./base//sbml/math/ASTNode.h:164,
2025-09-08T01:41:36,112                    from ./base/sbml/SBMLConvert.cpp:34:
2025-09-08T01:41:36,112   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:41:36,112     117 |     struct unary_function
2025-09-08T01:41:36,112         |            ^~~~~~~~~~~~~~
2025-09-08T01:41:44,136   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:41:44,137                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:41:44,137                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:41:44,137                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:41:44,137                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T01:41:44,137                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2025-09-08T01:41:44,137                    from ./base/sbml/SBMLDocument.cpp:44:
2025-09-08T01:41:44,137   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:41:44,137      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:41:44,137         |                           ^~~~~~~~~~~~~~
2025-09-08T01:41:44,138   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:41:44,138                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:41:44,138                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:41:44,138                    from /usr/include/c++/14/ios:44,
2025-09-08T01:41:44,138                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:41:44,138                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:41:44,138                    from ./base/sbml/SBMLDocument.cpp:35:
2025-09-08T01:41:44,139   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:41:44,139     117 |     struct unary_function
2025-09-08T01:41:44,139         |            ^~~~~~~~~~~~~~
2025-09-08T01:41:44,480   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-08T01:41:44,480   ./base/sbml/SBMLDocument.cpp:259:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:41:44,480     259 |   if (&orig == NULL)
2025-09-08T01:41:44,480         |             ^
2025-09-08T01:41:44,480   ./base/sbml/SBMLDocument.cpp:254:49: note: ‘orig’ declared here
2025-09-08T01:41:44,480     254 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2025-09-08T01:41:44,480         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:41:44,482   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-08T01:41:44,482   ./base/sbml/SBMLDocument.cpp:300:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:41:44,483     300 |   if (&rhs == NULL)
2025-09-08T01:41:44,483         |            ^
2025-09-08T01:41:44,483   ./base/sbml/SBMLDocument.cpp:298:59: note: ‘rhs’ declared here
2025-09-08T01:41:44,483     298 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2025-09-08T01:41:44,483         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:41:44,604   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2025-09-08T01:41:44,605   ./base/sbml/SBMLDocument.cpp:1992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:44,605    1992 |   catch (SBMLConstructorException)
2025-09-08T01:41:44,605         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:44,605   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2025-09-08T01:41:44,605   ./base/sbml/SBMLDocument.cpp:2008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:44,606    2008 |   catch (SBMLConstructorException)
2025-09-08T01:41:44,606         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:44,606   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2025-09-08T01:41:44,606   ./base/sbml/SBMLDocument.cpp:2024:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:41:44,606    2024 |   catch (SBMLConstructorException)
2025-09-08T01:41:44,606         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:41:45,272   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-08T01:41:45,272   ./base/sbml/SBMLDocument.cpp:300:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:45,272     300 |   if (&rhs == NULL)
2025-09-08T01:41:45,272         |   ^~
2025-09-08T01:41:45,301   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-08T01:41:45,301   ./base/sbml/SBMLDocument.cpp:259:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:41:45,301     259 |   if (&orig == NULL)
2025-09-08T01:41:45,301         |   ^~
2025-09-08T01:41:54,455   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:41:54,456                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:41:54,456                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:41:54,456                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:41:54,456                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:41:54,456                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T01:41:54,456                    from ./base/sbml/SBMLError.cpp:41:
2025-09-08T01:41:54,456   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:41:54,456      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:41:54,457         |                           ^~~~~~~~~~~~~~
2025-09-08T01:41:54,457   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:41:54,457                    from ./base/sbml/SBMLError.cpp:33:
2025-09-08T01:41:54,457   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:41:54,457     117 |     struct unary_function
2025-09-08T01:41:54,457         |            ^~~~~~~~~~~~~~
2025-09-08T01:41:59,132   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:41:59,132      86 | struct Delete : public unary_function<XMLError*, void>
2025-09-08T01:41:59,132         |                        ^~~~~~~~~~~~~~
2025-09-08T01:41:59,132   In file included from /usr/include/c++/14/functional:49,
2025-09-08T01:41:59,132                    from ./base/sbml/SBMLErrorLog.cpp:34:
2025-09-08T01:41:59,132   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:41:59,133     117 |     struct unary_function
2025-09-08T01:41:59,133         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:02,724   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:42:02,725                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:42:02,725                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:42:02,725                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:42:02,725                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:42:02,725                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T01:42:02,725                    from ./base/sbml/SBMLNamespaces.cpp:35:
2025-09-08T01:42:02,725   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:02,725      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:42:02,725         |                           ^~~~~~~~~~~~~~
2025-09-08T01:42:02,726   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:42:02,726                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:42:02,726                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:42:02,726                    from ./base/sbml/SBMLNamespaces.cpp:34:
2025-09-08T01:42:02,726   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:02,727     117 |     struct unary_function
2025-09-08T01:42:02,727         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:03,026   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-08T01:42:03,026   ./base/sbml/SBMLNamespaces.cpp:178:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:42:03,026     178 |   if (&orig == NULL)
2025-09-08T01:42:03,026         |             ^
2025-09-08T01:42:03,026   ./base/sbml/SBMLNamespaces.cpp:176:54: note: ‘orig’ declared here
2025-09-08T01:42:03,026     176 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2025-09-08T01:42:03,027         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:42:03,030   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-08T01:42:03,031   ./base/sbml/SBMLNamespaces.cpp:229:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:42:03,031     229 |   if (&rhs == NULL)
2025-09-08T01:42:03,031         |            ^
2025-09-08T01:42:03,031   ./base/sbml/SBMLNamespaces.cpp:227:49: note: ‘rhs’ declared here
2025-09-08T01:42:03,031     227 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2025-09-08T01:42:03,031         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:42:03,521   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-08T01:42:03,521   ./base/sbml/SBMLNamespaces.cpp:178:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:03,521     178 |   if (&orig == NULL)
2025-09-08T01:42:03,521         |   ^~
2025-09-08T01:42:03,522   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-08T01:42:03,522   ./base/sbml/SBMLNamespaces.cpp:229:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:03,522     229 |   if (&rhs == NULL)
2025-09-08T01:42:03,522         |   ^~
2025-09-08T01:42:08,381   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:42:08,381                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:42:08,381                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:42:08,381                    from ./base/sbml/SBMLReader.cpp:39:
2025-09-08T01:42:08,381   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:08,381      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:42:08,382         |                           ^~~~~~~~~~~~~~
2025-09-08T01:42:08,382   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:42:08,382                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:42:08,382                    from ./base/sbml/SBMLReader.cpp:33:
2025-09-08T01:42:08,382   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:08,382     117 |     struct unary_function
2025-09-08T01:42:08,382         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:08,625   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2025-09-08T01:42:08,625   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2025-09-08T01:42:08,625     139 |   if (&xml == NULL) return NULL;
2025-09-08T01:42:08,625         |            ^
2025-09-08T01:42:08,626   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2025-09-08T01:42:08,626     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2025-09-08T01:42:08,626         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:42:09,056   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:09,056     139 |   if (&xml == NULL) return NULL;
2025-09-08T01:42:09,056         |   ^~
2025-09-08T01:42:12,758   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:42:12,758                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:42:12,758                    from ./base/sbml/SBMLTransforms.cpp:33:
2025-09-08T01:42:12,758   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:12,759      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:42:12,759         |                           ^~~~~~~~~~~~~~
2025-09-08T01:42:12,759   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:42:12,759                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:42:12,759                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T01:42:12,759                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T01:42:12,759                    from ./base//sbml/SBase.h:145,
2025-09-08T01:42:12,759                    from ./base//sbml/SBMLTransforms.h:45:
2025-09-08T01:42:12,759   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:12,760     117 |     struct unary_function
2025-09-08T01:42:12,760         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:20,379   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:42:20,379                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:42:20,379                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:42:20,379                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:42:20,379                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:42:20,379                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2025-09-08T01:42:20,380   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:20,380      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:42:20,380         |                           ^~~~~~~~~~~~~~
2025-09-08T01:42:20,380   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:42:20,380                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:42:20,380                    from ./base//sbml/SBMLError.h:457,
2025-09-08T01:42:20,380                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T01:42:20,380   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:20,380     117 |     struct unary_function
2025-09-08T01:42:20,381         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:24,058   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:42:24,058                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:42:24,058                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:42:24,058                    from ./base/sbml/SBMLVisitor.cpp:34:
2025-09-08T01:42:24,058   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:24,058      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:42:24,059         |                           ^~~~~~~~~~~~~~
2025-09-08T01:42:24,059   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:42:24,059                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:42:24,059                    from ./base//sbml/SBMLError.h:457,
2025-09-08T01:42:24,059                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T01:42:24,059   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:24,059     117 |     struct unary_function
2025-09-08T01:42:24,059         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:27,712   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:42:27,712                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:42:27,713                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:42:27,713                    from ./base/sbml/SBMLWriter.cpp:42:
2025-09-08T01:42:27,713   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:27,713      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:42:27,713         |                           ^~~~~~~~~~~~~~
2025-09-08T01:42:27,713   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:42:27,713                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:42:27,713                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:42:27,713                    from /usr/include/c++/14/ios:44,
2025-09-08T01:42:27,714                    from ./base/sbml/SBMLWriter.cpp:33:
2025-09-08T01:42:27,714   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:27,714     117 |     struct unary_function
2025-09-08T01:42:27,714         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:27,957   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-08T01:42:27,958   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:42:27,958      85 |   if (&(name) == NULL)
2025-09-08T01:42:27,958         |               ^
2025-09-08T01:42:27,958   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2025-09-08T01:42:27,958      83 | SBMLWriter::setProgramName (const std::string& name)
2025-09-08T01:42:27,958         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:42:27,958   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-08T01:42:27,958   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2025-09-08T01:42:27,958     109 |   if (&(version) == NULL)
2025-09-08T01:42:27,959         |                  ^
2025-09-08T01:42:27,959   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2025-09-08T01:42:27,959     107 | SBMLWriter::setProgramVersion (const std::string& version)
2025-09-08T01:42:27,959         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:42:28,432   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-08T01:42:28,432   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:28,432      85 |   if (&(name) == NULL)
2025-09-08T01:42:28,432         |   ^~
2025-09-08T01:42:28,432   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-08T01:42:28,433   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:28,433     109 |   if (&(version) == NULL)
2025-09-08T01:42:28,433         |   ^~
2025-09-08T01:42:31,949   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:31,949     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2025-09-08T01:42:31,950         |                           ^~~~~~~~~~~~~~
2025-09-08T01:42:31,950   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:42:31,950                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:42:31,950                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:42:31,950                    from /usr/include/c++/14/iomanip:42,
2025-09-08T01:42:31,950                    from ./base/sbml/SBO.cpp:33:
2025-09-08T01:42:31,950   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:31,950     117 |     struct unary_function
2025-09-08T01:42:31,950         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:40,204   In file included from ./base//sbml/Parameter.h:169,
2025-09-08T01:42:40,204                    from ./base//sbml/KineticLaw.h:169,
2025-09-08T01:42:40,205                    from ./base/sbml/SBase.cpp:46:
2025-09-08T01:42:40,205   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:40,205      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:42:40,205         |                           ^~~~~~~~~~~~~~
2025-09-08T01:42:40,205   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:42:40,205                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:42:40,205                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:42:40,205                    from /usr/include/c++/14/ios:44,
2025-09-08T01:42:40,205                    from /usr/include/c++/14/istream:40,
2025-09-08T01:42:40,206                    from /usr/include/c++/14/sstream:40,
2025-09-08T01:42:40,206                    from ./base/sbml/SBase.cpp:33:
2025-09-08T01:42:40,206   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:40,206     117 |     struct unary_function
2025-09-08T01:42:40,206         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:40,607   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:40,608      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2025-09-08T01:42:40,608         |                                    ^~~~~~~~~~~~~~
2025-09-08T01:42:40,608   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:40,608     117 |     struct unary_function
2025-09-08T01:42:40,608         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:40,608   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:40,608      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2025-09-08T01:42:40,608         |                                   ^~~~~~~~~~~~~~
2025-09-08T01:42:40,609   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:40,609     117 |     struct unary_function
2025-09-08T01:42:40,609         |            ^~~~~~~~~~~~~~
2025-09-08T01:42:40,626   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T01:42:40,626   ./base/sbml/SBase.cpp:382:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:42:40,626     382 |   if (&orig == NULL)
2025-09-08T01:42:40,626         |             ^
2025-09-08T01:42:40,626   ./base/sbml/SBase.cpp:380:27: note: ‘orig’ declared here
2025-09-08T01:42:40,627     380 | SBase::SBase(const SBase& orig)
2025-09-08T01:42:40,627         |              ~~~~~~~~~~~~~^~~~
2025-09-08T01:42:40,636   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T01:42:40,636   ./base/sbml/SBase.cpp:495:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:42:40,636     495 |   if (&rhs == NULL)
2025-09-08T01:42:40,636         |            ^
2025-09-08T01:42:40,636   ./base/sbml/SBase.cpp:493:38: note: ‘rhs’ declared here
2025-09-08T01:42:40,636     493 | SBase& SBase::operator=(const SBase& rhs)
2025-09-08T01:42:40,636         |                         ~~~~~~~~~~~~~^~~
2025-09-08T01:42:40,654   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T01:42:40,655   ./base/sbml/SBase.cpp:1195:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T01:42:40,655    1195 |   if (&(metaid) == NULL)
2025-09-08T01:42:40,655         |                 ^
2025-09-08T01:42:40,655   ./base/sbml/SBase.cpp:1193:38: note: ‘metaid’ declared here
2025-09-08T01:42:40,655    1193 | SBase::setMetaId (const std::string& metaid)
2025-09-08T01:42:40,655         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:42:40,661   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T01:42:40,661   ./base/sbml/SBase.cpp:1380:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2025-09-08T01:42:40,661    1380 |   if (&(annotation) == NULL)
2025-09-08T01:42:40,662         |                     ^
2025-09-08T01:42:40,662   ./base/sbml/SBase.cpp:1378:42: note: ‘annotation’ declared here
2025-09-08T01:42:40,662    1378 | SBase::setAnnotation (const std::string& annotation)
2025-09-08T01:42:40,662         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T01:42:40,678   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T01:42:40,678   ./base/sbml/SBase.cpp:1777:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2025-09-08T01:42:40,678    1777 |   if (&(notes) == NULL)
2025-09-08T01:42:40,678         |                ^
2025-09-08T01:42:40,678   ./base/sbml/SBase.cpp:1774:36: note: ‘notes’ declared here
2025-09-08T01:42:40,678    1774 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2025-09-08T01:42:40,679         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:42:40,709   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T01:42:40,709   ./base/sbml/SBase.cpp:2427:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2025-09-08T01:42:40,709    2427 |   if (&(sboid) == NULL)
2025-09-08T01:42:40,710         |                ^
2025-09-08T01:42:40,710   ./base/sbml/SBase.cpp:2425:39: note: ‘sboid’ declared here
2025-09-08T01:42:40,710    2425 | SBase::setSBOTerm (const std::string &sboid)
2025-09-08T01:42:40,710         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:42:40,759   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2025-09-08T01:42:40,760   ./base/sbml/SBase.cpp:3739:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2025-09-08T01:42:40,760    3739 |   if (&pkgName == NULL)
2025-09-08T01:42:40,760         |                ^
2025-09-08T01:42:40,760   ./base/sbml/SBase.cpp:3738:22: note: ‘pkgName’ declared here
2025-09-08T01:42:40,760    3738 |   const std::string& pkgName = getPackageName();
2025-09-08T01:42:40,760         |                      ^~~~~~~
2025-09-08T01:42:40,938   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T01:42:40,938   ./base/sbml/SBase.cpp:6144:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:42:40,938    6144 |   if (&node == NULL) return;
2025-09-08T01:42:40,938         |             ^
2025-09-08T01:42:40,938   ./base/sbml/SBase.cpp:6142:22: note: ‘node’ declared here
2025-09-08T01:42:40,939    6142 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2025-09-08T01:42:40,939         |             ~~~~~~~~~^~~~
2025-09-08T01:42:41,651   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T01:42:41,651   ./base/sbml/SBase.cpp:2427:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:41,651    2427 |   if (&(sboid) == NULL)
2025-09-08T01:42:41,652         |   ^~
2025-09-08T01:42:41,660   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T01:42:41,660   ./base/sbml/SBase.cpp:1380:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:41,660    1380 |   if (&(annotation) == NULL)
2025-09-08T01:42:41,660         |   ^~
2025-09-08T01:42:41,679   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T01:42:41,680   ./base/sbml/SBase.cpp:1195:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:41,680    1195 |   if (&(metaid) == NULL)
2025-09-08T01:42:41,680         |   ^~
2025-09-08T01:42:41,723   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T01:42:41,723   ./base/sbml/SBase.cpp:495:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:41,723     495 |   if (&rhs == NULL)
2025-09-08T01:42:41,723         |   ^~
2025-09-08T01:42:41,735   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T01:42:41,735   ./base/sbml/SBase.cpp:382:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:41,736     382 |   if (&orig == NULL)
2025-09-08T01:42:41,736         |   ^~
2025-09-08T01:42:41,747   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T01:42:41,747   ./base/sbml/SBase.cpp:1777:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:41,747    1777 |   if (&(notes) == NULL)
2025-09-08T01:42:41,747         |   ^~
2025-09-08T01:42:41,752   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T01:42:41,753   ./base/sbml/SBase.cpp:6144:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:42:41,753    6144 |   if (&node == NULL) return;
2025-09-08T01:42:41,753         |   ^~
2025-09-08T01:42:59,777   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:42:59,777                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:42:59,777                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:42:59,777                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2025-09-08T01:42:59,777   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:42:59,778      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:42:59,778         |                           ^~~~~~~~~~~~~~
2025-09-08T01:42:59,778   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:42:59,778                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:42:59,778                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:42:59,778                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:42:59,778                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2025-09-08T01:42:59,778   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:42:59,778     117 |     struct unary_function
2025-09-08T01:42:59,779         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:00,037   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T01:43:00,038   ./base/sbml/SimpleSpeciesReference.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:43:00,038      98 |   if (&orig == NULL)
2025-09-08T01:43:00,038         |             ^
2025-09-08T01:43:00,038   ./base/sbml/SimpleSpeciesReference.cpp:95:78: note: ‘orig’ declared here
2025-09-08T01:43:00,038      95 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2025-09-08T01:43:00,038         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:00,039   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T01:43:00,039   ./base/sbml/SimpleSpeciesReference.cpp:116:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:43:00,040     116 |   if (&rhs == NULL)
2025-09-08T01:43:00,040         |            ^
2025-09-08T01:43:00,040   ./base/sbml/SimpleSpeciesReference.cpp:114:89: note: ‘rhs’ declared here
2025-09-08T01:43:00,040     114 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2025-09-08T01:43:00,040         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:00,043   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T01:43:00,043   ./base/sbml/SimpleSpeciesReference.cpp:216:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:00,043     216 |   if (&(sid) == NULL)
2025-09-08T01:43:00,043         |              ^
2025-09-08T01:43:00,043   ./base/sbml/SimpleSpeciesReference.cpp:214:56: note: ‘sid’ declared here
2025-09-08T01:43:00,043     214 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2025-09-08T01:43:00,043         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:00,043   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T01:43:00,044   ./base/sbml/SimpleSpeciesReference.cpp:238:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:00,044     238 |   if (&(sid) == NULL)
2025-09-08T01:43:00,044         |              ^
2025-09-08T01:43:00,044   ./base/sbml/SimpleSpeciesReference.cpp:236:51: note: ‘sid’ declared here
2025-09-08T01:43:00,044     236 | SimpleSpeciesReference::setId (const std::string& sid)
2025-09-08T01:43:00,044         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:00,048   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T01:43:00,048   ./base/sbml/SimpleSpeciesReference.cpp:302:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:43:00,048     302 |   if (&(name) == NULL)
2025-09-08T01:43:00,048         |               ^
2025-09-08T01:43:00,048   ./base/sbml/SimpleSpeciesReference.cpp:300:53: note: ‘name’ declared here
2025-09-08T01:43:00,048     300 | SimpleSpeciesReference::setName (const std::string& name)
2025-09-08T01:43:00,048         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:00,506   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T01:43:00,506   ./base/sbml/SimpleSpeciesReference.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:00,506      98 |   if (&orig == NULL)
2025-09-08T01:43:00,506         |   ^~
2025-09-08T01:43:00,506   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T01:43:00,506   ./base/sbml/SimpleSpeciesReference.cpp:116:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:00,506     116 |   if (&rhs == NULL)
2025-09-08T01:43:00,506         |   ^~
2025-09-08T01:43:00,507   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T01:43:00,507   ./base/sbml/SimpleSpeciesReference.cpp:216:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:00,507     216 |   if (&(sid) == NULL)
2025-09-08T01:43:00,507         |   ^~
2025-09-08T01:43:00,507   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T01:43:00,508   ./base/sbml/SimpleSpeciesReference.cpp:238:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:00,508     238 |   if (&(sid) == NULL)
2025-09-08T01:43:00,508         |   ^~
2025-09-08T01:43:00,508   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T01:43:00,508   ./base/sbml/SimpleSpeciesReference.cpp:302:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:00,508     302 |   if (&(name) == NULL)
2025-09-08T01:43:00,508         |   ^~
2025-09-08T01:43:05,293   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:43:05,293                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:43:05,293                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:43:05,294                    from ./base/sbml/Species.cpp:42:
2025-09-08T01:43:05,294   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:05,294      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:43:05,294         |                           ^~~~~~~~~~~~~~
2025-09-08T01:43:05,294   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:43:05,294                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:43:05,294                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:43:05,294                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:43:05,294                    from ./base/sbml/Species.cpp:35:
2025-09-08T01:43:05,294   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:05,295     117 |     struct unary_function
2025-09-08T01:43:05,295         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:05,532   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T01:43:05,532   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:43:05,532     167 |   if (&orig == NULL)
2025-09-08T01:43:05,533         |             ^
2025-09-08T01:43:05,533   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2025-09-08T01:43:05,533     164 | Species::Species(const Species& orig) :
2025-09-08T01:43:05,533         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:05,535   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T01:43:05,535   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:43:05,535     204 |   if (&rhs == NULL)
2025-09-08T01:43:05,535         |            ^
2025-09-08T01:43:05,535   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2025-09-08T01:43:05,536     202 | Species& Species::operator=(const Species& rhs)
2025-09-08T01:43:05,536         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:05,542   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T01:43:05,542   ./base/sbml/Species.cpp:619:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:05,542     619 |   if (&(sid) == NULL)
2025-09-08T01:43:05,543         |              ^
2025-09-08T01:43:05,543   ./base/sbml/Species.cpp:608:36: note: ‘sid’ declared here
2025-09-08T01:43:05,543     608 | Species::setId (const std::string& sid)
2025-09-08T01:43:05,543         |                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:05,543   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T01:43:05,543   ./base/sbml/Species.cpp:644:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:43:05,543     644 |   if (&(name) == NULL)
2025-09-08T01:43:05,543         |               ^
2025-09-08T01:43:05,543   ./base/sbml/Species.cpp:639:38: note: ‘name’ declared here
2025-09-08T01:43:05,544     639 | Species::setName (const std::string& name)
2025-09-08T01:43:05,544         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:05,544   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T01:43:05,544   ./base/sbml/Species.cpp:674:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:05,544     674 |   if (&(sid) == NULL)
2025-09-08T01:43:05,544         |              ^
2025-09-08T01:43:05,545   ./base/sbml/Species.cpp:672:45: note: ‘sid’ declared here
2025-09-08T01:43:05,545     672 | Species::setSpeciesType (const std::string& sid)
2025-09-08T01:43:05,545         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:05,545   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T01:43:05,545   ./base/sbml/Species.cpp:701:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:05,546     701 |   if (&(sid) == NULL)
2025-09-08T01:43:05,546         |              ^
2025-09-08T01:43:05,546   ./base/sbml/Species.cpp:699:45: note: ‘sid’ declared here
2025-09-08T01:43:05,546     699 | Species::setCompartment (const std::string& sid)
2025-09-08T01:43:05,546         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:05,547   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T01:43:05,547   ./base/sbml/Species.cpp:760:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:05,547     760 |   if (&(sid) == NULL)
2025-09-08T01:43:05,547         |              ^
2025-09-08T01:43:05,547   ./base/sbml/Species.cpp:758:48: note: ‘sid’ declared here
2025-09-08T01:43:05,547     758 | Species::setSubstanceUnits (const std::string& sid)
2025-09-08T01:43:05,548         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:05,548   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T01:43:05,548   ./base/sbml/Species.cpp:782:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:05,548     782 |   if (&(sid) == NULL)
2025-09-08T01:43:05,548         |              ^
2025-09-08T01:43:05,548   ./base/sbml/Species.cpp:780:50: note: ‘sid’ declared here
2025-09-08T01:43:05,548     780 | Species::setSpatialSizeUnits (const std::string& sid)
2025-09-08T01:43:05,548         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:05,551   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T01:43:05,551   ./base/sbml/Species.cpp:893:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:05,551     893 |   if (&(sid) == NULL)
2025-09-08T01:43:05,551         |              ^
2025-09-08T01:43:05,551   ./base/sbml/Species.cpp:891:50: note: ‘sid’ declared here
2025-09-08T01:43:05,551     891 | Species::setConversionFactor (const std::string& sid)
2025-09-08T01:43:05,551         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:05,612   ./base/sbml/Species.cpp: At global scope:
2025-09-08T01:43:05,613   ./base/sbml/Species.cpp:2015:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:05,613    2015 | struct IdEqS : public unary_function<SBase*, bool>
2025-09-08T01:43:05,613         |                       ^~~~~~~~~~~~~~
2025-09-08T01:43:05,613   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:05,613     117 |     struct unary_function
2025-09-08T01:43:05,614         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:05,616   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T01:43:05,616   ./base/sbml/Species.cpp:2038:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:05,616    2038 |   if (&(sid) == NULL)
2025-09-08T01:43:05,616         |              ^
2025-09-08T01:43:05,617   ./base/sbml/Species.cpp:2034:40: note: ‘sid’ declared here
2025-09-08T01:43:05,617    2034 | ListOfSpecies::get (const std::string& sid) const
2025-09-08T01:43:05,617         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:05,620   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T01:43:05,620   ./base/sbml/Species.cpp:2065:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:05,620    2065 |   if (&(sid) != NULL)
2025-09-08T01:43:05,620         |              ^
2025-09-08T01:43:05,620   ./base/sbml/Species.cpp:2060:43: note: ‘sid’ declared here
2025-09-08T01:43:05,620    2060 | ListOfSpecies::remove (const std::string& sid)
2025-09-08T01:43:05,620         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:05,625   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2025-09-08T01:43:05,626   ./base/sbml/Species.cpp:2143:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:05,626    2143 |   catch (SBMLConstructorException)
2025-09-08T01:43:05,626         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:05,626   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:43:05,626   ./base/sbml/Species.cpp:2159:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:05,626    2159 |   catch (SBMLConstructorException)
2025-09-08T01:43:05,627         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:06,171   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T01:43:06,171   ./base/sbml/Species.cpp:2038:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,171    2038 |   if (&(sid) == NULL)
2025-09-08T01:43:06,171         |   ^~
2025-09-08T01:43:06,174   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T01:43:06,174   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,175     167 |   if (&orig == NULL)
2025-09-08T01:43:06,175         |   ^~
2025-09-08T01:43:06,175   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T01:43:06,175   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,175     204 |   if (&rhs == NULL)
2025-09-08T01:43:06,175         |   ^~
2025-09-08T01:43:06,178   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T01:43:06,178   ./base/sbml/Species.cpp:619:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,178     619 |   if (&(sid) == NULL)
2025-09-08T01:43:06,178         |   ^~
2025-09-08T01:43:06,178   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T01:43:06,178   ./base/sbml/Species.cpp:644:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,179     644 |   if (&(name) == NULL)
2025-09-08T01:43:06,179         |   ^~
2025-09-08T01:43:06,179   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T01:43:06,179   ./base/sbml/Species.cpp:674:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,179     674 |   if (&(sid) == NULL)
2025-09-08T01:43:06,179         |   ^~
2025-09-08T01:43:06,179   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T01:43:06,179   ./base/sbml/Species.cpp:701:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,179     701 |   if (&(sid) == NULL)
2025-09-08T01:43:06,179         |   ^~
2025-09-08T01:43:06,180   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T01:43:06,180   ./base/sbml/Species.cpp:760:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,180     760 |   if (&(sid) == NULL)
2025-09-08T01:43:06,180         |   ^~
2025-09-08T01:43:06,181   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T01:43:06,181   ./base/sbml/Species.cpp:782:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,181     782 |   if (&(sid) == NULL)
2025-09-08T01:43:06,181         |   ^~
2025-09-08T01:43:06,181   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T01:43:06,181   ./base/sbml/Species.cpp:893:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,182     893 |   if (&(sid) == NULL)
2025-09-08T01:43:06,182         |   ^~
2025-09-08T01:43:06,195   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T01:43:06,196   ./base/sbml/Species.cpp:2065:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:06,196    2065 |   if (&(sid) != NULL)
2025-09-08T01:43:06,196         |   ^~
2025-09-08T01:43:17,201   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:43:17,201                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:43:17,201                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:43:17,201                    from ./base/sbml/SpeciesReference.cpp:48:
2025-09-08T01:43:17,201   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:17,201      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:43:17,202         |                           ^~~~~~~~~~~~~~
2025-09-08T01:43:17,202   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:43:17,202                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:43:17,202                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:43:17,202                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:43:17,202                    from ./base/sbml/SpeciesReference.cpp:35:
2025-09-08T01:43:17,202   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:17,202     117 |     struct unary_function
2025-09-08T01:43:17,202         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:17,459   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T01:43:17,460   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:43:17,460     129 |   if (&orig == NULL)
2025-09-08T01:43:17,460         |             ^
2025-09-08T01:43:17,460   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2025-09-08T01:43:17,460     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2025-09-08T01:43:17,460         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:17,462   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T01:43:17,462   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:43:17,462     157 |   if (&rhs == NULL)
2025-09-08T01:43:17,462         |            ^
2025-09-08T01:43:17,462   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2025-09-08T01:43:17,462     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2025-09-08T01:43:17,462         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:17,501   ./base/sbml/SpeciesReference.cpp: At global scope:
2025-09-08T01:43:17,501   ./base/sbml/SpeciesReference.cpp:1245:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:17,501    1245 | struct IdEqSSR : public unary_function<SBase*, bool>
2025-09-08T01:43:17,501         |                         ^~~~~~~~~~~~~~
2025-09-08T01:43:17,501   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:17,501     117 |     struct unary_function
2025-09-08T01:43:17,501         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:17,505   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T01:43:17,505   ./base/sbml/SpeciesReference.cpp:1287:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:17,505    1287 |   if (&(sid) == NULL)
2025-09-08T01:43:17,505         |              ^
2025-09-08T01:43:17,505   ./base/sbml/SpeciesReference.cpp:1283:50: note: ‘sid’ declared here
2025-09-08T01:43:17,506    1283 | ListOfSpeciesReferences::get (const std::string& sid) const
2025-09-08T01:43:17,506         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:17,508   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T01:43:17,509   ./base/sbml/SpeciesReference.cpp:1315:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:17,509    1315 |   if (&(sid) != NULL)
2025-09-08T01:43:17,509         |              ^
2025-09-08T01:43:17,509   ./base/sbml/SpeciesReference.cpp:1310:53: note: ‘sid’ declared here
2025-09-08T01:43:17,509    1310 | ListOfSpeciesReferences::remove (const std::string& sid)
2025-09-08T01:43:17,509         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:17,521   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2025-09-08T01:43:17,521   ./base/sbml/SpeciesReference.cpp:1484:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:17,521    1484 |   catch (SBMLConstructorException)
2025-09-08T01:43:17,521         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:17,522   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:43:17,522   ./base/sbml/SpeciesReference.cpp:1500:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:17,522    1500 |   catch (SBMLConstructorException)
2025-09-08T01:43:17,522         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:17,523   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2025-09-08T01:43:17,523   ./base/sbml/SpeciesReference.cpp:1516:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:17,523    1516 |   catch (SBMLConstructorException)
2025-09-08T01:43:17,523         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:17,523   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:43:17,523   ./base/sbml/SpeciesReference.cpp:1532:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:17,524    1532 |   catch (SBMLConstructorException)
2025-09-08T01:43:17,524         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:18,049   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T01:43:18,049   ./base/sbml/SpeciesReference.cpp:1287:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:18,049    1287 |   if (&(sid) == NULL)
2025-09-08T01:43:18,049         |   ^~
2025-09-08T01:43:18,053   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T01:43:18,053   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:18,053     129 |   if (&orig == NULL)
2025-09-08T01:43:18,053         |   ^~
2025-09-08T01:43:18,053   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T01:43:18,053   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:18,054     157 |   if (&rhs == NULL)
2025-09-08T01:43:18,054         |   ^~
2025-09-08T01:43:18,067   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T01:43:18,068   ./base/sbml/SpeciesReference.cpp:1315:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:18,068    1315 |   if (&(sid) != NULL)
2025-09-08T01:43:18,068         |   ^~
2025-09-08T01:43:24,210   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:43:24,211                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:43:24,211                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:43:24,211                    from ./base/sbml/SpeciesType.cpp:41:
2025-09-08T01:43:24,211   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:24,211      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:43:24,211         |                           ^~~~~~~~~~~~~~
2025-09-08T01:43:24,211   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:43:24,211                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:43:24,211                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:43:24,212                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:43:24,212                    from ./base/sbml/SpeciesType.cpp:33:
2025-09-08T01:43:24,212   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:24,212     117 |     struct unary_function
2025-09-08T01:43:24,212         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:24,455   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T01:43:24,455   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:43:24,455      92 |   if (&orig == NULL)
2025-09-08T01:43:24,456         |             ^
2025-09-08T01:43:24,456   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2025-09-08T01:43:24,456      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2025-09-08T01:43:24,456         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:24,457   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T01:43:24,457   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:43:24,457     109 |   if (&rhs == NULL)
2025-09-08T01:43:24,457         |            ^
2025-09-08T01:43:24,457   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2025-09-08T01:43:24,457     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2025-09-08T01:43:24,457         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:24,461   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T01:43:24,461   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:24,461     206 |   if (&(sid) == NULL)
2025-09-08T01:43:24,461         |              ^
2025-09-08T01:43:24,461   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2025-09-08T01:43:24,461     195 | SpeciesType::setId (const std::string& sid)
2025-09-08T01:43:24,462         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:24,462   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T01:43:24,462   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:43:24,462     231 |   if (&(name) == NULL)
2025-09-08T01:43:24,462         |               ^
2025-09-08T01:43:24,462   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2025-09-08T01:43:24,462     226 | SpeciesType::setName (const std::string& name)
2025-09-08T01:43:24,462         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:24,473   ./base/sbml/SpeciesType.cpp: At global scope:
2025-09-08T01:43:24,473   ./base/sbml/SpeciesType.cpp:542:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:24,473     542 | struct IdEqST : public unary_function<SBase*, bool>
2025-09-08T01:43:24,473         |                        ^~~~~~~~~~~~~~
2025-09-08T01:43:24,473   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:24,473     117 |     struct unary_function
2025-09-08T01:43:24,473         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:24,476   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T01:43:24,476   ./base/sbml/SpeciesType.cpp:567:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:24,477     567 |   if (&(sid) == NULL)
2025-09-08T01:43:24,477         |              ^
2025-09-08T01:43:24,477   ./base/sbml/SpeciesType.cpp:563:45: note: ‘sid’ declared here
2025-09-08T01:43:24,477     563 | ListOfSpeciesTypes::get (const std::string& sid) const
2025-09-08T01:43:24,477         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:24,480   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T01:43:24,480   ./base/sbml/SpeciesType.cpp:595:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:24,480     595 |   if (&(sid) != NULL)
2025-09-08T01:43:24,480         |              ^
2025-09-08T01:43:24,480   ./base/sbml/SpeciesType.cpp:590:48: note: ‘sid’ declared here
2025-09-08T01:43:24,480     590 | ListOfSpeciesTypes::remove (const std::string& sid)
2025-09-08T01:43:24,481         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:24,485   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2025-09-08T01:43:24,485   ./base/sbml/SpeciesType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:24,485     674 |   catch (SBMLConstructorException)
2025-09-08T01:43:24,485         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:24,486   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:43:24,486   ./base/sbml/SpeciesType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:24,486     690 |   catch (SBMLConstructorException)
2025-09-08T01:43:24,486         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:24,977   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T01:43:24,977   ./base/sbml/SpeciesType.cpp:567:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:24,977     567 |   if (&(sid) == NULL)
2025-09-08T01:43:24,977         |   ^~
2025-09-08T01:43:24,980   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T01:43:24,980   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:24,980      92 |   if (&orig == NULL)
2025-09-08T01:43:24,980         |   ^~
2025-09-08T01:43:24,980   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T01:43:24,981   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:24,981     109 |   if (&rhs == NULL)
2025-09-08T01:43:24,981         |   ^~
2025-09-08T01:43:24,983   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T01:43:24,983   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:24,983     206 |   if (&(sid) == NULL)
2025-09-08T01:43:24,983         |   ^~
2025-09-08T01:43:24,983   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T01:43:24,983   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:24,983     231 |   if (&(name) == NULL)
2025-09-08T01:43:24,983         |   ^~
2025-09-08T01:43:24,991   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T01:43:24,991   ./base/sbml/SpeciesType.cpp:595:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:24,991     595 |   if (&(sid) != NULL)
2025-09-08T01:43:24,991         |   ^~
2025-09-08T01:43:29,838   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:43:29,838                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:43:29,838                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:43:29,838                    from ./base/sbml/StoichiometryMath.cpp:46:
2025-09-08T01:43:29,838   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:29,838      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:43:29,838         |                           ^~~~~~~~~~~~~~
2025-09-08T01:43:29,839   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:43:29,839                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:43:29,839                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:43:29,839                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:43:29,839                    from ./base/sbml/StoichiometryMath.cpp:33:
2025-09-08T01:43:29,839   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:29,839     117 |     struct unary_function
2025-09-08T01:43:29,839         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:30,084   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T01:43:30,084   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:43:30,084      98 |   if (&orig == NULL)
2025-09-08T01:43:30,085         |             ^
2025-09-08T01:43:30,085   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2025-09-08T01:43:30,085      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2025-09-08T01:43:30,085         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:30,086   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T01:43:30,086   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:43:30,086     120 |   if (&rhs == NULL)
2025-09-08T01:43:30,086         |            ^
2025-09-08T01:43:30,086   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2025-09-08T01:43:30,086     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2025-09-08T01:43:30,086         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:30,103   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2025-09-08T01:43:30,103   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:30,103     627 |   catch (SBMLConstructorException)
2025-09-08T01:43:30,103         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:30,103   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:43:30,104   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:30,104     643 |   catch (SBMLConstructorException)
2025-09-08T01:43:30,104         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:30,526   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T01:43:30,526   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:30,526      98 |   if (&orig == NULL)
2025-09-08T01:43:30,526         |   ^~
2025-09-08T01:43:30,526   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T01:43:30,526   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:30,527     120 |   if (&rhs == NULL)
2025-09-08T01:43:30,527         |   ^~
2025-09-08T01:43:38,384   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:43:38,384                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:43:38,384                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:43:38,384                    from ./base/sbml/Trigger.cpp:46:
2025-09-08T01:43:38,384   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:38,385      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:43:38,385         |                           ^~~~~~~~~~~~~~
2025-09-08T01:43:38,385   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:43:38,385                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:43:38,385                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:43:38,385                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:43:38,385                    from ./base/sbml/Trigger.cpp:33:
2025-09-08T01:43:38,385   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:38,385     117 |     struct unary_function
2025-09-08T01:43:38,386         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:38,629   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T01:43:38,629   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:43:38,629     106 |   if (&orig == NULL)
2025-09-08T01:43:38,629         |             ^
2025-09-08T01:43:38,629   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2025-09-08T01:43:38,629     102 | Trigger::Trigger (const Trigger& orig) :
2025-09-08T01:43:38,630         |                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:38,640   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T01:43:38,640   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:43:38,640     131 |   if (&rhs == NULL)
2025-09-08T01:43:38,640         |            ^
2025-09-08T01:43:38,641   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2025-09-08T01:43:38,641     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2025-09-08T01:43:38,641         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:38,650   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2025-09-08T01:43:38,650   ./base/sbml/Trigger.cpp:700:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:38,650     700 |   catch (SBMLConstructorException)
2025-09-08T01:43:38,650         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:38,651   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:43:38,651   ./base/sbml/Trigger.cpp:716:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:38,651     716 |   catch (SBMLConstructorException)
2025-09-08T01:43:38,651         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:39,078   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T01:43:39,078   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:39,079     106 |   if (&orig == NULL)
2025-09-08T01:43:39,079         |   ^~
2025-09-08T01:43:39,079   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T01:43:39,079   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:39,079     131 |   if (&rhs == NULL)
2025-09-08T01:43:39,079         |   ^~
2025-09-08T01:43:43,199   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:43:43,199                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:43:43,199                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:43:43,199                    from ./base/sbml/Unit.cpp:41:
2025-09-08T01:43:43,199   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:43,199      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:43:43,199         |                           ^~~~~~~~~~~~~~
2025-09-08T01:43:43,200   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:43:43,200                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:43:43,200                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:43:43,201                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:43:43,201                    from ./base/sbml/Unit.cpp:33:
2025-09-08T01:43:43,201   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:43,201     117 |     struct unary_function
2025-09-08T01:43:43,201         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:43,433   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T01:43:43,433   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:43:43,433     150 |   if (&orig == NULL)
2025-09-08T01:43:43,433         |             ^
2025-09-08T01:43:43,433   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2025-09-08T01:43:43,433     147 | Unit::Unit(const Unit& orig) :
2025-09-08T01:43:43,434         |            ~~~~~~~~~~~~^~~~
2025-09-08T01:43:43,435   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T01:43:43,436   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:43:43,436     179 |   if (&rhs == NULL)
2025-09-08T01:43:43,436         |            ^
2025-09-08T01:43:43,436   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2025-09-08T01:43:43,436     177 | Unit& Unit::operator=(const Unit& rhs)
2025-09-08T01:43:43,436         |                       ~~~~~~~~~~~~^~~
2025-09-08T01:43:43,525   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2025-09-08T01:43:43,525   ./base/sbml/Unit.cpp:2345:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:43,525    2345 |   catch (SBMLConstructorException)
2025-09-08T01:43:43,525         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:43,526   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:43:43,526   ./base/sbml/Unit.cpp:2361:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:43,526    2361 |   catch (SBMLConstructorException)
2025-09-08T01:43:43,526         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:44,036   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T01:43:44,036   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:44,036     150 |   if (&orig == NULL)
2025-09-08T01:43:44,036         |   ^~
2025-09-08T01:43:44,037   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T01:43:44,037   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:44,037     179 |   if (&rhs == NULL)
2025-09-08T01:43:44,037         |   ^~
2025-09-08T01:43:51,596   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:43:51,597                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:43:51,597                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:43:51,597                    from ./base/sbml/UnitDefinition.cpp:44:
2025-09-08T01:43:51,597   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:51,597      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:43:51,597         |                           ^~~~~~~~~~~~~~
2025-09-08T01:43:51,598   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:43:51,598                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:43:51,598                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:43:51,598                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T01:43:51,598                    from ./base/sbml/UnitDefinition.cpp:34:
2025-09-08T01:43:51,598   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:51,598     117 |     struct unary_function
2025-09-08T01:43:51,599         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:51,833   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T01:43:51,833   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:43:51,833     104 |   if (&orig == NULL)
2025-09-08T01:43:51,833         |             ^
2025-09-08T01:43:51,834   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2025-09-08T01:43:51,834     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2025-09-08T01:43:51,834         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:51,836   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T01:43:51,836   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:43:51,836     123 |   if (&rhs == NULL)
2025-09-08T01:43:51,836         |            ^
2025-09-08T01:43:51,836   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2025-09-08T01:43:51,836     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2025-09-08T01:43:51,836         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:51,843   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T01:43:51,843   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:51,844     262 |   if (&(sid) == NULL)
2025-09-08T01:43:51,844         |              ^
2025-09-08T01:43:51,844   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2025-09-08T01:43:51,844     251 | UnitDefinition::setId (const std::string& sid)
2025-09-08T01:43:51,844         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:51,845   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T01:43:51,845   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:43:51,845     287 |   if (&(name) == NULL)
2025-09-08T01:43:51,845         |               ^
2025-09-08T01:43:51,846   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2025-09-08T01:43:51,846     282 | UnitDefinition::setName (const std::string& name)
2025-09-08T01:43:51,846         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:51,897   ./base/sbml/UnitDefinition.cpp: At global scope:
2025-09-08T01:43:51,897   ./base/sbml/UnitDefinition.cpp:1783:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:43:51,898    1783 | struct IdEqUD : public unary_function<SBase*, bool>
2025-09-08T01:43:51,898         |                        ^~~~~~~~~~~~~~
2025-09-08T01:43:51,898   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:43:51,898     117 |     struct unary_function
2025-09-08T01:43:51,898         |            ^~~~~~~~~~~~~~
2025-09-08T01:43:51,901   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T01:43:51,902   ./base/sbml/UnitDefinition.cpp:1808:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:51,902    1808 |   if (&(sid) == NULL)
2025-09-08T01:43:51,902         |              ^
2025-09-08T01:43:51,902   ./base/sbml/UnitDefinition.cpp:1804:48: note: ‘sid’ declared here
2025-09-08T01:43:51,902    1804 | ListOfUnitDefinitions::get (const std::string& sid) const
2025-09-08T01:43:51,902         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:51,907   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T01:43:51,907   ./base/sbml/UnitDefinition.cpp:1850:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:43:51,907    1850 |   if (&(sid) != NULL)
2025-09-08T01:43:51,907         |              ^
2025-09-08T01:43:51,907   ./base/sbml/UnitDefinition.cpp:1845:51: note: ‘sid’ declared here
2025-09-08T01:43:51,907    1845 | ListOfUnitDefinitions::remove (const std::string& sid)
2025-09-08T01:43:51,907         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:43:51,913   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2025-09-08T01:43:51,913   ./base/sbml/UnitDefinition.cpp:1928:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:51,913    1928 |   catch (SBMLConstructorException)
2025-09-08T01:43:51,913         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:51,914   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T01:43:51,914   ./base/sbml/UnitDefinition.cpp:1944:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T01:43:51,914    1944 |   catch (SBMLConstructorException)
2025-09-08T01:43:51,915         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:43:52,446   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T01:43:52,447   ./base/sbml/UnitDefinition.cpp:1808:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:52,447    1808 |   if (&(sid) == NULL)
2025-09-08T01:43:52,447         |   ^~
2025-09-08T01:43:52,450   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T01:43:52,450   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:52,451     123 |   if (&rhs == NULL)
2025-09-08T01:43:52,451         |   ^~
2025-09-08T01:43:52,454   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T01:43:52,454   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:52,454     262 |   if (&(sid) == NULL)
2025-09-08T01:43:52,454         |   ^~
2025-09-08T01:43:52,455   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T01:43:52,455   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:52,455     287 |   if (&(name) == NULL)
2025-09-08T01:43:52,455         |   ^~
2025-09-08T01:43:52,466   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T01:43:52,466   ./base/sbml/UnitDefinition.cpp:1850:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:52,466    1850 |   if (&(sid) != NULL)
2025-09-08T01:43:52,466         |   ^~
2025-09-08T01:43:52,469   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T01:43:52,469   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:52,469     104 |   if (&orig == NULL)
2025-09-08T01:43:52,469         |   ^~
2025-09-08T01:43:59,197   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T01:43:59,198   ./base/sbml/annotation/CVTerm.cpp:165:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:43:59,198     165 |   if (&orig == NULL)
2025-09-08T01:43:59,198         |             ^
2025-09-08T01:43:59,198   ./base/sbml/annotation/CVTerm.cpp:163:30: note: ‘orig’ declared here
2025-09-08T01:43:59,198     163 | CVTerm::CVTerm(const CVTerm& orig)
2025-09-08T01:43:59,198         |                ~~~~~~~~~~~~~~^~~~
2025-09-08T01:43:59,201   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T01:43:59,201   ./base/sbml/annotation/CVTerm.cpp:200:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:43:59,201     200 |   if (&rhs == NULL)
2025-09-08T01:43:59,201         |            ^
2025-09-08T01:43:59,201   ./base/sbml/annotation/CVTerm.cpp:198:33: note: ‘rhs’ declared here
2025-09-08T01:43:59,202     198 | CVTerm::operator=(const CVTerm& rhs)
2025-09-08T01:43:59,202         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T01:43:59,206   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T01:43:59,206   ./base/sbml/annotation/CVTerm.cpp:328:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T01:43:59,207     328 |   if (&qualifier == NULL)
2025-09-08T01:43:59,207         |                  ^
2025-09-08T01:43:59,207   ./base/sbml/annotation/CVTerm.cpp:325:50: note: ‘qualifier’ declared here
2025-09-08T01:43:59,207     325 | CVTerm::setModelQualifierType(const std::string& qualifier)
2025-09-08T01:43:59,207         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:43:59,208   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T01:43:59,208   ./base/sbml/annotation/CVTerm.cpp:345:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T01:43:59,208     345 |   if (&qualifier == NULL)
2025-09-08T01:43:59,208         |                  ^
2025-09-08T01:43:59,209   ./base/sbml/annotation/CVTerm.cpp:342:55: note: ‘qualifier’ declared here
2025-09-08T01:43:59,209     342 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2025-09-08T01:43:59,209         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:43:59,211   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T01:43:59,211   ./base/sbml/annotation/CVTerm.cpp:465:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2025-09-08T01:43:59,211     465 |   if (&resource == NULL || resource.empty())
2025-09-08T01:43:59,211         |                 ^
2025-09-08T01:43:59,212   ./base/sbml/annotation/CVTerm.cpp:463:40: note: ‘resource’ declared here
2025-09-08T01:43:59,212     463 | CVTerm::addResource(const std::string& resource)
2025-09-08T01:43:59,212         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:43:59,570   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T01:43:59,570   ./base/sbml/annotation/CVTerm.cpp:328:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:59,571     328 |   if (&qualifier == NULL)
2025-09-08T01:43:59,571         |   ^~
2025-09-08T01:43:59,571   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T01:43:59,571   ./base/sbml/annotation/CVTerm.cpp:345:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:59,571     345 |   if (&qualifier == NULL)
2025-09-08T01:43:59,571         |   ^~
2025-09-08T01:43:59,574   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T01:43:59,574   ./base/sbml/annotation/CVTerm.cpp:165:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:59,574     165 |   if (&orig == NULL)
2025-09-08T01:43:59,574         |   ^~
2025-09-08T01:43:59,575   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T01:43:59,576   ./base/sbml/annotation/CVTerm.cpp:200:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:59,576     200 |   if (&rhs == NULL)
2025-09-08T01:43:59,576         |   ^~
2025-09-08T01:43:59,577   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T01:43:59,577   ./base/sbml/annotation/CVTerm.cpp:465:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:43:59,577     465 |   if (&resource == NULL || resource.empty())
2025-09-08T01:43:59,577         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T01:44:02,488   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T01:44:02,488   ./base/sbml/annotation/Date.cpp:80:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T01:44:02,488      80 |   if (&(date) == NULL)
2025-09-08T01:44:02,489         |               ^
2025-09-08T01:44:02,489   ./base/sbml/annotation/Date.cpp:77:32: note: ‘date’ declared here
2025-09-08T01:44:02,489      77 | Date::Date (const std::string& date) :
2025-09-08T01:44:02,489         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:44:02,490   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T01:44:02,491   ./base/sbml/annotation/Date.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:44:02,491      97 |   if (&orig == NULL)
2025-09-08T01:44:02,491         |             ^
2025-09-08T01:44:02,491   ./base/sbml/annotation/Date.cpp:95:24: note: ‘orig’ declared here
2025-09-08T01:44:02,491      95 | Date::Date(const Date& orig)
2025-09-08T01:44:02,491         |            ~~~~~~~~~~~~^~~~
2025-09-08T01:44:02,493   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T01:44:02,493   ./base/sbml/annotation/Date.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:44:02,494     125 |   if (&rhs == NULL)
2025-09-08T01:44:02,494         |            ^
2025-09-08T01:44:02,494   ./base/sbml/annotation/Date.cpp:123:35: note: ‘rhs’ declared here
2025-09-08T01:44:02,494     123 | Date& Date::operator=(const Date& rhs)
2025-09-08T01:44:02,494         |                       ~~~~~~~~~~~~^~~
2025-09-08T01:44:02,499   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T01:44:02,500   ./base/sbml/annotation/Date.cpp:395:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T01:44:02,500     395 |   if (&(date) == NULL)
2025-09-08T01:44:02,500         |               ^
2025-09-08T01:44:02,500   ./base/sbml/annotation/Date.cpp:389:43: note: ‘date’ declared here
2025-09-08T01:44:02,500     389 | Date::setDateAsString (const std::string& date)
2025-09-08T01:44:02,500         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:44:02,864   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T01:44:02,864   ./base/sbml/annotation/Date.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:02,864      97 |   if (&orig == NULL)
2025-09-08T01:44:02,864         |   ^~
2025-09-08T01:44:02,865   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T01:44:02,865   ./base/sbml/annotation/Date.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:02,865     125 |   if (&rhs == NULL)
2025-09-08T01:44:02,865         |   ^~
2025-09-08T01:44:02,867   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T01:44:02,867   ./base/sbml/annotation/Date.cpp:80:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:02,867      80 |   if (&(date) == NULL)
2025-09-08T01:44:02,867         |   ^~
2025-09-08T01:44:02,870   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T01:44:02,870   ./base/sbml/annotation/Date.cpp:395:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:02,870     395 |   if (&(date) == NULL)
2025-09-08T01:44:02,871         |   ^~
2025-09-08T01:44:03,055   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2025-09-08T01:44:03,055   ./base/sbml/annotation/Date.cpp:449:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T01:44:03,055     449 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T01:44:03,055         |                        ^~
2025-09-08T01:44:03,055   ./base/sbml/annotation/Date.cpp:449:20: note: directive argument in the range [10, 4294967295]
2025-09-08T01:44:03,055     449 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T01:44:03,055         |                    ^~~~~~~~
2025-09-08T01:44:03,056   ./base/sbml/annotation/Date.cpp:449:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2025-09-08T01:44:03,056     449 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T01:44:03,056         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:44:03,056   ./base/sbml/annotation/Date.cpp:455:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T01:44:03,056     455 |     sprintf(cdate, "%uT", mDay);
2025-09-08T01:44:03,056         |                       ^
2025-09-08T01:44:03,056   ./base/sbml/annotation/Date.cpp:455:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T01:44:03,057     455 |     sprintf(cdate, "%uT", mDay);
2025-09-08T01:44:03,057         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T01:44:03,057   ./base/sbml/annotation/Date.cpp:461:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T01:44:03,057     461 |     sprintf(cdate, "%u:", mHour);
2025-09-08T01:44:03,057         |                       ^
2025-09-08T01:44:03,057   ./base/sbml/annotation/Date.cpp:461:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T01:44:03,057     461 |     sprintf(cdate, "%u:", mHour);
2025-09-08T01:44:03,058         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:44:03,058   ./base/sbml/annotation/Date.cpp:467:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T01:44:03,058     467 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T01:44:03,058         |                       ^
2025-09-08T01:44:03,058   ./base/sbml/annotation/Date.cpp:467:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T01:44:03,058     467 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T01:44:03,058         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:44:03,059   ./base/sbml/annotation/Date.cpp:473:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T01:44:03,059     473 |     sprintf(cdate, "%u", mSecond);
2025-09-08T01:44:03,059         |                       ^
2025-09-08T01:44:03,059   ./base/sbml/annotation/Date.cpp:473:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T01:44:03,059     473 |     sprintf(cdate, "%u", mSecond);
2025-09-08T01:44:03,059         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:44:03,060   ./base/sbml/annotation/Date.cpp:492:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T01:44:03,060     492 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T01:44:03,060         |                         ^
2025-09-08T01:44:03,060   ./base/sbml/annotation/Date.cpp:492:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T01:44:03,060     492 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T01:44:03,060         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:44:03,061   ./base/sbml/annotation/Date.cpp:498:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T01:44:03,061     498 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T01:44:03,061         |                         ^
2025-09-08T01:44:03,061   ./base/sbml/annotation/Date.cpp:498:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T01:44:03,061     498 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T01:44:03,061         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:44:05,678   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T01:44:05,678   ./base/sbml/annotation/ModelCreator.cpp:137:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:44:05,678     137 |   if (&orig == NULL)
2025-09-08T01:44:05,678         |             ^
2025-09-08T01:44:05,678   ./base/sbml/annotation/ModelCreator.cpp:135:48: note: ‘orig’ declared here
2025-09-08T01:44:05,678     135 | ModelCreator::ModelCreator(const ModelCreator& orig)
2025-09-08T01:44:05,679         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:44:05,681   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T01:44:05,681   ./base/sbml/annotation/ModelCreator.cpp:164:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:44:05,681     164 |   if (&rhs == NULL)
2025-09-08T01:44:05,681         |            ^
2025-09-08T01:44:05,681   ./base/sbml/annotation/ModelCreator.cpp:162:59: note: ‘rhs’ declared here
2025-09-08T01:44:05,681     162 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2025-09-08T01:44:05,681         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:44:05,684   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T01:44:05,684   ./base/sbml/annotation/ModelCreator.cpp:238:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:44:05,684     238 |   if (&(name) == NULL)
2025-09-08T01:44:05,684         |               ^
2025-09-08T01:44:05,685   ./base/sbml/annotation/ModelCreator.cpp:236:48: note: ‘name’ declared here
2025-09-08T01:44:05,685     236 | ModelCreator::setFamilyName(const std::string& name)
2025-09-08T01:44:05,685         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:44:05,686   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T01:44:05,686   ./base/sbml/annotation/ModelCreator.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:44:05,686     257 |   if (&(name) == NULL)
2025-09-08T01:44:05,686         |               ^
2025-09-08T01:44:05,686   ./base/sbml/annotation/ModelCreator.cpp:255:47: note: ‘name’ declared here
2025-09-08T01:44:05,686     255 | ModelCreator::setGivenName(const std::string& name)
2025-09-08T01:44:05,686         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:44:05,687   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T01:44:05,687   ./base/sbml/annotation/ModelCreator.cpp:276:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2025-09-08T01:44:05,688     276 |   if (&(email) == NULL)
2025-09-08T01:44:05,688         |                ^
2025-09-08T01:44:05,688   ./base/sbml/annotation/ModelCreator.cpp:274:43: note: ‘email’ declared here
2025-09-08T01:44:05,688     274 | ModelCreator::setEmail(const std::string& email)
2025-09-08T01:44:05,688         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:44:05,689   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T01:44:05,689   ./base/sbml/annotation/ModelCreator.cpp:292:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2025-09-08T01:44:05,689     292 |   if (&(organization) == NULL)
2025-09-08T01:44:05,689         |                       ^
2025-09-08T01:44:05,689   ./base/sbml/annotation/ModelCreator.cpp:290:50: note: ‘organization’ declared here
2025-09-08T01:44:05,689     290 | ModelCreator::setOrganization(const std::string& organization)
2025-09-08T01:44:05,690         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T01:44:06,037   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T01:44:06,037   ./base/sbml/annotation/ModelCreator.cpp:238:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:06,037     238 |   if (&(name) == NULL)
2025-09-08T01:44:06,037         |   ^~
2025-09-08T01:44:06,038   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T01:44:06,038   ./base/sbml/annotation/ModelCreator.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:06,038     257 |   if (&(name) == NULL)
2025-09-08T01:44:06,038         |   ^~
2025-09-08T01:44:06,039   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T01:44:06,039   ./base/sbml/annotation/ModelCreator.cpp:276:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:06,039     276 |   if (&(email) == NULL)
2025-09-08T01:44:06,039         |   ^~
2025-09-08T01:44:06,039   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T01:44:06,039   ./base/sbml/annotation/ModelCreator.cpp:292:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:06,039     292 |   if (&(organization) == NULL)
2025-09-08T01:44:06,040         |   ^~
2025-09-08T01:44:06,046   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T01:44:06,046   ./base/sbml/annotation/ModelCreator.cpp:137:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:06,046     137 |   if (&orig == NULL)
2025-09-08T01:44:06,046         |   ^~
2025-09-08T01:44:06,047   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T01:44:06,047   ./base/sbml/annotation/ModelCreator.cpp:164:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:06,048     164 |   if (&rhs == NULL)
2025-09-08T01:44:06,048         |   ^~
2025-09-08T01:44:08,876   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T01:44:08,876   ./base/sbml/annotation/ModelHistory.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:44:08,876      92 |   if (&orig == NULL)
2025-09-08T01:44:08,876         |             ^
2025-09-08T01:44:08,876   ./base/sbml/annotation/ModelHistory.cpp:90:48: note: ‘orig’ declared here
2025-09-08T01:44:08,876      90 | ModelHistory::ModelHistory(const ModelHistory& orig)
2025-09-08T01:44:08,876         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:44:08,879   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T01:44:08,879   ./base/sbml/annotation/ModelHistory.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:44:08,879     128 |   if (&rhs == NULL)
2025-09-08T01:44:08,879         |            ^
2025-09-08T01:44:08,880   ./base/sbml/annotation/ModelHistory.cpp:126:45: note: ‘rhs’ declared here
2025-09-08T01:44:08,880     126 | ModelHistory::operator=(const ModelHistory& rhs)
2025-09-08T01:44:08,880         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:44:09,227   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T01:44:09,227   ./base/sbml/annotation/ModelHistory.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:09,228      92 |   if (&orig == NULL)
2025-09-08T01:44:09,228         |   ^~
2025-09-08T01:44:09,229   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T01:44:09,229   ./base/sbml/annotation/ModelHistory.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:09,229     128 |   if (&rhs == NULL)
2025-09-08T01:44:09,229         |   ^~
2025-09-08T01:44:12,339   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:44:12,340                    from ./base//sbml/Model.h:446,
2025-09-08T01:44:12,340                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:39:
2025-09-08T01:44:12,340   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:44:12,340      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:44:12,340         |                           ^~~~~~~~~~~~~~
2025-09-08T01:44:12,341   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:44:12,341                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:44:12,341                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:44:12,341                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2025-09-08T01:44:12,341   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:44:12,341     117 |     struct unary_function
2025-09-08T01:44:12,341         |            ^~~~~~~~~~~~~~
2025-09-08T01:44:12,551   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T01:44:12,551   ./base/sbml/annotation/RDFAnnotationParser.cpp:72:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:44:12,551      72 |   if (&element == NULL || stream == NULL) return;
2025-09-08T01:44:12,551         |                ^
2025-09-08T01:44:12,552   ./base/sbml/annotation/RDFAnnotationParser.cpp:69:51: note: ‘element’ declared here
2025-09-08T01:44:12,552      69 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T01:44:12,552         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:44:13,063   ./base/sbml/annotation/RDFAnnotationParser.cpp:72:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:13,063      72 |   if (&element == NULL || stream == NULL) return;
2025-09-08T01:44:13,063         |                ^
2025-09-08T01:44:34,512   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T01:44:34,512   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:44:34,512     110 |   if (&orig == NULL)
2025-09-08T01:44:34,512         |             ^
2025-09-08T01:44:34,512   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2025-09-08T01:44:34,512     108 |   (const ConversionOption& orig)
2025-09-08T01:44:34,512         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:44:34,513   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T01:44:34,513   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:44:34,514     128 |   if (&rhs == NULL)
2025-09-08T01:44:34,514         |            ^
2025-09-08T01:44:34,514   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2025-09-08T01:44:34,514     126 | ConversionOption::operator=(const ConversionOption& rhs)
2025-09-08T01:44:34,514         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:44:34,904   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T01:44:34,904   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:34,904     110 |   if (&orig == NULL)
2025-09-08T01:44:34,904         |   ^~
2025-09-08T01:44:34,905   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T01:44:34,905   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:34,905     128 |   if (&rhs == NULL)
2025-09-08T01:44:34,905         |   ^~
2025-09-08T01:44:39,000   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T01:44:39,000   ./base/sbml/conversion/ConversionProperties.cpp:56:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:44:39,001      56 |   if (&orig == NULL)
2025-09-08T01:44:39,001         |             ^
2025-09-08T01:44:39,001   ./base/sbml/conversion/ConversionProperties.cpp:53:72: note: ‘orig’ declared here
2025-09-08T01:44:39,001      53 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2025-09-08T01:44:39,001         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:44:39,038   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T01:44:39,038   ./base/sbml/conversion/ConversionProperties.cpp:79:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:44:39,039      79 |   if (&rhs == NULL)
2025-09-08T01:44:39,039         |            ^
2025-09-08T01:44:39,039   ./base/sbml/conversion/ConversionProperties.cpp:77:61: note: ‘rhs’ declared here
2025-09-08T01:44:39,039      77 | ConversionProperties::operator=(const ConversionProperties& rhs)
2025-09-08T01:44:39,039         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:44:39,050   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T01:44:39,050   ./base/sbml/conversion/ConversionProperties.cpp:231:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2025-09-08T01:44:39,051     231 |   if (&option == NULL) return;
2025-09-08T01:44:39,051         |               ^
2025-09-08T01:44:39,051   ./base/sbml/conversion/ConversionProperties.cpp:229:57: note: ‘option’ declared here
2025-09-08T01:44:39,051     229 | ConversionProperties::addOption(const ConversionOption &option)
2025-09-08T01:44:39,051         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:44:39,549   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T01:44:39,549   ./base/sbml/conversion/ConversionProperties.cpp:56:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:39,549      56 |   if (&orig == NULL)
2025-09-08T01:44:39,549         |   ^~
2025-09-08T01:44:39,550   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T01:44:39,550   ./base/sbml/conversion/ConversionProperties.cpp:79:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:39,550      79 |   if (&rhs == NULL)
2025-09-08T01:44:39,550         |   ^~
2025-09-08T01:44:39,550   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T01:44:39,550   ./base/sbml/conversion/ConversionProperties.cpp:231:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:39,550     231 |   if (&option == NULL) return;
2025-09-08T01:44:39,550         |   ^~
2025-09-08T01:44:44,928   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:44:44,928                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:44:44,928                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:44:44,928                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:44:44,928                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:44:44,928                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2025-09-08T01:44:44,928                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2025-09-08T01:44:44,928   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:44:44,928      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:44:44,929         |                           ^~~~~~~~~~~~~~
2025-09-08T01:44:44,929   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:44:44,929                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:44:44,929                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:44:44,929                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2025-09-08T01:44:44,930   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:44:44,930     117 |     struct unary_function
2025-09-08T01:44:44,930         |            ^~~~~~~~~~~~~~
2025-09-08T01:44:48,498   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:44:48,498                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:44:48,498                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:44:48,498                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:44:48,498                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:44:48,499                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2025-09-08T01:44:48,499   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:44:48,499      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:44:48,499         |                           ^~~~~~~~~~~~~~
2025-09-08T01:44:48,499   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:44:48,500                    from ./base//sbml/conversion/SBMLConverter.h:52:
2025-09-08T01:44:48,500   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:44:48,500     117 |     struct unary_function
2025-09-08T01:44:48,500         |            ^~~~~~~~~~~~~~
2025-09-08T01:44:48,759   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T01:44:48,759   ./base/sbml/conversion/SBMLConverter.cpp:67:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:44:48,759      67 |   if (&orig == NULL)
2025-09-08T01:44:48,759         |             ^
2025-09-08T01:44:48,760   ./base/sbml/conversion/SBMLConverter.cpp:62:51: note: ‘orig’ declared here
2025-09-08T01:44:48,760      62 | SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2025-09-08T01:44:48,760         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:44:48,762   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T01:44:48,762   ./base/sbml/conversion/SBMLConverter.cpp:103:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:44:48,762     103 |   if (&rhs == NULL)
2025-09-08T01:44:48,762         |            ^
2025-09-08T01:44:48,762   ./base/sbml/conversion/SBMLConverter.cpp:101:47: note: ‘rhs’ declared here
2025-09-08T01:44:48,762     101 | SBMLConverter::operator=(const SBMLConverter& rhs)
2025-09-08T01:44:48,762         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:44:49,176   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T01:44:49,176   ./base/sbml/conversion/SBMLConverter.cpp:67:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:49,176      67 |   if (&orig == NULL)
2025-09-08T01:44:49,176         |   ^~
2025-09-08T01:44:49,177   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T01:44:49,177   ./base/sbml/conversion/SBMLConverter.cpp:103:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:49,177     103 |   if (&rhs == NULL)
2025-09-08T01:44:49,177         |   ^~
2025-09-08T01:44:52,371   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:44:52,371                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:44:52,371                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:44:52,371                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:44:52,371                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:44:52,371                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2025-09-08T01:44:52,371                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2025-09-08T01:44:52,371   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:44:52,371      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:44:52,371         |                           ^~~~~~~~~~~~~~
2025-09-08T01:44:52,372   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T01:44:52,372                    from /usr/include/c++/14/vector:68,
2025-09-08T01:44:52,372                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2025-09-08T01:44:52,372   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:44:52,372     117 |     struct unary_function
2025-09-08T01:44:52,373         |            ^~~~~~~~~~~~~~
2025-09-08T01:44:56,259   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:44:56,259                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:44:56,259                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:44:56,259                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:44:56,259                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:44:56,259                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2025-09-08T01:44:56,259                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2025-09-08T01:44:56,259   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:44:56,260      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:44:56,260         |                           ^~~~~~~~~~~~~~
2025-09-08T01:44:56,260   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:44:56,260                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:44:56,260                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:44:56,260                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2025-09-08T01:44:56,260   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:44:56,260     117 |     struct unary_function
2025-09-08T01:44:56,261         |            ^~~~~~~~~~~~~~
2025-09-08T01:44:56,520   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:44:56,520   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:44:56,520     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T01:44:56,520         |              ^
2025-09-08T01:44:56,520   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:110:80: note: ‘props’ declared here
2025-09-08T01:44:56,520     110 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:44:56,521         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:44:56,526   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2025-09-08T01:44:56,526   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:216:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2025-09-08T01:44:56,526     216 |           ->isSetMath(), &idsToSkip)
2025-09-08T01:44:56,526         |                          ^~~~~~~~~~
2025-09-08T01:44:56,526   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:153:10: note: ‘idsToSkip’ declared here
2025-09-08T01:44:56,527     153 |   IdList idsToSkip;
2025-09-08T01:44:56,527         |          ^~~~~~~~~
2025-09-08T01:44:56,957   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:44:56,957   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:44:56,957     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T01:44:56,957         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:00,553   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:00,553                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:00,553                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:00,553                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:45:00,553                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:45:00,553                    from ./base//sbml/conversion/SBMLIdConverter.h:78,
2025-09-08T01:45:00,554                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2025-09-08T01:45:00,554   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:00,554      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:00,554         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:00,554   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:00,554                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:45:00,554                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:45:00,554                    from ./base//sbml/conversion/SBMLIdConverter.h:77:
2025-09-08T01:45:00,554   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:00,555     117 |     struct unary_function
2025-09-08T01:45:00,555         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:00,826   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:00,826   ./base/sbml/conversion/SBMLIdConverter.cpp:115:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:45:00,826     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T01:45:00,826         |              ^
2025-09-08T01:45:00,826   ./base/sbml/conversion/SBMLIdConverter.cpp:113:64: note: ‘props’ declared here
2025-09-08T01:45:00,826     113 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:45:00,827         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:45:01,381   ./base/sbml/conversion/SBMLIdConverter.cpp:115:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:01,381     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T01:45:01,382         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:05,905   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:05,905                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:05,905                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:05,905                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:45:05,905                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:45:05,905                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:56,
2025-09-08T01:45:05,906                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2025-09-08T01:45:05,906   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:05,906      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:05,906         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:05,906   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:05,906                    from ./base//sbml/conversion/SBMLConverter.h:52:
2025-09-08T01:45:05,906   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:05,906     117 |     struct unary_function
2025-09-08T01:45:05,906         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:06,173   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T01:45:06,173   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:45:06,173      91 |   if (&rhs == NULL)
2025-09-08T01:45:06,173         |            ^
2025-09-08T01:45:06,173   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2025-09-08T01:45:06,173      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2025-09-08T01:45:06,173         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:45:06,175   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:06,176   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:45:06,176     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T01:45:06,176         |              ^
2025-09-08T01:45:06,176   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:132:72: note: ‘props’ declared here
2025-09-08T01:45:06,176     132 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:45:06,176         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:45:06,605   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T01:45:06,605   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:06,605      91 |   if (&rhs == NULL)
2025-09-08T01:45:06,605         |   ^~
2025-09-08T01:45:06,606   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:06,606   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:06,606     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T01:45:06,606         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:10,174   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:10,174                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:10,174                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:10,174                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:45:10,175                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:45:10,175                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:89,
2025-09-08T01:45:10,175                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2025-09-08T01:45:10,175   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:10,175      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:10,175         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:10,175   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:10,175                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:45:10,175                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:45:10,176                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:88:
2025-09-08T01:45:10,176   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:10,176     117 |     struct unary_function
2025-09-08T01:45:10,176         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:10,444   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:10,444   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:45:10,444     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T01:45:10,444         |              ^
2025-09-08T01:45:10,444   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:107:79: note: ‘props’ declared here
2025-09-08T01:45:10,445     107 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:45:10,445         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:45:10,856   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:10,856     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T01:45:10,856         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:14,010   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:14,010                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:14,010                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:14,010                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:45:14,010                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:45:14,011                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:73,
2025-09-08T01:45:14,011                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2025-09-08T01:45:14,011   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:14,011      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:14,011         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:14,012   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:14,012                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:45:14,012                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:45:14,012                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:72:
2025-09-08T01:45:14,012   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:14,012     117 |     struct unary_function
2025-09-08T01:45:14,012         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:14,341   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T01:45:14,341   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:45:14,341      89 |   if (&rhs == NULL)
2025-09-08T01:45:14,341         |            ^
2025-09-08T01:45:14,341   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2025-09-08T01:45:14,341      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2025-09-08T01:45:14,342         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:45:14,344   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:14,345   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:45:14,345     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T01:45:14,345         |              ^
2025-09-08T01:45:14,345   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:135:74: note: ‘props’ declared here
2025-09-08T01:45:14,345     135 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:45:14,345         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:45:14,837   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T01:45:14,837   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:14,837      89 |   if (&rhs == NULL)
2025-09-08T01:45:14,837         |   ^~
2025-09-08T01:45:14,838   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:14,838   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:14,838     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T01:45:14,838         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:19,726   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:19,726                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:19,726                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:19,726                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:45:19,727                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:45:19,727                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:65,
2025-09-08T01:45:19,727                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2025-09-08T01:45:19,727   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:19,727      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:19,727         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:19,728   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:19,728                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:45:19,728                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:45:19,728                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:64:
2025-09-08T01:45:19,728   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:19,728     117 |     struct unary_function
2025-09-08T01:45:19,728         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:20,002   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:20,002   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:45:20,003     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T01:45:20,003         |              ^
2025-09-08T01:45:20,003   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:114:76: note: ‘props’ declared here
2025-09-08T01:45:20,003     114 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:45:20,003         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:45:20,457   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:20,457     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T01:45:20,457         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:23,999   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:23,999                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:24,000                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:24,000                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:45:24,000                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:45:24,000                    from ./base//sbml/conversion/SBMLReactionConverter.h:59,
2025-09-08T01:45:24,000                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2025-09-08T01:45:24,000   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:24,000      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:24,000         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:24,000   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:24,001                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:45:24,001                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:45:24,001                    from ./base//sbml/conversion/SBMLReactionConverter.h:58:
2025-09-08T01:45:24,001   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:24,001     117 |     struct unary_function
2025-09-08T01:45:24,001         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:24,284   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:24,285   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:45:24,285     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T01:45:24,285         |              ^
2025-09-08T01:45:24,285   ./base/sbml/conversion/SBMLReactionConverter.cpp:116:70: note: ‘props’ declared here
2025-09-08T01:45:24,285     116 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:45:24,285         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:45:24,799   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:24,799     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T01:45:24,800         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:29,359   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:29,359                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:29,359                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:29,359                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:45:29,359                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:45:29,360                    from ./base//sbml/conversion/SBMLRuleConverter.h:88,
2025-09-08T01:45:29,360                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2025-09-08T01:45:29,360   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:29,360      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:29,360         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:29,360   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:29,360                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:45:29,360                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:45:29,360                    from ./base//sbml/conversion/SBMLRuleConverter.h:87:
2025-09-08T01:45:29,361   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:29,361     117 |     struct unary_function
2025-09-08T01:45:29,361         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:29,628   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:29,628   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:45:29,629     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T01:45:29,629         |              ^
2025-09-08T01:45:29,629   ./base/sbml/conversion/SBMLRuleConverter.cpp:111:68: note: ‘props’ declared here
2025-09-08T01:45:29,629     111 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:45:29,629         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:45:30,488   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:30,489     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T01:45:30,489         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:38,480   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:38,480                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:38,480                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:38,480                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:45:38,481                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:45:38,481                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:61,
2025-09-08T01:45:38,481                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2025-09-08T01:45:38,481   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:38,481      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:38,481         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:38,481   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:38,481                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:45:38,481                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:45:38,482                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:60:
2025-09-08T01:45:38,482   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:38,482     117 |     struct unary_function
2025-09-08T01:45:38,482         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:38,749   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T01:45:38,749   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:45:38,750      86 |   if (&rhs == NULL)
2025-09-08T01:45:38,750         |            ^
2025-09-08T01:45:38,750   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2025-09-08T01:45:38,750      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2025-09-08T01:45:38,750         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:45:38,753   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:38,753   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:132:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:45:38,753     132 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T01:45:38,754         |              ^
2025-09-08T01:45:38,754   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:130:74: note: ‘props’ declared here
2025-09-08T01:45:38,754     130 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:45:38,754         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:45:39,175   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T01:45:39,175   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:39,175      86 |   if (&rhs == NULL)
2025-09-08T01:45:39,175         |   ^~
2025-09-08T01:45:39,175   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:39,176   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:132:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:39,176     132 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T01:45:39,176         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:42,643   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:42,644                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:42,644                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:42,644                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:45:42,644                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:45:42,644                    from ./base//sbml/conversion/SBMLUnitsConverter.h:71,
2025-09-08T01:45:42,644                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2025-09-08T01:45:42,644   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:42,644      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:42,645         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:42,645   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:42,645                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:45:42,645                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:45:42,645                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70:
2025-09-08T01:45:42,645   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:42,645     117 |     struct unary_function
2025-09-08T01:45:42,645         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:42,943   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T01:45:42,944   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:45:42,944      91 |   if (&rhs == NULL)
2025-09-08T01:45:42,944         |            ^
2025-09-08T01:45:42,944   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2025-09-08T01:45:42,944      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2025-09-08T01:45:42,944         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:45:42,947   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:42,947   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:45:42,947     136 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T01:45:42,947         |              ^
2025-09-08T01:45:42,947   ./base/sbml/conversion/SBMLUnitsConverter.cpp:134:67: note: ‘props’ declared here
2025-09-08T01:45:42,948     134 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:45:42,948         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:45:43,600   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T01:45:43,600   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:43,600      91 |   if (&rhs == NULL)
2025-09-08T01:45:43,600         |   ^~
2025-09-08T01:45:43,601   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:45:43,601   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:43,601     136 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T01:45:43,601         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:45:50,864   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:50,864                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:50,864                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:50,864                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:45:50,865                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:45:50,865                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T01:45:50,865                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2025-09-08T01:45:50,865   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:50,865      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:50,865         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:50,865   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:50,865                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:45:50,865                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:45:50,866                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:44,
2025-09-08T01:45:50,866                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2025-09-08T01:45:50,866   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:50,866     117 |     struct unary_function
2025-09-08T01:45:50,866         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:54,492   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:54,492                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:54,492                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:54,492                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2025-09-08T01:45:54,492                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2025-09-08T01:45:54,492   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:54,492      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:54,492         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:54,493   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:54,493                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:45:54,493                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:45:54,493                    from ./base//sbml/extension/SBMLDocumentPlugin.h:57:
2025-09-08T01:45:54,493   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:54,494     117 |     struct unary_function
2025-09-08T01:45:54,494         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:54,772   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T01:45:54,772   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T01:45:54,772     119 |   if (&attributes == NULL) return;
2025-09-08T01:45:54,773         |                   ^
2025-09-08T01:45:54,773   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2025-09-08T01:45:54,773     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2025-09-08T01:45:54,773         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T01:45:54,774   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T01:45:54,774   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T01:45:54,774     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:45:54,775         |                   ^
2025-09-08T01:45:54,775   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2025-09-08T01:45:54,775     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T01:45:54,775         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T01:45:54,775   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T01:45:54,775     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:45:54,775         |                                                  ^
2025-09-08T01:45:54,776   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2025-09-08T01:45:54,776     133 |                                     const ExpectedAttributes& expectedAttributes)
2025-09-08T01:45:54,776         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T01:45:54,779   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2025-09-08T01:45:54,779   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:45:54,779     169 |   if (&stream == NULL) return;
2025-09-08T01:45:54,779         |               ^
2025-09-08T01:45:54,779   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2025-09-08T01:45:54,779     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2025-09-08T01:45:54,779         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:45:55,211   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:55,211     169 |   if (&stream == NULL) return;
2025-09-08T01:45:55,211         |   ^~
2025-09-08T01:45:55,215   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T01:45:55,215   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:55,215     119 |   if (&attributes == NULL) return;
2025-09-08T01:45:55,215         |   ^~
2025-09-08T01:45:55,216   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T01:45:55,216   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:55,216     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:45:55,216         |                   ^
2025-09-08T01:45:55,217   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:55,217     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:45:55,217         |                                                  ^
2025-09-08T01:45:58,722   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:45:58,722                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:45:58,722                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:45:58,723                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2025-09-08T01:45:58,723                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:59,
2025-09-08T01:45:58,723                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2025-09-08T01:45:58,723   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:45:58,723      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:45:58,723         |                           ^~~~~~~~~~~~~~
2025-09-08T01:45:58,723   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:45:58,723                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:45:58,723                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:45:58,724                    from ./base//sbml/extension/SBMLDocumentPlugin.h:57:
2025-09-08T01:45:58,724   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:45:58,724     117 |     struct unary_function
2025-09-08T01:45:58,724         |            ^~~~~~~~~~~~~~
2025-09-08T01:45:59,000   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T01:45:59,000   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T01:45:59,000      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:45:59,000         |                   ^
2025-09-08T01:45:59,000   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2025-09-08T01:45:59,000      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2025-09-08T01:45:59,000         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T01:45:59,001   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T01:45:59,001      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:45:59,001         |                                                  ^
2025-09-08T01:45:59,001   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2025-09-08T01:45:59,001      89 |                                           const ExpectedAttributes& expectedAttributes)
2025-09-08T01:45:59,001         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T01:45:59,405   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:59,406      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:45:59,406         |                   ^
2025-09-08T01:45:59,406   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:45:59,406      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:45:59,406         |                                                  ^
2025-09-08T01:46:02,355   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:46:02,355                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:46:02,355                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:46:02,355                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:46:02,355                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:46:02,355                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2025-09-08T01:46:02,356   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:46:02,356      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:46:02,356         |                           ^~~~~~~~~~~~~~
2025-09-08T01:46:02,356   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:46:02,356                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:46:02,356                    from ./base//sbml/SBMLError.h:457,
2025-09-08T01:46:02,356                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T01:46:02,356   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:46:02,356     117 |     struct unary_function
2025-09-08T01:46:02,356         |            ^~~~~~~~~~~~~~
2025-09-08T01:46:02,658   ./base/sbml/extension/SBMLExtension.cpp: In copy constructor ‘SBMLExtension::SBMLExtension(const SBMLExtension&)’:
2025-09-08T01:46:02,658   ./base/sbml/extension/SBMLExtension.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:46:02,658      76 |   if (&orig != NULL)
2025-09-08T01:46:02,658         |             ^
2025-09-08T01:46:02,658   ./base/sbml/extension/SBMLExtension.cpp:71:51: note: ‘orig’ declared here
2025-09-08T01:46:02,659      71 | SBMLExtension::SBMLExtension(const SBMLExtension& orig)
2025-09-08T01:46:02,659         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:02,660   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBMLExtension& SBMLExtension::operator=(const SBMLExtension&)’:
2025-09-08T01:46:02,660   ./base/sbml/extension/SBMLExtension.cpp:113:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:46:02,660     113 |   if (&orig != NULL && &orig != this)
2025-09-08T01:46:02,660         |             ^
2025-09-08T01:46:02,661   ./base/sbml/extension/SBMLExtension.cpp:111:47: note: ‘orig’ declared here
2025-09-08T01:46:02,661     111 | SBMLExtension::operator=(const SBMLExtension& orig)
2025-09-08T01:46:02,661         |                          ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:02,662   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T01:46:02,662   ./base/sbml/extension/SBMLExtension.cpp:254:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T01:46:02,663     254 |   if (&extPoint == NULL) return NULL;
2025-09-08T01:46:02,663         |                 ^
2025-09-08T01:46:02,663   ./base/sbml/extension/SBMLExtension.cpp:252:65: note: ‘extPoint’ declared here
2025-09-08T01:46:02,663     252 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2025-09-08T01:46:02,663         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:46:02,666   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T01:46:02,666   ./base/sbml/extension/SBMLExtension.cpp:325:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T01:46:02,667     325 |   if(&uri == NULL) return false;
2025-09-08T01:46:02,667         |           ^
2025-09-08T01:46:02,667   ./base/sbml/extension/SBMLExtension.cpp:323:47: note: ‘uri’ declared here
2025-09-08T01:46:02,667     323 | SBMLExtension::isSupported(const std::string& uri) const
2025-09-08T01:46:02,667         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:46:03,185   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T01:46:03,185   ./base/sbml/extension/SBMLExtension.cpp:254:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:03,185     254 |   if (&extPoint == NULL) return NULL;
2025-09-08T01:46:03,185         |   ^~
2025-09-08T01:46:03,197   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T01:46:03,197   ./base/sbml/extension/SBMLExtension.cpp:325:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:03,197     325 |   if(&uri == NULL) return false;
2025-09-08T01:46:03,197         |   ^~
2025-09-08T01:46:03,204   ./base/sbml/extension/SBMLExtension.cpp: In copy constructor ‘SBMLExtension::SBMLExtension(const SBMLExtension&)’:
2025-09-08T01:46:03,204   ./base/sbml/extension/SBMLExtension.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:03,204      76 |   if (&orig != NULL)
2025-09-08T01:46:03,204         |   ^~
2025-09-08T01:46:03,205   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBMLExtension& SBMLExtension::operator=(const SBMLExtension&)’:
2025-09-08T01:46:03,205   ./base/sbml/extension/SBMLExtension.cpp:113:13: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:03,205     113 |   if (&orig != NULL && &orig != this)
2025-09-08T01:46:03,205         |             ^
2025-09-08T01:46:09,171   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:46:09,171                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:46:09,171                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:46:09,171                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:46:09,172                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:46:09,172                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T01:46:09,172                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2025-09-08T01:46:09,172   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:46:09,172      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:46:09,172         |                           ^~~~~~~~~~~~~~
2025-09-08T01:46:09,173   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:46:09,173                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:46:09,173                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:46:09,173                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2025-09-08T01:46:09,173   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:46:09,173     117 |     struct unary_function
2025-09-08T01:46:09,173         |            ^~~~~~~~~~~~~~
2025-09-08T01:46:12,818   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:46:12,818                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:46:12,818                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:46:12,818                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:46:12,818                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:46:12,818                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T01:46:12,818                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2025-09-08T01:46:12,818   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:46:12,819      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:46:12,819         |                           ^~~~~~~~~~~~~~
2025-09-08T01:46:12,819   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:46:12,819                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:46:12,819                    from ./base//sbml/SBMLError.h:457,
2025-09-08T01:46:12,819                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T01:46:12,819   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:46:12,819     117 |     struct unary_function
2025-09-08T01:46:12,819         |            ^~~~~~~~~~~~~~
2025-09-08T01:46:13,126   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T01:46:13,126   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:46:13,126     103 |   if (&orig != NULL)
2025-09-08T01:46:13,126         |             ^
2025-09-08T01:46:13,127   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2025-09-08T01:46:13,127     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2025-09-08T01:46:13,127         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:13,214   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T01:46:13,215   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T01:46:13,215     221 |   if(&uri == NULL) return NULL;
2025-09-08T01:46:13,215         |           ^
2025-09-08T01:46:13,215   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2025-09-08T01:46:13,215     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2025-09-08T01:46:13,215         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:46:13,227   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T01:46:13,227   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T01:46:13,228     245 |   if (&extPoint != NULL)
2025-09-08T01:46:13,228         |                 ^
2025-09-08T01:46:13,228   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2025-09-08T01:46:13,228     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2025-09-08T01:46:13,228         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:46:13,231   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T01:46:13,231   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T01:46:13,231     272 |   if (&uri != NULL)
2025-09-08T01:46:13,231         |            ^
2025-09-08T01:46:13,231   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2025-09-08T01:46:13,232     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2025-09-08T01:46:13,232         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:46:13,233   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T01:46:13,233   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T01:46:13,233     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T01:46:13,233         |                ^
2025-09-08T01:46:13,233   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2025-09-08T01:46:13,234     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T01:46:13,234         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:46:13,234   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T01:46:13,234     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T01:46:13,234         |                                ^
2025-09-08T01:46:13,234   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2025-09-08T01:46:13,234     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T01:46:13,234         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:46:13,235   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T01:46:13,235   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T01:46:13,235     347 |   if (&extPoint == NULL) return 0;
2025-09-08T01:46:13,235         |                 ^
2025-09-08T01:46:13,235   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2025-09-08T01:46:13,236     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2025-09-08T01:46:13,236         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:46:13,237   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2025-09-08T01:46:13,237   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T01:46:13,237     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2025-09-08T01:46:13,237         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T01:46:13,237   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T01:46:13,965   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T01:46:13,965   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:13,965     272 |   if (&uri != NULL)
2025-09-08T01:46:13,966         |   ^~
2025-09-08T01:46:13,970   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T01:46:13,970   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:13,970     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T01:46:13,970         |                ^
2025-09-08T01:46:13,971   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:13,971     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T01:46:13,971         |                                ^
2025-09-08T01:46:13,971   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T01:46:13,971   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:13,971     245 |   if (&extPoint != NULL)
2025-09-08T01:46:13,971         |   ^~
2025-09-08T01:46:13,971   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T01:46:13,971   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:13,972     347 |   if (&extPoint == NULL) return 0;
2025-09-08T01:46:13,972         |   ^~
2025-09-08T01:46:13,979   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T01:46:13,979   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:13,979     221 |   if(&uri == NULL) return NULL;
2025-09-08T01:46:13,979         |   ^~
2025-09-08T01:46:13,983   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T01:46:13,983   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:13,983     103 |   if (&orig != NULL)
2025-09-08T01:46:13,983         |   ^~
2025-09-08T01:46:18,404   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T01:46:18,404   ./base/sbml/extension/SBaseExtensionPoint.cpp:116:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T01:46:18,404     116 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T01:46:18,404         |            ^
2025-09-08T01:46:18,404   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:44: note: ‘lhs’ declared here
2025-09-08T01:46:18,404     114 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T01:46:18,405         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:46:18,405   ./base/sbml/extension/SBaseExtensionPoint.cpp:116:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:46:18,405     116 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T01:46:18,405         |                            ^
2025-09-08T01:46:18,405   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:76: note: ‘rhs’ declared here
2025-09-08T01:46:18,405     114 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T01:46:18,405         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:46:18,405   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T01:46:18,406   ./base/sbml/extension/SBaseExtensionPoint.cpp:142:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T01:46:18,406     142 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T01:46:18,406         |            ^
2025-09-08T01:46:18,406   ./base/sbml/extension/SBaseExtensionPoint.cpp:140:43: note: ‘lhs’ declared here
2025-09-08T01:46:18,406     140 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T01:46:18,406         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:46:18,406   ./base/sbml/extension/SBaseExtensionPoint.cpp:142:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:46:18,406     142 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T01:46:18,406         |                            ^
2025-09-08T01:46:18,407   ./base/sbml/extension/SBaseExtensionPoint.cpp:140:75: note: ‘rhs’ declared here
2025-09-08T01:46:18,407     140 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T01:46:18,407         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:46:18,676   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T01:46:18,676   ./base/sbml/extension/SBaseExtensionPoint.cpp:116:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:18,676     116 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T01:46:18,677         |            ^
2025-09-08T01:46:18,677   ./base/sbml/extension/SBaseExtensionPoint.cpp:116:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:18,677     116 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T01:46:18,677         |                            ^
2025-09-08T01:46:18,677   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T01:46:18,677   ./base/sbml/extension/SBaseExtensionPoint.cpp:142:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:18,678     142 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T01:46:18,678         |            ^
2025-09-08T01:46:18,678   ./base/sbml/extension/SBaseExtensionPoint.cpp:142:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:18,678     142 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T01:46:18,678         |                            ^
2025-09-08T01:46:21,802   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:46:21,802                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:46:21,802                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:46:21,803                    from ./base//sbml/extension/SBasePlugin.h:62,
2025-09-08T01:46:21,803                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2025-09-08T01:46:21,803   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:46:21,803      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:46:21,803         |                           ^~~~~~~~~~~~~~
2025-09-08T01:46:21,803   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:46:21,803                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:46:21,803                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:46:21,803                    from ./base//sbml/extension/SBasePlugin.h:60:
2025-09-08T01:46:21,803   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:46:21,804     117 |     struct unary_function
2025-09-08T01:46:21,804         |            ^~~~~~~~~~~~~~
2025-09-08T01:46:22,107   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T01:46:22,107   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T01:46:22,107     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:46:22,107         |                   ^
2025-09-08T01:46:22,108   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2025-09-08T01:46:22,108     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T01:46:22,108         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T01:46:22,108   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T01:46:22,108     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:46:22,108         |                                                  ^
2025-09-08T01:46:22,108   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2025-09-08T01:46:22,108     576 |                              const ExpectedAttributes& expectedAttributes)
2025-09-08T01:46:22,108         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T01:46:22,110   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T01:46:22,110   ./base/sbml/extension/SBasePlugin.cpp:693:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:46:22,110     693 |   if(&element == NULL) return;
2025-09-08T01:46:22,111         |               ^
2025-09-08T01:46:22,111   ./base/sbml/extension/SBasePlugin.cpp:688:51: note: ‘element’ declared here
2025-09-08T01:46:22,111     688 | SBasePlugin::logUnknownElement(const std::string &element,
2025-09-08T01:46:22,111         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:46:22,117   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T01:46:22,118   ./base/sbml/extension/SBasePlugin.cpp:726:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T01:46:22,118     726 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:46:22,118         |                  ^
2025-09-08T01:46:22,118   ./base/sbml/extension/SBasePlugin.cpp:720:53: note: ‘attribute’ declared here
2025-09-08T01:46:22,118     720 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2025-09-08T01:46:22,118         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:46:22,119   ./base/sbml/extension/SBasePlugin.cpp:726:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:46:22,119     726 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:46:22,119         |                                      ^
2025-09-08T01:46:22,119   ./base/sbml/extension/SBasePlugin.cpp:724:53: note: ‘element’ declared here
2025-09-08T01:46:22,119     724 |                                  const std::string& element)
2025-09-08T01:46:22,119         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:46:22,126   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T01:46:22,126   ./base/sbml/extension/SBasePlugin.cpp:772:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T01:46:22,126     772 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:46:22,126         |                  ^
2025-09-08T01:46:22,126   ./base/sbml/extension/SBasePlugin.cpp:765:48: note: ‘attribute’ declared here
2025-09-08T01:46:22,126     765 | SBasePlugin::logEmptyString(const std::string &attribute,
2025-09-08T01:46:22,126         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:46:22,127   ./base/sbml/extension/SBasePlugin.cpp:772:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:46:22,127     772 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:46:22,127         |                                      ^
2025-09-08T01:46:22,127   ./base/sbml/extension/SBasePlugin.cpp:769:56: note: ‘element’ declared here
2025-09-08T01:46:22,127     769 |                                     const std::string& element)
2025-09-08T01:46:22,127         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:46:22,598   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T01:46:22,598   ./base/sbml/extension/SBasePlugin.cpp:693:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:22,598     693 |   if(&element == NULL) return;
2025-09-08T01:46:22,598         |   ^~
2025-09-08T01:46:22,599   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T01:46:22,599   ./base/sbml/extension/SBasePlugin.cpp:726:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:22,599     726 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:46:22,599         |                  ^
2025-09-08T01:46:22,600   ./base/sbml/extension/SBasePlugin.cpp:726:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:22,600     726 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:46:22,600         |                                      ^
2025-09-08T01:46:22,601   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T01:46:22,601   ./base/sbml/extension/SBasePlugin.cpp:772:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:22,601     772 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:46:22,601         |                  ^
2025-09-08T01:46:22,601   ./base/sbml/extension/SBasePlugin.cpp:772:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:22,601     772 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:46:22,601         |                                      ^
2025-09-08T01:46:22,603   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T01:46:22,604   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:22,604     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:46:22,604         |                   ^
2025-09-08T01:46:22,604   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:22,604     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:46:22,604         |                                                  ^
2025-09-08T01:46:27,355   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:46:27,355                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:46:27,355                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:46:27,355                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:46:27,355                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2025-09-08T01:46:27,355   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:46:27,355      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:46:27,355         |                           ^~~~~~~~~~~~~~
2025-09-08T01:46:27,356   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:46:27,356                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:46:27,356                    from ./base//sbml/SBMLError.h:457,
2025-09-08T01:46:27,356                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T01:46:27,356   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:46:27,357     117 |     struct unary_function
2025-09-08T01:46:27,357         |            ^~~~~~~~~~~~~~
2025-09-08T01:46:27,618   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2025-09-08T01:46:27,618   ./base/sbml/extension/SBasePluginCreatorBase.cpp:147:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T01:46:27,619     147 |   if (&uri == NULL) return false;
2025-09-08T01:46:27,619         |            ^
2025-09-08T01:46:27,619   ./base/sbml/extension/SBasePluginCreatorBase.cpp:145:56: note: ‘uri’ declared here
2025-09-08T01:46:27,619     145 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2025-09-08T01:46:27,619         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:46:28,032   ./base/sbml/extension/SBasePluginCreatorBase.cpp:147:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:28,033     147 |   if (&uri == NULL) return false;
2025-09-08T01:46:28,033         |   ^~
2025-09-08T01:46:31,473   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:46:31,474                    from ./base//sbml/Model.h:446,
2025-09-08T01:46:31,474                    from ./base/sbml/math/ASTNode.cpp:44:
2025-09-08T01:46:31,474   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:46:31,474      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:46:31,474         |                           ^~~~~~~~~~~~~~
2025-09-08T01:46:31,475   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:46:31,475                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:46:31,475                    from ./base//sbml/math/ASTNode.h:164,
2025-09-08T01:46:31,475                    from ./base/sbml/math/ASTNode.cpp:41:
2025-09-08T01:46:31,475   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:46:31,475     117 |     struct unary_function
2025-09-08T01:46:31,475         |            ^~~~~~~~~~~~~~
2025-09-08T01:46:40,610   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:46:40,611                    from ./base//sbml/Model.h:446,
2025-09-08T01:46:40,611                    from L3Parser.ypp:83:
2025-09-08T01:46:40,611   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:46:40,611      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:46:40,611         |                           ^~~~~~~~~~~~~~
2025-09-08T01:46:40,612   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:46:40,612                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:46:40,612                    from ./base//sbml/math/ASTNode.h:164,
2025-09-08T01:46:40,612                    from ./base//sbml/math/L3Parser.h:37,
2025-09-08T01:46:40,612                    from L3Parser.ypp:82:
2025-09-08T01:46:40,612   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:46:40,612     117 |     struct unary_function
2025-09-08T01:46:40,613         |            ^~~~~~~~~~~~~~
2025-09-08T01:46:49,878   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:46:49,878                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:46:49,878                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:46:49,878                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:46:49,878                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:46:49,878                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T01:46:49,878                    from ./base/sbml/math/L3ParserSettings.cpp:35:
2025-09-08T01:46:49,878   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:46:49,878      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:46:49,878         |                           ^~~~~~~~~~~~~~
2025-09-08T01:46:49,879   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T01:46:49,879                    from /usr/include/c++/14/vector:68,
2025-09-08T01:46:49,879                    from ./base//sbml/math/L3ParserSettings.h:316,
2025-09-08T01:46:49,880                    from ./base/sbml/math/L3ParserSettings.cpp:34:
2025-09-08T01:46:49,880   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:46:49,880     117 |     struct unary_function
2025-09-08T01:46:49,880         |            ^~~~~~~~~~~~~~
2025-09-08T01:46:53,125   ./base/sbml/math/MathML.cpp: In function ‘void logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T01:46:53,126   ./base/sbml/math/MathML.cpp:275:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:46:53,126     275 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,126         |                ^
2025-09-08T01:46:53,126   ./base/sbml/math/MathML.cpp:272:51: note: ‘element’ declared here
2025-09-08T01:46:53,126     272 | logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T01:46:53,126         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:46:53,126   ./base/sbml/math/MathML.cpp:275:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,127     275 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,127         |                                   ^
2025-09-08T01:46:53,127   ./base/sbml/math/MathML.cpp:272:27: note: ‘stream’ declared here
2025-09-08T01:46:53,127     272 | logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T01:46:53,127         |           ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,128   ./base/sbml/math/MathML.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T01:46:53,128   ./base/sbml/math/MathML.cpp:310:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T01:46:53,129     310 |   if (&s == NULL) return s;
2025-09-08T01:46:53,129         |          ^
2025-09-08T01:46:53,129   ./base/sbml/math/MathML.cpp:308:21: note: ‘s’ declared here
2025-09-08T01:46:53,129     308 | trim (const string& s)
2025-09-08T01:46:53,129         |       ~~~~~~~~~~~~~~^
2025-09-08T01:46:53,132   ./base/sbml/math/MathML.cpp: In function ‘void checkFunctionArgs(ASTNode&)’:
2025-09-08T01:46:53,132   ./base/sbml/math/MathML.cpp:337:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,132     337 |   if (&node == NULL) return;
2025-09-08T01:46:53,132         |             ^
2025-09-08T01:46:53,132   ./base/sbml/math/MathML.cpp:335:29: note: ‘node’ declared here
2025-09-08T01:46:53,133     335 | checkFunctionArgs (ASTNode& node)
2025-09-08T01:46:53,133         |                    ~~~~~~~~~^~~~
2025-09-08T01:46:53,135   ./base/sbml/math/MathML.cpp: In function ‘void reduceBinary(ASTNode&)’:
2025-09-08T01:46:53,135   ./base/sbml/math/MathML.cpp:369:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,135     369 |   if (&node == NULL) return;
2025-09-08T01:46:53,135         |             ^
2025-09-08T01:46:53,135   ./base/sbml/math/MathML.cpp:367:24: note: ‘node’ declared here
2025-09-08T01:46:53,135     367 | reduceBinary (ASTNode& node)
2025-09-08T01:46:53,136         |               ~~~~~~~~~^~~~
2025-09-08T01:46:53,136   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T01:46:53,137   ./base/sbml/math/MathML.cpp:388:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,137     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,137         |             ^
2025-09-08T01:46:53,137   ./base/sbml/math/MathML.cpp:386:21: note: ‘node’ declared here
2025-09-08T01:46:53,137     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,137         |            ~~~~~~~~~^~~~
2025-09-08T01:46:53,138   ./base/sbml/math/MathML.cpp:388:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:46:53,138     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,138         |                                 ^
2025-09-08T01:46:53,138   ./base/sbml/math/MathML.cpp:386:43: note: ‘element’ declared here
2025-09-08T01:46:53,138     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,138         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:46:53,138   ./base/sbml/math/MathML.cpp:388:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,139     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,139         |                                                    ^
2025-09-08T01:46:53,139   ./base/sbml/math/MathML.cpp:386:68: note: ‘stream’ declared here
2025-09-08T01:46:53,139     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,139         |                                                    ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,145   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCN(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T01:46:53,145   ./base/sbml/math/MathML.cpp:436:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,145     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,145         |             ^
2025-09-08T01:46:53,146   ./base/sbml/math/MathML.cpp:434:21: note: ‘node’ declared here
2025-09-08T01:46:53,146     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,146         |            ~~~~~~~~~^~~~
2025-09-08T01:46:53,146   ./base/sbml/math/MathML.cpp:436:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:46:53,146     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,146         |                                 ^
2025-09-08T01:46:53,147   ./base/sbml/math/MathML.cpp:434:43: note: ‘element’ declared here
2025-09-08T01:46:53,147     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,147         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:46:53,147   ./base/sbml/math/MathML.cpp:436:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,147     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,147         |                                                    ^
2025-09-08T01:46:53,147   ./base/sbml/math/MathML.cpp:434:68: note: ‘stream’ declared here
2025-09-08T01:46:53,148     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,148         |                                                    ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,159   ./base/sbml/math/MathML.cpp: In function ‘void setTypeOther(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T01:46:53,159   ./base/sbml/math/MathML.cpp:565:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,159     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,159         |             ^
2025-09-08T01:46:53,160   ./base/sbml/math/MathML.cpp:563:24: note: ‘node’ declared here
2025-09-08T01:46:53,160     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,160         |               ~~~~~~~~~^~~~
2025-09-08T01:46:53,160   ./base/sbml/math/MathML.cpp:565:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:46:53,160     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,160         |                                 ^
2025-09-08T01:46:53,161   ./base/sbml/math/MathML.cpp:563:46: note: ‘element’ declared here
2025-09-08T01:46:53,161     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,161         |                              ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:46:53,161   ./base/sbml/math/MathML.cpp:565:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,161     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,161         |                                                    ^
2025-09-08T01:46:53,162   ./base/sbml/math/MathML.cpp:563:71: note: ‘stream’ declared here
2025-09-08T01:46:53,162     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,162         |                                                       ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,163   ./base/sbml/math/MathML.cpp: In function ‘void setType(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T01:46:53,163   ./base/sbml/math/MathML.cpp:585:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,163     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,163         |             ^
2025-09-08T01:46:53,163   ./base/sbml/math/MathML.cpp:583:19: note: ‘node’ declared here
2025-09-08T01:46:53,164     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,164         |          ~~~~~~~~~^~~~
2025-09-08T01:46:53,164   ./base/sbml/math/MathML.cpp:585:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:46:53,164     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,164         |                                 ^
2025-09-08T01:46:53,164   ./base/sbml/math/MathML.cpp:583:41: note: ‘element’ declared here
2025-09-08T01:46:53,164     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,165         |                         ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:46:53,165   ./base/sbml/math/MathML.cpp:585:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,165     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,165         |                                                    ^
2025-09-08T01:46:53,165   ./base/sbml/math/MathML.cpp:583:66: note: ‘stream’ declared here
2025-09-08T01:46:53,165     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T01:46:53,165         |                                                  ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,169   ./base/sbml/math/MathML.cpp: In function ‘bool isMathMLNodeTag(const std::string&)’:
2025-09-08T01:46:53,169   ./base/sbml/math/MathML.cpp:621:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:46:53,169     621 |   if (&name == NULL) return false;
2025-09-08T01:46:53,169         |             ^
2025-09-08T01:46:53,169   ./base/sbml/math/MathML.cpp:619:31: note: ‘name’ declared here
2025-09-08T01:46:53,169     619 | isMathMLNodeTag(const string& name)
2025-09-08T01:46:53,169         |                 ~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,174   ./base/sbml/math/MathML.cpp: In function ‘void readMathML(ASTNode&, XMLInputStream&, std::string, bool)’:
2025-09-08T01:46:53,174   ./base/sbml/math/MathML.cpp:650:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,174     650 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,175         |             ^
2025-09-08T01:46:53,175   ./base/sbml/math/MathML.cpp:647:22: note: ‘node’ declared here
2025-09-08T01:46:53,175     647 | readMathML (ASTNode& node, XMLInputStream& stream, std::string reqd_prefix,
2025-09-08T01:46:53,175         |             ~~~~~~~~~^~~~
2025-09-08T01:46:53,175   ./base/sbml/math/MathML.cpp:650:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,175     650 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,175         |                                ^
2025-09-08T01:46:53,176   ./base/sbml/math/MathML.cpp:647:44: note: ‘stream’ declared here
2025-09-08T01:46:53,176     647 | readMathML (ASTNode& node, XMLInputStream& stream, std::string reqd_prefix,
2025-09-08T01:46:53,176         |                            ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,210   ./base/sbml/math/MathML.cpp: In function ‘void writeCI(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,210   ./base/sbml/math/MathML.cpp:1021:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,211    1021 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,211         |             ^
2025-09-08T01:46:53,211   ./base/sbml/math/MathML.cpp:1019:25: note: ‘node’ declared here
2025-09-08T01:46:53,211    1019 | writeCI (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,211         |          ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,211   ./base/sbml/math/MathML.cpp:1021:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,211    1021 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,212         |                                ^
2025-09-08T01:46:53,212   ./base/sbml/math/MathML.cpp:1019:48: note: ‘stream’ declared here
2025-09-08T01:46:53,212    1019 | writeCI (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,212         |                               ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,217   ./base/sbml/math/MathML.cpp: In function ‘void writeCN(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,217   ./base/sbml/math/MathML.cpp:1060:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,217    1060 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,217         |             ^
2025-09-08T01:46:53,217   ./base/sbml/math/MathML.cpp:1058:25: note: ‘node’ declared here
2025-09-08T01:46:53,218    1058 | writeCN (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns=NULL)
2025-09-08T01:46:53,218         |          ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,218   ./base/sbml/math/MathML.cpp:1060:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,218    1060 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,218         |                                ^
2025-09-08T01:46:53,218   ./base/sbml/math/MathML.cpp:1058:48: note: ‘stream’ declared here
2025-09-08T01:46:53,218    1058 | writeCN (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns=NULL)
2025-09-08T01:46:53,219         |                               ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,229   ./base/sbml/math/MathML.cpp: In function ‘void writeConstant(const ASTNode&, XMLOutputStream&)’:
2025-09-08T01:46:53,229   ./base/sbml/math/MathML.cpp:1136:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,229    1136 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,229         |             ^
2025-09-08T01:46:53,230   ./base/sbml/math/MathML.cpp:1134:31: note: ‘node’ declared here
2025-09-08T01:46:53,230    1134 | writeConstant (const ASTNode& node, XMLOutputStream& stream)
2025-09-08T01:46:53,230         |                ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,230   ./base/sbml/math/MathML.cpp:1136:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,230    1136 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,230         |                                ^
2025-09-08T01:46:53,230   ./base/sbml/math/MathML.cpp:1134:54: note: ‘stream’ declared here
2025-09-08T01:46:53,231    1134 | writeConstant (const ASTNode& node, XMLOutputStream& stream)
2025-09-08T01:46:53,231         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,232   ./base/sbml/math/MathML.cpp: In function ‘void writeCSymbol(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,233   ./base/sbml/math/MathML.cpp:1162:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,233    1162 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,233         |             ^
2025-09-08T01:46:53,233   ./base/sbml/math/MathML.cpp:1160:30: note: ‘node’ declared here
2025-09-08T01:46:53,233    1160 | writeCSymbol (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,233         |               ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,234   ./base/sbml/math/MathML.cpp:1162:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,234    1162 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,234         |                                ^
2025-09-08T01:46:53,234   ./base/sbml/math/MathML.cpp:1160:53: note: ‘stream’ declared here
2025-09-08T01:46:53,234    1160 | writeCSymbol (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,234         |                                    ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,239   ./base/sbml/math/MathML.cpp: In function ‘void writeDouble(const double&, XMLOutputStream&)’:
2025-09-08T01:46:53,239   ./base/sbml/math/MathML.cpp:1194:14: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T01:46:53,239    1194 |   if (&value == NULL || &stream == NULL) return;
2025-09-08T01:46:53,239         |              ^
2025-09-08T01:46:53,240   ./base/sbml/math/MathML.cpp:1192:28: note: ‘value’ declared here
2025-09-08T01:46:53,240    1192 | writeDouble (const double& value, XMLOutputStream& stream)
2025-09-08T01:46:53,240         |              ~~~~~~~~~~~~~~^~~~~
2025-09-08T01:46:53,240   ./base/sbml/math/MathML.cpp:1194:33: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,240    1194 |   if (&value == NULL || &stream == NULL) return;
2025-09-08T01:46:53,240         |                                 ^
2025-09-08T01:46:53,241   ./base/sbml/math/MathML.cpp:1192:52: note: ‘stream’ declared here
2025-09-08T01:46:53,241    1192 | writeDouble (const double& value, XMLOutputStream& stream)
2025-09-08T01:46:53,241         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,245   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const double&, long int, XMLOutputStream&)’:
2025-09-08T01:46:53,245   ./base/sbml/math/MathML.cpp:1232:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2025-09-08T01:46:53,245    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2025-09-08T01:46:53,245         |                 ^
2025-09-08T01:46:53,245   ./base/sbml/math/MathML.cpp:1228:36: note: ‘mantissa’ declared here
2025-09-08T01:46:53,245    1228 | writeENotation (  const double&    mantissa
2025-09-08T01:46:53,245         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:46:53,246   ./base/sbml/math/MathML.cpp:1232:36: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,246    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2025-09-08T01:46:53,246         |                                    ^
2025-09-08T01:46:53,246   ./base/sbml/math/MathML.cpp:1230:36: note: ‘stream’ declared here
2025-09-08T01:46:53,246    1230 |                 , XMLOutputStream& stream )
2025-09-08T01:46:53,246         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,249   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const std::string&, const std::string&, XMLOutputStream&)’:
2025-09-08T01:46:53,249   ./base/sbml/math/MathML.cpp:1267:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2025-09-08T01:46:53,249    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T01:46:53,250         |                 ^
2025-09-08T01:46:53,250   ./base/sbml/math/MathML.cpp:1263:36: note: ‘mantissa’ declared here
2025-09-08T01:46:53,250    1263 | writeENotation (  const string&    mantissa
2025-09-08T01:46:53,250         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:46:53,250   ./base/sbml/math/MathML.cpp:1267:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2025-09-08T01:46:53,250    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T01:46:53,250         |                                      ^
2025-09-08T01:46:53,250   ./base/sbml/math/MathML.cpp:1264:36: note: ‘exponent’ declared here
2025-09-08T01:46:53,251    1264 |                 , const string&    exponent
2025-09-08T01:46:53,251         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:46:53,251   ./base/sbml/math/MathML.cpp:1267:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,251    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T01:46:53,251         |                                                         ^
2025-09-08T01:46:53,251   ./base/sbml/math/MathML.cpp:1265:36: note: ‘stream’ declared here
2025-09-08T01:46:53,251    1265 |                 , XMLOutputStream& stream )
2025-09-08T01:46:53,251         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,254   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionLog(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,254   ./base/sbml/math/MathML.cpp:1286:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,254    1286 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,254         |             ^
2025-09-08T01:46:53,254   ./base/sbml/math/MathML.cpp:1284:34: note: ‘node’ declared here
2025-09-08T01:46:53,255    1284 | writeFunctionLog (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,255         |                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,255   ./base/sbml/math/MathML.cpp:1286:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,255    1286 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,255         |                                ^
2025-09-08T01:46:53,255   ./base/sbml/math/MathML.cpp:1284:57: note: ‘stream’ declared here
2025-09-08T01:46:53,255    1284 | writeFunctionLog (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,256         |                                        ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,257   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionRoot(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,257   ./base/sbml/math/MathML.cpp:1309:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,258    1309 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,258         |             ^
2025-09-08T01:46:53,258   ./base/sbml/math/MathML.cpp:1307:35: note: ‘node’ declared here
2025-09-08T01:46:53,258    1307 | writeFunctionRoot (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,258         |                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,258   ./base/sbml/math/MathML.cpp:1309:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,258    1309 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,259         |                                ^
2025-09-08T01:46:53,259   ./base/sbml/math/MathML.cpp:1307:58: note: ‘stream’ declared here
2025-09-08T01:46:53,259    1307 | writeFunctionRoot (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,259         |                                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,261   ./base/sbml/math/MathML.cpp: In function ‘void writeFunction(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,261   ./base/sbml/math/MathML.cpp:1336:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,261    1336 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,261         |             ^
2025-09-08T01:46:53,261   ./base/sbml/math/MathML.cpp:1334:31: note: ‘node’ declared here
2025-09-08T01:46:53,262    1334 | writeFunction (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,262         |                ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,262   ./base/sbml/math/MathML.cpp:1336:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,262    1336 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,262         |                                ^
2025-09-08T01:46:53,262   ./base/sbml/math/MathML.cpp:1334:54: note: ‘stream’ declared here
2025-09-08T01:46:53,262    1334 | writeFunction (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,263         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,266   ./base/sbml/math/MathML.cpp: In function ‘void writeLambda(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,266   ./base/sbml/math/MathML.cpp:1395:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,266    1395 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,267         |             ^
2025-09-08T01:46:53,267   ./base/sbml/math/MathML.cpp:1393:29: note: ‘node’ declared here
2025-09-08T01:46:53,267    1393 | writeLambda (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,267         |              ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,267   ./base/sbml/math/MathML.cpp:1395:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,267    1395 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,267         |                                ^
2025-09-08T01:46:53,268   ./base/sbml/math/MathML.cpp:1393:52: note: ‘stream’ declared here
2025-09-08T01:46:53,268    1393 | writeLambda (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,268         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,270   ./base/sbml/math/MathML.cpp: In function ‘void writeOperatorArgs(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,271   ./base/sbml/math/MathML.cpp:1435:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,271    1435 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,271         |             ^
2025-09-08T01:46:53,271   ./base/sbml/math/MathML.cpp:1433:35: note: ‘node’ declared here
2025-09-08T01:46:53,271    1433 | writeOperatorArgs (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,271         |                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,272   ./base/sbml/math/MathML.cpp:1435:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,272    1435 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,272         |                                ^
2025-09-08T01:46:53,272   ./base/sbml/math/MathML.cpp:1433:58: note: ‘stream’ declared here
2025-09-08T01:46:53,272    1433 | writeOperatorArgs (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,272         |                                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,275   ./base/sbml/math/MathML.cpp: In function ‘void writeOperator(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,275   ./base/sbml/math/MathML.cpp:1500:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,275    1500 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,275         |             ^
2025-09-08T01:46:53,275   ./base/sbml/math/MathML.cpp:1498:31: note: ‘node’ declared here
2025-09-08T01:46:53,276    1498 | writeOperator (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,276         |                ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,276   ./base/sbml/math/MathML.cpp:1500:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,276    1500 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,276         |                                ^
2025-09-08T01:46:53,276   ./base/sbml/math/MathML.cpp:1498:54: note: ‘stream’ declared here
2025-09-08T01:46:53,276    1498 | writeOperator (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,277         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,279   ./base/sbml/math/MathML.cpp: In function ‘void writePiecewise(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,279   ./base/sbml/math/MathML.cpp:1533:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,279    1533 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,280         |             ^
2025-09-08T01:46:53,280   ./base/sbml/math/MathML.cpp:1531:32: note: ‘node’ declared here
2025-09-08T01:46:53,280    1531 | writePiecewise (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,280         |                 ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,280   ./base/sbml/math/MathML.cpp:1533:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,280    1533 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,280         |                                ^
2025-09-08T01:46:53,281   ./base/sbml/math/MathML.cpp:1531:55: note: ‘stream’ declared here
2025-09-08T01:46:53,281    1531 | writePiecewise (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,281         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,284   ./base/sbml/math/MathML.cpp: In function ‘void writeSemantics(const ASTNode&, XMLOutputStream&, bool&, SBMLNamespaces*)’:
2025-09-08T01:46:53,284   ./base/sbml/math/MathML.cpp:1576:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,284    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T01:46:53,284         |             ^
2025-09-08T01:46:53,285   ./base/sbml/math/MathML.cpp:1574:31: note: ‘node’ declared here
2025-09-08T01:46:53,285    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,285         |                ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,285   ./base/sbml/math/MathML.cpp:1576:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,285    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T01:46:53,285         |                                ^
2025-09-08T01:46:53,285   ./base/sbml/math/MathML.cpp:1574:54: note: ‘stream’ declared here
2025-09-08T01:46:53,286    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,286         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,286   ./base/sbml/math/MathML.cpp:1576:56: warning: the compiler can assume that the address of ‘inSemantics’ will never be NULL [-Waddress]
2025-09-08T01:46:53,286    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T01:46:53,286         |                                                        ^
2025-09-08T01:46:53,286   ./base/sbml/math/MathML.cpp:1574:68: note: ‘inSemantics’ declared here
2025-09-08T01:46:53,286    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,287         |                                                              ~~~~~~^~~~~~~~~~~
2025-09-08T01:46:53,289   ./base/sbml/math/MathML.cpp: In function ‘void writeNode(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,289   ./base/sbml/math/MathML.cpp:1603:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:46:53,289    1603 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,289         |             ^
2025-09-08T01:46:53,290   ./base/sbml/math/MathML.cpp:1601:27: note: ‘node’ declared here
2025-09-08T01:46:53,290    1601 | writeNode (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,290         |            ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:46:53,290   ./base/sbml/math/MathML.cpp:1603:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,290    1603 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,290         |                                ^
2025-09-08T01:46:53,291   ./base/sbml/math/MathML.cpp:1601:50: note: ‘stream’ declared here
2025-09-08T01:46:53,291    1601 | writeNode (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,291         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,292   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’:
2025-09-08T01:46:53,292   ./base/sbml/math/MathML.cpp:1629:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,293    1629 |   if (&stream == NULL) return NULL;
2025-09-08T01:46:53,293         |               ^
2025-09-08T01:46:53,293   ./base/sbml/math/MathML.cpp:1627:29: note: ‘stream’ declared here
2025-09-08T01:46:53,293    1627 | readMathML (XMLInputStream& stream, std::string reqd_prefix, bool inRead)
2025-09-08T01:46:53,293         |             ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,300   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,300   ./base/sbml/math/MathML.cpp:1723:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T01:46:53,301    1723 |   if (node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,301         |                               ^
2025-09-08T01:46:53,301   ./base/sbml/math/MathML.cpp:1721:52: note: ‘stream’ declared here
2025-09-08T01:46:53,301    1721 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T01:46:53,301         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:46:53,728   ./base/sbml/math/MathML.cpp: In function ‘void logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T01:46:53,728   ./base/sbml/math/MathML.cpp:275:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,728     275 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,728         |                                   ^
2025-09-08T01:46:53,728   ./base/sbml/math/MathML.cpp:275:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,728     275 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,728         |                ^
2025-09-08T01:46:53,729   ./base/sbml/math/MathML.cpp: In function ‘void setTypeOther(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T01:46:53,729   ./base/sbml/math/MathML.cpp:565:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,729     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,729         |             ^
2025-09-08T01:46:53,729   ./base/sbml/math/MathML.cpp:565:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,730     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,730         |                                 ^
2025-09-08T01:46:53,730   ./base/sbml/math/MathML.cpp:565:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,730     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,730         |                                         ^
2025-09-08T01:46:53,731   ./base/sbml/math/MathML.cpp: In function ‘void reduceBinary(ASTNode&)’:
2025-09-08T01:46:53,731   ./base/sbml/math/MathML.cpp:369:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,731     369 |   if (&node == NULL) return;
2025-09-08T01:46:53,731         |   ^~
2025-09-08T01:46:53,732   ./base/sbml/math/MathML.cpp: In function ‘void checkFunctionArgs(ASTNode&)’:
2025-09-08T01:46:53,732   ./base/sbml/math/MathML.cpp:337:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,732     337 |   if (&node == NULL) return;
2025-09-08T01:46:53,732         |   ^~
2025-09-08T01:46:53,735   ./base/sbml/math/MathML.cpp: In function ‘bool isMathMLNodeTag(const std::string&)’:
2025-09-08T01:46:53,735   ./base/sbml/math/MathML.cpp:621:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,735     621 |   if (&name == NULL) return false;
2025-09-08T01:46:53,735         |   ^~
2025-09-08T01:46:53,740   ./base/sbml/math/MathML.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T01:46:53,740   ./base/sbml/math/MathML.cpp:310:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,740     310 |   if (&s == NULL) return s;
2025-09-08T01:46:53,740         |   ^~
2025-09-08T01:46:53,743   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const std::string&, const std::string&, XMLOutputStream&)’:
2025-09-08T01:46:53,743   ./base/sbml/math/MathML.cpp:1267:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,743    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T01:46:53,743         |                 ^
2025-09-08T01:46:53,743   ./base/sbml/math/MathML.cpp:1267:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,744    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T01:46:53,744         |                                      ^
2025-09-08T01:46:53,744   ./base/sbml/math/MathML.cpp:1267:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,744    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T01:46:53,744         |                                              ^
2025-09-08T01:46:53,745   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const double&, long int, XMLOutputStream&)’:
2025-09-08T01:46:53,745   ./base/sbml/math/MathML.cpp:1232:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,745    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2025-09-08T01:46:53,745         |                 ^
2025-09-08T01:46:53,745   ./base/sbml/math/MathML.cpp:1232:36: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,746    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2025-09-08T01:46:53,746         |                                    ^
2025-09-08T01:46:53,746   ./base/sbml/math/MathML.cpp: In function ‘void writeDouble(const double&, XMLOutputStream&)’:
2025-09-08T01:46:53,746   ./base/sbml/math/MathML.cpp:1194:14: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,747    1194 |   if (&value == NULL || &stream == NULL) return;
2025-09-08T01:46:53,747         |              ^
2025-09-08T01:46:53,747   ./base/sbml/math/MathML.cpp:1194:33: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,747    1194 |   if (&value == NULL || &stream == NULL) return;
2025-09-08T01:46:53,747         |                                 ^
2025-09-08T01:46:53,749   ./base/sbml/math/MathML.cpp: In function ‘void writeCN(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,749   ./base/sbml/math/MathML.cpp:1060:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,749    1060 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,749         |             ^
2025-09-08T01:46:53,750   ./base/sbml/math/MathML.cpp:1060:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,750    1060 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,750         |                                ^
2025-09-08T01:46:53,751   ./base/sbml/math/MathML.cpp: In function ‘void writeCSymbol(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,752   ./base/sbml/math/MathML.cpp:1162:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,752    1162 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,752         |             ^
2025-09-08T01:46:53,752   ./base/sbml/math/MathML.cpp:1162:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,752    1162 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,752         |                                ^
2025-09-08T01:46:53,753   ./base/sbml/math/MathML.cpp: In function ‘void writeCI(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,753   ./base/sbml/math/MathML.cpp:1021:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,754    1021 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,754         |             ^
2025-09-08T01:46:53,754   ./base/sbml/math/MathML.cpp:1021:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,754    1021 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,754         |                                ^
2025-09-08T01:46:53,755   ./base/sbml/math/MathML.cpp: In function ‘void writeConstant(const ASTNode&, XMLOutputStream&)’:
2025-09-08T01:46:53,755   ./base/sbml/math/MathML.cpp:1136:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,755    1136 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,755         |             ^
2025-09-08T01:46:53,755   ./base/sbml/math/MathML.cpp:1136:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,755    1136 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,756         |                                ^
2025-09-08T01:46:53,756   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionRoot(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,756   ./base/sbml/math/MathML.cpp:1309:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,757    1309 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,757         |             ^
2025-09-08T01:46:53,757   ./base/sbml/math/MathML.cpp:1309:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,757    1309 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,757         |                                ^
2025-09-08T01:46:53,758   ./base/sbml/math/MathML.cpp: In function ‘void writeFunction(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,758   ./base/sbml/math/MathML.cpp:1336:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,758    1336 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,758         |             ^
2025-09-08T01:46:53,758   ./base/sbml/math/MathML.cpp:1336:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,758    1336 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,759         |                                ^
2025-09-08T01:46:53,759   ./base/sbml/math/MathML.cpp: In function ‘void writeNode(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,759   ./base/sbml/math/MathML.cpp:1603:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,760    1603 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,760         |             ^
2025-09-08T01:46:53,760   ./base/sbml/math/MathML.cpp:1603:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,760    1603 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,760         |                                ^
2025-09-08T01:46:53,761   ./base/sbml/math/MathML.cpp: In function ‘void writeSemantics(const ASTNode&, XMLOutputStream&, bool&, SBMLNamespaces*)’:
2025-09-08T01:46:53,761   ./base/sbml/math/MathML.cpp:1576:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,761    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T01:46:53,761         |             ^
2025-09-08T01:46:53,761   ./base/sbml/math/MathML.cpp:1576:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,761    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T01:46:53,761         |                                ^
2025-09-08T01:46:53,761   ./base/sbml/math/MathML.cpp:1576:40: warning: ‘nonnull’ argument ‘inSemantics’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,761    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T01:46:53,762         |                                        ^
2025-09-08T01:46:53,762   ./base/sbml/math/MathML.cpp: In function ‘void writeOperatorArgs(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,762   ./base/sbml/math/MathML.cpp:1435:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,762    1435 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,762         |             ^
2025-09-08T01:46:53,762   ./base/sbml/math/MathML.cpp:1435:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,762    1435 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,762         |                                ^
2025-09-08T01:46:53,762   ./base/sbml/math/MathML.cpp: In function ‘void writeOperator(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,762   ./base/sbml/math/MathML.cpp:1500:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,763    1500 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,763         |             ^
2025-09-08T01:46:53,763   ./base/sbml/math/MathML.cpp:1500:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,763    1500 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,763         |                                ^
2025-09-08T01:46:53,763   ./base/sbml/math/MathML.cpp: In function ‘void writeLambda(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,763   ./base/sbml/math/MathML.cpp:1395:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,763    1395 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,763         |             ^
2025-09-08T01:46:53,763   ./base/sbml/math/MathML.cpp:1395:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,763    1395 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,764         |                                ^
2025-09-08T01:46:53,764   ./base/sbml/math/MathML.cpp: In function ‘void writePiecewise(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,764   ./base/sbml/math/MathML.cpp:1533:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,764    1533 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,764         |             ^
2025-09-08T01:46:53,764   ./base/sbml/math/MathML.cpp:1533:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,764    1533 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,764         |                                ^
2025-09-08T01:46:53,764   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionLog(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,765   ./base/sbml/math/MathML.cpp:1286:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,765    1286 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,765         |             ^
2025-09-08T01:46:53,765   ./base/sbml/math/MathML.cpp:1286:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,765    1286 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,765         |                                ^
2025-09-08T01:46:53,765   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T01:46:53,765   ./base/sbml/math/MathML.cpp:1723:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,765    1723 |   if (node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,765         |                               ^
2025-09-08T01:46:53,768   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCN(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T01:46:53,768   ./base/sbml/math/MathML.cpp:436:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,768     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,768         |             ^
2025-09-08T01:46:53,768   ./base/sbml/math/MathML.cpp:436:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,769     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,769         |                                 ^
2025-09-08T01:46:53,769   ./base/sbml/math/MathML.cpp:436:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,769     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,769         |                                         ^
2025-09-08T01:46:53,769   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T01:46:53,770   ./base/sbml/math/MathML.cpp:388:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,770     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,770         |             ^
2025-09-08T01:46:53,770   ./base/sbml/math/MathML.cpp:388:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,770     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,770         |                                 ^
2025-09-08T01:46:53,770   ./base/sbml/math/MathML.cpp:388:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,770     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,770         |                                         ^
2025-09-08T01:46:53,771   ./base/sbml/math/MathML.cpp: In function ‘void setType(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T01:46:53,771   ./base/sbml/math/MathML.cpp:585:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,771     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,771         |             ^
2025-09-08T01:46:53,771   ./base/sbml/math/MathML.cpp:585:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,771     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,771         |                                 ^
2025-09-08T01:46:53,771   ./base/sbml/math/MathML.cpp:585:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,771     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T01:46:53,771         |                                         ^
2025-09-08T01:46:53,775   ./base/sbml/math/MathML.cpp: In function ‘void readMathML(ASTNode&, XMLInputStream&, std::string, bool)’:
2025-09-08T01:46:53,775   ./base/sbml/math/MathML.cpp:650:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,775     650 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,775         |             ^
2025-09-08T01:46:53,776   ./base/sbml/math/MathML.cpp:650:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,776     650 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T01:46:53,776         |                                ^
2025-09-08T01:46:53,778   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’:
2025-09-08T01:46:53,778   ./base/sbml/math/MathML.cpp:1629:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:46:53,778    1629 |   if (&stream == NULL) return NULL;
2025-09-08T01:46:53,778         |   ^~
2025-09-08T01:47:04,296   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:47:04,296                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:47:04,297                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:47:04,297                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:47:04,297                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:47:04,297                    from ./base//sbml/extension/SBMLExtensionRegister.h:55,
2025-09-08T01:47:04,297                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2025-09-08T01:47:04,297   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:47:04,297      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:47:04,297         |                           ^~~~~~~~~~~~~~
2025-09-08T01:47:04,297   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:47:04,298                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:47:04,298                    from ./base//sbml/SBMLError.h:457,
2025-09-08T01:47:04,298                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T01:47:04,298   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:47:04,298     117 |     struct unary_function
2025-09-08T01:47:04,298         |            ^~~~~~~~~~~~~~
2025-09-08T01:47:09,458   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:47:09,458                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:47:09,458                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:47:09,459                    from ./base//sbml/extension/SBasePlugin.h:62,
2025-09-08T01:47:09,459                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2025-09-08T01:47:09,459                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2025-09-08T01:47:09,459   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:47:09,459      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:47:09,459         |                           ^~~~~~~~~~~~~~
2025-09-08T01:47:09,459   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:47:09,459                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:47:09,459                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:47:09,460                    from /usr/include/c++/14/ios:44,
2025-09-08T01:47:09,460                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:47:09,460                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2025-09-08T01:47:09,460   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:47:09,460     117 |     struct unary_function
2025-09-08T01:47:09,460         |            ^~~~~~~~~~~~~~
2025-09-08T01:47:21,427   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:47:21,427                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:47:21,427                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:47:21,428                    from ./base//sbml/extension/SBasePlugin.h:62,
2025-09-08T01:47:21,428                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:67,
2025-09-08T01:47:21,428                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2025-09-08T01:47:21,428   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:47:21,428      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:47:21,428         |                           ^~~~~~~~~~~~~~
2025-09-08T01:47:21,428   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:47:21,428                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:47:21,428                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:47:21,429                    from /usr/include/c++/14/ios:44,
2025-09-08T01:47:21,429                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:47:21,429                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2025-09-08T01:47:21,429   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:47:21,429     117 |     struct unary_function
2025-09-08T01:47:21,429         |            ^~~~~~~~~~~~~~
2025-09-08T01:47:28,692   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:47:28,693                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:47:28,693                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:47:28,693                    from ./base//sbml/extension/SBasePlugin.h:62,
2025-09-08T01:47:28,693                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:64,
2025-09-08T01:47:28,693                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2025-09-08T01:47:28,693   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:47:28,693      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:47:28,693         |                           ^~~~~~~~~~~~~~
2025-09-08T01:47:28,694   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:47:28,694                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:47:28,694                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:47:28,694                    from /usr/include/c++/14/ios:44,
2025-09-08T01:47:28,694                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:47:28,694                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2025-09-08T01:47:28,694   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:47:28,694     117 |     struct unary_function
2025-09-08T01:47:28,694         |            ^~~~~~~~~~~~~~
2025-09-08T01:47:29,033   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2025-09-08T01:47:29,033   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:462:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T01:47:29,033     462 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T01:47:29,033         |                  ^
2025-09-08T01:47:29,033   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:458:50: note: ‘attribute’ declared here
2025-09-08T01:47:29,033     458 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2025-09-08T01:47:29,034         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:47:29,034   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:462:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T01:47:29,034     462 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T01:47:29,034         |                                             ^
2025-09-08T01:47:29,034   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:459:50: note: ‘wrongattribute’ declared here
2025-09-08T01:47:29,034     459 |                               const std::string& wrongattribute)
2025-09-08T01:47:29,034         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T01:47:29,524   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:462:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:29,524     462 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T01:47:29,524         |                  ^
2025-09-08T01:47:29,524   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:462:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:29,524     462 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T01:47:29,525         |                                             ^
2025-09-08T01:47:34,355   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:47:34,356                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:47:34,356                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:47:34,356                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:47:34,356                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:47:34,356                    from ./base//sbml/packages/comp/sbml/CompBase.h:44,
2025-09-08T01:47:34,356                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:30:
2025-09-08T01:47:34,356   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:47:34,356      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:47:34,356         |                           ^~~~~~~~~~~~~~
2025-09-08T01:47:34,357   In file included from /usr/include/c++/14/bits/stl_tree.h:65,
2025-09-08T01:47:34,357                    from /usr/include/c++/14/set:62,
2025-09-08T01:47:34,357                    from ./base//sbml/packages/comp/sbml/CompBase.h:41:
2025-09-08T01:47:34,357   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:47:34,357     117 |     struct unary_function
2025-09-08T01:47:34,357         |            ^~~~~~~~~~~~~~
2025-09-08T01:47:34,764   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T01:47:34,764   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T01:47:34,764     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:47:34,764         |                   ^
2025-09-08T01:47:34,764   ./base/sbml/packages/comp/sbml/CompBase.cpp:157:48: note: ‘attributes’ declared here
2025-09-08T01:47:34,764     157 | CompBase::readAttributes (const XMLAttributes& attributes,
2025-09-08T01:47:34,765         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T01:47:34,765   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T01:47:34,765     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:47:34,765         |                                                  ^
2025-09-08T01:47:34,765   ./base/sbml/packages/comp/sbml/CompBase.cpp:158:53: note: ‘expectedAttributes’ declared here
2025-09-08T01:47:34,765     158 |                           const ExpectedAttributes& expectedAttributes)
2025-09-08T01:47:34,765         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T01:47:34,767   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T01:47:34,767   ./base/sbml/packages/comp/sbml/CompBase.cpp:202:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:47:34,767     202 |   if(&element == NULL) return;
2025-09-08T01:47:34,767         |               ^
2025-09-08T01:47:34,767   ./base/sbml/packages/comp/sbml/CompBase.cpp:200:48: note: ‘element’ declared here
2025-09-08T01:47:34,767     200 | CompBase::logUnknownElement(const std::string &element)
2025-09-08T01:47:34,767         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:47:34,773   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T01:47:34,774   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T01:47:34,774     226 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:34,774         |                  ^
2025-09-08T01:47:34,774   ./base/sbml/packages/comp/sbml/CompBase.cpp:223:50: note: ‘attribute’ declared here
2025-09-08T01:47:34,774     223 | CompBase::logUnknownAttribute(const std::string &attribute,
2025-09-08T01:47:34,774         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:47:34,774   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:47:34,774     226 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:34,774         |                                      ^
2025-09-08T01:47:34,774   ./base/sbml/packages/comp/sbml/CompBase.cpp:224:50: note: ‘element’ declared here
2025-09-08T01:47:34,775     224 |                               const std::string& element)
2025-09-08T01:47:34,775         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:47:34,781   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T01:47:34,781   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T01:47:34,781     260 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:34,781         |                  ^
2025-09-08T01:47:34,781   ./base/sbml/packages/comp/sbml/CompBase.cpp:256:45: note: ‘attribute’ declared here
2025-09-08T01:47:34,781     256 | CompBase::logEmptyString(const std::string &attribute,
2025-09-08T01:47:34,782         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:47:34,782   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:47:34,782     260 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:34,782         |                                      ^
2025-09-08T01:47:34,782   ./base/sbml/packages/comp/sbml/CompBase.cpp:257:45: note: ‘element’ declared here
2025-09-08T01:47:34,782     257 |                          const std::string& element)
2025-09-08T01:47:34,782         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:47:34,786   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T01:47:34,786   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T01:47:34,786     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T01:47:34,786         |                  ^
2025-09-08T01:47:34,786   ./base/sbml/packages/comp/sbml/CompBase.cpp:277:43: note: ‘attribute’ declared here
2025-09-08T01:47:34,786     277 | CompBase::logInvalidId(const std::string& attribute,
2025-09-08T01:47:34,786         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:47:34,786   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T01:47:34,787     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T01:47:34,787         |                                             ^
2025-09-08T01:47:34,787   ./base/sbml/packages/comp/sbml/CompBase.cpp:278:43: note: ‘wrongattribute’ declared here
2025-09-08T01:47:34,787     278 |                        const std::string& wrongattribute,
2025-09-08T01:47:34,787         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T01:47:34,804   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T01:47:34,804   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T01:47:34,804     378 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:34,804         |                  ^
2025-09-08T01:47:34,805   ./base/sbml/packages/comp/sbml/CompBase.cpp:374:50: note: ‘attribute’ declared here
2025-09-08T01:47:34,805     374 | CompBase::logMissingAttribute(const std::string& attribute,
2025-09-08T01:47:34,805         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:47:34,805   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T01:47:34,805     378 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:34,805         |                                      ^
2025-09-08T01:47:34,805   ./base/sbml/packages/comp/sbml/CompBase.cpp:375:50: note: ‘element’ declared here
2025-09-08T01:47:34,805     375 |                               const std::string& element)
2025-09-08T01:47:34,805         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:47:35,372   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T01:47:35,372   ./base/sbml/packages/comp/sbml/CompBase.cpp:202:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,372     202 |   if(&element == NULL) return;
2025-09-08T01:47:35,372         |   ^~
2025-09-08T01:47:35,372   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T01:47:35,373   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,373     226 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:35,373         |                  ^
2025-09-08T01:47:35,373   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,373     226 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:35,373         |                                      ^
2025-09-08T01:47:35,373   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T01:47:35,373   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,373     260 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:35,374         |                  ^
2025-09-08T01:47:35,374   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,374     260 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:35,374         |                                      ^
2025-09-08T01:47:35,375   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T01:47:35,375   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,375     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T01:47:35,375         |                  ^
2025-09-08T01:47:35,375   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,375     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T01:47:35,375         |                                             ^
2025-09-08T01:47:35,376   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T01:47:35,376   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,376     378 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:35,376         |                  ^
2025-09-08T01:47:35,376   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,376     378 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T01:47:35,377         |                                      ^
2025-09-08T01:47:35,384   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T01:47:35,385   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,385     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:47:35,385         |                   ^
2025-09-08T01:47:35,385   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:35,385     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T01:47:35,385         |                                                  ^
2025-09-08T01:47:40,969   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:47:40,969                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:47:40,969                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:47:40,969                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:47:40,969                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:47:40,970                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:47:40,970                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2025-09-08T01:47:40,970   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:47:40,970      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:47:40,970         |                           ^~~~~~~~~~~~~~
2025-09-08T01:47:40,970   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:47:40,970                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:47:40,970                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:47:40,970                    from /usr/include/c++/14/ios:44,
2025-09-08T01:47:40,971                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:47:40,971                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:47:40,971                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2025-09-08T01:47:40,971   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:47:40,971     117 |     struct unary_function
2025-09-08T01:47:40,971         |            ^~~~~~~~~~~~~~
2025-09-08T01:47:46,426   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:47:46,427                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:47:46,427                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:47:46,427                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:47:46,427                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:47:46,427                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:47:46,427                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2025-09-08T01:47:46,427   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:47:46,427      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:47:46,428         |                           ^~~~~~~~~~~~~~
2025-09-08T01:47:46,428   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:47:46,428                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:47:46,428                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:47:46,428                    from /usr/include/c++/14/ios:44,
2025-09-08T01:47:46,428                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:47:46,428                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:47:46,428                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2025-09-08T01:47:46,428   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:47:46,428     117 |     struct unary_function
2025-09-08T01:47:46,429         |            ^~~~~~~~~~~~~~
2025-09-08T01:47:55,698   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:47:55,698                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:47:55,698                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:47:55,698                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:47:55,698                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:47:55,698                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:47:55,699                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2025-09-08T01:47:55,699   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:47:55,699      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:47:55,699         |                           ^~~~~~~~~~~~~~
2025-09-08T01:47:55,699   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:47:55,699                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:47:55,699                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:47:55,699                    from /usr/include/c++/14/ios:44,
2025-09-08T01:47:55,699                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:47:55,700                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:47:55,700                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2025-09-08T01:47:55,700   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:47:55,700     117 |     struct unary_function
2025-09-08T01:47:55,700         |            ^~~~~~~~~~~~~~
2025-09-08T01:47:56,014   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2025-09-08T01:47:56,014   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:47:56,014     118 |   if (&(sid) != NULL)
2025-09-08T01:47:56,014         |              ^
2025-09-08T01:47:56,014   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2025-09-08T01:47:56,015     113 | ListOfDeletions::remove (const std::string& sid)
2025-09-08T01:47:56,015         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:47:56,491   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:47:56,491     118 |   if (&(sid) != NULL)
2025-09-08T01:47:56,491         |   ^~
2025-09-08T01:48:00,261   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:00,261                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:00,261                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:00,261                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:00,261                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:00,261                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:00,261                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2025-09-08T01:48:00,262   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:00,262      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:00,262         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:00,262   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:00,262                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:00,262                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:00,262                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:00,262                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:00,262                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:00,263                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2025-09-08T01:48:00,263   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:00,263     117 |     struct unary_function
2025-09-08T01:48:00,263         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:04,852   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:04,853                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:04,853                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:04,853                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:04,853                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:04,853                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:04,853                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2025-09-08T01:48:04,853   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:04,853      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:04,853         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:04,854   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:04,854                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:04,854                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:04,854                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:04,854                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:04,854                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:04,854                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2025-09-08T01:48:04,854   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:04,854     117 |     struct unary_function
2025-09-08T01:48:04,854         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:09,391   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:09,391                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:09,392                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:09,392                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:09,392                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:09,392                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:09,392                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2025-09-08T01:48:09,392   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:09,392      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:09,392         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:09,392   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:09,393                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:09,393                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:09,393                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:09,393                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:09,393                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:09,393                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2025-09-08T01:48:09,393   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:09,393     117 |     struct unary_function
2025-09-08T01:48:09,393         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:09,702   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2025-09-08T01:48:09,702   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:48:09,703     113 |   if (&(sid) != NULL)
2025-09-08T01:48:09,703         |              ^
2025-09-08T01:48:09,703   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2025-09-08T01:48:09,703     108 | ListOfPorts::remove (const std::string& sid)
2025-09-08T01:48:09,703         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:48:10,172   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:48:10,172     113 |   if (&(sid) != NULL)
2025-09-08T01:48:10,172         |   ^~
2025-09-08T01:48:13,887   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:13,887                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:13,887                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:13,887                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:13,887                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:13,887                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:13,887                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2025-09-08T01:48:13,887   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:13,888      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:13,888         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:13,888   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:13,888                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:13,888                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:13,888                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:13,888                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:13,888                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:13,888                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2025-09-08T01:48:13,889   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:13,889     117 |     struct unary_function
2025-09-08T01:48:13,889         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:18,092   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:18,093                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:18,093                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:18,093                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:18,093                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:18,093                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:18,093                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2025-09-08T01:48:18,093   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:18,093      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:18,093         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:18,094   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:18,094                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:18,094                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:18,094                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:18,094                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:18,094                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:18,095                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2025-09-08T01:48:18,095   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:18,095     117 |     struct unary_function
2025-09-08T01:48:18,095         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:18,412   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2025-09-08T01:48:18,412   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T01:48:18,412     113 |   if (&(sid) != NULL)
2025-09-08T01:48:18,412         |              ^
2025-09-08T01:48:18,412   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2025-09-08T01:48:18,412     108 | ListOfSubmodels::remove (const std::string& sid)
2025-09-08T01:48:18,412         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:48:18,888   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:48:18,888     113 |   if (&(sid) != NULL)
2025-09-08T01:48:18,888         |   ^~
2025-09-08T01:48:22,647   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:22,647                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:22,647                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:22,647                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:22,648                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:22,648                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:22,648                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2025-09-08T01:48:22,648   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:22,648      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:22,648         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:22,648   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:22,648                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:22,648                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:22,648                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:22,649                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:22,649                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:22,649                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2025-09-08T01:48:22,649   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:22,649     117 |     struct unary_function
2025-09-08T01:48:22,649         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:26,971   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:26,971                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:26,971                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:26,971                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:26,971                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:26,971                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:26,971                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2025-09-08T01:48:26,972   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:26,972      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:26,972         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:26,973   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:26,973                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:26,973                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:26,973                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:26,973                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:26,973                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:26,973                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2025-09-08T01:48:26,973   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:26,973     117 |     struct unary_function
2025-09-08T01:48:26,973         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:32,275   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:55,
2025-09-08T01:48:32,275                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2025-09-08T01:48:32,275   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:32,275      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:32,275         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:32,276   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:32,276                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:32,276                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:32,276                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:32,276                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:32,276                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:32,276                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2025-09-08T01:48:32,276   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:32,276     117 |     struct unary_function
2025-09-08T01:48:32,276         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:36,943   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:36,944                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:36,944                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:36,944                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:36,944                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:36,944                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:36,944                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2025-09-08T01:48:36,944   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:36,944      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:36,944         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:36,945   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:36,945                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:36,945                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:36,945                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:36,945                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:36,945                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:36,945                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2025-09-08T01:48:36,945   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:36,945     117 |     struct unary_function
2025-09-08T01:48:36,946         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:43,808   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:43,808                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:43,808                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:43,808                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:43,809                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:43,809                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:43,809                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2025-09-08T01:48:43,809   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:43,809      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:43,809         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:43,809   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:43,809                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:43,809                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:43,810                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:43,810                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:43,810                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:43,810                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2025-09-08T01:48:43,810   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:43,810     117 |     struct unary_function
2025-09-08T01:48:43,810         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:50,807   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:48:50,807                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:48:50,807                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:48:50,807                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:48:50,808                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:48:50,808                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T01:48:50,808                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:37:
2025-09-08T01:48:50,808   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:50,808      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:50,808         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:50,809   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:50,809                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:50,809                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:50,809                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:50,809                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:50,809                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:50,809                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:28:
2025-09-08T01:48:50,809   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:50,809     117 |     struct unary_function
2025-09-08T01:48:50,810         |            ^~~~~~~~~~~~~~
2025-09-08T01:48:59,634   In file included from ./base//sbml/Rule.h:141,
2025-09-08T01:48:59,634                    from ./base//sbml/RateRule.h:113,
2025-09-08T01:48:59,635                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2025-09-08T01:48:59,635   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:48:59,635      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:48:59,635         |                           ^~~~~~~~~~~~~~
2025-09-08T01:48:59,636   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:48:59,636                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:48:59,636                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:48:59,636                    from /usr/include/c++/14/ios:44,
2025-09-08T01:48:59,636                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:48:59,636                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:48:59,636                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2025-09-08T01:48:59,636   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:48:59,636     117 |     struct unary_function
2025-09-08T01:48:59,637         |            ^~~~~~~~~~~~~~
2025-09-08T01:49:12,860   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:49:12,861                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:49:12,861                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:49:12,861                    from ./base//sbml/extension/SBasePlugin.h:62,
2025-09-08T01:49:12,861                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2025-09-08T01:49:12,861                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:483,
2025-09-08T01:49:12,861                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2025-09-08T01:49:12,861   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:49:12,861      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:49:12,861         |                           ^~~~~~~~~~~~~~
2025-09-08T01:49:12,862   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:49:12,862                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:49:12,862                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:49:12,862                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:482:
2025-09-08T01:49:12,863   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:49:12,863     117 |     struct unary_function
2025-09-08T01:49:12,863         |            ^~~~~~~~~~~~~~
2025-09-08T01:49:13,354   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:49:13,354   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:49:13,354     134 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T01:49:13,354         |              ^
2025-09-08T01:49:13,355   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:132:54: note: ‘props’ declared here
2025-09-08T01:49:13,355     132 |                         (const ConversionProperties &props) const
2025-09-08T01:49:13,355         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:49:14,169   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:49:14,169     134 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T01:49:14,169         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:49:23,183   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:49:23,184                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:49:23,184                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:49:23,184                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2025-09-08T01:49:23,184   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:49:23,184      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:49:23,184         |                           ^~~~~~~~~~~~~~
2025-09-08T01:49:23,184   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:49:23,184                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2025-09-08T01:49:23,184                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2025-09-08T01:49:23,185   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:49:23,185     117 |     struct unary_function
2025-09-08T01:49:23,185         |            ^~~~~~~~~~~~~~
2025-09-08T01:49:23,523   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T01:49:23,523   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:49:23,523      54 |   if (&orig == NULL)
2025-09-08T01:49:23,524         |             ^
2025-09-08T01:49:23,524   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2025-09-08T01:49:23,524      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2025-09-08T01:49:23,524         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:49:23,525   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2025-09-08T01:49:23,525   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:49:23,525      80 |   if (&rhs == NULL)
2025-09-08T01:49:23,525         |            ^
2025-09-08T01:49:23,525   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2025-09-08T01:49:23,526      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2025-09-08T01:49:23,526         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:49:24,005   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:49:24,005      80 |   if (&rhs == NULL)
2025-09-08T01:49:24,005         |   ^~
2025-09-08T01:49:24,012   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T01:49:24,012   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:49:24,012      54 |   if (&orig == NULL)
2025-09-08T01:49:24,012         |   ^~
2025-09-08T01:49:27,921   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:49:27,921                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:49:27,921                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:49:27,921                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2025-09-08T01:49:27,921   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:49:27,922      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:49:27,922         |                           ^~~~~~~~~~~~~~
2025-09-08T01:49:27,922   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:49:27,923                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2025-09-08T01:49:27,923                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2025-09-08T01:49:27,923   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:49:27,923     117 |     struct unary_function
2025-09-08T01:49:27,923         |            ^~~~~~~~~~~~~~
2025-09-08T01:49:28,181   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T01:49:28,181   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:49:28,182      50 |   if (&orig == NULL)
2025-09-08T01:49:28,182         |             ^
2025-09-08T01:49:28,182   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2025-09-08T01:49:28,182      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2025-09-08T01:49:28,182         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:49:28,184   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T01:49:28,184   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:49:28,184      76 |   if (&rhs == NULL)
2025-09-08T01:49:28,184         |            ^
2025-09-08T01:49:28,184   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2025-09-08T01:49:28,184      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2025-09-08T01:49:28,185         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:49:28,577   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T01:49:28,577   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:49:28,577      50 |   if (&orig == NULL)
2025-09-08T01:49:28,578         |   ^~
2025-09-08T01:49:28,578   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T01:49:28,578   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:49:28,578      76 |   if (&rhs == NULL)
2025-09-08T01:49:28,579         |   ^~
2025-09-08T01:49:31,572   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:49:31,572                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:49:31,572                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:49:31,573                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2025-09-08T01:49:31,573   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:49:31,573      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:49:31,573         |                           ^~~~~~~~~~~~~~
2025-09-08T01:49:31,573   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T01:49:31,573                    from /usr/include/c++/14/vector:68,
2025-09-08T01:49:31,573                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2025-09-08T01:49:31,573   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:49:31,573     117 |     struct unary_function
2025-09-08T01:49:31,574         |            ^~~~~~~~~~~~~~
2025-09-08T01:49:35,911   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:49:35,911                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:49:35,911                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:49:35,911                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2025-09-08T01:49:35,911   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:49:35,912      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:49:35,912         |                           ^~~~~~~~~~~~~~
2025-09-08T01:49:35,912   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:49:35,912                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2025-09-08T01:49:35,912                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2025-09-08T01:49:35,912   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:49:35,912     117 |     struct unary_function
2025-09-08T01:49:35,912         |            ^~~~~~~~~~~~~~
2025-09-08T01:49:36,158   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T01:49:36,159   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:49:36,159      53 |   if (&orig == NULL)
2025-09-08T01:49:36,159         |             ^
2025-09-08T01:49:36,159   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2025-09-08T01:49:36,159      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2025-09-08T01:49:36,159         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:49:36,161   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T01:49:36,161   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:49:36,161      83 |   if (&rhs == NULL)
2025-09-08T01:49:36,161         |            ^
2025-09-08T01:49:36,161   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2025-09-08T01:49:36,161      81 | SBMLUri::operator=(const SBMLUri& rhs)
2025-09-08T01:49:36,162         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T01:49:36,170   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2025-09-08T01:49:36,170   ./base/sbml/packages/comp/util/SBMLUri.cpp:164:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T01:49:36,170     164 |     ptr_fun<int,int>(tolower)); // scheme is icase
2025-09-08T01:49:36,170         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:49:36,170   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T01:49:36,171    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T01:49:36,171         |     ^~~~~~~
2025-09-08T01:49:36,175   ./base/sbml/packages/comp/util/SBMLUri.cpp:202:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T01:49:36,175     202 |      ptr_fun<int,int>(tolower)); // host is icase
2025-09-08T01:49:36,175         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T01:49:36,175   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T01:49:36,175    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T01:49:36,175         |     ^~~~~~~
2025-09-08T01:49:36,638   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T01:49:36,638   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:49:36,639      53 |   if (&orig == NULL)
2025-09-08T01:49:36,639         |   ^~
2025-09-08T01:49:36,639   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T01:49:36,639   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:49:36,639      83 |   if (&rhs == NULL)
2025-09-08T01:49:36,639         |   ^~
2025-09-08T01:49:40,912   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:49:40,912                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:49:40,912                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:49:40,912                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2025-09-08T01:49:40,913                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2025-09-08T01:49:40,913   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:49:40,913      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:49:40,913         |                           ^~~~~~~~~~~~~~
2025-09-08T01:49:40,913   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:49:40,913                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2025-09-08T01:49:40,914                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2025-09-08T01:49:40,914                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2025-09-08T01:49:40,914   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:49:40,914     117 |     struct unary_function
2025-09-08T01:49:40,914         |            ^~~~~~~~~~~~~~
2025-09-08T01:49:56,869   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:49:56,869                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:49:56,869                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:49:56,869                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2025-09-08T01:49:56,869                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2025-09-08T01:49:56,869   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:49:56,869      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:49:56,870         |                           ^~~~~~~~~~~~~~
2025-09-08T01:49:56,870   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:49:56,870                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2025-09-08T01:49:56,870                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2025-09-08T01:49:56,870                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2025-09-08T01:49:56,871   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:49:56,871     117 |     struct unary_function
2025-09-08T01:49:56,871         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:00,682   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:50:00,682                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:50:00,682                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:50:00,682                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2025-09-08T01:50:00,683                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2025-09-08T01:50:00,683   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:00,683      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:00,683         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:00,683   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:00,683                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2025-09-08T01:50:00,683                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2025-09-08T01:50:00,683                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2025-09-08T01:50:00,683   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:00,684     117 |     struct unary_function
2025-09-08T01:50:00,684         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:04,518   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:50:04,518                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:50:04,518                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:50:04,518                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2025-09-08T01:50:04,518   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:04,518      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:04,519         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:04,519   In file included from /usr/include/c++/14/functional:49,
2025-09-08T01:50:04,519                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2025-09-08T01:50:04,519   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:04,519     117 |     struct unary_function
2025-09-08T01:50:04,519         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:05,134   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:05,134      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T01:50:05,134         |                       ^~~~~~~~~~~~~~
2025-09-08T01:50:05,135   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:05,135     117 |     struct unary_function
2025-09-08T01:50:05,135         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:05,302   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T01:50:05,302   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T01:50:05,302     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T01:50:05,302         |            ^
2025-09-08T01:50:05,303   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2025-09-08T01:50:05,303     325 |   virtual bool visit (const SBase &x)
2025-09-08T01:50:05,303         |                       ~~~~~~~~~~~~~^
2025-09-08T01:50:05,317   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T01:50:05,317   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T01:50:05,318     481 |   if (&d == NULL) return 0;
2025-09-08T01:50:05,318         |          ^
2025-09-08T01:50:05,318   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2025-09-08T01:50:05,318     479 | CompValidator::validate (const SBMLDocument& d)
2025-09-08T01:50:05,318         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T01:50:05,331   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T01:50:05,331   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T01:50:05,331     610 |   if (&filename == NULL) return 0;
2025-09-08T01:50:05,332         |                 ^
2025-09-08T01:50:05,332   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2025-09-08T01:50:05,332     608 | CompValidator::validate (const std::string& filename)
2025-09-08T01:50:05,332         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:50:06,110   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T01:50:06,110   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:50:06,110     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T01:50:06,110         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:50:06,127   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T01:50:06,128   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:50:06,128     481 |   if (&d == NULL) return 0;
2025-09-08T01:50:06,128         |   ^~
2025-09-08T01:50:06,156   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T01:50:06,156   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:50:06,156     610 |   if (&filename == NULL) return 0;
2025-09-08T01:50:06,156         |   ^~
2025-09-08T01:50:11,352   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:50:11,352                    from ./base//sbml/Model.h:446,
2025-09-08T01:50:11,352                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2025-09-08T01:50:11,352   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:11,352      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:11,352         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:11,353   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:11,353                    from ./base//sbml/Model.h:444:
2025-09-08T01:50:11,353   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:11,353     117 |     struct unary_function
2025-09-08T01:50:11,353         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:15,600   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:50:15,600                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:50:15,600                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:50:15,600                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2025-09-08T01:50:15,601   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:15,601      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:15,601         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:15,601   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:15,601                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:50:15,601   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:15,601     117 |     struct unary_function
2025-09-08T01:50:15,601         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:19,844   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:50:19,845                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:50:19,845                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:50:19,845                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T01:50:19,845                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2025-09-08T01:50:19,845   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:19,845      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:19,845         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:19,845   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:19,846                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2025-09-08T01:50:19,846   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:19,846     117 |     struct unary_function
2025-09-08T01:50:19,846         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:23,911   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:50:23,911                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:50:23,912                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:50:23,912                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2025-09-08T01:50:23,912   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:23,912      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:23,912         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:23,912   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:23,912                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:50:23,912   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:23,912     117 |     struct unary_function
2025-09-08T01:50:23,913         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:27,651   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:50:27,651                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:50:27,651                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:50:27,651                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2025-09-08T01:50:27,651   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:27,651      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:27,651         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:27,652   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:27,652                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:50:27,652   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:27,652     117 |     struct unary_function
2025-09-08T01:50:27,652         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:31,561   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:50:31,561                    from ./base//sbml/Model.h:446,
2025-09-08T01:50:31,562                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2025-09-08T01:50:31,562   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:31,562      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:31,562         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:31,562   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:31,562                    from ./base//sbml/Model.h:444:
2025-09-08T01:50:31,562   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:31,562     117 |     struct unary_function
2025-09-08T01:50:31,562         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:38,775   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:50:38,775                    from ./base//sbml/Model.h:446,
2025-09-08T01:50:38,775                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2025-09-08T01:50:38,776   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:38,776      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:38,776         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:38,776   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:38,776                    from ./base//sbml/Model.h:444:
2025-09-08T01:50:38,776   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:38,776     117 |     struct unary_function
2025-09-08T01:50:38,776         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:43,151   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:50:43,151                    from ./base//sbml/Model.h:446,
2025-09-08T01:50:43,151                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2025-09-08T01:50:43,151   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:43,151      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:43,151         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:43,152   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:43,152                    from ./base//sbml/Model.h:444:
2025-09-08T01:50:43,152   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:43,152     117 |     struct unary_function
2025-09-08T01:50:43,152         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:50,298   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:50:50,298                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:50:50,299                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:50:50,299                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T01:50:50,299                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2025-09-08T01:50:50,299                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2025-09-08T01:50:50,299   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:50,299      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:50,299         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:50,299   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:50,300                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:50:50,300                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T01:50:50,300                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T01:50:50,300                    from ./base//sbml/SBase.h:145,
2025-09-08T01:50:50,300                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2025-09-08T01:50:50,300   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:50,300     117 |     struct unary_function
2025-09-08T01:50:50,300         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:55,106   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:50:55,107                    from ./base//sbml/Model.h:446,
2025-09-08T01:50:55,107                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2025-09-08T01:50:55,107   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:55,107      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:55,107         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:55,108   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:55,108                    from ./base//sbml/Model.h:444:
2025-09-08T01:50:55,108   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:55,108     117 |     struct unary_function
2025-09-08T01:50:55,108         |            ^~~~~~~~~~~~~~
2025-09-08T01:50:59,126   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:50:59,126                    from ./base//sbml/Model.h:446,
2025-09-08T01:50:59,126                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2025-09-08T01:50:59,127   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:50:59,127      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:50:59,127         |                           ^~~~~~~~~~~~~~
2025-09-08T01:50:59,127   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:50:59,128                    from ./base//sbml/Model.h:444:
2025-09-08T01:50:59,128   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:50:59,128     117 |     struct unary_function
2025-09-08T01:50:59,128         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:03,060   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:51:03,061                    from ./base//sbml/Model.h:446,
2025-09-08T01:51:03,061                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2025-09-08T01:51:03,061   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:03,061      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:03,061         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:03,061   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:03,061                    from ./base//sbml/Model.h:444:
2025-09-08T01:51:03,061   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:03,062     117 |     struct unary_function
2025-09-08T01:51:03,062         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:07,018   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:51:07,018                    from ./base//sbml/Model.h:446,
2025-09-08T01:51:07,018                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2025-09-08T01:51:07,018   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:07,018      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:07,018         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:07,019   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:07,019                    from ./base//sbml/Model.h:444:
2025-09-08T01:51:07,019   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:07,019     117 |     struct unary_function
2025-09-08T01:51:07,019         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:11,107   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:51:11,107                    from ./base//sbml/Model.h:446,
2025-09-08T01:51:11,107                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2025-09-08T01:51:11,107   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:11,107      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:11,107         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:11,108   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:11,108                    from ./base//sbml/Model.h:444:
2025-09-08T01:51:11,108   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:11,108     117 |     struct unary_function
2025-09-08T01:51:11,108         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:15,377   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:51:15,377                    from ./base//sbml/Model.h:446,
2025-09-08T01:51:15,377                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2025-09-08T01:51:15,377   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:15,377      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:15,377         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:15,378   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:15,378                    from ./base//sbml/Model.h:444:
2025-09-08T01:51:15,378   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:15,378     117 |     struct unary_function
2025-09-08T01:51:15,378         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:20,357   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:51:20,357                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:51:20,358                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:51:20,358                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:51:20,358                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:51:20,358                    from ./base//sbml/extension/SBMLExtensionRegister.h:55,
2025-09-08T01:51:20,358                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2025-09-08T01:51:20,358   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:20,358      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:20,358         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:20,359   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:20,359                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:51:20,359                    from ./base//sbml/SBMLError.h:457,
2025-09-08T01:51:20,359                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T01:51:20,359   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:20,359     117 |     struct unary_function
2025-09-08T01:51:20,359         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:20,716   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:51:20,716                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T01:51:20,716                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2025-09-08T01:51:20,716   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:20,716     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:20,716         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:51:20,716   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:20,717     117 |     struct unary_function
2025-09-08T01:51:20,717         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:20,723   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:20,724     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:20,724         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:51:20,724   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:20,724     117 |     struct unary_function
2025-09-08T01:51:20,724         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:20,740   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T01:51:20,740   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:20,740     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:20,740         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:51:20,740   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:20,741     117 |     struct unary_function
2025-09-08T01:51:20,741         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:25,322   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:51:25,323                    from ./base//sbml/Model.h:446,
2025-09-08T01:51:25,323                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42,
2025-09-08T01:51:25,323                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2025-09-08T01:51:25,323   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:25,323      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:25,323         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:25,323   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:25,323                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:51:25,323                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:51:25,324                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:41:
2025-09-08T01:51:25,324   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:25,324     117 |     struct unary_function
2025-09-08T01:51:25,324         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:25,646   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:51:25,646                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47:
2025-09-08T01:51:25,646   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:25,646     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:25,646         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:51:25,647   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:25,647     117 |     struct unary_function
2025-09-08T01:51:25,647         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:25,653   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:25,653     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:25,653         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:51:25,653   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:25,653     117 |     struct unary_function
2025-09-08T01:51:25,653         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:25,677   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T01:51:25,678   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:25,678     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:25,678         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:51:25,678   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:25,678     117 |     struct unary_function
2025-09-08T01:51:25,678         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:31,221   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:51:31,222                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:51:31,222                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:51:31,222                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2025-09-08T01:51:31,222                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:48,
2025-09-08T01:51:31,222                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2025-09-08T01:51:31,222   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:31,222      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:31,222         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:31,223   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:31,223                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:51:31,223                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:51:31,223                    from /usr/include/c++/14/ios:44,
2025-09-08T01:51:31,223                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:51:31,223                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2025-09-08T01:51:31,223   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:31,224     117 |     struct unary_function
2025-09-08T01:51:31,224         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:35,186   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:51:35,186                    from ./base//sbml/Model.h:446,
2025-09-08T01:51:35,186                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44,
2025-09-08T01:51:35,186                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2025-09-08T01:51:35,187   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:35,187      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:35,187         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:35,187   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:35,187                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:51:35,187                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:51:35,187                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:43:
2025-09-08T01:51:35,187   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:35,187     117 |     struct unary_function
2025-09-08T01:51:35,188         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:35,497   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:51:35,497                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:49:
2025-09-08T01:51:35,498   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:35,498     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:35,498         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:51:35,498   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:35,498     117 |     struct unary_function
2025-09-08T01:51:35,498         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:35,504   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:35,504     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:35,505         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:51:35,505   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:35,505     117 |     struct unary_function
2025-09-08T01:51:35,505         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:35,529   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2025-09-08T01:51:35,530   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:35,530     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:35,530         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:51:35,530   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:35,530     117 |     struct unary_function
2025-09-08T01:51:35,530         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:41,186   In file included from ./base//sbml/packages/fbc/sbml/Association.h:51,
2025-09-08T01:51:41,187                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2025-09-08T01:51:41,187   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:41,187      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:41,187         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:41,187   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:41,187                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:51:41,187                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:51:41,187                    from /usr/include/c++/14/ios:44,
2025-09-08T01:51:41,187                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:51:41,188                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:51:41,188                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2025-09-08T01:51:41,188   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:41,188     117 |     struct unary_function
2025-09-08T01:51:41,188         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:48,482   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:71,
2025-09-08T01:51:48,482                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2025-09-08T01:51:48,482   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:48,482      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:48,482         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:48,482   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:48,482                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:51:48,482                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:51:48,483                    from /usr/include/c++/14/ios:44,
2025-09-08T01:51:48,483                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:51:48,483                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:51:48,483                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2025-09-08T01:51:48,483   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:48,483     117 |     struct unary_function
2025-09-08T01:51:48,483         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:55,696   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:48,
2025-09-08T01:51:55,696                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2025-09-08T01:51:55,696   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:55,697      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:51:55,697         |                           ^~~~~~~~~~~~~~
2025-09-08T01:51:55,697   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:51:55,697                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:51:55,697                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:51:55,697                    from /usr/include/c++/14/ios:44,
2025-09-08T01:51:55,697                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:51:55,697                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:51:55,697                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2025-09-08T01:51:55,697   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:55,698     117 |     struct unary_function
2025-09-08T01:51:55,698         |            ^~~~~~~~~~~~~~
2025-09-08T01:51:56,160   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:51:56,160     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:51:56,161         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:51:56,161   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:51:56,161     117 |     struct unary_function
2025-09-08T01:51:56,161         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:02,364   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:46,
2025-09-08T01:52:02,365                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2025-09-08T01:52:02,365   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:02,365      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:02,365         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:02,366   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:02,366                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:52:02,366                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:52:02,366                    from /usr/include/c++/14/ios:44,
2025-09-08T01:52:02,366                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:52:02,366                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:52:02,366                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2025-09-08T01:52:02,366   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:02,366     117 |     struct unary_function
2025-09-08T01:52:02,366         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:02,845   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:02,846     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:02,846         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:52:02,846   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:02,846     117 |     struct unary_function
2025-09-08T01:52:02,846         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:08,863   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T01:52:08,863                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2025-09-08T01:52:08,863   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:08,863      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:08,863         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:08,864   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:08,864                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:52:08,864                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:52:08,864                    from /usr/include/c++/14/ios:44,
2025-09-08T01:52:08,864                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:52:08,864                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:52:08,864                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2025-09-08T01:52:08,864   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:08,865     117 |     struct unary_function
2025-09-08T01:52:08,865         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:09,324   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70:
2025-09-08T01:52:09,325   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:09,325     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:09,325         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:52:09,325   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:09,325     117 |     struct unary_function
2025-09-08T01:52:09,325         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:09,332   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:09,332     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:09,332         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:52:09,332   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:09,333     117 |     struct unary_function
2025-09-08T01:52:09,333         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:16,478   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:52:16,478                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:52:16,478                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:52:16,478                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:52:16,478                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:52:16,478                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35,
2025-09-08T01:52:16,478                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2025-09-08T01:52:16,478   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:16,479      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:16,479         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:16,479   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:16,479                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:52:16,479                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:52:16,479                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:34:
2025-09-08T01:52:16,479   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:16,479     117 |     struct unary_function
2025-09-08T01:52:16,479         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:16,797   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:52:16,798                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T01:52:16,798                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T01:52:16,798                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2025-09-08T01:52:16,798   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:16,798     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:16,798         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:52:16,798   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:16,798     117 |     struct unary_function
2025-09-08T01:52:16,799         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:16,804   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:16,805     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:16,805         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:52:16,805   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:16,805     117 |     struct unary_function
2025-09-08T01:52:16,805         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:16,820   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T01:52:16,820   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:16,820     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:16,820         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:52:16,821   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:16,821     117 |     struct unary_function
2025-09-08T01:52:16,821         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:16,831   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:52:16,831   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:110:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:52:16,831     110 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T01:52:16,832         |              ^
2025-09-08T01:52:16,832   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:108:68: note: ‘props’ declared here
2025-09-08T01:52:16,832     108 | CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:52:16,832         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:52:17,520   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:110:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:52:17,520     110 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T01:52:17,520         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:52:24,402   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:52:24,402                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:52:24,403                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:52:24,403                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:52:24,403                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T01:52:24,403                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35,
2025-09-08T01:52:24,403                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2025-09-08T01:52:24,403   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:24,403      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:24,403         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:24,403   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:24,404                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:52:24,404                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:52:24,404                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:34:
2025-09-08T01:52:24,404   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:24,404     117 |     struct unary_function
2025-09-08T01:52:24,404         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:24,722   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:52:24,722                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T01:52:24,722                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T01:52:24,722                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2025-09-08T01:52:24,723   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:24,723     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:24,723         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:52:24,723   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:24,723     117 |     struct unary_function
2025-09-08T01:52:24,723         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:24,729   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:24,729     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:24,729         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:52:24,729   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:24,729     117 |     struct unary_function
2025-09-08T01:52:24,730         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:24,745   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T01:52:24,745   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:24,745     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:24,745         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:52:24,745   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:24,745     117 |     struct unary_function
2025-09-08T01:52:24,745         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:24,754   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T01:52:24,754   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:100:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T01:52:24,755     100 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T01:52:24,755         |              ^
2025-09-08T01:52:24,755   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:98:70: note: ‘props’ declared here
2025-09-08T01:52:24,755      98 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T01:52:24,755         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T01:52:25,439   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:100:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:52:25,439     100 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T01:52:25,439         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:52:31,066   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:52:31,066                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:52:31,067                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:52:31,067                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2025-09-08T01:52:31,067                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2025-09-08T01:52:31,067   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:31,067      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:31,067         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:31,067   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:31,067                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2025-09-08T01:52:31,068                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2025-09-08T01:52:31,068                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2025-09-08T01:52:31,068   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:31,068     117 |     struct unary_function
2025-09-08T01:52:31,068         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:31,546   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:52:31,546                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T01:52:31,546   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:31,546     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:31,546         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:52:31,546   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:31,546     117 |     struct unary_function
2025-09-08T01:52:31,546         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:31,552   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:31,553     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:31,553         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:52:31,553   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:31,553     117 |     struct unary_function
2025-09-08T01:52:31,553         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:35,226   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:52:35,227                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:52:35,227                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:52:35,227                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2025-09-08T01:52:35,227                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2025-09-08T01:52:35,227   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:35,227      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:35,227         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:35,227   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:35,227                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2025-09-08T01:52:35,228                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2025-09-08T01:52:35,228                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2025-09-08T01:52:35,228   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:35,228     117 |     struct unary_function
2025-09-08T01:52:35,228         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:38,736   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:52:38,736                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:52:38,736                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:52:38,737                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2025-09-08T01:52:38,737   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:38,737      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:38,737         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:38,738   In file included from /usr/include/c++/14/functional:49,
2025-09-08T01:52:38,738                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2025-09-08T01:52:38,738   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:38,738     117 |     struct unary_function
2025-09-08T01:52:38,738         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:39,239   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:52:39,239                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T01:52:39,239                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T01:52:39,240                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2025-09-08T01:52:39,240   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:39,240     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:39,240         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:52:39,240   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:39,240     117 |     struct unary_function
2025-09-08T01:52:39,240         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:39,247   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:39,247     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:39,247         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:52:39,247   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:39,247     117 |     struct unary_function
2025-09-08T01:52:39,248         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:39,264   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T01:52:39,264   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:39,264     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:39,265         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:52:39,265   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:39,265     117 |     struct unary_function
2025-09-08T01:52:39,265         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:39,271   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:39,272      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T01:52:39,272         |                       ^~~~~~~~~~~~~~
2025-09-08T01:52:39,272   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:39,272     117 |     struct unary_function
2025-09-08T01:52:39,272         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:39,398   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T01:52:39,398   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T01:52:39,398     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T01:52:39,398         |            ^
2025-09-08T01:52:39,399   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2025-09-08T01:52:39,399     288 |   virtual bool visit (const SBase &x)
2025-09-08T01:52:39,399         |                       ~~~~~~~~~~~~~^
2025-09-08T01:52:39,409   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T01:52:39,410   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T01:52:39,410     383 |   if (&d == NULL) return 0;
2025-09-08T01:52:39,410         |          ^
2025-09-08T01:52:39,410   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2025-09-08T01:52:39,410     381 | FbcValidator::validate (const SBMLDocument& d)
2025-09-08T01:52:39,410         |                         ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T01:52:39,411   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T01:52:39,412   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T01:52:39,412     413 |   if (&filename == NULL) return 0;
2025-09-08T01:52:39,412         |                 ^
2025-09-08T01:52:39,412   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2025-09-08T01:52:39,412     411 | FbcValidator::validate (const std::string& filename)
2025-09-08T01:52:39,412         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:52:40,095   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T01:52:40,095   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:52:40,096     383 |   if (&d == NULL) return 0;
2025-09-08T01:52:40,096         |   ^~
2025-09-08T01:52:40,105   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T01:52:40,105   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:52:40,106     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T01:52:40,106         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:52:40,117   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T01:52:40,117   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:52:40,117     413 |   if (&filename == NULL) return 0;
2025-09-08T01:52:40,117         |   ^~
2025-09-08T01:52:43,957   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:52:43,958                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:52:43,958                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:52:43,958                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2025-09-08T01:52:43,958   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:43,958      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:43,958         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:43,958   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:43,958                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:52:43,959   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:43,959     117 |     struct unary_function
2025-09-08T01:52:43,959         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:44,440   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:52:44,441                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T01:52:44,441   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:44,441     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:44,441         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:52:44,441   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:44,441     117 |     struct unary_function
2025-09-08T01:52:44,441         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:44,447   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:44,448     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:44,448         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:52:44,448   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:44,448     117 |     struct unary_function
2025-09-08T01:52:44,448         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:47,508   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:52:47,508                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:52:47,509                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:52:47,509                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2025-09-08T01:52:47,509   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:47,509      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:47,509         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:47,509   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:47,509                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:52:47,509   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:47,509     117 |     struct unary_function
2025-09-08T01:52:47,510         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:51,120   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:52:51,120                    from ./base//sbml/Model.h:446,
2025-09-08T01:52:51,120                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2025-09-08T01:52:51,120   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:51,120      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:51,121         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:51,121   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:51,121                    from ./base//sbml/Model.h:444:
2025-09-08T01:52:51,121   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:51,121     117 |     struct unary_function
2025-09-08T01:52:51,121         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:51,491   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:52:51,491                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T01:52:51,491                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2025-09-08T01:52:51,491   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:51,491     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:51,491         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:52:51,492   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:51,492     117 |     struct unary_function
2025-09-08T01:52:51,492         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:51,498   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:51,498     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:51,498         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:52:51,498   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:51,498     117 |     struct unary_function
2025-09-08T01:52:51,498         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:51,522   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T01:52:51,523   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:51,523     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:51,523         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:52:51,523   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:51,523     117 |     struct unary_function
2025-09-08T01:52:51,523         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:55,136   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:52:55,136                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:52:55,136                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:52:55,136                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2025-09-08T01:52:55,136                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2025-09-08T01:52:55,136   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:55,137      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:52:55,137         |                           ^~~~~~~~~~~~~~
2025-09-08T01:52:55,137   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:52:55,137                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2025-09-08T01:52:55,137   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:55,137     117 |     struct unary_function
2025-09-08T01:52:55,137         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:55,550   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T01:52:55,551                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T01:52:55,551                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2025-09-08T01:52:55,551   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:55,551     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:55,551         |                                          ^~~~~~~~~~~~~~
2025-09-08T01:52:55,551   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:55,551     117 |     struct unary_function
2025-09-08T01:52:55,552         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:55,571   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:55,571     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:55,571         |                                      ^~~~~~~~~~~~~~
2025-09-08T01:52:55,572   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:55,572     117 |     struct unary_function
2025-09-08T01:52:55,572         |            ^~~~~~~~~~~~~~
2025-09-08T01:52:55,587   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T01:52:55,587   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:52:55,587     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T01:52:55,587         |                                            ^~~~~~~~~~~~~~
2025-09-08T01:52:55,587   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:52:55,587     117 |     struct unary_function
2025-09-08T01:52:55,587         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:00,138   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:53:00,139                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:53:00,139                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:53:00,139                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:53:00,139                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:53:00,139                    from ./base//sbml/extension/SBMLExtensionRegister.h:55,
2025-09-08T01:53:00,139                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2025-09-08T01:53:00,139   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:00,139      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:00,139         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:00,140   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:00,140                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:53:00,140                    from ./base//sbml/SBMLError.h:457,
2025-09-08T01:53:00,140                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T01:53:00,140   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:00,140     117 |     struct unary_function
2025-09-08T01:53:00,140         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:00,448   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:53:00,448                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:53:00,448                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T01:53:00,448                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:41:
2025-09-08T01:53:00,449   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:00,449     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:00,449         |                             ^~~~~~~~
2025-09-08T01:53:00,449   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:53:00,449     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:53:00,449         |                              ^~~~~~~~
2025-09-08T01:53:00,451   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:00,451     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:00,451         |                             ^~~~~~~~
2025-09-08T01:53:00,451   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:53:00,451   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:53:00,451     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:53:00,451         |                          ^~~~~~~~
2025-09-08T01:53:00,460   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:00,460     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:00,460         |                             ^~~~~~~~
2025-09-08T01:53:00,460   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:53:00,460                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:53:00,460   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:53:00,460     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:53:00,460         |                                   ^~~~~~~~
2025-09-08T01:53:00,465   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:00,465     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:00,465         |                             ^~~~~~~~
2025-09-08T01:53:00,465   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:53:00,465     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:53:00,465         |                           ^~~~~~~~
2025-09-08T01:53:00,468   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:00,468     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:00,468         |                             ^~~~~~~~
2025-09-08T01:53:00,468   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:53:00,468   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:53:00,468     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:53:00,468         |                      ^~~~~~~~
2025-09-08T01:53:05,427   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:53:05,427                    from ./base//sbml/Model.h:446,
2025-09-08T01:53:05,427                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49,
2025-09-08T01:53:05,428                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2025-09-08T01:53:05,428   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:05,428      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:05,428         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:05,428   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:05,428                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:53:05,428                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:53:05,428                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:48:
2025-09-08T01:53:05,428   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:05,429     117 |     struct unary_function
2025-09-08T01:53:05,429         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:05,763   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:53:05,764                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:53:05,764                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54:
2025-09-08T01:53:05,764   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:05,764     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:05,764         |                             ^~~~~~~~
2025-09-08T01:53:05,764   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:53:05,764     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:53:05,764         |                              ^~~~~~~~
2025-09-08T01:53:05,766   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:05,766     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:05,766         |                             ^~~~~~~~
2025-09-08T01:53:05,766   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:53:05,766   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:53:05,766     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:53:05,766         |                          ^~~~~~~~
2025-09-08T01:53:05,775   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:05,775     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:05,775         |                             ^~~~~~~~
2025-09-08T01:53:05,775   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:53:05,775                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:53:05,775   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:53:05,775     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:53:05,776         |                                   ^~~~~~~~
2025-09-08T01:53:05,780   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:05,780     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:05,780         |                             ^~~~~~~~
2025-09-08T01:53:05,780   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:53:05,780     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:53:05,780         |                           ^~~~~~~~
2025-09-08T01:53:05,783   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:05,783     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:05,783         |                             ^~~~~~~~
2025-09-08T01:53:05,783   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:53:05,784   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:53:05,784     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:53:05,784         |                      ^~~~~~~~
2025-09-08T01:53:10,043   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:53:10,043                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:53:10,043                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:53:10,043                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2025-09-08T01:53:10,043                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:58,
2025-09-08T01:53:10,043                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2025-09-08T01:53:10,043   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:10,044      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:10,044         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:10,044   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:10,044                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:53:10,044                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:53:10,044                    from ./base//sbml/extension/SBMLDocumentPlugin.h:57:
2025-09-08T01:53:10,044   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:10,044     117 |     struct unary_function
2025-09-08T01:53:10,044         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:14,458   In file included from ./base//sbml/SpeciesReference.h:260,
2025-09-08T01:53:14,458                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45,
2025-09-08T01:53:14,458                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2025-09-08T01:53:14,458   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:14,459      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:14,459         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:14,459   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:14,459                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:53:14,460                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:53:14,460                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:44:
2025-09-08T01:53:14,460   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:14,460     117 |     struct unary_function
2025-09-08T01:53:14,460         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:14,931   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:53:14,931                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:53:14,931                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:50:
2025-09-08T01:53:14,932   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:14,932     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:14,932         |                             ^~~~~~~~
2025-09-08T01:53:14,932   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:53:14,932     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:53:14,932         |                              ^~~~~~~~
2025-09-08T01:53:14,934   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:14,934     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:14,934         |                             ^~~~~~~~
2025-09-08T01:53:14,934   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:53:14,934   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:53:14,934     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:53:14,934         |                          ^~~~~~~~
2025-09-08T01:53:14,943   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:14,943     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:14,943         |                             ^~~~~~~~
2025-09-08T01:53:14,943   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:53:14,943                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:53:14,943   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:53:14,943     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:53:14,944         |                                   ^~~~~~~~
2025-09-08T01:53:14,948   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:14,948     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:14,948         |                             ^~~~~~~~
2025-09-08T01:53:14,948   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:53:14,948     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:53:14,948         |                           ^~~~~~~~
2025-09-08T01:53:14,951   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:14,951     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:14,951         |                             ^~~~~~~~
2025-09-08T01:53:14,951   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:53:14,951   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:53:14,951     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:53:14,952         |                      ^~~~~~~~
2025-09-08T01:53:18,518   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:53:18,518                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:53:18,518                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:53:18,518                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:53:18,519                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:53:18,519                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:53:18,519                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:53:18,519                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T01:53:18,519                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2025-09-08T01:53:18,519   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:18,519      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:18,519         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:18,519   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:18,520                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2025-09-08T01:53:18,520   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:18,520     117 |     struct unary_function
2025-09-08T01:53:18,520         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:24,703   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:53:24,704                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:53:24,704                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:53:24,704                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:53:24,704                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:53:24,704                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:53:24,704                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:53:24,704                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T01:53:24,704                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T01:53:24,705                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:53:24,705                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2025-09-08T01:53:24,705   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:24,705      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:24,705         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:24,705   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:24,705                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2025-09-08T01:53:24,705   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:24,705     117 |     struct unary_function
2025-09-08T01:53:24,705         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:25,016   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:25,016     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:25,016         |                             ^~~~~~~~
2025-09-08T01:53:25,017   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:53:25,017     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:53:25,017         |                              ^~~~~~~~
2025-09-08T01:53:25,019   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:25,019     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:25,019         |                             ^~~~~~~~
2025-09-08T01:53:25,019   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T01:53:25,019                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:33:
2025-09-08T01:53:25,019   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:53:25,019     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:53:25,019         |                          ^~~~~~~~
2025-09-08T01:53:25,028   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:25,028     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:25,028         |                             ^~~~~~~~
2025-09-08T01:53:25,028   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:53:25,028                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:53:25,028   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:53:25,028     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:53:25,028         |                                   ^~~~~~~~
2025-09-08T01:53:25,033   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:25,033     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:25,033         |                             ^~~~~~~~
2025-09-08T01:53:25,033   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:53:25,033     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:53:25,033         |                           ^~~~~~~~
2025-09-08T01:53:25,036   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:25,036     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:25,036         |                             ^~~~~~~~
2025-09-08T01:53:25,036   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:53:25,036   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:53:25,036     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:53:25,037         |                      ^~~~~~~~
2025-09-08T01:53:30,532   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:53:30,532                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:53:30,532                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:53:30,532                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:53:30,532                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:53:30,532                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:53:30,532                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:53:30,532                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2025-09-08T01:53:30,533                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:55,
2025-09-08T01:53:30,533                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2025-09-08T01:53:30,533   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:30,533      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:30,533         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:30,533   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:30,533                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:53:
2025-09-08T01:53:30,533   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:30,533     117 |     struct unary_function
2025-09-08T01:53:30,534         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:30,833   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:30,834     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T01:53:30,834         |                        ^~~~~~~~
2025-09-08T01:53:30,834   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T01:53:30,834     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T01:53:30,834         |                        ^~~~~~~~
2025-09-08T01:53:35,549   In file included from ./base//sbml/packages/layout/sbml/Curve.h:68,
2025-09-08T01:53:35,549                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2025-09-08T01:53:35,549   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:35,549      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:35,549         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:35,549   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:35,549                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:53:35,550                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:53:35,550                    from /usr/include/c++/14/ios:44,
2025-09-08T01:53:35,550                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:53:35,550                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:53:35,550                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2025-09-08T01:53:35,550   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:35,550     117 |     struct unary_function
2025-09-08T01:53:35,550         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:36,086   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69:
2025-09-08T01:53:36,086   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:36,086     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T01:53:36,086         |                        ^~~~~~~~
2025-09-08T01:53:36,087   In file included from ./base/sbml/packages/layout/sbml/Curve.cpp:35:
2025-09-08T01:53:36,087   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T01:53:36,087     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T01:53:36,087         |                        ^~~~~~~~
2025-09-08T01:53:41,651   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:53:41,651                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:53:41,651                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:53:41,652                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:53:41,652                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:53:41,652                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:53:41,652                    from ./base//sbml/packages/layout/sbml/Dimensions.h:56,
2025-09-08T01:53:41,652                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2025-09-08T01:53:41,652   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:41,652      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:41,652         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:41,652   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:41,653                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:53:41,653                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:53:41,653                    from /usr/include/c++/14/ios:44,
2025-09-08T01:53:41,653                    from /usr/include/c++/14/istream:40,
2025-09-08T01:53:41,653                    from /usr/include/c++/14/sstream:40,
2025-09-08T01:53:41,653                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2025-09-08T01:53:41,653   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:41,653     117 |     struct unary_function
2025-09-08T01:53:41,653         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:47,495   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:54,
2025-09-08T01:53:47,495                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2025-09-08T01:53:47,495   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:47,495      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:47,496         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:47,496   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:47,496                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:52:
2025-09-08T01:53:47,496   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:47,496     117 |     struct unary_function
2025-09-08T01:53:47,496         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:48,028   In file included from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:54,
2025-09-08T01:53:48,028                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:56:
2025-09-08T01:53:48,028   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:48,029     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:48,029         |                             ^~~~~~~~
2025-09-08T01:53:48,029   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T01:53:48,029     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T01:53:48,029         |                            ^~~~~~~~
2025-09-08T01:53:48,033   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:48,034     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:48,034         |                             ^~~~~~~~
2025-09-08T01:53:48,034   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T01:53:48,034     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T01:53:48,034         |                          ^~~~~~~~
2025-09-08T01:53:48,036   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:48,037     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:48,037         |                             ^~~~~~~~
2025-09-08T01:53:48,037   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:34:
2025-09-08T01:53:48,037   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:53:48,037     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:53:48,037         |                          ^~~~~~~~
2025-09-08T01:53:48,039   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:48,039     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:48,039         |                             ^~~~~~~~
2025-09-08T01:53:48,040   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:35:
2025-09-08T01:53:48,040   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:53:48,040     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:53:48,040         |                      ^~~~~~~~
2025-09-08T01:53:48,042   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:48,042     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:48,042         |                             ^~~~~~~~
2025-09-08T01:53:48,042   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:36:
2025-09-08T01:53:48,042   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:53:48,042     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:53:48,043         |                              ^~~~~~~~
2025-09-08T01:53:48,045   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:48,045     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:48,046         |                             ^~~~~~~~
2025-09-08T01:53:48,046   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:53:48,046                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:37:
2025-09-08T01:53:48,046   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:53:48,046     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:53:48,046         |                                   ^~~~~~~~
2025-09-08T01:53:48,050   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:48,051     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:48,051         |                             ^~~~~~~~
2025-09-08T01:53:48,051   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:53:48,051     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:53:48,051         |                           ^~~~~~~~
2025-09-08T01:53:55,521   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:53:55,521                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:53:55,522                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:53:55,522                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:53:55,522                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:53:55,522                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:53:55,522                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:53:55,522                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T01:53:55,522                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T01:53:55,522                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T01:53:55,522                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2025-09-08T01:53:55,522   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:53:55,523      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:53:55,523         |                           ^~~~~~~~~~~~~~
2025-09-08T01:53:55,523   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:53:55,523                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:53:55,523                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T01:53:55,523                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T01:53:55,523                    from ./base//sbml/SBase.h:145,
2025-09-08T01:53:55,523                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T01:53:55,523   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:53:55,523     117 |     struct unary_function
2025-09-08T01:53:55,524         |            ^~~~~~~~~~~~~~
2025-09-08T01:53:55,831   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:55,832     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:55,832         |                             ^~~~~~~~
2025-09-08T01:53:55,832   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:53:55,832                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T01:53:55,832                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T01:53:55,832                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:41:
2025-09-08T01:53:55,832   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:53:55,832     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:53:55,833         |                              ^~~~~~~~
2025-09-08T01:53:55,834   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:55,834     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:55,834         |                             ^~~~~~~~
2025-09-08T01:53:55,834   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:53:55,835   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:53:55,835     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:53:55,835         |                          ^~~~~~~~
2025-09-08T01:53:55,843   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:55,843     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:55,843         |                             ^~~~~~~~
2025-09-08T01:53:55,843   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:53:55,844                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:53:55,844   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:53:55,844     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:53:55,844         |                                   ^~~~~~~~
2025-09-08T01:53:55,848   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:55,848     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:55,848         |                             ^~~~~~~~
2025-09-08T01:53:55,848   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:53:55,849     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:53:55,849         |                           ^~~~~~~~
2025-09-08T01:53:55,851   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:55,851     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:55,852         |                             ^~~~~~~~
2025-09-08T01:53:55,852   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:53:55,852   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:53:55,852     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:53:55,852         |                      ^~~~~~~~
2025-09-08T01:53:55,872   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T01:53:55,872                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T01:53:55,872   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:55,872     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T01:53:55,873         |                        ^~~~~~~~
2025-09-08T01:53:55,873   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T01:53:55,873   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T01:53:55,873     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T01:53:55,873         |                        ^~~~~~~~
2025-09-08T01:53:55,875   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:55,876     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:55,876         |                             ^~~~~~~~
2025-09-08T01:53:55,876   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T01:53:55,876   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T01:53:55,876     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T01:53:55,876         |                            ^~~~~~~~
2025-09-08T01:53:55,881   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:53:55,881     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:53:55,881         |                             ^~~~~~~~
2025-09-08T01:53:55,881   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T01:53:55,881   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T01:53:55,881     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T01:53:55,882         |                          ^~~~~~~~
2025-09-08T01:53:55,906   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T01:53:55,906   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-08T01:53:55,906     373 |   if (&id != NULL && id.empty())
2025-09-08T01:53:55,907         |           ^
2025-09-08T01:53:55,907   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2025-09-08T01:53:55,907     371 | int GraphicalObject::setId(const std::string& id)
2025-09-08T01:53:55,907         |                            ~~~~~~~~~~~~~~~~~~~^~
2025-09-08T01:53:55,907   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T01:53:55,908   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T01:53:55,908     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T01:53:55,908         |               ^
2025-09-08T01:53:55,908   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2025-09-08T01:53:55,908     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2025-09-08T01:53:55,908         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T01:53:56,476   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T01:53:56,477   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:53:56,477     373 |   if (&id != NULL && id.empty())
2025-09-08T01:53:56,477         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2025-09-08T01:53:56,477   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T01:53:56,477   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:53:56,477     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T01:53:56,477         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2025-09-08T01:54:05,088   In file included from ./base//sbml/packages/layout/sbml/Layout.h:57,
2025-09-08T01:54:05,088                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2025-09-08T01:54:05,088   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:54:05,088      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:54:05,089         |                           ^~~~~~~~~~~~~~
2025-09-08T01:54:05,089   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:54:05,089                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:54:05,089                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:54:05,089                    from /usr/include/c++/14/ios:44,
2025-09-08T01:54:05,089                    from /usr/include/c++/14/ostream:40,
2025-09-08T01:54:05,089                    from /usr/include/c++/14/iostream:41,
2025-09-08T01:54:05,089                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2025-09-08T01:54:05,089   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:54:05,090     117 |     struct unary_function
2025-09-08T01:54:05,090         |            ^~~~~~~~~~~~~~
2025-09-08T01:54:05,628   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:54:05,628                    from ./base//sbml/packages/layout/sbml/Layout.h:59:
2025-09-08T01:54:05,628   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:05,628     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:05,628         |                             ^~~~~~~~
2025-09-08T01:54:05,629   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:54:05,629     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:54:05,629         |                              ^~~~~~~~
2025-09-08T01:54:05,631   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:05,631     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:05,631         |                             ^~~~~~~~
2025-09-08T01:54:05,631   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:54:05,631   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:54:05,631     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:54:05,631         |                          ^~~~~~~~
2025-09-08T01:54:05,640   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:05,640     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:05,640         |                             ^~~~~~~~
2025-09-08T01:54:05,640   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:54:05,640                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:54:05,640   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:54:05,640     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:54:05,641         |                                   ^~~~~~~~
2025-09-08T01:54:05,645   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:05,645     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:05,646         |                             ^~~~~~~~
2025-09-08T01:54:05,646   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:54:05,646     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:54:05,646         |                           ^~~~~~~~
2025-09-08T01:54:05,649   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:05,649     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:05,649         |                             ^~~~~~~~
2025-09-08T01:54:05,649   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:54:05,649   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:54:05,650     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:54:05,650         |                      ^~~~~~~~
2025-09-08T01:54:05,666   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:05,666     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:05,666         |                             ^~~~~~~~
2025-09-08T01:54:05,666   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:56,
2025-09-08T01:54:05,667                    from ./base/sbml/packages/layout/sbml/Layout.cpp:37:
2025-09-08T01:54:05,667   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T01:54:05,667     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T01:54:05,667         |                            ^~~~~~~~
2025-09-08T01:54:05,671   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:05,672     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:05,672         |                             ^~~~~~~~
2025-09-08T01:54:05,672   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T01:54:05,672     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T01:54:05,672         |                          ^~~~~~~~
2025-09-08T01:54:05,715   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2025-09-08T01:54:05,716   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:54:05,716     453 |   if (&(name) == NULL)
2025-09-08T01:54:05,716         |               ^
2025-09-08T01:54:05,716   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2025-09-08T01:54:05,716     448 | int Layout::setName (const std::string& name)
2025-09-08T01:54:05,716         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:54:06,420   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:54:06,420     453 |   if (&(name) == NULL)
2025-09-08T01:54:06,420         |   ^~
2025-09-08T01:54:18,095   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:54:18,096                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:54:18,096                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:54:18,096                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:54:18,096                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:54:18,096                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:54:18,096                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:54:18,096                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2025-09-08T01:54:18,096                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2025-09-08T01:54:18,097   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:54:18,097      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:54:18,097         |                           ^~~~~~~~~~~~~~
2025-09-08T01:54:18,097   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:54:18,097                    from ./base//sbml/packages/layout/sbml/LineSegment.h:51:
2025-09-08T01:54:18,097   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:54:18,097     117 |     struct unary_function
2025-09-08T01:54:18,097         |            ^~~~~~~~~~~~~~
2025-09-08T01:54:23,927   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:54:23,927                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:54:23,927                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:54:23,927                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:54:23,927                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:54:23,927                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:54:23,927                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:54:23,928                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2025-09-08T01:54:23,928   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:54:23,928      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:54:23,928         |                           ^~~~~~~~~~~~~~
2025-09-08T01:54:23,928   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:54:23,928                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T01:54:23,928                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T01:54:23,928                    from /usr/include/c++/14/ios:44,
2025-09-08T01:54:23,928                    from /usr/include/c++/14/istream:40,
2025-09-08T01:54:23,929                    from /usr/include/c++/14/sstream:40,
2025-09-08T01:54:23,929                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2025-09-08T01:54:23,929   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:54:23,929     117 |     struct unary_function
2025-09-08T01:54:23,929         |            ^~~~~~~~~~~~~~
2025-09-08T01:54:29,872   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:60,
2025-09-08T01:54:29,873                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2025-09-08T01:54:29,873   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:54:29,873      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:54:29,873         |                           ^~~~~~~~~~~~~~
2025-09-08T01:54:29,873   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:54:29,873                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:58:
2025-09-08T01:54:29,873   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:54:29,873     117 |     struct unary_function
2025-09-08T01:54:29,873         |            ^~~~~~~~~~~~~~
2025-09-08T01:54:30,406   In file included from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:54,
2025-09-08T01:54:30,406                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T01:54:30,406   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:30,407     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:30,407         |                             ^~~~~~~~
2025-09-08T01:54:30,407   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:54:30,407     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:54:30,407         |                                   ^~~~~~~~
2025-09-08T01:54:30,411   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:30,411     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:30,411         |                             ^~~~~~~~
2025-09-08T01:54:30,412   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:54:30,412     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:54:30,412         |                           ^~~~~~~~
2025-09-08T01:54:30,414   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:30,415     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:30,415         |                             ^~~~~~~~
2025-09-08T01:54:30,415   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:54:30,415                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:36:
2025-09-08T01:54:30,415   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:54:30,415     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:54:30,415         |                              ^~~~~~~~
2025-09-08T01:54:30,417   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:30,417     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:30,417         |                             ^~~~~~~~
2025-09-08T01:54:30,417   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:54:30,417   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:54:30,417     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:54:30,418         |                          ^~~~~~~~
2025-09-08T01:54:30,420   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:30,420     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:30,420         |                             ^~~~~~~~
2025-09-08T01:54:30,420   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:54:30,420   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:54:30,420     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:54:30,420         |                      ^~~~~~~~
2025-09-08T01:54:37,326   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:54:37,327                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:54:37,327                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:54:37,327                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:54:37,327                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:54:37,327                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:54:37,327                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:54:37,327                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T01:54:37,327                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T01:54:37,327                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:54,
2025-09-08T01:54:37,327                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2025-09-08T01:54:37,328   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:54:37,328      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:54:37,328         |                           ^~~~~~~~~~~~~~
2025-09-08T01:54:37,328   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:54:37,328                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:52:
2025-09-08T01:54:37,328   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:54:37,328     117 |     struct unary_function
2025-09-08T01:54:37,328         |            ^~~~~~~~~~~~~~
2025-09-08T01:54:37,638   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:37,638     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:37,639         |                             ^~~~~~~~
2025-09-08T01:54:37,639   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T01:54:37,639     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T01:54:37,639         |                            ^~~~~~~~
2025-09-08T01:54:37,644   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:37,644     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:37,644         |                             ^~~~~~~~
2025-09-08T01:54:37,644   In file included from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:31:
2025-09-08T01:54:37,644   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T01:54:37,644     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T01:54:37,644         |                          ^~~~~~~~
2025-09-08T01:54:44,202   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:54:44,202                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:54:44,202                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:54:44,202                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:54:44,202                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:54:44,202                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:54:44,202                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:54:44,202                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T01:54:44,202                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T01:54:44,203                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49,
2025-09-08T01:54:44,203                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2025-09-08T01:54:44,203   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:54:44,203      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:54:44,203         |                           ^~~~~~~~~~~~~~
2025-09-08T01:54:44,204   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:54:44,204                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:48:
2025-09-08T01:54:44,204   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:54:44,204     117 |     struct unary_function
2025-09-08T01:54:44,204         |            ^~~~~~~~~~~~~~
2025-09-08T01:54:44,509   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:44,509     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:44,509         |                             ^~~~~~~~
2025-09-08T01:54:44,509   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:54:44,509     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:54:44,510         |                          ^~~~~~~~
2025-09-08T01:54:44,512   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:44,512     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:44,512         |                             ^~~~~~~~
2025-09-08T01:54:44,513   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:54:44,513                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:31:
2025-09-08T01:54:44,513   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:54:44,513     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:54:44,513         |                              ^~~~~~~~
2025-09-08T01:54:44,522   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:44,523     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:44,523         |                             ^~~~~~~~
2025-09-08T01:54:44,523   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:54:44,523                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:54:44,523   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:54:44,523     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:54:44,523         |                                   ^~~~~~~~
2025-09-08T01:54:44,528   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:44,529     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:44,529         |                             ^~~~~~~~
2025-09-08T01:54:44,529   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:54:44,529     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:54:44,529         |                           ^~~~~~~~
2025-09-08T01:54:44,532   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:44,533     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:44,533         |                             ^~~~~~~~
2025-09-08T01:54:44,533   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:54:44,533   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:54:44,533     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:54:44,533         |                      ^~~~~~~~
2025-09-08T01:54:49,763   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:54:49,763                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:54:49,763                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:54:49,763                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:54:49,763                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:54:49,763                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:54:49,763                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:54:49,764                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T01:54:49,764                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T01:54:49,764                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:54,
2025-09-08T01:54:49,764                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2025-09-08T01:54:49,764   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:54:49,764      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:54:49,764         |                           ^~~~~~~~~~~~~~
2025-09-08T01:54:49,764   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:54:49,764                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:52:
2025-09-08T01:54:49,765   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:54:49,765     117 |     struct unary_function
2025-09-08T01:54:49,765         |            ^~~~~~~~~~~~~~
2025-09-08T01:54:50,081   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:50,081     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:50,081         |                             ^~~~~~~~
2025-09-08T01:54:50,081   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:54:50,081     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:54:50,081         |                                   ^~~~~~~~
2025-09-08T01:54:50,084   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:50,084     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:50,084         |                             ^~~~~~~~
2025-09-08T01:54:50,084   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:54:50,084                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:31:
2025-09-08T01:54:50,084   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:54:50,084     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:54:50,084         |                              ^~~~~~~~
2025-09-08T01:54:50,086   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:50,086     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:50,086         |                             ^~~~~~~~
2025-09-08T01:54:50,087   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:54:50,087   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:54:50,087     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:54:50,087         |                          ^~~~~~~~
2025-09-08T01:54:50,091   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:50,091     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:50,091         |                             ^~~~~~~~
2025-09-08T01:54:50,091   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:54:50,091   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:54:50,091     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:54:50,092         |                           ^~~~~~~~
2025-09-08T01:54:50,094   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:50,094     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:50,094         |                             ^~~~~~~~
2025-09-08T01:54:50,094   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:54:50,095   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:54:50,095     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:54:50,095         |                      ^~~~~~~~
2025-09-08T01:54:56,948   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:54:56,948                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:54:56,948                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:54:56,948                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:54:56,948                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:54:56,948                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:54:56,949                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:54:56,949                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T01:54:56,949                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T01:54:56,949                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2025-09-08T01:54:56,949                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2025-09-08T01:54:56,949   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:54:56,949      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:54:56,949         |                           ^~~~~~~~~~~~~~
2025-09-08T01:54:56,949   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:54:56,950                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2025-09-08T01:54:56,950   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:54:56,950     117 |     struct unary_function
2025-09-08T01:54:56,950         |            ^~~~~~~~~~~~~~
2025-09-08T01:54:57,254   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:57,254     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:57,254         |                             ^~~~~~~~
2025-09-08T01:54:57,254   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:54:57,254     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:54:57,254         |                      ^~~~~~~~
2025-09-08T01:54:57,256   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:57,256     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:57,257         |                             ^~~~~~~~
2025-09-08T01:54:57,257   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:54:57,257                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:33:
2025-09-08T01:54:57,257   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:54:57,257     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:54:57,257         |                              ^~~~~~~~
2025-09-08T01:54:57,259   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:57,259     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:57,259         |                             ^~~~~~~~
2025-09-08T01:54:57,259   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:54:57,259   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:54:57,260     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:54:57,260         |                          ^~~~~~~~
2025-09-08T01:54:57,268   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:57,268     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:57,268         |                             ^~~~~~~~
2025-09-08T01:54:57,268   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:54:57,268                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:54:57,268   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:54:57,269     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:54:57,269         |                                   ^~~~~~~~
2025-09-08T01:54:57,273   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:54:57,273     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:54:57,273         |                             ^~~~~~~~
2025-09-08T01:54:57,273   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:54:57,273     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:54:57,274         |                           ^~~~~~~~
2025-09-08T01:55:03,265   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:55:03,265                    from ./base//sbml/Model.h:446,
2025-09-08T01:55:03,265                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2025-09-08T01:55:03,265   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:03,265      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:03,266         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:03,266   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:03,266                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:55:03,266                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T01:55:03,267                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2025-09-08T01:55:03,267   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:03,267     117 |     struct unary_function
2025-09-08T01:55:03,267         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:03,599   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:55:03,599                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:55:03,599                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:45:
2025-09-08T01:55:03,599   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:03,600     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:03,600         |                             ^~~~~~~~
2025-09-08T01:55:03,600   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:55:03,600     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:55:03,600         |                              ^~~~~~~~
2025-09-08T01:55:03,602   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:03,602     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:03,602         |                             ^~~~~~~~
2025-09-08T01:55:03,602   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:55:03,602   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:55:03,602     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:55:03,602         |                          ^~~~~~~~
2025-09-08T01:55:03,610   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:03,611     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:03,611         |                             ^~~~~~~~
2025-09-08T01:55:03,611   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:55:03,611                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:55:03,611   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:55:03,611     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:55:03,611         |                                   ^~~~~~~~
2025-09-08T01:55:03,615   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:03,616     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:03,616         |                             ^~~~~~~~
2025-09-08T01:55:03,616   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:55:03,616     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:55:03,616         |                           ^~~~~~~~
2025-09-08T01:55:03,619   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:03,619     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:03,619         |                             ^~~~~~~~
2025-09-08T01:55:03,619   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:55:03,619   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:55:03,619     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:55:03,619         |                      ^~~~~~~~
2025-09-08T01:55:07,743   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:55:07,743                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:55:07,743                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:55:07,743                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:55:07,743                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:55:07,743                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T01:55:07,744                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T01:55:07,744                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T01:55:07,744                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T01:55:07,744                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T01:55:07,744                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2025-09-08T01:55:07,744   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:07,744      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:07,744         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:07,745   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:07,745                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T01:55:07,745                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T01:55:07,745                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T01:55:07,745                    from ./base//sbml/SBase.h:145,
2025-09-08T01:55:07,745                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T01:55:07,746   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:07,746     117 |     struct unary_function
2025-09-08T01:55:07,746         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:11,487   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:55:11,488                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:55:11,488                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:55:11,488                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2025-09-08T01:55:11,488                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2025-09-08T01:55:11,488   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:11,488      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:11,488         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:11,488   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:11,489                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2025-09-08T01:55:11,489                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2025-09-08T01:55:11,489                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2025-09-08T01:55:11,489   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:11,489     117 |     struct unary_function
2025-09-08T01:55:11,489         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:11,999   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:55:12,000                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:55:12,000                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T01:55:12,000                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T01:55:12,000                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T01:55:12,000   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:12,000     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:12,000         |                             ^~~~~~~~
2025-09-08T01:55:12,000   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:55:12,001     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:55:12,001         |                              ^~~~~~~~
2025-09-08T01:55:12,002   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:12,002     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:12,002         |                             ^~~~~~~~
2025-09-08T01:55:12,002   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:55:12,003   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:55:12,003     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:55:12,003         |                          ^~~~~~~~
2025-09-08T01:55:12,011   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:12,011     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:12,011         |                             ^~~~~~~~
2025-09-08T01:55:12,011   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:55:12,012                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:55:12,012   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:55:12,012     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:55:12,012         |                                   ^~~~~~~~
2025-09-08T01:55:12,016   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:12,016     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:12,016         |                             ^~~~~~~~
2025-09-08T01:55:12,016   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:55:12,017     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:55:12,017         |                           ^~~~~~~~
2025-09-08T01:55:12,019   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:12,019     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:12,019         |                             ^~~~~~~~
2025-09-08T01:55:12,020   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:55:12,020   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:55:12,020     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:55:12,020         |                      ^~~~~~~~
2025-09-08T01:55:12,040   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T01:55:12,040                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T01:55:12,040   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:12,040     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T01:55:12,040         |                        ^~~~~~~~
2025-09-08T01:55:12,041   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T01:55:12,041   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T01:55:12,041     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T01:55:12,041         |                        ^~~~~~~~
2025-09-08T01:55:12,043   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:12,044     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:12,044         |                             ^~~~~~~~
2025-09-08T01:55:12,044   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T01:55:12,044   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T01:55:12,044     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T01:55:12,044         |                            ^~~~~~~~
2025-09-08T01:55:12,049   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:12,049     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:12,049         |                             ^~~~~~~~
2025-09-08T01:55:12,049   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T01:55:12,049   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T01:55:12,049     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T01:55:12,049         |                          ^~~~~~~~
2025-09-08T01:55:24,194   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:55:24,195                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:55:24,195                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:55:24,195                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2025-09-08T01:55:24,195                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2025-09-08T01:55:24,195   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:24,195      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:24,195         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:24,195   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:24,195                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2025-09-08T01:55:24,196                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2025-09-08T01:55:24,196                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2025-09-08T01:55:24,196   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:24,196     117 |     struct unary_function
2025-09-08T01:55:24,196         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:27,661   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:55:27,661                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:55:27,661                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:55:27,661                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2025-09-08T01:55:27,661   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:27,661      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:27,661         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:27,661   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:27,662                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:55:27,662   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:27,662     117 |     struct unary_function
2025-09-08T01:55:27,662         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:28,168   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:55:28,168                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:55:28,169                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T01:55:28,169                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T01:55:28,169                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:35:
2025-09-08T01:55:28,169   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:28,169     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:28,169         |                             ^~~~~~~~
2025-09-08T01:55:28,169   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:55:28,169     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:55:28,169         |                              ^~~~~~~~
2025-09-08T01:55:28,171   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:28,171     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:28,171         |                             ^~~~~~~~
2025-09-08T01:55:28,171   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:55:28,171   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:55:28,171     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:55:28,172         |                          ^~~~~~~~
2025-09-08T01:55:28,180   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:28,180     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:28,180         |                             ^~~~~~~~
2025-09-08T01:55:28,180   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:55:28,180                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:55:28,180   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:55:28,181     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:55:28,181         |                                   ^~~~~~~~
2025-09-08T01:55:28,185   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:28,185     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:28,185         |                             ^~~~~~~~
2025-09-08T01:55:28,185   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:55:28,185     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:55:28,185         |                           ^~~~~~~~
2025-09-08T01:55:28,188   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:28,188     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:28,188         |                             ^~~~~~~~
2025-09-08T01:55:28,188   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:55:28,189   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:55:28,189     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:55:28,189         |                      ^~~~~~~~
2025-09-08T01:55:28,209   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T01:55:28,209                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T01:55:28,209   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:28,209     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T01:55:28,209         |                        ^~~~~~~~
2025-09-08T01:55:28,210   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T01:55:28,210   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T01:55:28,210     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T01:55:28,210         |                        ^~~~~~~~
2025-09-08T01:55:28,212   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:28,213     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:28,213         |                             ^~~~~~~~
2025-09-08T01:55:28,213   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T01:55:28,213   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T01:55:28,213     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T01:55:28,213         |                            ^~~~~~~~
2025-09-08T01:55:28,218   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:28,218     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:28,218         |                             ^~~~~~~~
2025-09-08T01:55:28,218   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T01:55:28,218   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T01:55:28,218     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T01:55:28,219         |                          ^~~~~~~~
2025-09-08T01:55:28,220   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:28,220      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T01:55:28,220         |                       ^~~~~~~~~~~~~~
2025-09-08T01:55:28,220   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:28,220     117 |     struct unary_function
2025-09-08T01:55:28,221         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:28,467   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T01:55:28,467   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T01:55:28,468     419 |     if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T01:55:28,468         |            ^
2025-09-08T01:55:28,468   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:35: note: ‘x’ declared here
2025-09-08T01:55:28,468     417 |   virtual bool visit(const SBase &x)
2025-09-08T01:55:28,468         |                      ~~~~~~~~~~~~~^
2025-09-08T01:55:28,492   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T01:55:28,492   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T01:55:28,492     550 |   if (&d == NULL) return 0;
2025-09-08T01:55:28,492         |          ^
2025-09-08T01:55:28,492   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2025-09-08T01:55:28,492     548 | LayoutValidator::validate (const SBMLDocument& d)
2025-09-08T01:55:28,492         |                            ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T01:55:28,494   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T01:55:28,494   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T01:55:28,494     592 |   if (&filename == NULL) return 0;
2025-09-08T01:55:28,494         |                 ^
2025-09-08T01:55:28,495   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2025-09-08T01:55:28,495     590 | LayoutValidator::validate (const std::string& filename)
2025-09-08T01:55:28,495         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:55:29,444   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T01:55:29,444   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:55:29,444     550 |   if (&d == NULL) return 0;
2025-09-08T01:55:29,445         |   ^~
2025-09-08T01:55:29,468   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T01:55:29,468   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:55:29,468     419 |     if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T01:55:29,469         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:55:29,487   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T01:55:29,487   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:55:29,487     592 |   if (&filename == NULL) return 0;
2025-09-08T01:55:29,487         |   ^~
2025-09-08T01:55:34,350   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:55:34,350                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:55:34,350                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:55:34,350                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2025-09-08T01:55:34,350   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:34,350      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:34,350         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:34,351   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:34,351                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:55:34,351   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:34,351     117 |     struct unary_function
2025-09-08T01:55:34,351         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:34,859   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:55:34,859                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:55:34,859                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T01:55:34,859                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T01:55:34,860                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T01:55:34,860   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:34,860     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:34,860         |                             ^~~~~~~~
2025-09-08T01:55:34,860   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:55:34,860     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:55:34,860         |                              ^~~~~~~~
2025-09-08T01:55:34,870   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:34,870     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:34,870         |                             ^~~~~~~~
2025-09-08T01:55:34,870   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:55:34,871   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:55:34,871     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:55:34,871         |                          ^~~~~~~~
2025-09-08T01:55:34,871   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:34,871     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:34,871         |                             ^~~~~~~~
2025-09-08T01:55:34,871   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:55:34,871                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:55:34,871   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:55:34,872     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:55:34,872         |                                   ^~~~~~~~
2025-09-08T01:55:34,880   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:34,880     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:34,880         |                             ^~~~~~~~
2025-09-08T01:55:34,880   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:55:34,881     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:55:34,881         |                           ^~~~~~~~
2025-09-08T01:55:34,881   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:34,881     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:34,881         |                             ^~~~~~~~
2025-09-08T01:55:34,881   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:55:34,881   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:55:34,881     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:55:34,881         |                      ^~~~~~~~
2025-09-08T01:55:34,900   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T01:55:34,900                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T01:55:34,900   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:34,900     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T01:55:34,901         |                        ^~~~~~~~
2025-09-08T01:55:34,901   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T01:55:34,901   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T01:55:34,901     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T01:55:34,901         |                        ^~~~~~~~
2025-09-08T01:55:34,906   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:34,906     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:34,906         |                             ^~~~~~~~
2025-09-08T01:55:34,906   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T01:55:34,906   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T01:55:34,906     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T01:55:34,906         |                            ^~~~~~~~
2025-09-08T01:55:34,910   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:34,910     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:34,910         |                             ^~~~~~~~
2025-09-08T01:55:34,910   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T01:55:34,911   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T01:55:34,911     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T01:55:34,911         |                          ^~~~~~~~
2025-09-08T01:55:38,080   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:55:38,080                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:55:38,080                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:55:38,080                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2025-09-08T01:55:38,080   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:38,080      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:38,081         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:38,090   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:38,090                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:55:38,090   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:38,091     117 |     struct unary_function
2025-09-08T01:55:38,091         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:41,582   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:55:41,582                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:55:41,583                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:55:41,583                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2025-09-08T01:55:41,583                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2025-09-08T01:55:41,583   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:41,583      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:41,583         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:41,583   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:41,583                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2025-09-08T01:55:41,583   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:41,584     117 |     struct unary_function
2025-09-08T01:55:41,584         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:42,021   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T01:55:42,021                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T01:55:42,021                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T01:55:42,021                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:36:
2025-09-08T01:55:42,021   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:42,021     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:42,022         |                             ^~~~~~~~
2025-09-08T01:55:42,022   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T01:55:42,022     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T01:55:42,022         |                              ^~~~~~~~
2025-09-08T01:55:42,023   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:42,024     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:42,024         |                             ^~~~~~~~
2025-09-08T01:55:42,024   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T01:55:42,024   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T01:55:42,024     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T01:55:42,024         |                          ^~~~~~~~
2025-09-08T01:55:42,032   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:42,033     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:42,033         |                             ^~~~~~~~
2025-09-08T01:55:42,033   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T01:55:42,033                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T01:55:42,033   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:118:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T01:55:42,033     118 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T01:55:42,033         |                                   ^~~~~~~~
2025-09-08T01:55:42,037   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:42,038     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:42,038         |                             ^~~~~~~~
2025-09-08T01:55:42,038   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T01:55:42,038     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T01:55:42,038         |                           ^~~~~~~~
2025-09-08T01:55:42,041   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:42,041     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:42,041         |                             ^~~~~~~~
2025-09-08T01:55:42,041   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T01:55:42,041   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T01:55:42,041     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T01:55:42,042         |                      ^~~~~~~~
2025-09-08T01:55:42,058   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:42,058     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:42,058         |                             ^~~~~~~~
2025-09-08T01:55:42,058   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:56,
2025-09-08T01:55:42,059                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:38:
2025-09-08T01:55:42,059   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T01:55:42,059     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T01:55:42,059         |                            ^~~~~~~~
2025-09-08T01:55:42,063   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T01:55:42,064     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T01:55:42,064         |                             ^~~~~~~~
2025-09-08T01:55:42,064   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T01:55:42,064     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T01:55:42,064         |                          ^~~~~~~~
2025-09-08T01:55:46,695   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:55:46,695                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:55:46,695                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:55:46,695                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T01:55:46,695                    from ./base//sbml/extension/SBMLExtension.h:121,
2025-09-08T01:55:46,695                    from ./base//sbml/extension/SBMLExtensionRegister.h:55,
2025-09-08T01:55:46,696                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2025-09-08T01:55:46,696   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:46,696      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:46,696         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:46,696   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:46,696                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:55:46,696                    from ./base//sbml/SBMLError.h:457,
2025-09-08T01:55:46,696                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T01:55:46,696   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:46,697     117 |     struct unary_function
2025-09-08T01:55:46,697         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:51,449   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:55:51,449                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:55:51,449                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:55:51,449                    from ./base//sbml/extension/SBasePlugin.h:62,
2025-09-08T01:55:51,449                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:54,
2025-09-08T01:55:51,449                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2025-09-08T01:55:51,450   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:51,450      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:51,450         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:51,450   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:51,450                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:55:51,450                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:55:51,450                    from ./base//sbml/extension/SBasePlugin.h:60:
2025-09-08T01:55:51,450   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:51,450     117 |     struct unary_function
2025-09-08T01:55:51,451         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:56,127   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:55:56,127                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:55:56,127                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:55:56,128                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2025-09-08T01:55:56,128                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:58,
2025-09-08T01:55:56,128                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2025-09-08T01:55:56,128   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:56,128      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:56,128         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:56,128   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:56,129                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T01:55:56,129                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T01:55:56,129                    from ./base//sbml/extension/SBMLDocumentPlugin.h:57:
2025-09-08T01:55:56,129   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:56,129     117 |     struct unary_function
2025-09-08T01:55:56,129         |            ^~~~~~~~~~~~~~
2025-09-08T01:55:59,813   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2025-09-08T01:55:59,813                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2025-09-08T01:55:59,813   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:55:59,813      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:55:59,813         |                           ^~~~~~~~~~~~~~
2025-09-08T01:55:59,814   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:55:59,814                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2025-09-08T01:55:59,814   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:55:59,814     117 |     struct unary_function
2025-09-08T01:55:59,814         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:00,345   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T01:56:00,345   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:56:00,345      81 |   if (&orig == NULL)
2025-09-08T01:56:00,345         |             ^
2025-09-08T01:56:00,346   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2025-09-08T01:56:00,346      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2025-09-08T01:56:00,346         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:00,346   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T01:56:00,347   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:56:00,347      99 |   if (&rhs == NULL)
2025-09-08T01:56:00,347         |            ^
2025-09-08T01:56:00,347   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2025-09-08T01:56:00,347      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2025-09-08T01:56:00,347         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:56:00,827   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T01:56:00,827   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:00,827      81 |   if (&orig == NULL)
2025-09-08T01:56:00,827         |   ^~
2025-09-08T01:56:00,827   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T01:56:00,828   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:00,828      99 |   if (&rhs == NULL)
2025-09-08T01:56:00,828         |   ^~
2025-09-08T01:56:04,756   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:58,
2025-09-08T01:56:04,756                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2025-09-08T01:56:04,756   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:04,756      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:56:04,756         |                           ^~~~~~~~~~~~~~
2025-09-08T01:56:04,756   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:56:04,756                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:54:
2025-09-08T01:56:04,757   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:04,757     117 |     struct unary_function
2025-09-08T01:56:04,757         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:05,291   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T01:56:05,291   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:56:05,292      88 |   if (&orig == NULL)
2025-09-08T01:56:05,292         |             ^
2025-09-08T01:56:05,292   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2025-09-08T01:56:05,292      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2025-09-08T01:56:05,292         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:05,293   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T01:56:05,293   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:56:05,293     114 |   if (&rhs == NULL)
2025-09-08T01:56:05,293         |            ^
2025-09-08T01:56:05,294   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2025-09-08T01:56:05,294     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2025-09-08T01:56:05,294         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:56:05,319   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T01:56:05,319   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:657:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:56:05,319     657 |   if (&orig == NULL)
2025-09-08T01:56:05,319         |             ^
2025-09-08T01:56:05,319   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:654:70: note: ‘orig’ declared here
2025-09-08T01:56:05,319     654 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2025-09-08T01:56:05,320         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:05,320   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T01:56:05,320   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:679:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:56:05,320     679 |   if (&rhs == NULL)
2025-09-08T01:56:05,321         |            ^
2025-09-08T01:56:05,321   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:677:59: note: ‘rhs’ declared here
2025-09-08T01:56:05,321     677 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2025-09-08T01:56:05,321         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:56:05,869   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T01:56:05,869   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:05,870      88 |   if (&orig == NULL)
2025-09-08T01:56:05,870         |   ^~
2025-09-08T01:56:05,870   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T01:56:05,870   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:05,870     114 |   if (&rhs == NULL)
2025-09-08T01:56:05,870         |   ^~
2025-09-08T01:56:05,870   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T01:56:05,871   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:679:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:05,871     679 |   if (&rhs == NULL)
2025-09-08T01:56:05,871         |   ^~
2025-09-08T01:56:05,882   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T01:56:05,882   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:657:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:05,882     657 |   if (&orig == NULL)
2025-09-08T01:56:05,882         |   ^~
2025-09-08T01:56:11,343   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2025-09-08T01:56:11,343                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2025-09-08T01:56:11,344   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:11,344      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:56:11,344         |                           ^~~~~~~~~~~~~~
2025-09-08T01:56:11,344   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:56:11,344                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2025-09-08T01:56:11,344   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:11,344     117 |     struct unary_function
2025-09-08T01:56:11,344         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:11,885   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T01:56:11,886   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:56:11,886      91 |   if (&orig == NULL)
2025-09-08T01:56:11,886         |             ^
2025-09-08T01:56:11,886   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2025-09-08T01:56:11,886      88 | Input::Input (const Input& orig)
2025-09-08T01:56:11,886         |               ~~~~~~~~~~~~~^~~~
2025-09-08T01:56:11,887   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T01:56:11,888   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:56:11,888     114 |   if (&rhs == NULL)
2025-09-08T01:56:11,888         |            ^
2025-09-08T01:56:11,888   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2025-09-08T01:56:11,888     112 | Input::operator=(const Input& rhs)
2025-09-08T01:56:11,888         |                  ~~~~~~~~~~~~~^~~
2025-09-08T01:56:11,892   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T01:56:11,892   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T01:56:11,892     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T01:56:11,893         |                             ^
2025-09-08T01:56:11,893   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2025-09-08T01:56:11,893     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T01:56:11,893         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T01:56:11,893   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T01:56:11,894   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:56:11,894     328 |   if (&(name) == NULL)
2025-09-08T01:56:11,894         |               ^
2025-09-08T01:56:11,894   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2025-09-08T01:56:11,894     326 | Input::setName(const std::string& name)
2025-09-08T01:56:11,894         |                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:11,934   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2025-09-08T01:56:11,934   ./base/sbml/packages/qual/sbml/Input.cpp:972:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:11,934     972 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T01:56:11,934         |                             ^~~~~~~~~~~~~~
2025-09-08T01:56:11,934   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:11,934     117 |     struct unary_function
2025-09-08T01:56:11,934         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:12,475   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T01:56:12,475   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:12,475     328 |   if (&(name) == NULL)
2025-09-08T01:56:12,475         |   ^~
2025-09-08T01:56:12,492   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T01:56:12,492   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:12,493      91 |   if (&orig == NULL)
2025-09-08T01:56:12,493         |   ^~
2025-09-08T01:56:12,493   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T01:56:12,493   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:12,493     114 |   if (&rhs == NULL)
2025-09-08T01:56:12,493         |   ^~
2025-09-08T01:56:12,493   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T01:56:12,493   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:12,493     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T01:56:12,493         |   ^~
2025-09-08T01:56:20,067   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2025-09-08T01:56:20,068                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2025-09-08T01:56:20,068   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:20,068      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:56:20,068         |                           ^~~~~~~~~~~~~~
2025-09-08T01:56:20,068   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:56:20,068                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2025-09-08T01:56:20,068   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:20,068     117 |     struct unary_function
2025-09-08T01:56:20,068         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:20,605   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T01:56:20,605   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:56:20,605      89 |   if (&orig == NULL)
2025-09-08T01:56:20,605         |             ^
2025-09-08T01:56:20,605   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2025-09-08T01:56:20,605      86 | Output::Output (const Output& orig)
2025-09-08T01:56:20,605         |                 ~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:20,606   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T01:56:20,607   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:56:20,607     111 |   if (&rhs == NULL)
2025-09-08T01:56:20,607         |            ^
2025-09-08T01:56:20,607   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2025-09-08T01:56:20,607     109 | Output::operator=(const Output& rhs)
2025-09-08T01:56:20,607         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T01:56:20,610   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T01:56:20,611   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T01:56:20,611     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T01:56:20,611         |                             ^
2025-09-08T01:56:20,611   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2025-09-08T01:56:20,611     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T01:56:20,611         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T01:56:20,612   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T01:56:20,612   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:56:20,612     304 |   if (&(name) == NULL)
2025-09-08T01:56:20,612         |               ^
2025-09-08T01:56:20,612   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2025-09-08T01:56:20,612     302 | Output::setName(const std::string& name)
2025-09-08T01:56:20,612         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:20,648   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2025-09-08T01:56:20,648   ./base/sbml/packages/qual/sbml/Output.cpp:884:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:20,648     884 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T01:56:20,648         |                             ^~~~~~~~~~~~~~
2025-09-08T01:56:20,648   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:20,648     117 |     struct unary_function
2025-09-08T01:56:20,649         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:21,183   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T01:56:21,183   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:21,183     304 |   if (&(name) == NULL)
2025-09-08T01:56:21,183         |   ^~
2025-09-08T01:56:21,199   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T01:56:21,199   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:21,199      89 |   if (&orig == NULL)
2025-09-08T01:56:21,200         |   ^~
2025-09-08T01:56:21,200   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T01:56:21,200   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:21,200     111 |   if (&rhs == NULL)
2025-09-08T01:56:21,200         |   ^~
2025-09-08T01:56:21,200   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T01:56:21,200   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:21,200     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T01:56:21,200         |   ^~
2025-09-08T01:56:28,193   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:69,
2025-09-08T01:56:28,194                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2025-09-08T01:56:28,194   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:28,194      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:56:28,194         |                           ^~~~~~~~~~~~~~
2025-09-08T01:56:28,195   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:56:28,195                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:65:
2025-09-08T01:56:28,195   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:28,195     117 |     struct unary_function
2025-09-08T01:56:28,195         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:28,731   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T01:56:28,731   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:56:28,731      95 |   if (&orig == NULL)
2025-09-08T01:56:28,731         |             ^
2025-09-08T01:56:28,731   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2025-09-08T01:56:28,731      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2025-09-08T01:56:28,731         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:28,734   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T01:56:28,734   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:56:28,734     120 |   if (&rhs == NULL)
2025-09-08T01:56:28,734         |            ^
2025-09-08T01:56:28,734   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2025-09-08T01:56:28,734     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2025-09-08T01:56:28,734         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:56:28,738   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T01:56:28,738   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2025-09-08T01:56:28,738     295 |   if (&(compartment) == NULL)
2025-09-08T01:56:28,739         |                      ^
2025-09-08T01:56:28,739   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2025-09-08T01:56:28,739     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2025-09-08T01:56:28,739         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T01:56:28,740   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2025-09-08T01:56:28,740   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:56:28,740     329 |   if (&(name) == NULL)
2025-09-08T01:56:28,741         |               ^
2025-09-08T01:56:28,741   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2025-09-08T01:56:28,741     327 | QualitativeSpecies::setName(const std::string& name)
2025-09-08T01:56:28,741         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:29,309   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:29,309     329 |   if (&(name) == NULL)
2025-09-08T01:56:29,309         |   ^~
2025-09-08T01:56:29,324   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T01:56:29,325   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:29,325      95 |   if (&orig == NULL)
2025-09-08T01:56:29,325         |   ^~
2025-09-08T01:56:29,326   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T01:56:29,326   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:29,326     120 |   if (&rhs == NULL)
2025-09-08T01:56:29,326         |   ^~
2025-09-08T01:56:29,327   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T01:56:29,327   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:29,327     295 |   if (&(compartment) == NULL)
2025-09-08T01:56:29,327         |   ^~
2025-09-08T01:56:36,359   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2025-09-08T01:56:36,359                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2025-09-08T01:56:36,359   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:36,359      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:56:36,359         |                           ^~~~~~~~~~~~~~
2025-09-08T01:56:36,359   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:56:36,360                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2025-09-08T01:56:36,360   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:36,360     117 |     struct unary_function
2025-09-08T01:56:36,360         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:36,912   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T01:56:36,912   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:56:36,912      94 |   if (&orig == NULL)
2025-09-08T01:56:36,912         |             ^
2025-09-08T01:56:36,913   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2025-09-08T01:56:36,913      91 | Transition::Transition (const Transition& orig)
2025-09-08T01:56:36,913         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:36,914   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T01:56:36,915   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:56:36,915     118 |   if (&rhs == NULL)
2025-09-08T01:56:36,915         |            ^
2025-09-08T01:56:36,915   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2025-09-08T01:56:36,915     116 | Transition::operator=(const Transition& rhs)
2025-09-08T01:56:36,915         |                       ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:56:36,921   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2025-09-08T01:56:36,922   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T01:56:36,922     257 |   if (&(name) == NULL)
2025-09-08T01:56:36,922         |               ^
2025-09-08T01:56:36,922   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2025-09-08T01:56:36,922     255 | Transition::setName(const std::string& name)
2025-09-08T01:56:36,922         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:56:37,484   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:37,484     257 |   if (&(name) == NULL)
2025-09-08T01:56:37,484         |   ^~
2025-09-08T01:56:37,500   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T01:56:37,500   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:37,500     118 |   if (&rhs == NULL)
2025-09-08T01:56:37,500         |   ^~
2025-09-08T01:56:37,515   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T01:56:37,515   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:37,515      94 |   if (&orig == NULL)
2025-09-08T01:56:37,515         |   ^~
2025-09-08T01:56:44,090   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:56:44,091                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:56:44,091                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:56:44,091                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2025-09-08T01:56:44,091                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2025-09-08T01:56:44,091   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:44,091      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:56:44,091         |                           ^~~~~~~~~~~~~~
2025-09-08T01:56:44,091   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:56:44,091                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2025-09-08T01:56:44,092                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2025-09-08T01:56:44,092                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2025-09-08T01:56:44,092   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:44,092     117 |     struct unary_function
2025-09-08T01:56:44,092         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:49,131   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:56:49,131                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:56:49,132                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:56:49,132                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2025-09-08T01:56:49,132                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2025-09-08T01:56:49,132   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:49,132      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:56:49,132         |                           ^~~~~~~~~~~~~~
2025-09-08T01:56:49,132   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:56:49,132                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2025-09-08T01:56:49,132                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2025-09-08T01:56:49,133                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2025-09-08T01:56:49,133   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:49,133     117 |     struct unary_function
2025-09-08T01:56:49,133         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:52,592   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:56:52,592                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:56:52,592                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:56:52,592                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2025-09-08T01:56:52,592                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2025-09-08T01:56:52,592   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:52,592      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:56:52,593         |                           ^~~~~~~~~~~~~~
2025-09-08T01:56:52,593   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:56:52,593                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2025-09-08T01:56:52,593                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2025-09-08T01:56:52,593                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2025-09-08T01:56:52,593   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:52,593     117 |     struct unary_function
2025-09-08T01:56:52,593         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:56,235   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:56:56,235                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:56:56,235                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:56:56,235                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2025-09-08T01:56:56,236   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:56,236      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:56:56,236         |                           ^~~~~~~~~~~~~~
2025-09-08T01:56:56,236   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:56:56,236                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:56:56,236   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:56,236     117 |     struct unary_function
2025-09-08T01:56:56,236         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:56,755   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:56:56,755      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T01:56:56,755         |                       ^~~~~~~~~~~~~~
2025-09-08T01:56:56,755   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:56:56,756     117 |     struct unary_function
2025-09-08T01:56:56,756         |            ^~~~~~~~~~~~~~
2025-09-08T01:56:56,903   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T01:56:56,904   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T01:56:56,904     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T01:56:56,904         |           ^
2025-09-08T01:56:56,904   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2025-09-08T01:56:56,904     313 |   virtual bool visit (const SBase &x)
2025-09-08T01:56:56,904         |                       ~~~~~~~~~~~~~^
2025-09-08T01:56:56,917   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T01:56:56,917   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T01:56:56,918     419 |   if (&d == NULL) return 0;
2025-09-08T01:56:56,918         |          ^
2025-09-08T01:56:56,918   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2025-09-08T01:56:56,918     417 | QualValidator::validate (const SBMLDocument& d)
2025-09-08T01:56:56,918         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T01:56:56,919   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T01:56:56,919   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T01:56:56,919     449 |   if (&filename == NULL) return 0;
2025-09-08T01:56:56,920         |                 ^
2025-09-08T01:56:56,920   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2025-09-08T01:56:56,920     447 | QualValidator::validate (const std::string& filename)
2025-09-08T01:56:56,920         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:56:57,661   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T01:56:57,661   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:57,662     419 |   if (&d == NULL) return 0;
2025-09-08T01:56:57,662         |   ^~
2025-09-08T01:56:57,674   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T01:56:57,674   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:57,674     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T01:56:57,675         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:56:57,687   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T01:56:57,687   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:56:57,687     449 |   if (&filename == NULL) return 0;
2025-09-08T01:56:57,687         |   ^~
2025-09-08T01:57:01,892   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:57:01,892                    from ./base//sbml/Model.h:446,
2025-09-08T01:57:01,892                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2025-09-08T01:57:01,892   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:01,892      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:01,893         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:01,893   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:01,893                    from ./base//sbml/Model.h:444:
2025-09-08T01:57:01,893   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:01,893     117 |     struct unary_function
2025-09-08T01:57:01,893         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:05,886   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:57:05,886                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:57:05,886                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:57:05,887                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2025-09-08T01:57:05,887                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2025-09-08T01:57:05,887   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:05,887      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:05,887         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:05,887   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:05,887                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2025-09-08T01:57:05,887   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:05,887     117 |     struct unary_function
2025-09-08T01:57:05,888         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:06,410   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T01:57:06,410   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T01:57:06,411      97 |   if (&(node) == NULL)
2025-09-08T01:57:06,411         |               ^
2025-09-08T01:57:06,411   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2025-09-08T01:57:06,411      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T01:57:06,411         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T01:57:06,835   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:57:06,836      97 |   if (&(node) == NULL)
2025-09-08T01:57:06,836         |   ^~
2025-09-08T01:57:10,011   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:57:10,011                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:57:10,011                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:57:10,011                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2025-09-08T01:57:10,011   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:10,012      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:10,012         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:10,012   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:10,012                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:57:10,012   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:10,012     117 |     struct unary_function
2025-09-08T01:57:10,012         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:13,608   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:57:13,608                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:57:13,608                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:57:13,608                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2025-09-08T01:57:13,608   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:13,608      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:13,609         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:13,609   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:13,609                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:57:13,609   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:13,609     117 |     struct unary_function
2025-09-08T01:57:13,609         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:17,012   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:57:17,012                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:57:17,012                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:57:17,012                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2025-09-08T01:57:17,013   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:17,013      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:17,013         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:17,013   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:17,013                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:57:17,013   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:17,013     117 |     struct unary_function
2025-09-08T01:57:17,013         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:20,658   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:57:20,658                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:57:20,659                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:57:20,659                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2025-09-08T01:57:20,659                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2025-09-08T01:57:20,659   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:20,659      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:20,659         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:20,659   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:20,659                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2025-09-08T01:57:20,659   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:20,660     117 |     struct unary_function
2025-09-08T01:57:20,660         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:25,635   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:57:25,635                    from ./base//sbml/Model.h:446,
2025-09-08T01:57:25,635                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2025-09-08T01:57:25,635   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:25,635      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:25,635         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:25,635   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:25,636                    from ./base//sbml/Model.h:444:
2025-09-08T01:57:25,636   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:25,636     117 |     struct unary_function
2025-09-08T01:57:25,636         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:29,504   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:57:29,504                    from ./base//sbml/Model.h:446,
2025-09-08T01:57:29,504                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2025-09-08T01:57:29,504   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:29,504      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:29,504         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:29,504   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:29,505                    from ./base//sbml/Model.h:444:
2025-09-08T01:57:29,505   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:29,505     117 |     struct unary_function
2025-09-08T01:57:29,505         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:33,365   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:57:33,365                    from ./base//sbml/Model.h:446,
2025-09-08T01:57:33,365                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2025-09-08T01:57:33,365   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:33,365      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:33,365         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:33,365   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:33,366                    from ./base//sbml/Model.h:444:
2025-09-08T01:57:33,366   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:33,366     117 |     struct unary_function
2025-09-08T01:57:33,366         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:33,689   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T01:57:33,689   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:57:33,689      74 |   if (&orig == NULL)
2025-09-08T01:57:33,689         |             ^
2025-09-08T01:57:33,689   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2025-09-08T01:57:33,689      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2025-09-08T01:57:33,689         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:57:33,691   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T01:57:33,692   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:57:33,692     138 |   if (&rhs == NULL)
2025-09-08T01:57:33,692         |            ^
2025-09-08T01:57:33,692   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2025-09-08T01:57:33,692     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2025-09-08T01:57:33,692         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:57:34,097   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T01:57:34,097   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:57:34,097      74 |   if (&orig == NULL)
2025-09-08T01:57:34,097         |   ^~
2025-09-08T01:57:34,098   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T01:57:34,098   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:57:34,098     138 |   if (&rhs == NULL)
2025-09-08T01:57:34,098         |   ^~
2025-09-08T01:57:37,055   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:57:37,055                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:57:37,055                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2025-09-08T01:57:37,055   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:37,055      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:37,055         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:37,056   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:37,056                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T01:57:37,056   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:37,056     117 |     struct unary_function
2025-09-08T01:57:37,056         |            ^~~~~~~~~~~~~~
2025-09-08T01:57:48,311   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T01:57:48,311   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2025-09-08T01:57:48,311      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T01:57:48,311         |                       ^
2025-09-08T01:57:48,312   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2025-09-08T01:57:48,312      48 | IdList::IdList(const std::string& commaSeparated)
2025-09-08T01:57:48,312         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T01:57:48,548   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T01:57:48,548   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:57:48,548      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T01:57:48,548         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T01:57:58,694   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:57:58,695                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:57:58,695                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2025-09-08T01:57:58,695   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:57:58,695      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:57:58,695         |                           ^~~~~~~~~~~~~~
2025-09-08T01:57:58,695   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:57:58,695                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T01:57:58,695   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:57:58,695     117 |     struct unary_function
2025-09-08T01:57:58,696         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:13,604   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:58:13,604                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:58:13,605                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2025-09-08T01:58:13,605   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:13,605      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:13,605         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:13,605   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:13,605                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T01:58:13,605   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:13,605     117 |     struct unary_function
2025-09-08T01:58:13,605         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:18,209   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:58:18,209                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:58:18,210                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2025-09-08T01:58:18,210   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:18,210      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:18,210         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:18,210   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:18,210                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T01:58:18,210   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:18,210     117 |     struct unary_function
2025-09-08T01:58:18,211         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:24,836   In file included from ./base//sbml/Rule.h:141,
2025-09-08T01:58:24,836                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T01:58:24,836                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2025-09-08T01:58:24,836                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2025-09-08T01:58:24,836   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:24,837      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:24,837         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:24,837   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:24,837                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T01:58:24,837                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2025-09-08T01:58:24,837                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2025-09-08T01:58:24,837   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:24,837     117 |     struct unary_function
2025-09-08T01:58:24,837         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:30,038   In file included from ./base//sbml/Rule.h:141,
2025-09-08T01:58:30,038                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T01:58:30,038                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2025-09-08T01:58:30,038                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2025-09-08T01:58:30,039   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:30,039      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:30,039         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:30,039   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:30,039                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T01:58:30,039                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2025-09-08T01:58:30,039                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2025-09-08T01:58:30,039   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:30,039     117 |     struct unary_function
2025-09-08T01:58:30,040         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:35,558   In file included from ./base//sbml/Rule.h:141,
2025-09-08T01:58:35,558                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T01:58:35,558                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2025-09-08T01:58:35,558                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2025-09-08T01:58:35,558   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:35,558      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:35,558         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:35,559   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:35,559                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T01:58:35,559                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2025-09-08T01:58:35,559                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2025-09-08T01:58:35,559   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:35,559     117 |     struct unary_function
2025-09-08T01:58:35,559         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:40,830   In file included from ./base//sbml/Rule.h:141,
2025-09-08T01:58:40,830                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T01:58:40,830                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2025-09-08T01:58:40,830                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2025-09-08T01:58:40,830   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:40,830      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:40,830         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:40,831   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:40,831                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T01:58:40,831                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2025-09-08T01:58:40,831                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2025-09-08T01:58:40,831   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:40,831     117 |     struct unary_function
2025-09-08T01:58:40,831         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:45,840   In file included from ./base//sbml/Rule.h:141,
2025-09-08T01:58:45,840                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T01:58:45,840                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2025-09-08T01:58:45,840                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2025-09-08T01:58:45,841   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:45,841      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:45,841         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:45,841   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:45,841                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T01:58:45,841                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2025-09-08T01:58:45,841                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2025-09-08T01:58:45,841   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:45,841     117 |     struct unary_function
2025-09-08T01:58:45,842         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:50,830   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:58:50,830                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:58:50,830                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:58:50,831                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2025-09-08T01:58:50,831                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2025-09-08T01:58:50,831   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:50,831      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:50,831         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:50,831   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:50,831                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T01:58:50,831                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2025-09-08T01:58:50,831                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2025-09-08T01:58:50,832   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:50,832     117 |     struct unary_function
2025-09-08T01:58:50,832         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:54,607   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:58:54,607                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:58:54,607                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2025-09-08T01:58:54,607   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:54,607      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:54,607         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:54,607   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:54,607                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T01:58:54,608   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:54,608     117 |     struct unary_function
2025-09-08T01:58:54,608         |            ^~~~~~~~~~~~~~
2025-09-08T01:58:58,123   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:58:58,123                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:58:58,124                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2025-09-08T01:58:58,124   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:58:58,124      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:58:58,124         |                           ^~~~~~~~~~~~~~
2025-09-08T01:58:58,124   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:58:58,124                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T01:58:58,124   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:58:58,124     117 |     struct unary_function
2025-09-08T01:58:58,124         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:02,249   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:59:02,249                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:59:02,249                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2025-09-08T01:59:02,249   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:02,250      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:59:02,250         |                           ^~~~~~~~~~~~~~
2025-09-08T01:59:02,250   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:59:02,250                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T01:59:02,250   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:02,250     117 |     struct unary_function
2025-09-08T01:59:02,250         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:05,966   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:59:05,966                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:59:05,966                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:59:05,966                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:59:05,966                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T01:59:05,966                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2025-09-08T01:59:05,966                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2025-09-08T01:59:05,967   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:05,967      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:59:05,967         |                           ^~~~~~~~~~~~~~
2025-09-08T01:59:05,967   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:59:05,967                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:59:05,967                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:59:05,967                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2025-09-08T01:59:05,967   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:05,967     117 |     struct unary_function
2025-09-08T01:59:05,967         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:11,592   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:59:11,592                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:59:11,592                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:59:11,592                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:59:11,592                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T01:59:11,592                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2025-09-08T01:59:11,592                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2025-09-08T01:59:11,592   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:11,593      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:59:11,593         |                           ^~~~~~~~~~~~~~
2025-09-08T01:59:11,593   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:59:11,593                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:59:11,593                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:59:11,593                    from ./base//sbml/validator/SBMLInternalValidator.h:62:
2025-09-08T01:59:11,593   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:11,593     117 |     struct unary_function
2025-09-08T01:59:11,593         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:15,903   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:59:15,903                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T01:59:15,903                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T01:59:15,904                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T01:59:15,904                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T01:59:15,904                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2025-09-08T01:59:15,904   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:15,904      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:59:15,904         |                           ^~~~~~~~~~~~~~
2025-09-08T01:59:15,904   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:59:15,904                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T01:59:15,904                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T01:59:15,904                    from ./base//sbml/validator/SBMLValidator.h:73:
2025-09-08T01:59:15,905   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:15,905     117 |     struct unary_function
2025-09-08T01:59:15,905         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:16,171   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T01:59:16,171   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T01:59:16,172      59 |   if (&orig == NULL)
2025-09-08T01:59:16,172         |             ^
2025-09-08T01:59:16,172   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2025-09-08T01:59:16,172      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2025-09-08T01:59:16,172         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T01:59:16,174   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T01:59:16,174   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T01:59:16,174      87 |   if (&rhs == NULL)
2025-09-08T01:59:16,174         |            ^
2025-09-08T01:59:16,175   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2025-09-08T01:59:16,175      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2025-09-08T01:59:16,175         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:59:16,176   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T01:59:16,176   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T01:59:16,176     168 |   if (&msg == NULL) return;
2025-09-08T01:59:16,176         |            ^
2025-09-08T01:59:16,176   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2025-09-08T01:59:16,177     166 | SBMLValidator::logFailure (const SBMLError& msg)
2025-09-08T01:59:16,177         |                            ~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:59:16,177   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T01:59:16,177   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T01:59:16,177     182 |   if (&filename == NULL) return 0;
2025-09-08T01:59:16,177         |                 ^
2025-09-08T01:59:16,177   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2025-09-08T01:59:16,177     180 | SBMLValidator::validate (const std::string& filename)
2025-09-08T01:59:16,177         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:59:16,620   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T01:59:16,620   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:59:16,621      87 |   if (&rhs == NULL)
2025-09-08T01:59:16,621         |   ^~
2025-09-08T01:59:16,621   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T01:59:16,621   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:59:16,621      59 |   if (&orig == NULL)
2025-09-08T01:59:16,621         |   ^~
2025-09-08T01:59:16,625   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T01:59:16,625   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:59:16,625     168 |   if (&msg == NULL) return;
2025-09-08T01:59:16,625         |   ^~
2025-09-08T01:59:16,625   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T01:59:16,625   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:59:16,625     182 |   if (&filename == NULL) return 0;
2025-09-08T01:59:16,626         |   ^~
2025-09-08T01:59:19,583   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:59:19,584                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:59:19,584                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2025-09-08T01:59:19,584   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:19,584      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:59:19,584         |                           ^~~~~~~~~~~~~~
2025-09-08T01:59:19,585   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:59:19,585                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T01:59:19,585   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:19,585     117 |     struct unary_function
2025-09-08T01:59:19,585         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:32,558   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:59:32,559                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:59:32,559                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2025-09-08T01:59:32,559   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:32,559      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:59:32,559         |                           ^~~~~~~~~~~~~~
2025-09-08T01:59:32,559   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:59:32,559                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T01:59:32,559   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:32,560     117 |     struct unary_function
2025-09-08T01:59:32,560         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:44,348   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T01:59:44,348                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T01:59:44,348                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T01:59:44,348                    from ./base/sbml/validator/VConstraint.cpp:33:
2025-09-08T01:59:44,348   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:44,348      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:59:44,349         |                           ^~~~~~~~~~~~~~
2025-09-08T01:59:44,349   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:59:44,349                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T01:59:44,349   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:44,349     117 |     struct unary_function
2025-09-08T01:59:44,349         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:44,703   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2025-09-08T01:59:44,703   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2025-09-08T01:59:44,703      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T01:59:44,703         |               ^
2025-09-08T01:59:44,704   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2025-09-08T01:59:44,704      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T01:59:44,704         |                          ~~~~~~~~~~~~~^~~~~~
2025-09-08T01:59:44,704   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2025-09-08T01:59:44,704      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T01:59:44,704         |                                   ^
2025-09-08T01:59:44,704   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2025-09-08T01:59:44,704      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T01:59:44,704         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T01:59:45,081   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:59:45,082      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T01:59:45,082         |               ^
2025-09-08T01:59:45,082   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:59:45,082      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T01:59:45,082         |                                   ^
2025-09-08T01:59:47,820   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2025-09-08T01:59:47,820                    from ./base/sbml/validator/Validator.cpp:39:
2025-09-08T01:59:47,820   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:47,821      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:59:47,821         |                           ^~~~~~~~~~~~~~
2025-09-08T01:59:47,821   In file included from /usr/include/c++/14/functional:49,
2025-09-08T01:59:47,821                    from ./base/sbml/validator/Validator.cpp:34:
2025-09-08T01:59:47,821   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:47,821     117 |     struct unary_function
2025-09-08T01:59:47,821         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:48,300   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:48,300      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T01:59:48,300         |                       ^~~~~~~~~~~~~~
2025-09-08T01:59:48,300   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:48,300     117 |     struct unary_function
2025-09-08T01:59:48,300         |            ^~~~~~~~~~~~~~
2025-09-08T01:59:48,676   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T01:59:48,676   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T01:59:48,676     709 |   if (&msg == NULL) return;
2025-09-08T01:59:48,676         |            ^
2025-09-08T01:59:48,676   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2025-09-08T01:59:48,676     707 | Validator::logFailure (const SBMLError& msg)
2025-09-08T01:59:48,676         |                        ~~~~~~~~~~~~~~~~~^~~
2025-09-08T01:59:48,677   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T01:59:48,677   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T01:59:48,678     754 |   if (&d == NULL) return 0;
2025-09-08T01:59:48,678         |          ^
2025-09-08T01:59:48,678   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2025-09-08T01:59:48,678     752 | Validator::validate (const SBMLDocument& d)
2025-09-08T01:59:48,678         |                      ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T01:59:48,683   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T01:59:48,683   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T01:59:48,683     815 |   if (&filename == NULL) return 0;
2025-09-08T01:59:48,684         |                 ^
2025-09-08T01:59:48,684   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2025-09-08T01:59:48,684     813 | Validator::validate (const std::string& filename)
2025-09-08T01:59:48,684         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T01:59:49,953   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T01:59:49,953   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:59:49,953     709 |   if (&msg == NULL) return;
2025-09-08T01:59:49,953         |   ^~
2025-09-08T01:59:49,975   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T01:59:49,975   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:59:49,975     754 |   if (&d == NULL) return 0;
2025-09-08T01:59:49,975         |   ^~
2025-09-08T01:59:49,975   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T01:59:49,975   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T01:59:49,975     815 |   if (&filename == NULL) return 0;
2025-09-08T01:59:49,976         |   ^~
2025-09-08T01:59:56,288   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T01:59:56,288                    from ./base//sbml/Model.h:446,
2025-09-08T01:59:56,288                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2025-09-08T01:59:56,288   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T01:59:56,288      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T01:59:56,288         |                           ^~~~~~~~~~~~~~
2025-09-08T01:59:56,289   In file included from /usr/include/c++/14/string:49,
2025-09-08T01:59:56,289                    from ./base//sbml/Model.h:444:
2025-09-08T01:59:56,289   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T01:59:56,289     117 |     struct unary_function
2025-09-08T01:59:56,289         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:00,679   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:00,680                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:00,680                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2025-09-08T02:00:00,680   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:00,680      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:00,680         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:00,680   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:00,680                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:00,680   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:00,681     117 |     struct unary_function
2025-09-08T02:00:00,681         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:04,649   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:04,649                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:04,649                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2025-09-08T02:00:04,649   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:04,649      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:04,649         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:04,650   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:04,650                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:04,650   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:04,650     117 |     struct unary_function
2025-09-08T02:00:04,650         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:12,495   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:12,495                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:12,495                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2025-09-08T02:00:12,495   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:12,495      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:12,496         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:12,496   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:12,496                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:12,496   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:12,496     117 |     struct unary_function
2025-09-08T02:00:12,496         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:16,800   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:16,800                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:16,800                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2025-09-08T02:00:16,800   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:16,800      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:16,801         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:16,801   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:16,801                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:16,801   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:16,801     117 |     struct unary_function
2025-09-08T02:00:16,801         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:17,061   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:00:17,061   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:00:17,061     104 |   if (&(node) == NULL)
2025-09-08T02:00:17,061         |               ^
2025-09-08T02:00:17,061   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2025-09-08T02:00:17,062     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:00:17,062         |                                                ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:00:17,476   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:00:17,477     104 |   if (&(node) == NULL)
2025-09-08T02:00:17,477         |   ^~
2025-09-08T02:00:20,917   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:20,917                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:20,917                    from ./base/sbml/validator/constraints/CiElementNot0DComp.cpp:35:
2025-09-08T02:00:20,917   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:20,917      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:20,917         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:20,918   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:20,918                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:20,918   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:20,918     117 |     struct unary_function
2025-09-08T02:00:20,918         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:21,179   ./base/sbml/validator/constraints/CiElementNot0DComp.cpp: In member function ‘virtual void CiElementNot0DComp::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:00:21,179   ./base/sbml/validator/constraints/CiElementNot0DComp.cpp:108:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:00:21,180     108 |   if (&(node) == NULL)
2025-09-08T02:00:21,180         |               ^
2025-09-08T02:00:21,180   ./base/sbml/validator/constraints/CiElementNot0DComp.cpp:101:63: note: ‘node’ declared here
2025-09-08T02:00:21,180     101 | CiElementNot0DComp::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:00:21,180         |                                                ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:00:21,593   ./base/sbml/validator/constraints/CiElementNot0DComp.cpp:108:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:00:21,593     108 |   if (&(node) == NULL)
2025-09-08T02:00:21,594         |   ^~
2025-09-08T02:00:24,747   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:24,747                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:24,747                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2025-09-08T02:00:24,747   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:24,748      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:24,748         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:24,748   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:24,748                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:24,748   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:24,748     117 |     struct unary_function
2025-09-08T02:00:24,748         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:25,017   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:25,018     119 | struct CycleContains : public unary_function<IdList, bool>
2025-09-08T02:00:25,018         |                               ^~~~~~~~~~~~~~
2025-09-08T02:00:25,018   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:25,018     117 |     struct unary_function
2025-09-08T02:00:25,018         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:29,568   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:00:29,568                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:00:29,568                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:00:29,568                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2025-09-08T02:00:29,568   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:29,568      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:29,568         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:29,569   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:29,569                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T02:00:29,569                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T02:00:29,569                    from ./base//sbml/SBO.h:196,
2025-09-08T02:00:29,569                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2025-09-08T02:00:29,569   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:29,569     117 |     struct unary_function
2025-09-08T02:00:29,569         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:33,367   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:33,367                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:33,367                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2025-09-08T02:00:33,368   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:33,368      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:33,368         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:33,368   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:33,368                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:33,368   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:33,368     117 |     struct unary_function
2025-09-08T02:00:33,368         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:37,529   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:37,529                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:37,529                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2025-09-08T02:00:37,530   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:37,530      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:37,530         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:37,530   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:37,530                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:37,530   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:37,530     117 |     struct unary_function
2025-09-08T02:00:37,530         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:37,789   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:00:37,789   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:00:37,789     101 |   if (&(node) == NULL)
2025-09-08T02:00:37,789         |               ^
2025-09-08T02:00:37,789   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2025-09-08T02:00:37,789      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:00:37,789         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:00:38,192   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:00:38,192     101 |   if (&(node) == NULL)
2025-09-08T02:00:38,193         |   ^~
2025-09-08T02:00:41,288   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:41,289                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:41,289                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2025-09-08T02:00:41,289   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:41,289      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:41,289         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:41,289   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:41,289                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:41,289   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:41,289     117 |     struct unary_function
2025-09-08T02:00:41,290         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:45,472   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:45,472                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:45,472                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2025-09-08T02:00:45,472   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:45,472      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:45,472         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:45,472   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:45,473                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:45,473   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:45,473     117 |     struct unary_function
2025-09-08T02:00:45,473         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:45,731   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:00:45,731   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:00:45,731     103 |   if (&(node) == NULL)
2025-09-08T02:00:45,731         |               ^
2025-09-08T02:00:45,731   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2025-09-08T02:00:45,731     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:00:45,731         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:00:46,138   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:00:46,139     103 |   if (&(node) == NULL)
2025-09-08T02:00:46,139         |   ^~
2025-09-08T02:00:49,276   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:49,277                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:49,277                    from ./base/sbml/validator/constraints/FunctionDefinitionRecursion.cpp:35:
2025-09-08T02:00:49,277   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:49,277      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:49,277         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:49,277   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:49,277                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:49,277   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:49,277     117 |     struct unary_function
2025-09-08T02:00:49,278         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:55,047   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:55,047                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:55,048                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2025-09-08T02:00:55,048   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:55,048      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:55,048         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:55,048   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:55,048                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:55,048   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:55,048     117 |     struct unary_function
2025-09-08T02:00:55,049         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:58,797   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:00:58,798                    from ./base//sbml/Model.h:446,
2025-09-08T02:00:58,798                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2025-09-08T02:00:58,798   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:00:58,798      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:00:58,798         |                           ^~~~~~~~~~~~~~
2025-09-08T02:00:58,798   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:00:58,798                    from ./base//sbml/Model.h:444:
2025-09-08T02:00:58,799   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:00:58,799     117 |     struct unary_function
2025-09-08T02:00:58,799         |            ^~~~~~~~~~~~~~
2025-09-08T02:00:59,058   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:00:59,058   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:00:59,058     104 |   if (&(node) == NULL)
2025-09-08T02:00:59,058         |               ^
2025-09-08T02:00:59,058   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T02:00:59,058     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:00:59,058         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:00:59,468   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:00:59,469     104 |   if (&(node) == NULL)
2025-09-08T02:00:59,469         |   ^~
2025-09-08T02:01:02,687   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:01:02,688                    from ./base//sbml/Model.h:446,
2025-09-08T02:01:02,688                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2025-09-08T02:01:02,688   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:02,688      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:02,688         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:02,688   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:02,688                    from ./base//sbml/Model.h:444:
2025-09-08T02:01:02,688   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:02,689     117 |     struct unary_function
2025-09-08T02:01:02,689         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:06,458   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:01:06,459                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:01:06,459                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:01:06,459                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T02:01:06,459                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2025-09-08T02:01:06,459   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:06,459      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:06,459         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:06,459   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:06,459                    from ./base/sbml/validator/constraints/IdBase.h:42:
2025-09-08T02:01:06,460   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:06,460     117 |     struct unary_function
2025-09-08T02:01:06,460         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:10,086   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:01:10,086                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:01:10,086                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:01:10,086                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2025-09-08T02:01:10,086   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:10,087      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:10,087         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:10,087   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:10,088                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T02:01:10,088   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:10,088     117 |     struct unary_function
2025-09-08T02:01:10,088         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:13,796   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:01:13,796                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:01:13,796                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:01:13,796                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2025-09-08T02:01:13,796   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:13,796      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:13,796         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:13,797   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:13,797                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T02:01:13,797                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T02:01:13,797                    from ./base//sbml/SBO.h:196,
2025-09-08T02:01:13,797                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2025-09-08T02:01:13,797   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:13,797     117 |     struct unary_function
2025-09-08T02:01:13,797         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:17,723   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:01:17,723                    from ./base//sbml/Model.h:446,
2025-09-08T02:01:17,723                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2025-09-08T02:01:17,723   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:17,723      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:17,723         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:17,723   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:17,724                    from ./base//sbml/Model.h:444:
2025-09-08T02:01:17,724   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:17,724     117 |     struct unary_function
2025-09-08T02:01:17,724         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:22,070   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:01:22,070                    from ./base//sbml/Model.h:446,
2025-09-08T02:01:22,070                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2025-09-08T02:01:22,071   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:22,071      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:22,071         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:22,071   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:22,071                    from ./base//sbml/Model.h:444:
2025-09-08T02:01:22,071   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:22,071     117 |     struct unary_function
2025-09-08T02:01:22,071         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:25,818   In file included from ./base//sbml/Rule.h:141,
2025-09-08T02:01:25,818                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T02:01:25,818                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2025-09-08T02:01:25,818   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:25,819      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:25,819         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:25,819   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:25,819                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T02:01:25,819                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T02:01:25,819                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T02:01:25,819                    from ./base//sbml/SBase.h:145,
2025-09-08T02:01:25,819                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2025-09-08T02:01:25,819   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:25,819     117 |     struct unary_function
2025-09-08T02:01:25,820         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:29,276   In file included from ./base//sbml/Rule.h:141,
2025-09-08T02:01:29,276                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T02:01:29,276                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2025-09-08T02:01:29,276   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:29,276      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:29,276         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:29,277   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:29,277                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T02:01:29,277                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T02:01:29,277                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T02:01:29,277                    from ./base//sbml/SBase.h:145,
2025-09-08T02:01:29,277                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2025-09-08T02:01:29,277   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:29,277     117 |     struct unary_function
2025-09-08T02:01:29,277         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:32,750   In file included from ./base//sbml/Rule.h:141,
2025-09-08T02:01:32,750                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T02:01:32,750                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2025-09-08T02:01:32,750   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:32,750      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:32,750         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:32,751   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:32,751                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T02:01:32,751                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T02:01:32,751                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T02:01:32,751                    from ./base//sbml/SBase.h:145,
2025-09-08T02:01:32,751                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2025-09-08T02:01:32,751   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:32,751     117 |     struct unary_function
2025-09-08T02:01:32,751         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:36,219   In file included from ./base//sbml/Rule.h:141,
2025-09-08T02:01:36,219                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T02:01:36,219                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2025-09-08T02:01:36,219   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:36,219      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:36,219         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:36,220   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:36,220                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T02:01:36,220                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T02:01:36,220                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T02:01:36,220                    from ./base//sbml/SBase.h:145,
2025-09-08T02:01:36,220                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2025-09-08T02:01:36,220   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:36,220     117 |     struct unary_function
2025-09-08T02:01:36,220         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:39,660   In file included from ./base//sbml/Rule.h:141,
2025-09-08T02:01:39,660                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T02:01:39,660                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2025-09-08T02:01:39,661   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:39,661      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:39,661         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:39,662   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:39,662                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T02:01:39,662                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T02:01:39,662                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T02:01:39,662                    from ./base//sbml/SBase.h:145,
2025-09-08T02:01:39,662                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2025-09-08T02:01:39,662   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:39,662     117 |     struct unary_function
2025-09-08T02:01:39,662         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:43,144   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:01:43,145                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:01:43,145                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:01:43,145                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2025-09-08T02:01:43,145   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:43,145      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:43,145         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:43,146   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:43,146                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T02:01:43,146                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T02:01:43,146                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T02:01:43,146                    from ./base//sbml/SBase.h:145,
2025-09-08T02:01:43,146                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2025-09-08T02:01:43,146   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:43,146     117 |     struct unary_function
2025-09-08T02:01:43,147         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:46,712   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:01:46,712                    from ./base//sbml/Model.h:446,
2025-09-08T02:01:46,712                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2025-09-08T02:01:46,712   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:46,712      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:46,712         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:46,713   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:46,713                    from ./base//sbml/Model.h:444:
2025-09-08T02:01:46,713   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:46,714     117 |     struct unary_function
2025-09-08T02:01:46,714         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:46,975   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:01:46,975   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:01:46,975     104 |   if (&(node) == NULL)
2025-09-08T02:01:46,975         |               ^
2025-09-08T02:01:46,975   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2025-09-08T02:01:46,975     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:01:46,975         |                                             ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:01:47,375   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:01:47,376     104 |   if (&(node) == NULL)
2025-09-08T02:01:47,376         |   ^~
2025-09-08T02:01:50,470   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:01:50,470                    from ./base//sbml/Model.h:446,
2025-09-08T02:01:50,471                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2025-09-08T02:01:50,471   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:50,471      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:50,471         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:50,472   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:50,472                    from ./base//sbml/Model.h:444:
2025-09-08T02:01:50,472   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:50,472     117 |     struct unary_function
2025-09-08T02:01:50,472         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:50,732   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:01:50,732   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:01:50,732     104 |   if (&(node) == NULL)
2025-09-08T02:01:50,732         |               ^
2025-09-08T02:01:50,732   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T02:01:50,732     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:01:50,732         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:01:51,143   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:01:51,143     104 |   if (&(node) == NULL)
2025-09-08T02:01:51,144         |   ^~
2025-09-08T02:01:54,317   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:01:54,317                    from ./base//sbml/Model.h:446,
2025-09-08T02:01:54,317                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2025-09-08T02:01:54,317   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:54,317      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:54,317         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:54,318   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:54,318                    from ./base//sbml/Model.h:444:
2025-09-08T02:01:54,318   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:54,318     117 |     struct unary_function
2025-09-08T02:01:54,318         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:58,440   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:01:58,440                    from ./base//sbml/Model.h:446,
2025-09-08T02:01:58,440                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2025-09-08T02:01:58,440   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:01:58,440      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:01:58,440         |                           ^~~~~~~~~~~~~~
2025-09-08T02:01:58,441   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:01:58,441                    from ./base//sbml/Model.h:444:
2025-09-08T02:01:58,441   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:01:58,441     117 |     struct unary_function
2025-09-08T02:01:58,442         |            ^~~~~~~~~~~~~~
2025-09-08T02:01:58,703   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:01:58,703   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:01:58,703     100 |   if (&(node) == NULL)
2025-09-08T02:01:58,703         |               ^
2025-09-08T02:01:58,704   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2025-09-08T02:01:58,704      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:01:58,704         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:01:59,109   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:01:59,109     100 |   if (&(node) == NULL)
2025-09-08T02:01:59,109         |   ^~
2025-09-08T02:02:02,198   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:02:02,198                    from ./base//sbml/Model.h:446,
2025-09-08T02:02:02,198                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2025-09-08T02:02:02,199   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:02,199      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:02,199         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:02,199   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:02,199                    from ./base//sbml/Model.h:444:
2025-09-08T02:02:02,199   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:02,199     117 |     struct unary_function
2025-09-08T02:02:02,199         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:06,350   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:02:06,351                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:02:06,351                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:02:06,351                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2025-09-08T02:02:06,351   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:06,351      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:06,351         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:06,351   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:06,351                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T02:02:06,352   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:06,352     117 |     struct unary_function
2025-09-08T02:02:06,352         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:09,723   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:02:09,724                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:02:09,724                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:02:09,724                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2025-09-08T02:02:09,724   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:09,724      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:09,724         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:09,724   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:09,725                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T02:02:09,725   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:09,725     117 |     struct unary_function
2025-09-08T02:02:09,725         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:13,295   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:02:13,295                    from ./base//sbml/Model.h:446,
2025-09-08T02:02:13,295                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2025-09-08T02:02:13,295   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:13,295      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:13,295         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:13,296   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:13,296                    from ./base//sbml/Model.h:444:
2025-09-08T02:02:13,296   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:13,296     117 |     struct unary_function
2025-09-08T02:02:13,296         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:13,556   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:02:13,556   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:02:13,556     100 |   if (&(node) == NULL)
2025-09-08T02:02:13,556         |               ^
2025-09-08T02:02:13,557   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2025-09-08T02:02:13,557      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:02:13,557         |                                                 ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:02:13,970   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:02:13,970     100 |   if (&(node) == NULL)
2025-09-08T02:02:13,970         |   ^~
2025-09-08T02:02:17,251   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:02:17,251                    from ./base//sbml/Model.h:446,
2025-09-08T02:02:17,251                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2025-09-08T02:02:17,251   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:17,251      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:17,251         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:17,251   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:17,252                    from ./base//sbml/Model.h:444:
2025-09-08T02:02:17,252   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:17,252     117 |     struct unary_function
2025-09-08T02:02:17,252         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:17,511   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:02:17,511   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:02:17,511     105 |   if (&(node) == NULL)
2025-09-08T02:02:17,511         |               ^
2025-09-08T02:02:17,511   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2025-09-08T02:02:17,511     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:02:17,511         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:02:17,920   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:02:17,920     105 |   if (&(node) == NULL)
2025-09-08T02:02:17,920         |   ^~
2025-09-08T02:02:21,008   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:02:21,008                    from ./base//sbml/Model.h:446,
2025-09-08T02:02:21,008                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2025-09-08T02:02:21,009   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:21,009      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:21,009         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:21,009   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:21,010                    from ./base//sbml/Model.h:444:
2025-09-08T02:02:21,010   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:21,010     117 |     struct unary_function
2025-09-08T02:02:21,010         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:21,276   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:02:21,276   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:02:21,276     104 |   if (&(node) == NULL)
2025-09-08T02:02:21,276         |               ^
2025-09-08T02:02:21,276   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2025-09-08T02:02:21,276     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:02:21,276         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:02:21,677   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:02:21,678     104 |   if (&(node) == NULL)
2025-09-08T02:02:21,678         |   ^~
2025-09-08T02:02:24,774   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:02:24,774                    from ./base//sbml/Model.h:446,
2025-09-08T02:02:24,774                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2025-09-08T02:02:24,774   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:24,774      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:24,774         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:24,775   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:24,775                    from ./base//sbml/Model.h:444:
2025-09-08T02:02:24,775   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:24,775     117 |     struct unary_function
2025-09-08T02:02:24,776         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:27,265   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2025-09-08T02:02:27,265   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2025-09-08T02:02:27,265     188 |       sprintf(react, "KL_%u", n);
2025-09-08T02:02:27,265         |                          ^~
2025-09-08T02:02:27,266   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2025-09-08T02:02:27,266     188 |       sprintf(react, "KL_%u", n);
2025-09-08T02:02:27,266         |                      ^~~~~~~
2025-09-08T02:02:27,266   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2025-09-08T02:02:27,266     188 |       sprintf(react, "KL_%u", n);
2025-09-08T02:02:27,266         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T02:02:27,266   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2025-09-08T02:02:27,266     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T02:02:27,266         |                         ^~
2025-09-08T02:02:27,267   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2025-09-08T02:02:27,267     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T02:02:27,267         |                   ^~~~~~~~~
2025-09-08T02:02:27,267   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2025-09-08T02:02:27,267     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T02:02:27,267         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T02:02:37,059   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:02:37,059                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:02:37,059                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:02:37,060                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2025-09-08T02:02:37,060                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2025-09-08T02:02:37,060   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:37,060      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:37,060         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:37,060   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:37,060                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2025-09-08T02:02:37,060   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:37,061     117 |     struct unary_function
2025-09-08T02:02:37,061         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:40,543   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:02:40,543                    from ./base//sbml/Model.h:446,
2025-09-08T02:02:40,544                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2025-09-08T02:02:40,544   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:40,544      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:40,544         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:40,544   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:40,544                    from ./base//sbml/Model.h:444:
2025-09-08T02:02:40,544   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:40,544     117 |     struct unary_function
2025-09-08T02:02:40,544         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:40,803   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:02:40,803   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:02:40,803     100 |   if (&(node) == NULL)
2025-09-08T02:02:40,803         |               ^
2025-09-08T02:02:40,803   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2025-09-08T02:02:40,803      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:02:40,804         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:02:41,205   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:02:41,205     100 |   if (&(node) == NULL)
2025-09-08T02:02:41,205         |   ^~
2025-09-08T02:02:44,303   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:02:44,303                    from ./base//sbml/Model.h:446,
2025-09-08T02:02:44,303                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2025-09-08T02:02:44,303   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:44,303      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:44,303         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:44,304   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:44,304                    from ./base//sbml/Model.h:444:
2025-09-08T02:02:44,304   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:44,304     117 |     struct unary_function
2025-09-08T02:02:44,304         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:44,563   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:02:44,563   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:02:44,563     103 |   if (&(node) == NULL)
2025-09-08T02:02:44,563         |               ^
2025-09-08T02:02:44,563   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2025-09-08T02:02:44,563     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:02:44,563         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:02:44,966   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:02:44,966     103 |   if (&(node) == NULL)
2025-09-08T02:02:44,966         |   ^~
2025-09-08T02:02:48,105   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:02:48,106                    from ./base//sbml/Model.h:446,
2025-09-08T02:02:48,106                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2025-09-08T02:02:48,106   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:48,106      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:48,106         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:48,106   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:48,106                    from ./base//sbml/Model.h:444:
2025-09-08T02:02:48,106   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:48,106     117 |     struct unary_function
2025-09-08T02:02:48,107         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:52,960   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:02:52,961                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:02:52,961                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:02:52,961                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2025-09-08T02:02:52,961   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:52,961      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:52,961         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:52,961   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:52,961                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T02:02:52,961                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T02:02:52,962                    from ./base//sbml/SBO.h:196,
2025-09-08T02:02:52,962                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2025-09-08T02:02:52,962   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:52,962     117 |     struct unary_function
2025-09-08T02:02:52,962         |            ^~~~~~~~~~~~~~
2025-09-08T02:02:56,860   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:02:56,860                    from ./base//sbml/Model.h:446,
2025-09-08T02:02:56,860                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2025-09-08T02:02:56,860   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:02:56,860      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:02:56,860         |                           ^~~~~~~~~~~~~~
2025-09-08T02:02:56,861   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:02:56,861                    from ./base//sbml/Model.h:444:
2025-09-08T02:02:56,861   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:02:56,861     117 |     struct unary_function
2025-09-08T02:02:56,861         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:00,774   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:00,774                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:00,774                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2025-09-08T02:03:00,774   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:00,774      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:00,774         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:00,775   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:00,775                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:00,775   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:00,775     117 |     struct unary_function
2025-09-08T02:03:00,775         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:04,707   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:03:04,707                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:03:04,707                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:03:04,707                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T02:03:04,707                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2025-09-08T02:03:04,707                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2025-09-08T02:03:04,707   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:04,708      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:04,708         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:04,709   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:04,709                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T02:03:04,709                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T02:03:04,709                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T02:03:04,709                    from ./base//sbml/SBase.h:145,
2025-09-08T02:03:04,709                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2025-09-08T02:03:04,710   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:04,710     117 |     struct unary_function
2025-09-08T02:03:04,710         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:09,143   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:09,144                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:09,144                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2025-09-08T02:03:09,144   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:09,144      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:09,144         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:09,145   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:09,145                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:09,145   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:09,145     117 |     struct unary_function
2025-09-08T02:03:09,145         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:12,664   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:12,665                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:12,665                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2025-09-08T02:03:12,665   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:12,665      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:12,665         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:12,666   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:12,666                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:12,666   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:12,666     117 |     struct unary_function
2025-09-08T02:03:12,666         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:16,182   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:16,182                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:16,182                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2025-09-08T02:03:16,182   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:16,182      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:16,182         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:16,183   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:16,183                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:16,183   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:16,183     117 |     struct unary_function
2025-09-08T02:03:16,183         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:19,939   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:03:19,939                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:03:19,939                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:03:19,939                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2025-09-08T02:03:19,939                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2025-09-08T02:03:19,939   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:19,940      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:19,940         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:19,940   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:19,941                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2025-09-08T02:03:19,941   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:19,941     117 |     struct unary_function
2025-09-08T02:03:19,941         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:24,777   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:24,777                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:24,777                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2025-09-08T02:03:24,777   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:24,777      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:24,777         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:24,778   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:24,778                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:24,778   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:24,778     117 |     struct unary_function
2025-09-08T02:03:24,778         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:28,733   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:28,733                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:28,733                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2025-09-08T02:03:28,733   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:28,733      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:28,734         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:28,734   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:28,734                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:28,734   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:28,735     117 |     struct unary_function
2025-09-08T02:03:28,735         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:32,260   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:32,260                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:32,260                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2025-09-08T02:03:32,260   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:32,260      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:32,260         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:32,261   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:32,261                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:32,261   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:32,261     117 |     struct unary_function
2025-09-08T02:03:32,261         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:35,839   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:35,839                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:35,839                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2025-09-08T02:03:35,839   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:35,839      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:35,839         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:35,840   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:35,840                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:35,840   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:35,841     117 |     struct unary_function
2025-09-08T02:03:35,841         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:39,456   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:39,457                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:39,457                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2025-09-08T02:03:39,457   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:39,457      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:39,457         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:39,458   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:39,458                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:39,458   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:39,458     117 |     struct unary_function
2025-09-08T02:03:39,458         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:43,466   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:43,466                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:43,466                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2025-09-08T02:03:43,466   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:43,466      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:43,466         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:43,467   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:43,467                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:43,467   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:43,467     117 |     struct unary_function
2025-09-08T02:03:43,468         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:47,075   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T02:03:47,075                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T02:03:47,075                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T02:03:47,075                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2025-09-08T02:03:47,075   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:47,075      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:47,075         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:47,076   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:47,077                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T02:03:47,077                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T02:03:47,077                    from ./base//sbml/SBO.h:196,
2025-09-08T02:03:47,077                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2025-09-08T02:03:47,077   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:47,077     117 |     struct unary_function
2025-09-08T02:03:47,077         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:50,757   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:50,758                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:50,758                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2025-09-08T02:03:50,758   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:50,758      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:50,758         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:50,758   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:50,758                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:50,758   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:50,759     117 |     struct unary_function
2025-09-08T02:03:50,759         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:54,647   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T02:03:54,647                    from ./base//sbml/Model.h:446,
2025-09-08T02:03:54,647                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2025-09-08T02:03:54,647   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:03:54,647      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:03:54,648         |                           ^~~~~~~~~~~~~~
2025-09-08T02:03:54,648   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:03:54,648                    from ./base//sbml/Model.h:444:
2025-09-08T02:03:54,648   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:03:54,648     117 |     struct unary_function
2025-09-08T02:03:54,648         |            ^~~~~~~~~~~~~~
2025-09-08T02:03:54,914   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T02:03:54,915   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:03:54,915     100 |   if (&(node) == NULL)
2025-09-08T02:03:54,915         |               ^
2025-09-08T02:03:54,915   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2025-09-08T02:03:54,915      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T02:03:54,915         |                                               ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:03:55,312   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:03:55,313     100 |   if (&(node) == NULL)
2025-09-08T02:03:55,313         |   ^~
2025-09-08T02:04:06,112   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T02:04:06,113   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:04:06,113      90 |   if (&orig == NULL)
2025-09-08T02:04:06,113         |             ^
2025-09-08T02:04:06,113   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2025-09-08T02:04:06,113      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2025-09-08T02:04:06,113         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:06,117   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T02:04:06,117   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:04:06,117     110 |   if (&rhs == NULL)
2025-09-08T02:04:06,118         |            ^
2025-09-08T02:04:06,118   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2025-09-08T02:04:06,118     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2025-09-08T02:04:06,118         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:06,119   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T02:04:06,119   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:06,119     149 |   if (&name == NULL || &value == NULL
2025-09-08T02:04:06,119         |             ^
2025-09-08T02:04:06,119   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2025-09-08T02:04:06,120     144 | XMLAttributes::add (const std::string& name,
2025-09-08T02:04:06,120         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:06,120   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:06,120     149 |   if (&name == NULL || &value == NULL
2025-09-08T02:04:06,120         |                               ^
2025-09-08T02:04:06,120   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2025-09-08T02:04:06,120     145 |                     const std::string& value,
2025-09-08T02:04:06,120         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:06,120   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2025-09-08T02:04:06,120     150 |                     || &namespaceURI == NULL
2025-09-08T02:04:06,121         |                                      ^
2025-09-08T02:04:06,121   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2025-09-08T02:04:06,121     146 |                     const std::string& namespaceURI,
2025-09-08T02:04:06,121         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T02:04:06,121   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T02:04:06,121     151 |                     || &prefix == NULL)
2025-09-08T02:04:06,121         |                                ^
2025-09-08T02:04:06,121   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2025-09-08T02:04:06,121     147 |                     const std::string& prefix)
2025-09-08T02:04:06,121         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:06,122   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T02:04:06,122   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:06,122     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:06,122         |               ^
2025-09-08T02:04:06,122   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2025-09-08T02:04:06,122     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T02:04:06,122         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:06,122   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:06,122     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:06,123         |                                 ^
2025-09-08T02:04:06,123   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2025-09-08T02:04:06,123     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T02:04:06,123         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:06,127   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T02:04:06,127   ./base/sbml/xml/XMLAttributes.cpp:281:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:06,127     281 |   if (&name == NULL) return -1;
2025-09-08T02:04:06,127         |             ^
2025-09-08T02:04:06,127   ./base/sbml/xml/XMLAttributes.cpp:279:45: note: ‘name’ declared here
2025-09-08T02:04:06,128     279 | XMLAttributes::getIndex (const std::string& name) const
2025-09-08T02:04:06,128         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:06,128   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T02:04:06,129   ./base/sbml/xml/XMLAttributes.cpp:301:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:06,129     301 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T02:04:06,129         |             ^
2025-09-08T02:04:06,129   ./base/sbml/xml/XMLAttributes.cpp:299:45: note: ‘name’ declared here
2025-09-08T02:04:06,129     299 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T02:04:06,129         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:06,129   ./base/sbml/xml/XMLAttributes.cpp:301:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T02:04:06,129     301 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T02:04:06,129         |                             ^
2025-09-08T02:04:06,130   ./base/sbml/xml/XMLAttributes.cpp:299:70: note: ‘uri’ declared here
2025-09-08T02:04:06,130     299 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T02:04:06,130         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:06,130   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T02:04:06,131   ./base/sbml/xml/XMLAttributes.cpp:320:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:06,131     320 |   if (&triple  == NULL) return -1;
2025-09-08T02:04:06,131         |                ^
2025-09-08T02:04:06,131   ./base/sbml/xml/XMLAttributes.cpp:318:43: note: ‘triple’ declared here
2025-09-08T02:04:06,131     318 | XMLAttributes::getIndex (const XMLTriple& triple) const
2025-09-08T02:04:06,131         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:06,136   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,136   ./base/sbml/xml/XMLAttributes.cpp:541:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:06,137     541 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T02:04:06,137         |                ^
2025-09-08T02:04:06,137   ./base/sbml/xml/XMLAttributes.cpp:529:41: note: ‘value’ declared here
2025-09-08T02:04:06,137     529 |                          , bool&        value
2025-09-08T02:04:06,137         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:06,138   ./base/sbml/xml/XMLAttributes.cpp:560:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:06,139     560 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T02:04:06,139         |                                          ^
2025-09-08T02:04:06,139   ./base/sbml/xml/XMLAttributes.cpp:528:47: note: ‘name’ declared here
2025-09-08T02:04:06,139     528 |                          , const std::string& name
2025-09-08T02:04:06,139         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:06,140   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,140   ./base/sbml/xml/XMLAttributes.cpp:618:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:06,140     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T02:04:06,140         |               ^
2025-09-08T02:04:06,140   ./base/sbml/xml/XMLAttributes.cpp:611:45: note: ‘triple’ declared here
2025-09-08T02:04:06,140     611 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T02:04:06,141         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:06,141   ./base/sbml/xml/XMLAttributes.cpp:618:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:06,141     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T02:04:06,141         |                                 ^
2025-09-08T02:04:06,141   ./base/sbml/xml/XMLAttributes.cpp:612:45: note: ‘value’ declared here
2025-09-08T02:04:06,141     612 |                          , bool&            value
2025-09-08T02:04:06,141         |                            ~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:06,141   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,141   ./base/sbml/xml/XMLAttributes.cpp:655:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:06,142     655 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T02:04:06,142         |                 ^
2025-09-08T02:04:06,142   ./base/sbml/xml/XMLAttributes.cpp:643:41: note: ‘value’ declared here
2025-09-08T02:04:06,142     643 |                          , double&      value
2025-09-08T02:04:06,142         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:06,144   ./base/sbml/xml/XMLAttributes.cpp:703:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:06,144     703 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T02:04:06,145         |                                          ^
2025-09-08T02:04:06,145   ./base/sbml/xml/XMLAttributes.cpp:642:47: note: ‘name’ declared here
2025-09-08T02:04:06,145     642 |                          , const std::string& name
2025-09-08T02:04:06,145         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:06,147   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,147   ./base/sbml/xml/XMLAttributes.cpp:801:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:06,147     801 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T02:04:06,147         |                                     ^
2025-09-08T02:04:06,147   ./base/sbml/xml/XMLAttributes.cpp:789:41: note: ‘value’ declared here
2025-09-08T02:04:06,147     789 |                          , long&        value
2025-09-08T02:04:06,147         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:06,147   ./base/sbml/xml/XMLAttributes.cpp:821:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:06,148     821 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T02:04:06,148         |                                          ^
2025-09-08T02:04:06,148   ./base/sbml/xml/XMLAttributes.cpp:788:65: note: ‘name’ declared here
2025-09-08T02:04:06,148     788 |                                            , const std::string& name
2025-09-08T02:04:06,148         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:06,148   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,149   ./base/sbml/xml/XMLAttributes.cpp:856:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:06,149     856 |   if (&triple == NULL) return false;
2025-09-08T02:04:06,149         |               ^
2025-09-08T02:04:06,149   ./base/sbml/xml/XMLAttributes.cpp:849:45: note: ‘triple’ declared here
2025-09-08T02:04:06,149     849 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T02:04:06,149         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:06,150   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,150   ./base/sbml/xml/XMLAttributes.cpp:945:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:06,150     945 |   if (&triple == NULL) return false;
2025-09-08T02:04:06,151         |               ^
2025-09-08T02:04:06,151   ./base/sbml/xml/XMLAttributes.cpp:938:45: note: ‘triple’ declared here
2025-09-08T02:04:06,151     938 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T02:04:06,151         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:06,152   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,152   ./base/sbml/xml/XMLAttributes.cpp:1037:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:06,152    1037 |   if (&triple == NULL) return false;
2025-09-08T02:04:06,152         |               ^
2025-09-08T02:04:06,152   ./base/sbml/xml/XMLAttributes.cpp:1030:45: note: ‘triple’ declared here
2025-09-08T02:04:06,153    1030 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T02:04:06,153         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:06,153   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,153   ./base/sbml/xml/XMLAttributes.cpp:1091:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:06,154    1091 |   if ( index != -1 && &value != NULL)
2025-09-08T02:04:06,154         |                              ^
2025-09-08T02:04:06,154   ./base/sbml/xml/XMLAttributes.cpp:1083:41: note: ‘value’ declared here
2025-09-08T02:04:06,154    1083 |                          , std::string& value
2025-09-08T02:04:06,154         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:06,154   ./base/sbml/xml/XMLAttributes.cpp:1099:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:06,154    1099 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T02:04:06,154         |                                                      ^
2025-09-08T02:04:06,155   ./base/sbml/xml/XMLAttributes.cpp:1082:47: note: ‘name’ declared here
2025-09-08T02:04:06,155    1082 |                          , const std::string& name
2025-09-08T02:04:06,155         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:06,155   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,155   ./base/sbml/xml/XMLAttributes.cpp:1127:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:06,155    1127 |   if (&triple == NULL) return false;
2025-09-08T02:04:06,155         |               ^
2025-09-08T02:04:06,155   ./base/sbml/xml/XMLAttributes.cpp:1120:45: note: ‘triple’ declared here
2025-09-08T02:04:06,156    1120 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T02:04:06,156         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:06,519   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T02:04:06,520   ./base/sbml/xml/XMLAttributes.cpp:320:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,520     320 |   if (&triple  == NULL) return -1;
2025-09-08T02:04:06,520         |   ^~
2025-09-08T02:04:06,531   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T02:04:06,531   ./base/sbml/xml/XMLAttributes.cpp:281:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,532     281 |   if (&name == NULL) return -1;
2025-09-08T02:04:06,532         |   ^~
2025-09-08T02:04:06,532   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T02:04:06,533   ./base/sbml/xml/XMLAttributes.cpp:301:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,533     301 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T02:04:06,533         |             ^
2025-09-08T02:04:06,533   ./base/sbml/xml/XMLAttributes.cpp:301:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,533     301 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T02:04:06,533         |                             ^
2025-09-08T02:04:06,544   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T02:04:06,545   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,545      90 |   if (&orig == NULL)
2025-09-08T02:04:06,545         |   ^~
2025-09-08T02:04:06,545   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T02:04:06,545   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,545     110 |   if (&rhs == NULL)
2025-09-08T02:04:06,545         |   ^~
2025-09-08T02:04:06,550   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T02:04:06,550   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,550     149 |   if (&name == NULL || &value == NULL
2025-09-08T02:04:06,550         |             ^
2025-09-08T02:04:06,550   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,550     149 |   if (&name == NULL || &value == NULL
2025-09-08T02:04:06,551         |                               ^
2025-09-08T02:04:06,551   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,551     150 |                     || &namespaceURI == NULL
2025-09-08T02:04:06,551         |                                      ^
2025-09-08T02:04:06,551   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,551     151 |                     || &prefix == NULL)
2025-09-08T02:04:06,551         |                                ^
2025-09-08T02:04:06,551   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T02:04:06,551   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,551     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:06,551         |               ^
2025-09-08T02:04:06,552   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,552     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:06,552         |                                 ^
2025-09-08T02:04:06,552   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,553   ./base/sbml/xml/XMLAttributes.cpp:560:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,553     560 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T02:04:06,553         |                                 ^
2025-09-08T02:04:06,553   ./base/sbml/xml/XMLAttributes.cpp:541:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,553     541 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T02:04:06,553         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T02:04:06,553   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,553   ./base/sbml/xml/XMLAttributes.cpp:618:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,553     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T02:04:06,554         |               ^
2025-09-08T02:04:06,554   ./base/sbml/xml/XMLAttributes.cpp:618:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,554     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T02:04:06,554         |                                 ^
2025-09-08T02:04:06,554   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,554   ./base/sbml/xml/XMLAttributes.cpp:703:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,554     703 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T02:04:06,555         |                                 ^
2025-09-08T02:04:06,555   ./base/sbml/xml/XMLAttributes.cpp:655:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,555     655 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T02:04:06,555         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T02:04:06,555   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,556   ./base/sbml/xml/XMLAttributes.cpp:821:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,556     821 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T02:04:06,556         |                                 ^
2025-09-08T02:04:06,556   ./base/sbml/xml/XMLAttributes.cpp:801:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,556     801 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T02:04:06,556         |                           ^
2025-09-08T02:04:06,556   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,556   ./base/sbml/xml/XMLAttributes.cpp:856:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,556     856 |   if (&triple == NULL) return false;
2025-09-08T02:04:06,556         |   ^~
2025-09-08T02:04:06,557   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,557   ./base/sbml/xml/XMLAttributes.cpp:945:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,557     945 |   if (&triple == NULL) return false;
2025-09-08T02:04:06,557         |   ^~
2025-09-08T02:04:06,557   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,558   ./base/sbml/xml/XMLAttributes.cpp:1037:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,558    1037 |   if (&triple == NULL) return false;
2025-09-08T02:04:06,558         |   ^~
2025-09-08T02:04:06,558   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,558   ./base/sbml/xml/XMLAttributes.cpp:1099:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,558    1099 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T02:04:06,558         |                                                      ^
2025-09-08T02:04:06,558   ./base/sbml/xml/XMLAttributes.cpp:1091:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,559    1091 |   if ( index != -1 && &value != NULL)
2025-09-08T02:04:06,559         |                              ^
2025-09-08T02:04:06,559   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T02:04:06,559   ./base/sbml/xml/XMLAttributes.cpp:1127:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:06,559    1127 |   if (&triple == NULL) return false;
2025-09-08T02:04:06,559         |   ^~
2025-09-08T02:04:14,112   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T02:04:14,113   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T02:04:14,113     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T02:04:14,113         |                       ^
2025-09-08T02:04:14,113   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T02:04:14,113     322 |                     , const std::string& details
2025-09-08T02:04:14,113         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T02:04:14,114   ./base/sbml/xml/XMLError.cpp:384:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T02:04:14,115     384 |     if ( &details != NULL && !details.empty() )
2025-09-08T02:04:14,115         |                   ^
2025-09-08T02:04:14,115   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T02:04:14,115     322 |                     , const std::string& details
2025-09-08T02:04:14,115         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T02:04:14,115   ./base/sbml/xml/XMLError.cpp:406:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T02:04:14,116     406 |   if (&details == NULL)
2025-09-08T02:04:14,116         |                ^
2025-09-08T02:04:14,116   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T02:04:14,116     322 |                     , const std::string& details
2025-09-08T02:04:14,116         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T02:04:14,119   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T02:04:14,119   ./base/sbml/xml/XMLError.cpp:431:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:04:14,119     431 |   if (&orig == NULL)
2025-09-08T02:04:14,119         |             ^
2025-09-08T02:04:14,119   ./base/sbml/xml/XMLError.cpp:429:36: note: ‘orig’ declared here
2025-09-08T02:04:14,119     429 | XMLError::XMLError(const XMLError& orig)
2025-09-08T02:04:14,120         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:14,121   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T02:04:14,122   ./base/sbml/xml/XMLError.cpp:458:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:04:14,122     458 |   if (&rhs == NULL)
2025-09-08T02:04:14,122         |            ^
2025-09-08T02:04:14,122   ./base/sbml/xml/XMLError.cpp:456:37: note: ‘rhs’ declared here
2025-09-08T02:04:14,122     456 | XMLError::operator=(const XMLError& rhs)
2025-09-08T02:04:14,122         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:14,460   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T02:04:14,460   ./base/sbml/xml/XMLError.cpp:431:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:14,460     431 |   if (&orig == NULL)
2025-09-08T02:04:14,460         |   ^~
2025-09-08T02:04:14,460   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T02:04:14,460   ./base/sbml/xml/XMLError.cpp:458:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:14,460     458 |   if (&rhs == NULL)
2025-09-08T02:04:14,461         |   ^~
2025-09-08T02:04:14,463   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T02:04:14,463   ./base/sbml/xml/XMLError.cpp:406:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:14,463     406 |   if (&details == NULL)
2025-09-08T02:04:14,463         |   ^~
2025-09-08T02:04:14,463   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:14,464     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T02:04:14,464         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T02:04:14,464   ./base/sbml/xml/XMLError.cpp:384:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:14,464     384 |     if ( &details != NULL && !details.empty() )
2025-09-08T02:04:14,464         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T02:04:17,505   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:04:17,505      96 | struct Delete : public unary_function<XMLError*, void>
2025-09-08T02:04:17,505         |                        ^~~~~~~~~~~~~~
2025-09-08T02:04:17,505   In file included from /usr/include/c++/14/functional:49,
2025-09-08T02:04:17,505                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2025-09-08T02:04:17,506   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:04:17,506     117 |     struct unary_function
2025-09-08T02:04:17,506         |            ^~~~~~~~~~~~~~
2025-09-08T02:04:17,508   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2025-09-08T02:04:17,508   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2025-09-08T02:04:17,508     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T02:04:17,508         |              ^
2025-09-08T02:04:17,508   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2025-09-08T02:04:17,509     118 | XMLErrorLog::add (const XMLError& error)
2025-09-08T02:04:17,509         |                   ~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:17,760   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:17,760     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T02:04:17,760         |   ^~
2025-09-08T02:04:19,722   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T02:04:19,723   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T02:04:19,723      57 |   if (&filename == NULL) return;
2025-09-08T02:04:19,723         |                 ^
2025-09-08T02:04:19,723   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2025-09-08T02:04:19,723      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2025-09-08T02:04:19,723         |                               ~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T02:04:19,874   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T02:04:19,874   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:19,874      57 |   if (&filename == NULL) return;
2025-09-08T02:04:19,874         |   ^~
2025-09-08T02:04:27,875   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T02:04:27,875   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:04:27,875      76 |   if (&orig == NULL)
2025-09-08T02:04:27,875         |             ^
2025-09-08T02:04:27,876   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2025-09-08T02:04:27,876      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2025-09-08T02:04:27,876         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:27,879   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T02:04:27,879   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:04:27,879      93 |   if (&rhs == NULL)
2025-09-08T02:04:27,880         |            ^
2025-09-08T02:04:27,880   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2025-09-08T02:04:27,880      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2025-09-08T02:04:27,880         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:27,882   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T02:04:27,882   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T02:04:27,882     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:27,882         |            ^
2025-09-08T02:04:27,882   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2025-09-08T02:04:27,882     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T02:04:27,882         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:27,883   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T02:04:27,883     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:27,883         |                               ^
2025-09-08T02:04:27,883   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2025-09-08T02:04:27,883     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T02:04:27,883         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:27,899   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T02:04:27,899   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T02:04:27,899     322 |   if (&prefix == NULL) return std::string();
2025-09-08T02:04:27,899         |               ^
2025-09-08T02:04:27,900   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2025-09-08T02:04:27,900     320 | XMLNamespaces::getURI (const std::string& prefix) const
2025-09-08T02:04:27,900         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:27,902   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T02:04:27,902   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T02:04:27,902     348 |   if (&uri == NULL) return false;
2025-09-08T02:04:27,902         |            ^
2025-09-08T02:04:27,902   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2025-09-08T02:04:27,902     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2025-09-08T02:04:27,902         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:27,903   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T02:04:27,903   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T02:04:27,903     359 |   if (&prefix == NULL) return false;
2025-09-08T02:04:27,904         |               ^
2025-09-08T02:04:27,904   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2025-09-08T02:04:27,904     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2025-09-08T02:04:27,904         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:27,905   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T02:04:27,905   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T02:04:27,905     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T02:04:27,905         |            ^
2025-09-08T02:04:27,905   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2025-09-08T02:04:27,905     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T02:04:27,905         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:27,906   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T02:04:27,906     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T02:04:27,906         |                               ^
2025-09-08T02:04:27,906   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2025-09-08T02:04:27,906     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T02:04:27,906         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:28,296   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T02:04:28,296   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:28,296     322 |   if (&prefix == NULL) return std::string();
2025-09-08T02:04:28,296         |   ^~
2025-09-08T02:04:28,297   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T02:04:28,297   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:28,298     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T02:04:28,298         |            ^
2025-09-08T02:04:28,298   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:28,298     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T02:04:28,298         |                               ^
2025-09-08T02:04:28,299   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T02:04:28,300   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:28,300     348 |   if (&uri == NULL) return false;
2025-09-08T02:04:28,300         |   ^~
2025-09-08T02:04:28,301   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T02:04:28,301   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:28,301     359 |   if (&prefix == NULL) return false;
2025-09-08T02:04:28,301         |   ^~
2025-09-08T02:04:28,307   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T02:04:28,307   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:28,308      76 |   if (&orig == NULL)
2025-09-08T02:04:28,308         |   ^~
2025-09-08T02:04:28,308   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T02:04:28,308   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:28,309      93 |   if (&rhs == NULL)
2025-09-08T02:04:28,309         |   ^~
2025-09-08T02:04:28,311   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T02:04:28,312   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:28,312     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:28,312         |            ^
2025-09-08T02:04:28,312   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:28,312     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:28,312         |                               ^
2025-09-08T02:04:32,715   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T02:04:32,715   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:04:32,715     197 |   if (&rhs == NULL)
2025-09-08T02:04:32,715         |            ^
2025-09-08T02:04:32,716   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2025-09-08T02:04:32,716     195 | XMLNode::operator=(const XMLNode& rhs)
2025-09-08T02:04:32,716         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:32,718   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T02:04:32,718   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:04:32,718     230 |   if (&(node) == NULL)
2025-09-08T02:04:32,718         |               ^
2025-09-08T02:04:32,718   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2025-09-08T02:04:32,719     226 | XMLNode::addChild (const XMLNode& node)
2025-09-08T02:04:32,719         |                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:32,720   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T02:04:32,720   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T02:04:32,720     267 |   if (&(node) == NULL)
2025-09-08T02:04:32,720         |               ^
2025-09-08T02:04:32,720   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2025-09-08T02:04:32,720     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2025-09-08T02:04:32,721         |                                       ~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:32,726   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T02:04:32,726   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:32,726     413 |   if (&name == NULL) return -1;
2025-09-08T02:04:32,726         |             ^
2025-09-08T02:04:32,727   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2025-09-08T02:04:32,727     411 | XMLNode::getIndex (const std::string& name) const
2025-09-08T02:04:32,727         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:32,728   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T02:04:32,729   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2025-09-08T02:04:32,729     435 |   if (&other == NULL) return false;
2025-09-08T02:04:32,729         |              ^
2025-09-08T02:04:32,729   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2025-09-08T02:04:32,729     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2025-09-08T02:04:32,729         |                 ~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:32,735   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T02:04:32,736   ./base/sbml/xml/XMLNode.cpp:507:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T02:04:32,736     507 |   if (&stream == NULL) return;
2025-09-08T02:04:32,736         |               ^
2025-09-08T02:04:32,736   ./base/sbml/xml/XMLNode.cpp:505:34: note: ‘stream’ declared here
2025-09-08T02:04:32,736     505 | XMLNode::write (XMLOutputStream& stream) const
2025-09-08T02:04:32,736         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:32,740   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T02:04:32,740   ./base/sbml/xml/XMLNode.cpp:577:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2025-09-08T02:04:32,740     577 |   if (&xmlstr == NULL) return NULL;
2025-09-08T02:04:32,741         |               ^
2025-09-08T02:04:32,741   ./base/sbml/xml/XMLNode.cpp:575:61: note: ‘xmlstr’ declared here
2025-09-08T02:04:32,741     575 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2025-09-08T02:04:32,741         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:33,208   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T02:04:33,208   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:33,209     413 |   if (&name == NULL) return -1;
2025-09-08T02:04:33,209         |   ^~
2025-09-08T02:04:33,209   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T02:04:33,210   ./base/sbml/xml/XMLNode.cpp:507:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:33,210     507 |   if (&stream == NULL) return;
2025-09-08T02:04:33,210         |   ^~
2025-09-08T02:04:33,228   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T02:04:33,228   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:33,228     197 |   if (&rhs == NULL)
2025-09-08T02:04:33,228         |   ^~
2025-09-08T02:04:33,230   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T02:04:33,231   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:33,231     230 |   if (&(node) == NULL)
2025-09-08T02:04:33,231         |   ^~
2025-09-08T02:04:33,233   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T02:04:33,233   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:33,233     267 |   if (&(node) == NULL)
2025-09-08T02:04:33,233         |   ^~
2025-09-08T02:04:33,236   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T02:04:33,236   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:33,236     435 |   if (&other == NULL) return false;
2025-09-08T02:04:33,236         |   ^~
2025-09-08T02:04:33,239   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T02:04:33,239   ./base/sbml/xml/XMLNode.cpp:577:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:33,239     577 |   if (&xmlstr == NULL) return NULL;
2025-09-08T02:04:33,239         |   ^~
2025-09-08T02:04:39,572   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T02:04:39,572   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T02:04:39,572     220 |   if (&stream == NULL)
2025-09-08T02:04:39,572         |               ^
2025-09-08T02:04:39,572   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2025-09-08T02:04:39,572     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2025-09-08T02:04:39,572         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:39,575   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T02:04:39,575   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:39,575     236 |   if(&name == NULL) return;
2025-09-08T02:04:39,575         |            ^
2025-09-08T02:04:39,575   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2025-09-08T02:04:39,575     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2025-09-08T02:04:39,575         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:39,579   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T02:04:39,579   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:39,579     270 |   if(&triple == NULL) return;
2025-09-08T02:04:39,579         |              ^
2025-09-08T02:04:39,579   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2025-09-08T02:04:39,579     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2025-09-08T02:04:39,580         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:39,583   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T02:04:39,583   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:39,583     313 |   if (&name == NULL) return;
2025-09-08T02:04:39,583         |             ^
2025-09-08T02:04:39,583   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2025-09-08T02:04:39,583     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2025-09-08T02:04:39,583         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:39,585   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T02:04:39,585   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:39,585     344 |   if (&triple == NULL) return;
2025-09-08T02:04:39,585         |               ^
2025-09-08T02:04:39,586   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2025-09-08T02:04:39,586     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2025-09-08T02:04:39,586         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:39,587   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T02:04:39,587   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:39,588     374 |   if (&name == NULL) return;
2025-09-08T02:04:39,588         |             ^
2025-09-08T02:04:39,588   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2025-09-08T02:04:39,588     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2025-09-08T02:04:39,588         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:39,590   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T02:04:39,590   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:39,590     409 |   if (&triple == NULL) return;
2025-09-08T02:04:39,590         |               ^
2025-09-08T02:04:39,591   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2025-09-08T02:04:39,591     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2025-09-08T02:04:39,591         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:39,593   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T02:04:39,593   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:39,593     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T02:04:39,593         |              ^
2025-09-08T02:04:39,594   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2025-09-08T02:04:39,594     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T02:04:39,594         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:39,594   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:39,594     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T02:04:39,594         |                                ^
2025-09-08T02:04:39,594   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2025-09-08T02:04:39,595     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T02:04:39,595         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:39,600   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T02:04:39,600   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:39,600     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,600         |             ^
2025-09-08T02:04:39,601   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2025-09-08T02:04:39,601     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T02:04:39,601         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:39,601   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:39,601     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,601         |                               ^
2025-09-08T02:04:39,601   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2025-09-08T02:04:39,602     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T02:04:39,602         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T02:04:39,604   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T02:04:39,604   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:39,604     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:39,604         |               ^
2025-09-08T02:04:39,604   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2025-09-08T02:04:39,604     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T02:04:39,604         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:39,605   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:39,605     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:39,605         |                                 ^
2025-09-08T02:04:39,605   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2025-09-08T02:04:39,605     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T02:04:39,605         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T02:04:39,607   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T02:04:39,607   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:39,607     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,607         |             ^
2025-09-08T02:04:39,607   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2025-09-08T02:04:39,607     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T02:04:39,607         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:39,608   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:39,608     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,608         |                               ^
2025-09-08T02:04:39,608   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2025-09-08T02:04:39,608     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T02:04:39,608         |                                                           ~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:39,611   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T02:04:39,611   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:39,611     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,611         |             ^
2025-09-08T02:04:39,611   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2025-09-08T02:04:39,612     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T02:04:39,612         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:39,612   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:39,612     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,612         |                               ^
2025-09-08T02:04:39,612   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2025-09-08T02:04:39,612     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T02:04:39,613         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T02:04:39,615   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T02:04:39,615   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:39,615     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,615         |             ^
2025-09-08T02:04:39,616   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2025-09-08T02:04:39,616     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T02:04:39,616         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:39,616   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:39,616     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,616         |                               ^
2025-09-08T02:04:39,616   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2025-09-08T02:04:39,617     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T02:04:39,617         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T02:04:39,619   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T02:04:39,619   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:39,619     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:39,619         |               ^
2025-09-08T02:04:39,619   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2025-09-08T02:04:39,619     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T02:04:39,619         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:39,620   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:39,620     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:39,620         |                                 ^
2025-09-08T02:04:39,620   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2025-09-08T02:04:39,620     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T02:04:39,620         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T02:04:39,621   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T02:04:39,622   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:39,622     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,622         |             ^
2025-09-08T02:04:39,622   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2025-09-08T02:04:39,622     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T02:04:39,622         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:39,622   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:39,623     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:39,623         |                               ^
2025-09-08T02:04:39,623   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2025-09-08T02:04:39,623     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T02:04:39,623         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:39,625   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T02:04:39,625   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:39,625     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:39,625         |               ^
2025-09-08T02:04:39,626   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2025-09-08T02:04:39,626     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2025-09-08T02:04:39,626         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:39,626   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T02:04:39,626     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:39,626         |                                 ^
2025-09-08T02:04:39,626   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2025-09-08T02:04:39,627     734 |                                  , const unsigned int&  value )
2025-09-08T02:04:39,627         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:40,021   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T02:04:40,021   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,021     236 |   if(&name == NULL) return;
2025-09-08T02:04:40,021         |   ^~
2025-09-08T02:04:40,022   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T02:04:40,022   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,022     313 |   if (&name == NULL) return;
2025-09-08T02:04:40,022         |   ^~
2025-09-08T02:04:40,023   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T02:04:40,023   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,023     374 |   if (&name == NULL) return;
2025-09-08T02:04:40,023         |   ^~
2025-09-08T02:04:40,024   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T02:04:40,024   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,024     270 |   if(&triple == NULL) return;
2025-09-08T02:04:40,024         |   ^~
2025-09-08T02:04:40,025   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T02:04:40,025   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,025     344 |   if (&triple == NULL) return;
2025-09-08T02:04:40,025         |   ^~
2025-09-08T02:04:40,026   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T02:04:40,026   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,026     409 |   if (&triple == NULL) return;
2025-09-08T02:04:40,026         |   ^~
2025-09-08T02:04:40,027   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T02:04:40,027   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,027     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:40,027         |               ^
2025-09-08T02:04:40,027   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,027     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:40,027         |                                 ^
2025-09-08T02:04:40,028   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T02:04:40,028   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,028     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:40,029         |               ^
2025-09-08T02:04:40,029   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,029     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:40,029         |                                 ^
2025-09-08T02:04:40,029   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T02:04:40,030   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,030     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:40,030         |               ^
2025-09-08T02:04:40,030   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,030     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T02:04:40,030         |                                 ^
2025-09-08T02:04:40,031   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T02:04:40,031   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,031     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T02:04:40,032         |              ^
2025-09-08T02:04:40,032   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,032     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T02:04:40,032         |                                ^
2025-09-08T02:04:40,032   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T02:04:40,033   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,033     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,033         |             ^
2025-09-08T02:04:40,033   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,033     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,033         |                               ^
2025-09-08T02:04:40,034   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T02:04:40,034   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,034     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,034         |             ^
2025-09-08T02:04:40,034   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,034     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,034         |                               ^
2025-09-08T02:04:40,035   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T02:04:40,035   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,035     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,035         |             ^
2025-09-08T02:04:40,035   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,035     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,035         |                               ^
2025-09-08T02:04:40,036   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T02:04:40,036   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,036     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,036         |             ^
2025-09-08T02:04:40,036   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,037     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,037         |                               ^
2025-09-08T02:04:40,037   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T02:04:40,037   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,037     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,037         |             ^
2025-09-08T02:04:40,038   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,038     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T02:04:40,038         |                               ^
2025-09-08T02:04:40,043   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T02:04:40,043   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:40,043     220 |   if (&stream == NULL)
2025-09-08T02:04:40,043         |   ^~
2025-09-08T02:04:46,432   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T02:04:46,432   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2025-09-08T02:04:46,432     132 |   if (&chars == NULL)
2025-09-08T02:04:46,432         |              ^
2025-09-08T02:04:46,433   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2025-09-08T02:04:46,433     123 | XMLToken::XMLToken (  const std::string&  chars
2025-09-08T02:04:46,433         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:04:46,435   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T02:04:46,436   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:04:46,436     156 |   if (&orig == NULL)
2025-09-08T02:04:46,436         |             ^
2025-09-08T02:04:46,436   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2025-09-08T02:04:46,436     154 | XMLToken::XMLToken(const XMLToken& orig)
2025-09-08T02:04:46,436         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:46,439   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T02:04:46,440   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:04:46,440     195 |   if (&rhs == NULL)
2025-09-08T02:04:46,440         |            ^
2025-09-08T02:04:46,440   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2025-09-08T02:04:46,440     193 | XMLToken::operator=(const XMLToken& rhs)
2025-09-08T02:04:46,440         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:46,444   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T02:04:46,444   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T02:04:46,444     312 |         if(&attributes == NULL)
2025-09-08T02:04:46,444         |                        ^
2025-09-08T02:04:46,444   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2025-09-08T02:04:46,444     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2025-09-08T02:04:46,444         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T02:04:46,449   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T02:04:46,450   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2025-09-08T02:04:46,450     783 |         if(&namespaces == NULL)
2025-09-08T02:04:46,450         |                        ^
2025-09-08T02:04:46,450   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2025-09-08T02:04:46,450     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2025-09-08T02:04:46,450         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T02:04:46,451   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T02:04:46,451   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T02:04:46,451     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:46,451         |            ^
2025-09-08T02:04:46,451   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2025-09-08T02:04:46,452     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T02:04:46,452         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:46,452   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T02:04:46,452     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:46,452         |                               ^
2025-09-08T02:04:46,452   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2025-09-08T02:04:46,453     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T02:04:46,453         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:46,456   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T02:04:46,457   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T02:04:46,457    1058 |         if(&triple == NULL)
2025-09-08T02:04:46,457         |                    ^
2025-09-08T02:04:46,457   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2025-09-08T02:04:46,457    1055 | XMLToken::setTriple(const XMLTriple& triple)
2025-09-08T02:04:46,457         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:46,689   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T02:04:46,689   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:46,689     312 |         if(&attributes == NULL)
2025-09-08T02:04:46,689         |         ^~
2025-09-08T02:04:46,691   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T02:04:46,691   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:46,691     783 |         if(&namespaces == NULL)
2025-09-08T02:04:46,691         |         ^~
2025-09-08T02:04:46,692   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T02:04:46,692   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:46,692     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:46,692         |            ^
2025-09-08T02:04:46,692   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:46,693     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T02:04:46,693         |                               ^
2025-09-08T02:04:46,694   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T02:04:46,694   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:46,694    1058 |         if(&triple == NULL)
2025-09-08T02:04:46,694         |         ^~
2025-09-08T02:04:46,710   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T02:04:46,710   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:46,711     132 |   if (&chars == NULL)
2025-09-08T02:04:46,711         |   ^~
2025-09-08T02:04:46,712   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T02:04:46,712   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:46,712     156 |   if (&orig == NULL)
2025-09-08T02:04:46,713         |   ^~
2025-09-08T02:04:46,714   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T02:04:46,714   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:46,714     195 |   if (&rhs == NULL)
2025-09-08T02:04:46,714         |   ^~
2025-09-08T02:04:51,497   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T02:04:51,497   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T02:04:51,497     188 |   if (&element == NULL) return;
2025-09-08T02:04:51,498         |                ^
2025-09-08T02:04:51,498   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2025-09-08T02:04:51,498     186 | XMLTokenizer::startElement (const XMLToken& element)
2025-09-08T02:04:51,498         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T02:04:51,499   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T02:04:51,499   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T02:04:51,499     234 |   else if (&element != NULL)
2025-09-08T02:04:51,499         |                     ^
2025-09-08T02:04:51,500   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2025-09-08T02:04:51,500     220 | XMLTokenizer::endElement (const XMLToken& element)
2025-09-08T02:04:51,500         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T02:04:51,501   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T02:04:51,501   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2025-09-08T02:04:51,501     247 |   if (&data == NULL) return;
2025-09-08T02:04:51,501         |             ^
2025-09-08T02:04:51,501   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2025-09-08T02:04:51,501     245 | XMLTokenizer::characters (const XMLToken& data)
2025-09-08T02:04:51,501         |                           ~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:51,772   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T02:04:51,772   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:51,772     188 |   if (&element == NULL) return;
2025-09-08T02:04:51,772         |   ^~
2025-09-08T02:04:51,773   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T02:04:51,773   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:51,773     234 |   else if (&element != NULL)
2025-09-08T02:04:51,773         |        ^~
2025-09-08T02:04:51,774   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T02:04:51,774   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:51,774     247 |   if (&data == NULL) return;
2025-09-08T02:04:51,774         |   ^~
2025-09-08T02:04:54,813   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T02:04:54,813   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:04:54,813      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T02:04:54,813         |              ^
2025-09-08T02:04:54,813   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2025-09-08T02:04:54,814      58 | XMLTriple::XMLTriple (  const std::string&  name
2025-09-08T02:04:54,814         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:54,814   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T02:04:54,814      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T02:04:54,814         |                                ^
2025-09-08T02:04:54,814   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2025-09-08T02:04:54,814      59 |                       , const std::string&  uri
2025-09-08T02:04:54,815         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:54,815   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T02:04:54,815      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T02:04:54,815         |                                                     ^
2025-09-08T02:04:54,815   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2025-09-08T02:04:54,815      60 |                       , const std::string&  prefix )
2025-09-08T02:04:54,815         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T02:04:54,818   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T02:04:54,818   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2025-09-08T02:04:54,818      81 |   if (&triplet == NULL)
2025-09-08T02:04:54,818         |                ^
2025-09-08T02:04:54,818   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2025-09-08T02:04:54,818      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2025-09-08T02:04:54,819         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T02:04:54,822   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T02:04:54,822   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:04:54,822     117 |   if (&orig == NULL)
2025-09-08T02:04:54,822         |             ^
2025-09-08T02:04:54,822   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2025-09-08T02:04:54,823     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2025-09-08T02:04:54,823         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:04:54,824   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T02:04:54,824   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:04:54,824     136 |   if (&rhs == NULL)
2025-09-08T02:04:54,825         |            ^
2025-09-08T02:04:54,825   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2025-09-08T02:04:54,825     134 | XMLTriple::operator=(const XMLTriple& rhs)
2025-09-08T02:04:54,825         |                      ~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:04:54,988   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T02:04:54,988   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:54,988      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T02:04:54,988         |       ~~~~~~~^~~~~~~~
2025-09-08T02:04:54,988   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:54,989      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T02:04:54,989         |                          ~~~~~~^~~~~~~~
2025-09-08T02:04:54,989   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:54,989      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T02:04:54,989         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T02:04:54,990   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T02:04:54,990   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:54,990     117 |   if (&orig == NULL)
2025-09-08T02:04:54,990         |   ^~
2025-09-08T02:04:54,991   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T02:04:54,991   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:54,991     136 |   if (&rhs == NULL)
2025-09-08T02:04:54,991         |   ^~
2025-09-08T02:04:54,993   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T02:04:54,993   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:04:54,993      81 |   if (&triplet == NULL)
2025-09-08T02:04:54,993         |   ^~
2025-09-08T02:05:01,140   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T02:05:01,140   !!

2025-09-08T02:05:01,140           ********************************************************************************
2025-09-08T02:05:01,140           Please avoid running ``setup.py`` directly.
2025-09-08T02:05:01,140           Instead, use pypa/build, pypa/installer or other
2025-09-08T02:05:01,140           standards-based tools.

2025-09-08T02:05:01,141           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T02:05:01,141           or your builds will no longer be supported.

2025-09-08T02:05:01,141           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T02:05:01,141           ********************************************************************************

2025-09-08T02:05:01,141   !!
2025-09-08T02:05:01,141     self.initialize_options()
2025-09-08T02:05:18,155   Building wheel for python-libsbml (setup.py): finished with status 'done'
2025-09-08T02:05:18,477   Created wheel for python-libsbml: filename=python_libsbml-5.11.4-cp313-cp313-linux_armv7l.whl size=32194239 sha256=754444f02719fb0c2031d7831da0f9a201cf15ca5788b5cb80271c51d93dbe2e
2025-09-08T02:05:18,477   Stored in directory: /tmp/pip-ephem-wheel-cache-bpxl7zfv/wheels/48/68/9e/90975cd17cb7dbdb331625b203d91725912a71f343f1181e4b
2025-09-08T02:05:18,485 Successfully built python-libsbml
2025-09-08T02:05:18,551 Removed build tracker: '/tmp/pip-build-tracker-lt8801yx'