2025-09-08T02:07:41,213 Created temporary directory: /tmp/pip-build-tracker-24vcm_yq 2025-09-08T02:07:41,213 Initialized build tracking at /tmp/pip-build-tracker-24vcm_yq 2025-09-08T02:07:41,213 Created build tracker: /tmp/pip-build-tracker-24vcm_yq 2025-09-08T02:07:41,213 Entered build tracker: /tmp/pip-build-tracker-24vcm_yq 2025-09-08T02:07:41,214 Created temporary directory: /tmp/pip-wheel-540vyevt 2025-09-08T02:07:41,217 Created temporary directory: /tmp/pip-ephem-wheel-cache-vkzjn5uu 2025-09-08T02:07:41,274 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T02:07:41,277 2 location(s) to search for versions of scikit-bio: 2025-09-08T02:07:41,277 * https://pypi.org/simple/scikit-bio/ 2025-09-08T02:07:41,277 * https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T02:07:41,277 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2025-09-08T02:07:41,277 Getting page https://pypi.org/simple/scikit-bio/ 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https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2025-09-08T02:07:41,358 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2025-09-08T02:07:41,358 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2025-09-08T02:07:41,358 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2025-09-08T02:07:41,358 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2025-09-08T02:07:41,358 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2025-09-08T02:07:41,359 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2025-09-08T02:07:41,359 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2025-09-08T02:07:41,359 Found link https://files.pythonhosted.org/packages/9d/77/531cf69c99cb398c5abf8545259b88ee256bfdb72e5972bcfdbcb9942751/scikit-bio-0.6.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.0 2025-09-08T02:07:41,359 Found link https://files.pythonhosted.org/packages/12/6b/1a01f3df88503d9a11916972f0b0c2aed13d516f159336b4bdcfcd04098a/scikit-bio-0.6.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.1 2025-09-08T02:07:41,360 Found link https://files.pythonhosted.org/packages/29/28/07326aa931c67d491d3053e2875b6c8f2904e661d9ab7c2840c3ae6b3780/scikit-bio-0.6.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.2 2025-09-08T02:07:41,360 Found link https://files.pythonhosted.org/packages/65/59/31e499edc0d045acab799b7117130e9c9de22371be57ac311f2f0b235dc4/scikit-bio-0.6.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.3 2025-09-08T02:07:41,360 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/59/8b/f90ee0325c7f59573bdf8d4a5a5717ca710f067a081fd46f3768600a200d/scikit_bio-0.7.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,360 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/57/c6/0864476e63935459eb4d474f210e70ca1b0aa9689bb1beccbeae582587ce/scikit_bio-0.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,360 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/ca/087675f3fd6608142be8c53e6875a1a730e0fa1250a85421677570445839/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,360 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c8/69/da203001d9a0d4f2dc14426617e5eed76c9ff059f6c2a94023bf48e204cb/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,361 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/45/97/3b928b1f075a6033326244e125f0e3a518fe75c17278359d1835ca4ccb24/scikit_bio-0.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,361 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/66/5f238ff8fa25080d5baf82287297bfd1e6dbeab45ef3ff1b0f6e1a7c017e/scikit_bio-0.7.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,361 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f9/8b/8ef6e40a818067bdaf57fa779eadbc8ef73f333dbd50fb09daeae13de1f2/scikit_bio-0.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,361 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f0/66/6cb6e9ba1e67f65a27b34fcd33b457cb0fea73f93dc184ea1bf38562f012/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,361 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/27/e359f131018cf988f1e4f5e7380db7db43ba4202ffc9ba9e8f6cfb1988f5/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,361 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/db/99/6b0ce81f81e2cfe06c899455b149e7f8393cd3ba9a8905efe18c36894420/scikit_bio-0.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,361 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/43/9b/bf339d439568a4fa0ab6e7e545c4487b1cf86e6245f98be0d922f4677ddc/scikit_bio-0.7.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,362 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1d/e9/7a5dd2e04bbd361907f5a1942fa4b6aeecfa453801f4c047c55b51036df2/scikit_bio-0.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,362 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/19/4b/b63123cf09c3375fa90cbfc02febf32cc20429a49c03d71f37febed7c52d/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,362 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f5/02/b178ca48305a230e080732dd02233e0824b1a9b41b273acf2444de116be2/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,362 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5f/a8/199cafe05bb77bf274f0a3db8f5199f4b2966db37589f9e5ec6a212c0b9c/scikit_bio-0.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,362 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d4/31/b943fcf7d4579b4751002ad9a48e62e9f0c7db542dd440f7e3e82f50f58b/scikit_bio-0.7.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,362 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e7/af/5f3452f0dce0f0a3c7ccb9f067e410b50a8d188c4fb56426f8785317333d/scikit_bio-0.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,362 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7d/20/ef1d2a8accb946cc31b5b987a46d197f69d1e89bab76b5e9cb4235a355f9/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,363 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/46/3f05eedb58e13c21f5ab7496e9735da2f008aa66038b268ea46138a3e48d/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,363 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/40/e9/2f7d72ef933e9328b929295ada98ad2c5fbdc5b3c6bd2f4d886f14d4f90a/scikit_bio-0.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,363 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b5/fa/3a7770c445111c6b957aba701887f22506faef8145965a6b9d2816cfd896/scikit_bio-0.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,363 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4e/07/e2a29ccbb31208c98ff2c7b61b00614885f781474891ebf249d85495e238/scikit_bio-0.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,363 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/89/15/829f7da8e5083f4d2e3dd1ef24faa6b32da2bf492547bd6d385e92fda127/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,363 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4a/34/687f9e4dc73e39a56277e2aa900577fccb3c99ef28a5acc5fc258028e2ac/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,363 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6c/a5/75fd40c8bf70836216fffe57bdd80c78959d5cc21c23927ada892b246f3d/scikit_bio-0.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T02:07:41,364 Found link https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9), version: 0.7.0 2025-09-08T02:07:41,364 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T02:07:41,365 Getting page https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T02:07:41,366 Found index url https://www.piwheels.org/simple/ 2025-09-08T02:07:41,459 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2025-09-08T02:07:41,466 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv6l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,466 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv7l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,466 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,466 Skipping link: No binaries permitted for scikit-bio: 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https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp311-cp311-linux_armv6l.whl#sha256=7657b22d76cf0c3a508f91d921cbfc5431049f4477456d8b26c9a24a9ebb7190 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,467 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp311-cp311-linux_armv7l.whl#sha256=7657b22d76cf0c3a508f91d921cbfc5431049f4477456d8b26c9a24a9ebb7190 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,467 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,467 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,467 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,467 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,467 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv6l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,468 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv7l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,468 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,468 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,468 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,468 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,468 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,468 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,469 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,469 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,469 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv6l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,469 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv7l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,469 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,469 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,469 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,470 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,470 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,470 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,470 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,470 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,470 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,470 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T02:07:41,471 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T02:07:41,471 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2025-09-08T02:07:41,500 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2025-09-08T02:07:41,501 Collecting scikit-bio==0.4.0 2025-09-08T02:07:41,502 Created temporary directory: /tmp/pip-unpack-a5cowxa2 2025-09-08T02:07:41,831 Downloading scikit-bio-0.4.0.tar.gz (8.0 MB) 2025-09-08T02:07:43,799 Added scikit-bio==0.4.0 from https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-24vcm_yq' 2025-09-08T02:07:43,800 Running setup.py (path:/tmp/pip-wheel-540vyevt/scikit-bio_a120cd4ee027409281c0e18a20a40ea1/setup.py) egg_info for package scikit-bio 2025-09-08T02:07:43,800 Created temporary directory: /tmp/pip-pip-egg-info-d7sw23bj 2025-09-08T02:07:43,800 Preparing metadata (setup.py): started 2025-09-08T02:07:43,801 Running command python setup.py egg_info 2025-09-08T02:07:44,618 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T02:07:44,618 !! 2025-09-08T02:07:44,618 ******************************************************************************** 2025-09-08T02:07:44,618 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T02:07:44,618 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T02:07:44,619 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T02:07:44,619 or your builds will no longer be supported. 2025-09-08T02:07:44,619 ******************************************************************************** 2025-09-08T02:07:44,619 !! 2025-09-08T02:07:44,619 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T02:07:44,729 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T02:07:44,730 warnings.warn(msg) 2025-09-08T02:07:44,872 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T02:07:44,872 !! 2025-09-08T02:07:44,872 ******************************************************************************** 2025-09-08T02:07:44,872 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T02:07:44,872 License :: OSI Approved :: BSD License 2025-09-08T02:07:44,872 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T02:07:44,872 ******************************************************************************** 2025-09-08T02:07:44,873 !! 2025-09-08T02:07:44,873 self._finalize_license_expression() 2025-09-08T02:07:44,940 running egg_info 2025-09-08T02:07:45,006 creating /tmp/pip-pip-egg-info-d7sw23bj/scikit_bio.egg-info 2025-09-08T02:07:45,006 writing /tmp/pip-pip-egg-info-d7sw23bj/scikit_bio.egg-info/PKG-INFO 2025-09-08T02:07:45,010 writing dependency_links to /tmp/pip-pip-egg-info-d7sw23bj/scikit_bio.egg-info/dependency_links.txt 2025-09-08T02:07:45,013 writing requirements to /tmp/pip-pip-egg-info-d7sw23bj/scikit_bio.egg-info/requires.txt 2025-09-08T02:07:45,013 writing top-level names to /tmp/pip-pip-egg-info-d7sw23bj/scikit_bio.egg-info/top_level.txt 2025-09-08T02:07:45,013 writing manifest file '/tmp/pip-pip-egg-info-d7sw23bj/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T02:07:45,484 reading manifest file '/tmp/pip-pip-egg-info-d7sw23bj/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T02:07:45,485 reading manifest template 'MANIFEST.in' 2025-09-08T02:07:45,504 no previously-included directories found matching 'doc/build' 2025-09-08T02:07:45,507 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-08T02:07:45,509 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-08T02:07:45,510 adding license file 'COPYING.txt' 2025-09-08T02:07:45,530 writing manifest file '/tmp/pip-pip-egg-info-d7sw23bj/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T02:07:45,663 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T02:07:45,668 Source in /tmp/pip-wheel-540vyevt/scikit-bio_a120cd4ee027409281c0e18a20a40ea1 has version 0.4.0, which satisfies requirement scikit-bio==0.4.0 from https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz 2025-09-08T02:07:45,669 Removed scikit-bio==0.4.0 from https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-24vcm_yq' 2025-09-08T02:07:45,679 Created temporary directory: /tmp/pip-unpack-l8sh1378 2025-09-08T02:07:45,680 Created temporary directory: /tmp/pip-unpack-5x59eagp 2025-09-08T02:07:45,680 Building wheels for collected packages: scikit-bio 2025-09-08T02:07:45,682 Created temporary directory: /tmp/pip-wheel-j5c0tmp2 2025-09-08T02:07:45,682 DEPRECATION: Building 'scikit-bio' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'scikit-bio'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T02:07:45,683 Building wheel for scikit-bio (setup.py): started 2025-09-08T02:07:45,684 Destination directory: /tmp/pip-wheel-j5c0tmp2 2025-09-08T02:07:45,685 Running command python setup.py bdist_wheel 2025-09-08T02:07:46,495 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T02:07:46,495 !! 2025-09-08T02:07:46,495 ******************************************************************************** 2025-09-08T02:07:46,495 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T02:07:46,495 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T02:07:46,495 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T02:07:46,496 or your builds will no longer be supported. 2025-09-08T02:07:46,496 ******************************************************************************** 2025-09-08T02:07:46,496 !! 2025-09-08T02:07:46,496 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T02:07:46,604 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T02:07:46,605 warnings.warn(msg) 2025-09-08T02:07:46,748 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T02:07:46,749 !! 2025-09-08T02:07:46,749 ******************************************************************************** 2025-09-08T02:07:46,749 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T02:07:46,749 License :: OSI Approved :: BSD License 2025-09-08T02:07:46,749 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T02:07:46,749 ******************************************************************************** 2025-09-08T02:07:46,750 !! 2025-09-08T02:07:46,750 self._finalize_license_expression() 2025-09-08T02:07:46,761 running bdist_wheel 2025-09-08T02:07:47,031 running build 2025-09-08T02:07:47,031 running build_py 2025-09-08T02:07:47,102 creating build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T02:07:47,103 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T02:07:47,103 copying skbio/test.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T02:07:47,104 copying skbio/_base.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T02:07:47,105 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T02:07:47,105 creating build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T02:07:47,106 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T02:07:47,106 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T02:07:47,107 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T02:07:47,107 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T02:07:47,108 copying skbio/util/_decorator.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T02:07:47,108 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T02:07:47,109 creating build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T02:07:47,109 copying skbio/tree/_trie.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T02:07:47,110 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T02:07:47,111 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T02:07:47,111 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T02:07:47,112 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T02:07:47,112 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T02:07:47,113 creating build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T02:07:47,113 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T02:07:47,114 copying skbio/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T02:07:47,115 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T02:07:47,115 creating build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T02:07:47,116 copying skbio/stats/spatial.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T02:07:47,116 copying skbio/stats/power.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T02:07:47,117 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T02:07:47,118 copying skbio/stats/composition.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T02:07:47,118 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T02:07:47,119 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T02:07:47,119 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T02:07:47,120 creating build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,120 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,121 copying skbio/sequence/_rna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,122 copying skbio/sequence/_protein.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,122 copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,123 copying skbio/sequence/_iupac_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,123 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,124 copying skbio/sequence/_dna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,125 copying skbio/sequence/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,125 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T02:07:47,126 creating build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T02:07:47,126 copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T02:07:47,127 copying skbio/io/registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T02:07:47,128 copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T02:07:47,128 copying skbio/io/_iosources.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T02:07:47,129 copying skbio/io/_fileobject.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T02:07:47,129 copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T02:07:47,130 copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T02:07:47,130 creating build/lib.linux-armv7l-cpython-313/skbio/draw 2025-09-08T02:07:47,131 copying skbio/draw/_distributions.py -> build/lib.linux-armv7l-cpython-313/skbio/draw 2025-09-08T02:07:47,131 copying skbio/draw/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/draw 2025-09-08T02:07:47,132 creating build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T02:07:47,132 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T02:07:47,133 creating build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T02:07:47,133 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T02:07:47,134 copying skbio/alignment/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T02:07:47,135 copying skbio/alignment/_alignment.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T02:07:47,135 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T02:07:47,136 creating build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T02:07:47,136 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T02:07:47,137 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T02:07:47,137 copying skbio/util/tests/test_decorator.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T02:07:47,138 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T02:07:47,139 creating build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T02:07:47,139 copying skbio/tree/tests/test_trie.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T02:07:47,139 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T02:07:47,140 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T02:07:47,141 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T02:07:47,141 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T02:07:47,142 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T02:07:47,142 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T02:07:47,143 copying skbio/stats/tests/test_spatial.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T02:07:47,143 copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T02:07:47,144 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T02:07:47,145 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T02:07:47,145 copying skbio/stats/tests/test_composition.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T02:07:47,146 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T02:07:47,147 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T02:07:47,147 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T02:07:47,148 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T02:07:47,148 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T02:07:47,149 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T02:07:47,149 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T02:07:47,150 copying skbio/stats/ordination/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T02:07:47,150 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T02:07:47,151 creating build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T02:07:47,151 copying skbio/stats/evolve/_hommola.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T02:07:47,152 copying skbio/stats/evolve/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T02:07:47,153 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T02:07:47,153 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T02:07:47,153 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T02:07:47,154 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T02:07:47,155 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T02:07:47,155 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T02:07:47,156 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T02:07:47,157 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T02:07:47,157 copying skbio/stats/ordination/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T02:07:47,158 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T02:07:47,158 creating build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T02:07:47,159 copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T02:07:47,159 copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T02:07:47,160 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T02:07:47,160 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T02:07:47,161 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T02:07:47,161 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T02:07:47,162 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T02:07:47,162 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T02:07:47,163 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T02:07:47,164 creating build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T02:07:47,164 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T02:07:47,165 copying skbio/sequence/tests/test_protein.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T02:07:47,166 copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T02:07:47,166 copying skbio/sequence/tests/test_iupac_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T02:07:47,167 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T02:07:47,167 copying skbio/sequence/tests/test_dna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T02:07:47,168 copying skbio/sequence/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T02:07:47,168 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T02:07:47,169 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T02:07:47,169 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T02:07:47,170 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T02:07:47,171 copying skbio/io/tests/test_iosources.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T02:07:47,171 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T02:07:47,172 creating build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,173 copying skbio/io/format/qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,173 copying skbio/io/format/phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,174 copying skbio/io/format/ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,174 copying skbio/io/format/newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,175 copying skbio/io/format/lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,175 copying skbio/io/format/fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,176 copying skbio/io/format/fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,177 copying skbio/io/format/emptyfile.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,177 copying skbio/io/format/clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,178 copying skbio/io/format/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,178 copying skbio/io/format/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T02:07:47,179 creating build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,179 copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,180 copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,181 copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,181 copying skbio/io/format/tests/test_newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,182 copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,182 copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,183 copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,184 copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,184 copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,185 copying skbio/io/format/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,185 copying skbio/io/format/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T02:07:47,186 creating build/lib.linux-armv7l-cpython-313/skbio/draw/tests 2025-09-08T02:07:47,186 copying skbio/draw/tests/test_distributions.py -> build/lib.linux-armv7l-cpython-313/skbio/draw/tests 2025-09-08T02:07:47,187 copying skbio/draw/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/draw/tests 2025-09-08T02:07:47,188 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T02:07:47,188 copying skbio/diversity/beta/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T02:07:47,188 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T02:07:47,189 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T02:07:47,189 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T02:07:47,190 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T02:07:47,191 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T02:07:47,191 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T02:07:47,192 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T02:07:47,192 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T02:07:47,193 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T02:07:47,193 copying skbio/diversity/beta/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T02:07:47,194 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T02:07:47,195 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T02:07:47,195 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T02:07:47,196 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T02:07:47,196 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T02:07:47,197 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T02:07:47,197 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T02:07:47,198 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T02:07:47,198 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T02:07:47,199 copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T02:07:47,199 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T02:07:47,200 copying skbio/alignment/tests/test_alignment.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T02:07:47,201 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T02:07:47,201 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T02:07:47,202 copying skbio/alignment/_lib/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T02:07:47,224 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,224 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,225 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,225 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,226 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,226 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,227 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,227 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,228 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,228 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,229 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,229 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,230 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T02:07:47,230 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,230 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,231 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,232 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,232 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,233 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,233 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,234 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,234 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,235 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,235 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,236 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,236 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,237 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,237 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,238 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,239 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,239 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,240 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T02:07:47,240 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,240 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,241 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,241 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,242 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,242 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,243 copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,243 copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,244 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,245 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,245 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,246 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,246 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,247 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,247 copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,248 copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,248 copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,249 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,249 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,250 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,250 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,251 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,252 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T02:07:47,252 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T02:07:47,252 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T02:07:47,253 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T02:07:47,253 copying skbio/io/tests/data/example_file.gz -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T02:07:47,254 copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T02:07:47,254 copying skbio/io/tests/data/example_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T02:07:47,255 copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T02:07:47,255 copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T02:07:47,256 copying skbio/io/tests/data/big5_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T02:07:47,257 creating build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,257 copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,257 copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,258 copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,258 copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,259 copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,259 copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,260 copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,260 copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,261 copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,261 copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,262 copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,262 copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,263 copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,264 copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,264 copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,265 copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,265 copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,266 copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,266 copying skbio/io/format/tests/data/qual_sequence_collection_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,267 copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,267 copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,268 copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,268 copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,269 copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,269 copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,270 copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,270 copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,271 copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,272 copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,272 copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,273 copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,273 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,274 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,274 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,275 copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,275 copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,276 copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,276 copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,277 copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,277 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,278 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,278 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,279 copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,279 copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,280 copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,280 copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,281 copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,281 copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,282 copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,282 copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,283 copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,283 copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,284 copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,285 copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,285 copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,286 copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,286 copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,287 copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,287 copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,288 copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,288 copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,289 copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,289 copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,290 copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,290 copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,291 copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,291 copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,292 copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,292 copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,293 copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,293 copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,294 copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,294 copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,295 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,295 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,296 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,296 copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,297 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,297 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,298 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,298 copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,299 copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,299 copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,300 copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,301 copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,301 copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,302 copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,302 copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,303 copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,303 copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,304 copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,304 copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,305 copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,306 copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,306 copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,307 copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,307 copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,308 copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,308 copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,309 copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,309 copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,310 copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,310 copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,311 copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,311 copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,312 copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,312 copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,313 copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,313 copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,314 copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,315 copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,315 copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,316 copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,316 copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,317 copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,317 copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,318 copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,318 copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,319 copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,319 copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,320 copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,320 copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,321 copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,321 copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,322 copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,322 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,323 copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,323 copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,324 copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,325 copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,325 copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,326 copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,326 copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,327 copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,327 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,328 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,328 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,329 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,329 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,330 copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,330 copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,331 copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,331 copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,332 copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,332 copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,333 copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,333 copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,334 copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,334 copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,335 copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,335 copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,336 copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,336 copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,337 copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,337 copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,338 copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,338 copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,339 copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,339 copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,340 copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,340 copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,341 copying skbio/io/format/tests/data/fasta_sequence_collection_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,341 copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,342 copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,342 copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,343 copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,344 copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,344 copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,345 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,345 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,346 copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,346 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,347 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,347 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,348 copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,348 copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,349 copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,349 copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,350 copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,350 copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,351 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,351 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,352 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,352 copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,353 copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,354 copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,354 copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,355 copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,355 copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,356 copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,356 copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,357 copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,357 copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,358 copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,358 copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,359 copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,359 copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,360 copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,360 copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,361 copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,361 copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,362 copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,362 copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,363 copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,363 copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,364 copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,365 copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,365 copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,366 copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,366 copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,367 copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,367 copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,368 copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,368 copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,369 copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,369 copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,370 copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,370 copying skbio/io/format/tests/data/empty -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T02:07:47,378 running build_ext 2025-09-08T02:07:47,924 building 'skbio.stats.__subsample' extension 2025-09-08T02:07:47,925 creating build/temp.linux-armv7l-cpython-313/skbio/stats 2025-09-08T02:07:47,926 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -c skbio/stats/__subsample.c -o build/temp.linux-armv7l-cpython-313/skbio/stats/__subsample.o 2025-09-08T02:07:48,373 skbio/stats/__subsample.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-08T02:07:48,375 skbio/stats/__subsample.c:1836:50: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-08T02:07:48,375 1836 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); 2025-09-08T02:07:48,375 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,375 | PyBUF_C_CONTIGUOUS 2025-09-08T02:07:48,375 skbio/stats/__subsample.c:1836:50: note: each undeclared identifier is reported only once for each function it appears in 2025-09-08T02:07:48,399 skbio/stats/__subsample.c:1876:50: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-08T02:07:48,399 1876 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); 2025-09-08T02:07:48,399 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,399 | PyBUF_F_CONTIGUOUS 2025-09-08T02:07:48,406 skbio/stats/__subsample.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-08T02:07:48,409 skbio/stats/__subsample.c:2882:29: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T02:07:48,409 2882 | if (unlikely(__pyx_v_descr->names == Py_None)) { 2025-09-08T02:07:48,409 | ^~ 2025-09-08T02:07:48,409 skbio/stats/__subsample.c:424:43: note: in definition of macro ‘unlikely’ 2025-09-08T02:07:48,410 424 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T02:07:48,410 | ^ 2025-09-08T02:07:48,413 skbio/stats/__subsample.c:2886:28: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T02:07:48,413 2886 | __pyx_t_1 = __pyx_v_descr->names; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0; 2025-09-08T02:07:48,413 | ^~ 2025-09-08T02:07:48,416 skbio/stats/__subsample.c:2904:31: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T02:07:48,417 2904 | if (unlikely(__pyx_v_descr->fields == Py_None)) { 2025-09-08T02:07:48,417 | ^~ 2025-09-08T02:07:48,417 skbio/stats/__subsample.c:424:43: note: in definition of macro ‘unlikely’ 2025-09-08T02:07:48,417 424 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T02:07:48,417 | ^ 2025-09-08T02:07:48,420 skbio/stats/__subsample.c:2908:51: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T02:07:48,420 2908 | __pyx_t_3 = __Pyx_PyDict_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 798; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; 2025-09-08T02:07:48,420 | ^~ 2025-09-08T02:07:48,428 skbio/stats/__subsample.c:3089:79: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-08T02:07:48,428 3089 | (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize); 2025-09-08T02:07:48,428 | ^~ 2025-09-08T02:07:48,441 skbio/stats/__subsample.c: In function ‘__Pyx_InitCachedConstants’: 2025-09-08T02:07:48,445 skbio/stats/__subsample.c:3841:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:07:48,445 3841 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_evan_biocore_scikit_bio_sk, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:07:48,445 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,446 In file included from /usr/include/python3.13/Python.h:101, 2025-09-08T02:07:48,446 from skbio/stats/__subsample.c:24: 2025-09-08T02:07:48,446 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:07:48,446 213 | PyCode_New( 2025-09-08T02:07:48,446 | ^~~~~~~~~~ 2025-09-08T02:07:48,451 skbio/stats/__subsample.c:3841:264: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T02:07:48,451 3841 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_evan_biocore_scikit_bio_sk, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:07:48,451 | ^~ 2025-09-08T02:07:48,451 | | 2025-09-08T02:07:48,451 | int 2025-09-08T02:07:48,451 skbio/stats/__subsample.c:78:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:07:48,451 78 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:07:48,451 | ^~~~~ 2025-09-08T02:07:48,451 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T02:07:48,452 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T02:07:48,452 | ~~~~~~~~~~^ 2025-09-08T02:07:48,456 skbio/stats/__subsample.c:3841:268: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T02:07:48,456 3841 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_evan_biocore_scikit_bio_sk, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:07:48,456 | ^~~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,456 | | 2025-09-08T02:07:48,456 | PyObject * {aka struct _object *} 2025-09-08T02:07:48,456 skbio/stats/__subsample.c:78:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:07:48,457 78 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:07:48,457 | ^~~~ 2025-09-08T02:07:48,457 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T02:07:48,457 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T02:07:48,457 | ~~~~^ 2025-09-08T02:07:48,461 skbio/stats/__subsample.c:78:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T02:07:48,461 78 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:07:48,461 | ^~~~~~~~~~ 2025-09-08T02:07:48,462 skbio/stats/__subsample.c:3841:33: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:07:48,462 3841 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_evan_biocore_scikit_bio_sk, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:07:48,462 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,462 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:07:48,462 213 | PyCode_New( 2025-09-08T02:07:48,462 | ^~~~~~~~~~ 2025-09-08T02:07:48,487 skbio/stats/__subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-08T02:07:48,493 skbio/stats/__subsample.c:4133:22: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-08T02:07:48,493 4133 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2025-09-08T02:07:48,493 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,493 | PyDict_GET_SIZE 2025-09-08T02:07:48,540 skbio/stats/__subsample.c: In function ‘__Pyx_ErrRestore’: 2025-09-08T02:07:48,545 skbio/stats/__subsample.c:4969:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:07:48,546 4969 | tmp_type = tstate->curexc_type; 2025-09-08T02:07:48,546 | ^~ 2025-09-08T02:07:48,551 skbio/stats/__subsample.c:4970:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:07:48,551 4970 | tmp_value = tstate->curexc_value; 2025-09-08T02:07:48,551 | ^~ 2025-09-08T02:07:48,556 skbio/stats/__subsample.c:4971:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:07:48,556 4971 | tmp_tb = tstate->curexc_traceback; 2025-09-08T02:07:48,556 | ^~ 2025-09-08T02:07:48,561 skbio/stats/__subsample.c:4972:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:07:48,561 4972 | tstate->curexc_type = type; 2025-09-08T02:07:48,561 | ^~ 2025-09-08T02:07:48,566 skbio/stats/__subsample.c:4973:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:07:48,566 4973 | tstate->curexc_value = value; 2025-09-08T02:07:48,566 | ^~ 2025-09-08T02:07:48,571 skbio/stats/__subsample.c:4974:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:07:48,571 4974 | tstate->curexc_traceback = tb; 2025-09-08T02:07:48,571 | ^~ 2025-09-08T02:07:48,572 skbio/stats/__subsample.c: In function ‘__Pyx_ErrFetch’: 2025-09-08T02:07:48,577 skbio/stats/__subsample.c:4985:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:07:48,577 4985 | *type = tstate->curexc_type; 2025-09-08T02:07:48,577 | ^~ 2025-09-08T02:07:48,582 skbio/stats/__subsample.c:4986:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:07:48,582 4986 | *value = tstate->curexc_value; 2025-09-08T02:07:48,582 | ^~ 2025-09-08T02:07:48,587 skbio/stats/__subsample.c:4987:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:07:48,587 4987 | *tb = tstate->curexc_traceback; 2025-09-08T02:07:48,587 | ^~ 2025-09-08T02:07:48,592 skbio/stats/__subsample.c:4988:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:07:48,592 4988 | tstate->curexc_type = 0; 2025-09-08T02:07:48,592 | ^~ 2025-09-08T02:07:48,597 skbio/stats/__subsample.c:4989:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:07:48,597 4989 | tstate->curexc_value = 0; 2025-09-08T02:07:48,597 | ^~ 2025-09-08T02:07:48,602 skbio/stats/__subsample.c:4990:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:07:48,602 4990 | tstate->curexc_traceback = 0; 2025-09-08T02:07:48,603 | ^~ 2025-09-08T02:07:48,614 skbio/stats/__subsample.c: In function ‘__Pyx_Raise’: 2025-09-08T02:07:48,619 skbio/stats/__subsample.c:5139:34: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:07:48,619 5139 | PyObject* tmp_tb = tstate->curexc_traceback; 2025-09-08T02:07:48,619 | ^~ 2025-09-08T02:07:48,625 skbio/stats/__subsample.c:5142:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:07:48,625 5142 | tstate->curexc_traceback = tb; 2025-09-08T02:07:48,625 | ^~ 2025-09-08T02:07:48,631 skbio/stats/__subsample.c: In function ‘__Pyx_CreateCodeObjectForTraceback’: 2025-09-08T02:07:48,637 skbio/stats/__subsample.c:5277:5: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:07:48,637 5277 | py_code = __Pyx_PyCode_New( 2025-09-08T02:07:48,637 | ^~~~~~~ 2025-09-08T02:07:48,637 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:07:48,637 213 | PyCode_New( 2025-09-08T02:07:48,637 | ^~~~~~~~~~ 2025-09-08T02:07:48,642 skbio/stats/__subsample.c:5291:9: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T02:07:48,642 5291 | py_line, 2025-09-08T02:07:48,643 | ^~~~~~~ 2025-09-08T02:07:48,643 | | 2025-09-08T02:07:48,643 | int 2025-09-08T02:07:48,643 skbio/stats/__subsample.c:78:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:07:48,643 78 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:07:48,643 | ^~~~~ 2025-09-08T02:07:48,643 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T02:07:48,643 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T02:07:48,643 | ~~~~~~~~~~^ 2025-09-08T02:07:48,649 skbio/stats/__subsample.c:5292:9: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T02:07:48,649 5292 | __pyx_empty_bytes /*PyObject *lnotab*/ 2025-09-08T02:07:48,649 | ^~~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,650 | | 2025-09-08T02:07:48,650 | PyObject * {aka struct _object *} 2025-09-08T02:07:48,650 skbio/stats/__subsample.c:78:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:07:48,650 78 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:07:48,650 | ^~~~ 2025-09-08T02:07:48,650 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T02:07:48,650 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T02:07:48,650 | ~~~~^ 2025-09-08T02:07:48,656 skbio/stats/__subsample.c:78:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T02:07:48,656 78 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:07:48,656 | ^~~~~~~~~~ 2025-09-08T02:07:48,656 skbio/stats/__subsample.c:5277:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:07:48,656 5277 | py_code = __Pyx_PyCode_New( 2025-09-08T02:07:48,656 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,657 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:07:48,657 213 | PyCode_New( 2025-09-08T02:07:48,657 | ^~~~~~~~~~ 2025-09-08T02:07:48,660 skbio/stats/__subsample.c: In function ‘__Pyx_AddTraceback’: 2025-09-08T02:07:48,665 skbio/stats/__subsample.c:5320:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T02:07:48,665 5320 | py_frame->f_lineno = py_line; 2025-09-08T02:07:48,665 | ^~ 2025-09-08T02:07:48,673 skbio/stats/__subsample.c: In function ‘__Pyx_PyInt_As_Py_intptr_t’: 2025-09-08T02:07:48,679 skbio/stats/__subsample.c:5561:27: error: too few arguments to function ‘_PyLong_AsByteArray’ 2025-09-08T02:07:48,679 5561 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T02:07:48,679 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,680 In file included from /usr/include/python3.13/longobject.h:107, 2025-09-08T02:07:48,680 from /usr/include/python3.13/Python.h:81: 2025-09-08T02:07:48,680 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T02:07:48,680 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T02:07:48,680 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,684 skbio/stats/__subsample.c: In function ‘__Pyx_PyInt_As_int’: 2025-09-08T02:07:48,690 skbio/stats/__subsample.c:5922:27: error: too few arguments to function ‘_PyLong_AsByteArray’ 2025-09-08T02:07:48,690 5922 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T02:07:48,690 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,691 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T02:07:48,691 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T02:07:48,691 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,695 skbio/stats/__subsample.c: In function ‘__Pyx_PyInt_As_long’: 2025-09-08T02:07:48,700 skbio/stats/__subsample.c:6043:27: error: too few arguments to function ‘_PyLong_AsByteArray’ 2025-09-08T02:07:48,701 6043 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T02:07:48,701 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,701 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T02:07:48,701 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T02:07:48,701 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:07:48,756 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T02:07:48,928 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T02:07:48,939 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T02:07:48,939 exec(compile('"'"''"'"''"'"' 2025-09-08T02:07:48,939 # This is -- a caller that pip uses to run setup.py 2025-09-08T02:07:48,939 # 2025-09-08T02:07:48,939 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T02:07:48,939 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T02:07:48,939 # - It provides a clear error message when setuptools is not installed. 2025-09-08T02:07:48,939 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T02:07:48,939 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T02:07:48,939 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T02:07:48,939 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T02:07:48,939 import os, sys, tokenize, traceback 2025-09-08T02:07:48,939 2025-09-08T02:07:48,939 try: 2025-09-08T02:07:48,939 import setuptools 2025-09-08T02:07:48,939 except ImportError: 2025-09-08T02:07:48,939 print( 2025-09-08T02:07:48,939 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T02:07:48,939 "the build environment with exception:", 2025-09-08T02:07:48,939 file=sys.stderr, 2025-09-08T02:07:48,939 ) 2025-09-08T02:07:48,939 traceback.print_exc() 2025-09-08T02:07:48,939 sys.exit(1) 2025-09-08T02:07:48,939 2025-09-08T02:07:48,939 __file__ = %r 2025-09-08T02:07:48,939 sys.argv[0] = __file__ 2025-09-08T02:07:48,939 2025-09-08T02:07:48,939 if os.path.exists(__file__): 2025-09-08T02:07:48,939 filename = __file__ 2025-09-08T02:07:48,939 with tokenize.open(__file__) as f: 2025-09-08T02:07:48,939 setup_py_code = f.read() 2025-09-08T02:07:48,939 else: 2025-09-08T02:07:48,939 filename = "" 2025-09-08T02:07:48,939 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T02:07:48,939 2025-09-08T02:07:48,939 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T02:07:48,939 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-540vyevt/scikit-bio_a120cd4ee027409281c0e18a20a40ea1/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-j5c0tmp2[/] 2025-09-08T02:07:48,940 [bold magenta]cwd[/]: /tmp/pip-wheel-540vyevt/scikit-bio_a120cd4ee027409281c0e18a20a40ea1/ 2025-09-08T02:07:48,940 Building wheel for scikit-bio (setup.py): finished with status 'error' 2025-09-08T02:07:48,940 ERROR: Failed building wheel for scikit-bio 2025-09-08T02:07:48,941 Running setup.py clean for scikit-bio 2025-09-08T02:07:48,942 Running command python setup.py clean 2025-09-08T02:07:49,804 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T02:07:49,804 !! 2025-09-08T02:07:49,804 ******************************************************************************** 2025-09-08T02:07:49,804 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T02:07:49,804 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T02:07:49,805 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T02:07:49,805 or your builds will no longer be supported. 2025-09-08T02:07:49,805 ******************************************************************************** 2025-09-08T02:07:49,805 !! 2025-09-08T02:07:49,805 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T02:07:49,912 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T02:07:49,912 warnings.warn(msg) 2025-09-08T02:07:50,054 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T02:07:50,055 !! 2025-09-08T02:07:50,055 ******************************************************************************** 2025-09-08T02:07:50,055 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T02:07:50,055 License :: OSI Approved :: BSD License 2025-09-08T02:07:50,055 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T02:07:50,055 ******************************************************************************** 2025-09-08T02:07:50,055 !! 2025-09-08T02:07:50,056 self._finalize_license_expression() 2025-09-08T02:07:50,122 running clean 2025-09-08T02:07:50,253 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T02:07:50,254 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T02:07:50,269 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T02:07:50,269 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T02:07:50,269 removing 'build' 2025-09-08T02:07:50,378 Failed to build scikit-bio 2025-09-08T02:07:50,379 ERROR: Failed to build one or more wheels 2025-09-08T02:07:50,380 Exception information: 2025-09-08T02:07:50,380 Traceback (most recent call last): 2025-09-08T02:07:50,380 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T02:07:50,380 status = _inner_run() 2025-09-08T02:07:50,380 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T02:07:50,380 return self.run(options, args) 2025-09-08T02:07:50,380 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T02:07:50,380 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T02:07:50,380 return func(self, options, args) 2025-09-08T02:07:50,380 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T02:07:50,380 raise CommandError("Failed to build one or more wheels") 2025-09-08T02:07:50,380 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T02:07:50,384 Removed build tracker: '/tmp/pip-build-tracker-24vcm_yq'