2025-09-08T02:44:46,973 Created temporary directory: /tmp/pip-build-tracker-m4fb6fdt 2025-09-08T02:44:46,974 Initialized build tracking at /tmp/pip-build-tracker-m4fb6fdt 2025-09-08T02:44:46,974 Created build tracker: /tmp/pip-build-tracker-m4fb6fdt 2025-09-08T02:44:46,974 Entered build tracker: /tmp/pip-build-tracker-m4fb6fdt 2025-09-08T02:44:46,974 Created temporary directory: /tmp/pip-wheel-dbsbiboz 2025-09-08T02:44:46,977 Created temporary directory: /tmp/pip-ephem-wheel-cache-z29axq5j 2025-09-08T02:44:47,039 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T02:44:47,042 2 location(s) to search for versions of pybedtools: 2025-09-08T02:44:47,042 * https://pypi.org/simple/pybedtools/ 2025-09-08T02:44:47,042 * https://www.piwheels.org/simple/pybedtools/ 2025-09-08T02:44:47,042 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2025-09-08T02:44:47,042 Getting page https://pypi.org/simple/pybedtools/ 2025-09-08T02:44:47,043 Found index url https://pypi.org/simple/ 2025-09-08T02:44:47,189 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2025-09-08T02:44:47,198 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2025-09-08T02:44:47,199 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2025-09-08T02:44:47,200 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2025-09-08T02:44:47,200 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2025-09-08T02:44:47,201 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2025-09-08T02:44:47,201 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2025-09-08T02:44:47,202 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2025-09-08T02:44:47,202 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2025-09-08T02:44:47,203 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2025-09-08T02:44:47,203 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2025-09-08T02:44:47,203 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2025-09-08T02:44:47,203 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2025-09-08T02:44:47,203 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2025-09-08T02:44:47,204 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2025-09-08T02:44:47,204 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2025-09-08T02:44:47,204 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2025-09-08T02:44:47,204 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2025-09-08T02:44:47,205 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2025-09-08T02:44:47,205 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2025-09-08T02:44:47,205 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2025-09-08T02:44:47,205 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2025-09-08T02:44:47,205 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2025-09-08T02:44:47,206 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2025-09-08T02:44:47,206 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2025-09-08T02:44:47,206 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2025-09-08T02:44:47,206 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2025-09-08T02:44:47,206 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2025-09-08T02:44:47,207 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2025-09-08T02:44:47,207 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2025-09-08T02:44:47,207 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2025-09-08T02:44:47,207 Found link https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.10.0 2025-09-08T02:44:47,207 Found link https://files.pythonhosted.org/packages/93/c0/593dadfc238f1980cc7e612b9035f0f2890bea2b9a745c8dabadfe9d4da0/pybedtools-0.11.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.11.0 2025-09-08T02:44:47,208 Found link https://files.pythonhosted.org/packages/89/93/5878b1eed2e0b6662002d069763025e4374c16ad3d18d8e10a9fefac7b16/pybedtools-0.12.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.12.0 2025-09-08T02:44:47,208 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2025-09-08T02:44:47,208 Getting page https://www.piwheels.org/simple/pybedtools/ 2025-09-08T02:44:47,209 Found index url https://www.piwheels.org/simple/ 2025-09-08T02:44:47,295 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2025-09-08T02:44:47,313 Skipping link: No binaries permitted for pybedtools: 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https://archive1.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv7l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2025-09-08T02:44:47,325 Skipping link: No binaries permitted for pybedtools: https://archive1.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2025-09-08T02:44:47,325 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2025-09-08T02:44:47,325 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2025-09-08T02:44:47,350 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2025-09-08T02:44:47,351 Collecting pybedtools==0.7.0 2025-09-08T02:44:47,352 Created temporary directory: /tmp/pip-unpack-ypfim45p 2025-09-08T02:44:47,696 Downloading pybedtools-0.7.0.tar.gz (12.6 MB) 2025-09-08T02:44:49,971 Added pybedtools==0.7.0 from https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-m4fb6fdt' 2025-09-08T02:44:49,972 Running setup.py (path:/tmp/pip-wheel-dbsbiboz/pybedtools_50797f58291a4e1ea2dd123d957eb2b5/setup.py) egg_info for package pybedtools 2025-09-08T02:44:49,972 Created temporary directory: /tmp/pip-pip-egg-info-b37n_odu 2025-09-08T02:44:49,972 Preparing metadata (setup.py): started 2025-09-08T02:44:49,973 Running command python setup.py egg_info 2025-09-08T02:44:50,514 /tmp/pip-wheel-dbsbiboz/pybedtools_50797f58291a4e1ea2dd123d957eb2b5/setup.py:25: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. 2025-09-08T02:44:50,514 import pkg_resources 2025-09-08T02:44:51,076 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T02:44:51,076 warnings.warn(msg) 2025-09-08T02:44:51,468 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T02:44:51,468 !! 2025-09-08T02:44:51,469 ******************************************************************************** 2025-09-08T02:44:51,469 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T02:44:51,469 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T02:44:51,469 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T02:44:51,469 ******************************************************************************** 2025-09-08T02:44:51,469 !! 2025-09-08T02:44:51,470 self._finalize_license_expression() 2025-09-08T02:44:51,543 running egg_info 2025-09-08T02:44:51,615 creating /tmp/pip-pip-egg-info-b37n_odu/pybedtools.egg-info 2025-09-08T02:44:51,615 writing /tmp/pip-pip-egg-info-b37n_odu/pybedtools.egg-info/PKG-INFO 2025-09-08T02:44:51,617 writing dependency_links to /tmp/pip-pip-egg-info-b37n_odu/pybedtools.egg-info/dependency_links.txt 2025-09-08T02:44:51,617 writing requirements to /tmp/pip-pip-egg-info-b37n_odu/pybedtools.egg-info/requires.txt 2025-09-08T02:44:51,618 writing top-level names to /tmp/pip-pip-egg-info-b37n_odu/pybedtools.egg-info/top_level.txt 2025-09-08T02:44:51,618 writing manifest file '/tmp/pip-pip-egg-info-b37n_odu/pybedtools.egg-info/SOURCES.txt' 2025-09-08T02:44:51,848 reading manifest file '/tmp/pip-pip-egg-info-b37n_odu/pybedtools.egg-info/SOURCES.txt' 2025-09-08T02:44:51,849 reading manifest template 'MANIFEST.in' 2025-09-08T02:44:51,886 warning: no previously-included files matching '__pycache__' found under directory '*' 2025-09-08T02:44:51,887 warning: no previously-included files matching '*.py[co]' found under directory '*' 2025-09-08T02:44:51,888 adding license file 'LICENSE.txt' 2025-09-08T02:44:51,899 writing manifest file '/tmp/pip-pip-egg-info-b37n_odu/pybedtools.egg-info/SOURCES.txt' 2025-09-08T02:44:52,021 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T02:44:52,026 Source in /tmp/pip-wheel-dbsbiboz/pybedtools_50797f58291a4e1ea2dd123d957eb2b5 has version 0.7.0, which satisfies requirement pybedtools==0.7.0 from https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz 2025-09-08T02:44:52,027 Removed pybedtools==0.7.0 from https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-m4fb6fdt' 2025-09-08T02:44:52,030 Created temporary directory: /tmp/pip-unpack-1yo3etfm 2025-09-08T02:44:52,031 Created temporary directory: /tmp/pip-unpack-nly1a6oh 2025-09-08T02:44:52,031 Building wheels for collected packages: pybedtools 2025-09-08T02:44:52,032 Created temporary directory: /tmp/pip-wheel-cd6uogeb 2025-09-08T02:44:52,033 DEPRECATION: Building 'pybedtools' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pybedtools'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T02:44:52,034 Building wheel for pybedtools (setup.py): started 2025-09-08T02:44:52,035 Destination directory: /tmp/pip-wheel-cd6uogeb 2025-09-08T02:44:52,035 Running command python setup.py bdist_wheel 2025-09-08T02:44:52,567 /tmp/pip-wheel-dbsbiboz/pybedtools_50797f58291a4e1ea2dd123d957eb2b5/setup.py:25: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. 2025-09-08T02:44:52,567 import pkg_resources 2025-09-08T02:44:53,147 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T02:44:53,147 warnings.warn(msg) 2025-09-08T02:44:53,525 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T02:44:53,525 !! 2025-09-08T02:44:53,525 ******************************************************************************** 2025-09-08T02:44:53,525 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T02:44:53,525 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T02:44:53,525 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T02:44:53,525 ******************************************************************************** 2025-09-08T02:44:53,526 !! 2025-09-08T02:44:53,526 self._finalize_license_expression() 2025-09-08T02:44:53,526 running bdist_wheel 2025-09-08T02:44:53,671 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2025-09-08T02:44:53,672 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-09-08T02:44:53,672 !! 2025-09-08T02:44:53,672 ******************************************************************************** 2025-09-08T02:44:53,672 With Python 2.7 end-of-life, support for building universal wheels 2025-09-08T02:44:53,672 (i.e., wheels that support both Python 2 and Python 3) 2025-09-08T02:44:53,672 is being obviated. 2025-09-08T02:44:53,672 Please discontinue using this option, or if you still need it, 2025-09-08T02:44:53,673 file an issue with pypa/setuptools describing your use case. 2025-09-08T02:44:53,673 This deprecation is overdue, please update your project and remove deprecated 2025-09-08T02:44:53,673 calls to avoid build errors in the future. 2025-09-08T02:44:53,673 ******************************************************************************** 2025-09-08T02:44:53,673 !! 2025-09-08T02:44:53,673 self.finalize_options() 2025-09-08T02:44:53,745 running build 2025-09-08T02:44:53,745 running build_py 2025-09-08T02:44:53,821 creating build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,821 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,822 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,823 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,823 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,824 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,824 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,825 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,825 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,826 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,827 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,827 copying pybedtools/__main__.py -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,828 creating build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,829 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,829 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,830 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,830 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,831 copying pybedtools/test/test_scripts.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,831 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,832 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,832 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,833 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,833 copying pybedtools/test/test1.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,834 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test 2025-09-08T02:44:53,835 creating build/lib.linux-armv7l-cpython-313/pybedtools/contrib 2025-09-08T02:44:53,835 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-313/pybedtools/contrib 2025-09-08T02:44:53,836 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-313/pybedtools/contrib 2025-09-08T02:44:53,836 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-313/pybedtools/contrib 2025-09-08T02:44:53,837 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-313/pybedtools/contrib 2025-09-08T02:44:53,837 copying pybedtools/contrib/classifier.py -> build/lib.linux-armv7l-cpython-313/pybedtools/contrib 2025-09-08T02:44:53,838 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-313/pybedtools/contrib 2025-09-08T02:44:53,838 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-313/pybedtools/contrib 2025-09-08T02:44:53,839 creating build/lib.linux-armv7l-cpython-313/pybedtools/scripts 2025-09-08T02:44:53,840 copying pybedtools/scripts/intersection_matrix.py -> build/lib.linux-armv7l-cpython-313/pybedtools/scripts 2025-09-08T02:44:53,840 copying pybedtools/scripts/__init__.py -> build/lib.linux-armv7l-cpython-313/pybedtools/scripts 2025-09-08T02:44:53,841 copying pybedtools/scripts/venn_gchart.py -> build/lib.linux-armv7l-cpython-313/pybedtools/scripts 2025-09-08T02:44:53,841 copying pybedtools/scripts/annotate.py -> build/lib.linux-armv7l-cpython-313/pybedtools/scripts 2025-09-08T02:44:53,842 copying pybedtools/scripts/intron_exon_reads.py -> build/lib.linux-armv7l-cpython-313/pybedtools/scripts 2025-09-08T02:44:53,842 copying pybedtools/scripts/venn_mpl.py -> build/lib.linux-armv7l-cpython-313/pybedtools/scripts 2025-09-08T02:44:53,843 copying pybedtools/scripts/peak_pie.py -> build/lib.linux-armv7l-cpython-313/pybedtools/scripts 2025-09-08T02:44:53,843 copying pybedtools/scripts/py_ms_example.py -> build/lib.linux-armv7l-cpython-313/pybedtools/scripts 2025-09-08T02:44:53,844 creating build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,844 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,852 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,852 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,853 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,854 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,854 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,855 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,855 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,856 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,856 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,857 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,857 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,858 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,858 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,859 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,860 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,860 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,861 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,861 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,862 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,862 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,863 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,863 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,894 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,895 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,895 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,896 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,896 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,897 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,899 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,900 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,901 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,901 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,902 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,904 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,904 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,905 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,905 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,906 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,907 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,908 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,909 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,909 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,910 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,917 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,918 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,918 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,920 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,921 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,921 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,931 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-313/pybedtools/test/data 2025-09-08T02:44:53,932 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,932 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,933 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,933 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,934 copying pybedtools/cbedtools.cxx -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,937 copying pybedtools/featurefuncs.cxx -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,939 copying pybedtools/_Window.c -> build/lib.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,942 running build_ext 2025-09-08T02:44:53,949 building 'pybedtools.cbedtools' extension 2025-09-08T02:44:53,950 creating build/temp.linux-armv7l-cpython-313/pybedtools 2025-09-08T02:44:53,950 creating build/temp.linux-armv7l-cpython-313/src 2025-09-08T02:44:53,951 arm-linux-gnueabihf-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Isrc/ -I/usr/include/python3.13 -c pybedtools/cbedtools.cxx -o build/temp.linux-armv7l-cpython-313/pybedtools/cbedtools.o 2025-09-08T02:44:56,181 In file included from pybedtools/cbedtools.cxx:256: 2025-09-08T02:44:56,181 src/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: 2025-09-08T02:44:56,181 src/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2025-09-08T02:44:56,181 92 | for (register short i = 0; i < _binLevels; ++i) { 2025-09-08T02:44:56,181 | ^ 2025-09-08T02:44:56,233 In file included from /usr/include/python3.13/Python.h:72, 2025-09-08T02:44:56,233 from pybedtools/cbedtools.cxx:16: 2025-09-08T02:44:56,234 pybedtools/cbedtools.cxx: In function ‘int __Pyx_ListComp_Append(PyObject*, PyObject*)’: 2025-09-08T02:44:56,234 /usr/include/python3.13/object.h:357:30: error: lvalue required as left operand of assignment 2025-09-08T02:44:56,234 357 | # define Py_SIZE(ob) Py_SIZE(_PyObject_CAST(ob)) 2025-09-08T02:44:56,234 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,234 pybedtools/cbedtools.cxx:669:9: note: in expansion of macro ‘Py_SIZE’ 2025-09-08T02:44:56,234 669 | Py_SIZE(list) = len+1; 2025-09-08T02:44:56,234 | ^~~~~~~ 2025-09-08T02:44:56,235 pybedtools/cbedtools.cxx: In function ‘int __Pyx_PyList_Append(PyObject*, PyObject*)’: 2025-09-08T02:44:56,235 /usr/include/python3.13/object.h:357:30: error: lvalue required as left operand of assignment 2025-09-08T02:44:56,235 357 | # define Py_SIZE(ob) Py_SIZE(_PyObject_CAST(ob)) 2025-09-08T02:44:56,235 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,235 pybedtools/cbedtools.cxx:700:9: note: in expansion of macro ‘Py_SIZE’ 2025-09-08T02:44:56,236 700 | Py_SIZE(list) = len+1; 2025-09-08T02:44:56,236 | ^~~~~~~ 2025-09-08T02:44:56,265 pybedtools/cbedtools.cxx: In function ‘int __Pyx_PyList_Extend(PyObject*, PyObject*)’: 2025-09-08T02:44:56,265 pybedtools/cbedtools.cxx:711:22: error: ‘_PyList_Extend’ was not declared in this scope; did you mean ‘PyList_Extend’? 2025-09-08T02:44:56,265 711 | PyObject* none = _PyList_Extend((PyListObject*)L, v); 2025-09-08T02:44:56,265 | ^~~~~~~~~~~~~~ 2025-09-08T02:44:56,265 | PyList_Extend 2025-09-08T02:44:56,791 pybedtools/cbedtools.cxx: In function ‘void __pyx_tp_dealloc_10pybedtools_9cbedtools_Interval(PyObject*)’: 2025-09-08T02:44:56,791 pybedtools/cbedtools.cxx:12868:45: error: ‘_PyGC_FINALIZED’ was not declared in this scope 2025-09-08T02:44:56,791 12868 | if (unlikely(Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { 2025-09-08T02:44:56,791 | ^~~~~~~~~~~~~~~ 2025-09-08T02:44:56,791 /usr/include/python3.13/object.h:335:34: error: lvalue required as increment operand 2025-09-08T02:44:56,791 335 | # define Py_REFCNT(ob) Py_REFCNT(_PyObject_CAST(ob)) 2025-09-08T02:44:56,791 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,792 pybedtools/cbedtools.cxx:12876:7: note: in expansion of macro ‘Py_REFCNT’ 2025-09-08T02:44:56,792 12876 | ++Py_REFCNT(o); 2025-09-08T02:44:56,792 | ^~~~~~~~~ 2025-09-08T02:44:56,792 /usr/include/python3.13/object.h:335:34: error: lvalue required as decrement operand 2025-09-08T02:44:56,792 335 | # define Py_REFCNT(ob) Py_REFCNT(_PyObject_CAST(ob)) 2025-09-08T02:44:56,792 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,792 pybedtools/cbedtools.cxx:12878:7: note: in expansion of macro ‘Py_REFCNT’ 2025-09-08T02:44:56,792 12878 | --Py_REFCNT(o); 2025-09-08T02:44:56,792 | ^~~~~~~~~ 2025-09-08T02:44:56,842 pybedtools/cbedtools.cxx: In function ‘void __pyx_tp_dealloc_10pybedtools_9cbedtools_IntervalIterator(PyObject*)’: 2025-09-08T02:44:56,842 pybedtools/cbedtools.cxx:13236:45: error: ‘_PyGC_FINALIZED’ was not declared in this scope 2025-09-08T02:44:56,842 13236 | if (unlikely(Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { 2025-09-08T02:44:56,842 | ^~~~~~~~~~~~~~~ 2025-09-08T02:44:56,886 pybedtools/cbedtools.cxx: In function ‘void __pyx_tp_dealloc_10pybedtools_9cbedtools_IntervalFile(PyObject*)’: 2025-09-08T02:44:56,887 pybedtools/cbedtools.cxx:13342:75: error: ‘_PyGC_FINALIZED’ was not declared in this scope 2025-09-08T02:44:56,887 13342 | if (unlikely(Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) { 2025-09-08T02:44:56,887 | ^~~~~~~~~~~~~~~ 2025-09-08T02:44:56,887 /usr/include/python3.13/object.h:335:34: error: lvalue required as increment operand 2025-09-08T02:44:56,887 335 | # define Py_REFCNT(ob) Py_REFCNT(_PyObject_CAST(ob)) 2025-09-08T02:44:56,887 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,887 pybedtools/cbedtools.cxx:13349:7: note: in expansion of macro ‘Py_REFCNT’ 2025-09-08T02:44:56,887 13349 | ++Py_REFCNT(o); 2025-09-08T02:44:56,887 | ^~~~~~~~~ 2025-09-08T02:44:56,887 /usr/include/python3.13/object.h:335:34: error: lvalue required as decrement operand 2025-09-08T02:44:56,888 335 | # define Py_REFCNT(ob) Py_REFCNT(_PyObject_CAST(ob)) 2025-09-08T02:44:56,888 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,888 pybedtools/cbedtools.cxx:13351:7: note: in expansion of macro ‘Py_REFCNT’ 2025-09-08T02:44:56,888 13351 | --Py_REFCNT(o); 2025-09-08T02:44:56,888 | ^~~~~~~~~ 2025-09-08T02:44:56,908 pybedtools/cbedtools.cxx: In function ‘int __Pyx_InitCachedConstants()’: 2025-09-08T02:44:56,908 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:56,908 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,908 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,909 pybedtools/cbedtools.cxx:13705:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,909 13705 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_cmp, 280, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,909 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,909 In file included from /usr/include/python3.13/Python.h:101: 2025-09-08T02:44:56,909 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,909 213 | PyCode_New( 2025-09-08T02:44:56,909 | ^~~~~~~~~~ 2025-09-08T02:44:56,911 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:56,911 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,911 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,911 pybedtools/cbedtools.cxx:13705:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,911 13705 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_cmp, 280, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,911 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,911 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,912 213 | PyCode_New( 2025-09-08T02:44:56,912 | ^~~~~~~~~~ 2025-09-08T02:44:56,912 pybedtools/cbedtools.cxx:13705:237: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2025-09-08T02:44:56,912 13705 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_cmp, 280, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,912 | ^~~ 2025-09-08T02:44:56,912 | | 2025-09-08T02:44:56,912 | int 2025-09-08T02:44:56,912 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,912 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,912 | ^~~~~ 2025-09-08T02:44:56,914 pybedtools/cbedtools.cxx:13705:242: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2025-09-08T02:44:56,914 13705 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_cmp, 280, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,914 | ^~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,914 | | 2025-09-08T02:44:56,914 | PyObject* {aka _object*} 2025-09-08T02:44:56,914 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,914 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,914 | ^~~~ 2025-09-08T02:44:56,916 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2025-09-08T02:44:56,916 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,916 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,916 pybedtools/cbedtools.cxx:13705:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,916 13705 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_cmp, 280, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,917 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,917 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,917 213 | PyCode_New( 2025-09-08T02:44:56,917 | ^~~~~~~~~~ 2025-09-08T02:44:56,930 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:56,930 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,931 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,931 pybedtools/cbedtools.cxx:14106:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,931 14106 | __pyx_codeobj__70 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__69, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_init, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__70)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,931 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,931 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,931 213 | PyCode_New( 2025-09-08T02:44:56,931 | ^~~~~~~~~~ 2025-09-08T02:44:56,932 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:56,933 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,933 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,933 pybedtools/cbedtools.cxx:14106:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,933 14106 | __pyx_codeobj__70 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__69, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_init, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__70)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,933 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,933 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,933 213 | PyCode_New( 2025-09-08T02:44:56,933 | ^~~~~~~~~~ 2025-09-08T02:44:56,933 pybedtools/cbedtools.cxx:14106:238: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2025-09-08T02:44:56,933 14106 | __pyx_codeobj__70 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__69, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_init, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__70)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,933 | ^~~ 2025-09-08T02:44:56,934 | | 2025-09-08T02:44:56,934 | int 2025-09-08T02:44:56,934 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,934 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,934 | ^~~~~ 2025-09-08T02:44:56,935 pybedtools/cbedtools.cxx:14106:243: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2025-09-08T02:44:56,935 14106 | __pyx_codeobj__70 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__69, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_init, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__70)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,935 | ^~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,935 | | 2025-09-08T02:44:56,935 | PyObject* {aka _object*} 2025-09-08T02:44:56,935 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,935 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,936 | ^~~~ 2025-09-08T02:44:56,937 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2025-09-08T02:44:56,937 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,937 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,937 pybedtools/cbedtools.cxx:14106:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,937 14106 | __pyx_codeobj__70 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__69, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_init, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__70)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,938 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,938 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,938 213 | PyCode_New( 2025-09-08T02:44:56,938 | ^~~~~~~~~~ 2025-09-08T02:44:56,940 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:56,941 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,941 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,941 pybedtools/cbedtools.cxx:14121:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,941 14121 | __pyx_codeobj__73 = (PyObject*)__Pyx_PyCode_New(1, 0, 7, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__72, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_str, 181, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__73)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,941 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,941 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,941 213 | PyCode_New( 2025-09-08T02:44:56,941 | ^~~~~~~~~~ 2025-09-08T02:44:56,943 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:56,943 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,943 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,943 pybedtools/cbedtools.cxx:14121:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,943 14121 | __pyx_codeobj__73 = (PyObject*)__Pyx_PyCode_New(1, 0, 7, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__72, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_str, 181, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__73)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,943 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,943 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,943 213 | PyCode_New( 2025-09-08T02:44:56,943 | ^~~~~~~~~~ 2025-09-08T02:44:56,944 pybedtools/cbedtools.cxx:14121:237: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2025-09-08T02:44:56,944 14121 | __pyx_codeobj__73 = (PyObject*)__Pyx_PyCode_New(1, 0, 7, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__72, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_str, 181, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__73)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,944 | ^~~ 2025-09-08T02:44:56,944 | | 2025-09-08T02:44:56,944 | int 2025-09-08T02:44:56,944 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,944 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,944 | ^~~~~ 2025-09-08T02:44:56,945 pybedtools/cbedtools.cxx:14121:242: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2025-09-08T02:44:56,945 14121 | __pyx_codeobj__73 = (PyObject*)__Pyx_PyCode_New(1, 0, 7, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__72, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_str, 181, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__73)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,945 | ^~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,945 | | 2025-09-08T02:44:56,946 | PyObject* {aka _object*} 2025-09-08T02:44:56,946 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,946 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,946 | ^~~~ 2025-09-08T02:44:56,947 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2025-09-08T02:44:56,947 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,948 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,948 pybedtools/cbedtools.cxx:14121:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,948 14121 | __pyx_codeobj__73 = (PyObject*)__Pyx_PyCode_New(1, 0, 7, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__72, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_str, 181, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__73)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,948 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,948 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,948 213 | PyCode_New( 2025-09-08T02:44:56,948 | ^~~~~~~~~~ 2025-09-08T02:44:56,950 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:56,950 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,951 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,951 pybedtools/cbedtools.cxx:14133:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,951 14133 | __pyx_codeobj__75 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__74, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_overlap, 708, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__75)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 708; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,951 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,951 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,951 213 | PyCode_New( 2025-09-08T02:44:56,951 | ^~~~~~~~~~ 2025-09-08T02:44:56,952 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:56,953 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,953 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,953 pybedtools/cbedtools.cxx:14133:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,953 14133 | __pyx_codeobj__75 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__74, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_overlap, 708, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__75)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 708; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,953 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,953 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,953 213 | PyCode_New( 2025-09-08T02:44:56,953 | ^~~~~~~~~~ 2025-09-08T02:44:56,953 pybedtools/cbedtools.cxx:14133:241: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2025-09-08T02:44:56,953 14133 | __pyx_codeobj__75 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__74, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_overlap, 708, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__75)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 708; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,954 | ^~~ 2025-09-08T02:44:56,954 | | 2025-09-08T02:44:56,954 | int 2025-09-08T02:44:56,954 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,954 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,954 | ^~~~~ 2025-09-08T02:44:56,955 pybedtools/cbedtools.cxx:14133:246: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2025-09-08T02:44:56,955 14133 | __pyx_codeobj__75 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__74, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_overlap, 708, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__75)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 708; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,955 | ^~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,955 | | 2025-09-08T02:44:56,955 | PyObject* {aka _object*} 2025-09-08T02:44:56,956 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,956 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,956 | ^~~~ 2025-09-08T02:44:56,957 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2025-09-08T02:44:56,957 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:56,958 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,958 pybedtools/cbedtools.cxx:14133:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:56,958 14133 | __pyx_codeobj__75 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__74, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_overlap, 708, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__75)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 708; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T02:44:56,958 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:56,958 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:56,958 213 | PyCode_New( 2025-09-08T02:44:56,958 | ^~~~~~~~~~ 2025-09-08T02:44:56,967 pybedtools/cbedtools.cxx: In function ‘PyObject* PyInit_cbedtools()’: 2025-09-08T02:44:56,967 pybedtools/cbedtools.cxx:14250:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2025-09-08T02:44:56,968 14250 | __pyx_type_10pybedtools_9cbedtools_Interval.tp_print = 0; 2025-09-08T02:44:56,968 | ^~~~~~~~ 2025-09-08T02:44:56,969 pybedtools/cbedtools.cxx:14265:55: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2025-09-08T02:44:56,969 14265 | __pyx_type_10pybedtools_9cbedtools_IntervalIterator.tp_print = 0; 2025-09-08T02:44:56,969 | ^~~~~~~~ 2025-09-08T02:44:56,970 pybedtools/cbedtools.cxx:14269:51: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2025-09-08T02:44:56,970 14269 | __pyx_type_10pybedtools_9cbedtools_IntervalFile.tp_print = 0; 2025-09-08T02:44:56,970 | ^~~~~~~~ 2025-09-08T02:44:57,043 pybedtools/cbedtools.cxx: In function ‘PyObject* __Pyx_decode_c_bytes(const char*, Py_ssize_t, Py_ssize_t, Py_ssize_t, const char*, const char*, PyObject* (*)(const char*, Py_ssize_t, const char*))’: 2025-09-08T02:44:57,043 pybedtools/cbedtools.cxx:15202:16: error: ‘PyUnicode_FromUnicode’ was not declared in this scope; did you mean ‘PyInt_FromUnicode’? 2025-09-08T02:44:57,044 15202 | return PyUnicode_FromUnicode(NULL, 0); 2025-09-08T02:44:57,044 | ^~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,044 | PyInt_FromUnicode 2025-09-08T02:44:57,071 pybedtools/cbedtools.cxx: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject***, PyObject*, PyObject**, Py_ssize_t, const char*)’: 2025-09-08T02:44:57,071 pybedtools/cbedtools.cxx:15272:22: error: ‘PyUnicode_GET_SIZE’ was not declared in this scope; did you mean ‘PyDict_GET_SIZE’? 2025-09-08T02:44:57,071 15272 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2025-09-08T02:44:57,071 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,071 | PyDict_GET_SIZE 2025-09-08T02:44:57,097 pybedtools/cbedtools.cxx:15288:26: error: ‘PyUnicode_GET_SIZE’ was not declared in this scope; did you mean ‘PyDict_GET_SIZE’? 2025-09-08T02:44:57,097 15288 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2025-09-08T02:44:57,097 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,097 | PyDict_GET_SIZE 2025-09-08T02:44:57,142 pybedtools/cbedtools.cxx: In function ‘int __Pyx_PyUnicode_Equals(PyObject*, PyObject*, int)’: 2025-09-08T02:44:57,142 pybedtools/cbedtools.cxx:84:51: error: ‘_PyUnicode_Ready’ was not declared in this scope; did you mean ‘PyUnicode_READY’? 2025-09-08T02:44:57,142 84 | 0 : _PyUnicode_Ready((PyObject *)(op))) 2025-09-08T02:44:57,142 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,142 pybedtools/cbedtools.cxx:421:43: note: in definition of macro ‘unlikely’ 2025-09-08T02:44:57,143 421 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T02:44:57,143 | ^ 2025-09-08T02:44:57,143 pybedtools/cbedtools.cxx:15421:22: note: in expansion of macro ‘__Pyx_PyUnicode_READY’ 2025-09-08T02:44:57,143 15421 | if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0)) 2025-09-08T02:44:57,143 | ^~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,150 pybedtools/cbedtools.cxx: In function ‘int __Pyx_IterFinish()’: 2025-09-08T02:44:57,150 pybedtools/cbedtools.cxx:15548:34: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:44:57,150 15548 | PyObject* exc_type = tstate->curexc_type; 2025-09-08T02:44:57,150 | ^~~~~~~~~~~ 2025-09-08T02:44:57,150 pybedtools/cbedtools.cxx:15552:33: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:44:57,150 15552 | exc_value = tstate->curexc_value; 2025-09-08T02:44:57,151 | ^~~~~~~~~~~~ 2025-09-08T02:44:57,151 pybedtools/cbedtools.cxx:15553:30: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,151 15553 | exc_tb = tstate->curexc_traceback; 2025-09-08T02:44:57,151 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,151 pybedtools/cbedtools.cxx:15554:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:44:57,151 15554 | tstate->curexc_type = 0; 2025-09-08T02:44:57,151 | ^~~~~~~~~~~ 2025-09-08T02:44:57,151 pybedtools/cbedtools.cxx:15555:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:44:57,151 15555 | tstate->curexc_value = 0; 2025-09-08T02:44:57,151 | ^~~~~~~~~~~~ 2025-09-08T02:44:57,151 pybedtools/cbedtools.cxx:15556:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,152 15556 | tstate->curexc_traceback = 0; 2025-09-08T02:44:57,152 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,154 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ExceptionSave(PyObject**, PyObject**, PyObject**)’: 2025-09-08T02:44:57,154 pybedtools/cbedtools.cxx:15618:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T02:44:57,154 15618 | *type = tstate->exc_type; 2025-09-08T02:44:57,154 | ^~~~~~~~ 2025-09-08T02:44:57,154 | exc_state 2025-09-08T02:44:57,154 pybedtools/cbedtools.cxx:15619:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T02:44:57,154 15619 | *value = tstate->exc_value; 2025-09-08T02:44:57,154 | ^~~~~~~~~ 2025-09-08T02:44:57,154 pybedtools/cbedtools.cxx:15620:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T02:44:57,155 15620 | *tb = tstate->exc_traceback; 2025-09-08T02:44:57,155 | ^~~~~~~~~~~~~ 2025-09-08T02:44:57,155 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ExceptionReset(PyObject*, PyObject*, PyObject*)’: 2025-09-08T02:44:57,155 pybedtools/cbedtools.cxx:15632:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T02:44:57,155 15632 | tmp_type = tstate->exc_type; 2025-09-08T02:44:57,155 | ^~~~~~~~ 2025-09-08T02:44:57,155 | exc_state 2025-09-08T02:44:57,155 pybedtools/cbedtools.cxx:15633:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T02:44:57,155 15633 | tmp_value = tstate->exc_value; 2025-09-08T02:44:57,155 | ^~~~~~~~~ 2025-09-08T02:44:57,155 pybedtools/cbedtools.cxx:15634:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T02:44:57,156 15634 | tmp_tb = tstate->exc_traceback; 2025-09-08T02:44:57,156 | ^~~~~~~~~~~~~ 2025-09-08T02:44:57,156 pybedtools/cbedtools.cxx:15635:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T02:44:57,156 15635 | tstate->exc_type = type; 2025-09-08T02:44:57,156 | ^~~~~~~~ 2025-09-08T02:44:57,156 | exc_state 2025-09-08T02:44:57,156 pybedtools/cbedtools.cxx:15636:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T02:44:57,156 15636 | tstate->exc_value = value; 2025-09-08T02:44:57,156 | ^~~~~~~~~ 2025-09-08T02:44:57,156 pybedtools/cbedtools.cxx:15637:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T02:44:57,157 15637 | tstate->exc_traceback = tb; 2025-09-08T02:44:57,157 | ^~~~~~~~~~~~~ 2025-09-08T02:44:57,203 pybedtools/cbedtools.cxx: In function ‘PyObject* __Pyx_CyFunction_Call(PyObject*, PyObject*, PyObject*)’: 2025-09-08T02:44:57,204 pybedtools/cbedtools.cxx:16143:16: error: ‘PyCFunction_Call’ was not declared in this scope; did you mean ‘PyCFunction_Type’? 2025-09-08T02:44:57,204 16143 | return PyCFunction_Call(func, arg, kw); 2025-09-08T02:44:57,204 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,204 | PyCFunction_Type 2025-09-08T02:44:57,229 pybedtools/cbedtools.cxx: In function ‘int __Pyx_CyFunction_init()’: 2025-09-08T02:44:57,230 pybedtools/cbedtools.cxx:16208:41: error: ‘PyCFunction_Call’ was not declared in this scope; did you mean ‘PyCFunction_Type’? 2025-09-08T02:44:57,230 16208 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2025-09-08T02:44:57,230 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,230 | PyCFunction_Type 2025-09-08T02:44:57,232 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ErrRestore(PyObject*, PyObject*, PyObject*)’: 2025-09-08T02:44:57,232 pybedtools/cbedtools.cxx:16262:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:44:57,232 16262 | tmp_type = tstate->curexc_type; 2025-09-08T02:44:57,232 | ^~~~~~~~~~~ 2025-09-08T02:44:57,232 pybedtools/cbedtools.cxx:16263:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:44:57,232 16263 | tmp_value = tstate->curexc_value; 2025-09-08T02:44:57,232 | ^~~~~~~~~~~~ 2025-09-08T02:44:57,232 pybedtools/cbedtools.cxx:16264:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,233 16264 | tmp_tb = tstate->curexc_traceback; 2025-09-08T02:44:57,233 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,233 pybedtools/cbedtools.cxx:16265:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:44:57,233 16265 | tstate->curexc_type = type; 2025-09-08T02:44:57,233 | ^~~~~~~~~~~ 2025-09-08T02:44:57,233 pybedtools/cbedtools.cxx:16266:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:44:57,233 16266 | tstate->curexc_value = value; 2025-09-08T02:44:57,233 | ^~~~~~~~~~~~ 2025-09-08T02:44:57,233 pybedtools/cbedtools.cxx:16267:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,233 16267 | tstate->curexc_traceback = tb; 2025-09-08T02:44:57,234 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,234 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ErrFetch(PyObject**, PyObject**, PyObject**)’: 2025-09-08T02:44:57,234 pybedtools/cbedtools.cxx:16278:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:44:57,234 16278 | *type = tstate->curexc_type; 2025-09-08T02:44:57,234 | ^~~~~~~~~~~ 2025-09-08T02:44:57,234 pybedtools/cbedtools.cxx:16279:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:44:57,235 16279 | *value = tstate->curexc_value; 2025-09-08T02:44:57,235 | ^~~~~~~~~~~~ 2025-09-08T02:44:57,235 pybedtools/cbedtools.cxx:16280:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,235 16280 | *tb = tstate->curexc_traceback; 2025-09-08T02:44:57,235 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,235 pybedtools/cbedtools.cxx:16281:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:44:57,235 16281 | tstate->curexc_type = 0; 2025-09-08T02:44:57,235 | ^~~~~~~~~~~ 2025-09-08T02:44:57,235 pybedtools/cbedtools.cxx:16282:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:44:57,235 16282 | tstate->curexc_value = 0; 2025-09-08T02:44:57,235 | ^~~~~~~~~~~~ 2025-09-08T02:44:57,236 pybedtools/cbedtools.cxx:16283:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,236 16283 | tstate->curexc_traceback = 0; 2025-09-08T02:44:57,236 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,239 pybedtools/cbedtools.cxx: In function ‘void __Pyx_Raise(PyObject*, PyObject*, PyObject*, PyObject*)’: 2025-09-08T02:44:57,239 pybedtools/cbedtools.cxx:16432:36: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,239 16432 | PyObject* tmp_tb = tstate->curexc_traceback; 2025-09-08T02:44:57,239 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,239 pybedtools/cbedtools.cxx:16435:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,239 16435 | tstate->curexc_traceback = tb; 2025-09-08T02:44:57,239 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,240 pybedtools/cbedtools.cxx: In function ‘int __Pyx_GetException(PyObject**, PyObject**, PyObject**)’: 2025-09-08T02:44:57,241 pybedtools/cbedtools.cxx:16451:26: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:44:57,241 16451 | local_type = tstate->curexc_type; 2025-09-08T02:44:57,241 | ^~~~~~~~~~~ 2025-09-08T02:44:57,241 pybedtools/cbedtools.cxx:16452:27: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:44:57,241 16452 | local_value = tstate->curexc_value; 2025-09-08T02:44:57,241 | ^~~~~~~~~~~~ 2025-09-08T02:44:57,241 pybedtools/cbedtools.cxx:16453:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,241 16453 | local_tb = tstate->curexc_traceback; 2025-09-08T02:44:57,241 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,241 pybedtools/cbedtools.cxx:16454:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:44:57,242 16454 | tstate->curexc_type = 0; 2025-09-08T02:44:57,242 | ^~~~~~~~~~~ 2025-09-08T02:44:57,242 pybedtools/cbedtools.cxx:16455:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T02:44:57,242 16455 | tstate->curexc_value = 0; 2025-09-08T02:44:57,242 | ^~~~~~~~~~~~ 2025-09-08T02:44:57,242 pybedtools/cbedtools.cxx:16456:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T02:44:57,242 16456 | tstate->curexc_traceback = 0; 2025-09-08T02:44:57,242 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,242 pybedtools/cbedtools.cxx:16462:26: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T02:44:57,242 16462 | if (unlikely(tstate->curexc_type)) 2025-09-08T02:44:57,243 | ^~~~~~~~~~~ 2025-09-08T02:44:57,243 pybedtools/cbedtools.cxx:421:43: note: in definition of macro ‘unlikely’ 2025-09-08T02:44:57,243 421 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T02:44:57,243 | ^ 2025-09-08T02:44:57,245 pybedtools/cbedtools.cxx:16480:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T02:44:57,245 16480 | tmp_type = tstate->exc_type; 2025-09-08T02:44:57,245 | ^~~~~~~~ 2025-09-08T02:44:57,245 | exc_state 2025-09-08T02:44:57,246 pybedtools/cbedtools.cxx:16481:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T02:44:57,246 16481 | tmp_value = tstate->exc_value; 2025-09-08T02:44:57,246 | ^~~~~~~~~ 2025-09-08T02:44:57,246 pybedtools/cbedtools.cxx:16482:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T02:44:57,246 16482 | tmp_tb = tstate->exc_traceback; 2025-09-08T02:44:57,246 | ^~~~~~~~~~~~~ 2025-09-08T02:44:57,246 pybedtools/cbedtools.cxx:16483:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T02:44:57,246 16483 | tstate->exc_type = local_type; 2025-09-08T02:44:57,246 | ^~~~~~~~ 2025-09-08T02:44:57,246 | exc_state 2025-09-08T02:44:57,247 pybedtools/cbedtools.cxx:16484:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T02:44:57,247 16484 | tstate->exc_value = local_value; 2025-09-08T02:44:57,247 | ^~~~~~~~~ 2025-09-08T02:44:57,247 pybedtools/cbedtools.cxx:16485:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T02:44:57,247 16485 | tstate->exc_traceback = local_tb; 2025-09-08T02:44:57,247 | ^~~~~~~~~~~~~ 2025-09-08T02:44:57,317 pybedtools/cbedtools.cxx: In function ‘PyObject* __Pyx_PyIter_Next2(PyObject*, PyObject*)’: 2025-09-08T02:44:57,317 pybedtools/cbedtools.cxx:16781:31: error: ‘_PyObject_NextNotImplemented’ was not declared in this scope; did you mean ‘PyObject_HashNotImplemented’? 2025-09-08T02:44:57,318 16781 | if (unlikely(iternext == &_PyObject_NextNotImplemented)) 2025-09-08T02:44:57,318 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,318 pybedtools/cbedtools.cxx:421:43: note: in definition of macro ‘unlikely’ 2025-09-08T02:44:57,318 421 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T02:44:57,318 | ^ 2025-09-08T02:44:57,321 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ExceptionSwap(PyObject**, PyObject**, PyObject**)’: 2025-09-08T02:44:57,321 pybedtools/cbedtools.cxx:16809:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T02:44:57,322 16809 | tmp_type = tstate->exc_type; 2025-09-08T02:44:57,322 | ^~~~~~~~ 2025-09-08T02:44:57,322 | exc_state 2025-09-08T02:44:57,322 pybedtools/cbedtools.cxx:16810:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T02:44:57,322 16810 | tmp_value = tstate->exc_value; 2025-09-08T02:44:57,322 | ^~~~~~~~~ 2025-09-08T02:44:57,322 pybedtools/cbedtools.cxx:16811:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T02:44:57,322 16811 | tmp_tb = tstate->exc_traceback; 2025-09-08T02:44:57,322 | ^~~~~~~~~~~~~ 2025-09-08T02:44:57,322 pybedtools/cbedtools.cxx:16812:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘exc_state’? 2025-09-08T02:44:57,322 16812 | tstate->exc_type = *type; 2025-09-08T02:44:57,323 | ^~~~~~~~ 2025-09-08T02:44:57,323 | exc_state 2025-09-08T02:44:57,323 pybedtools/cbedtools.cxx:16813:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’ 2025-09-08T02:44:57,323 16813 | tstate->exc_value = *value; 2025-09-08T02:44:57,323 | ^~~~~~~~~ 2025-09-08T02:44:57,323 pybedtools/cbedtools.cxx:16814:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’ 2025-09-08T02:44:57,323 16814 | tstate->exc_traceback = *tb; 2025-09-08T02:44:57,323 | ^~~~~~~~~~~~~ 2025-09-08T02:44:57,339 pybedtools/cbedtools.cxx: In function ‘PyCodeObject* __Pyx_CreateCodeObjectForTraceback(const char*, int, int, const char*)’: 2025-09-08T02:44:57,339 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:57,339 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:57,339 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,339 pybedtools/cbedtools.cxx:17113:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:57,339 17113 | py_code = __Pyx_PyCode_New( 2025-09-08T02:44:57,339 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,340 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:57,340 213 | PyCode_New( 2025-09-08T02:44:57,340 | ^~~~~~~~~~ 2025-09-08T02:44:57,341 pybedtools/cbedtools.cxx:70:21: warning: ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2025-09-08T02:44:57,342 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:57,342 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,342 pybedtools/cbedtools.cxx:17113:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:57,342 17113 | py_code = __Pyx_PyCode_New( 2025-09-08T02:44:57,342 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,342 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:57,342 213 | PyCode_New( 2025-09-08T02:44:57,342 | ^~~~~~~~~~ 2025-09-08T02:44:57,342 pybedtools/cbedtools.cxx:17127:9: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2025-09-08T02:44:57,342 17127 | py_line, 2025-09-08T02:44:57,342 | ^~~~~~~ 2025-09-08T02:44:57,343 | | 2025-09-08T02:44:57,343 | int 2025-09-08T02:44:57,343 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:57,343 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:57,343 | ^~~~~ 2025-09-08T02:44:57,344 pybedtools/cbedtools.cxx:17128:9: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2025-09-08T02:44:57,345 17128 | __pyx_empty_bytes /*PyObject *lnotab*/ 2025-09-08T02:44:57,345 | ^~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,345 | | 2025-09-08T02:44:57,345 | PyObject* {aka _object*} 2025-09-08T02:44:57,345 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:57,345 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:57,345 | ^~~~ 2025-09-08T02:44:57,347 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2025-09-08T02:44:57,347 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T02:44:57,347 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,347 pybedtools/cbedtools.cxx:17113:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T02:44:57,347 17113 | py_code = __Pyx_PyCode_New( 2025-09-08T02:44:57,348 | ^~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,348 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T02:44:57,348 213 | PyCode_New( 2025-09-08T02:44:57,348 | ^~~~~~~~~~ 2025-09-08T02:44:57,349 pybedtools/cbedtools.cxx: In function ‘void __Pyx_AddTraceback(const char*, int, int, const char*)’: 2025-09-08T02:44:57,349 pybedtools/cbedtools.cxx:17156:13: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T02:44:57,349 17156 | py_frame->f_lineno = py_line; 2025-09-08T02:44:57,349 | ^~ 2025-09-08T02:44:57,349 In file included from /usr/include/python3.13/Python.h:67: 2025-09-08T02:44:57,349 /usr/include/python3.13/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T02:44:57,349 22 | typedef struct _frame PyFrameObject; 2025-09-08T02:44:57,349 | ^~~~~~ 2025-09-08T02:44:57,354 pybedtools/cbedtools.cxx: In function ‘int __Pyx_PyInt_As_int(PyObject*)’: 2025-09-08T02:44:57,354 pybedtools/cbedtools.cxx:17324:46: error: too few arguments to function ‘int _PyLong_AsByteArray(PyLongObject*, unsigned char*, size_t, int, int, int)’ 2025-09-08T02:44:57,354 17324 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T02:44:57,354 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,354 17325 | bytes, sizeof(val), 2025-09-08T02:44:57,354 | ~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,355 17326 | is_little, !is_unsigned); 2025-09-08T02:44:57,355 | ~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,355 In file included from /usr/include/python3.13/longobject.h:107, 2025-09-08T02:44:57,355 from /usr/include/python3.13/Python.h:81: 2025-09-08T02:44:57,355 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T02:44:57,355 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T02:44:57,355 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,359 pybedtools/cbedtools.cxx: In function ‘CHRPOS __Pyx_PyInt_As_CHRPOS(PyObject*)’: 2025-09-08T02:44:57,359 pybedtools/cbedtools.cxx:17419:46: error: too few arguments to function ‘int _PyLong_AsByteArray(PyLongObject*, unsigned char*, size_t, int, int, int)’ 2025-09-08T02:44:57,359 17419 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T02:44:57,359 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,359 17420 | bytes, sizeof(val), 2025-09-08T02:44:57,359 | ~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,360 17421 | is_little, !is_unsigned); 2025-09-08T02:44:57,360 | ~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,360 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T02:44:57,360 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T02:44:57,360 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,364 pybedtools/cbedtools.cxx: In function ‘size_t __Pyx_PyInt_As_size_t(PyObject*)’: 2025-09-08T02:44:57,364 pybedtools/cbedtools.cxx:17514:46: error: too few arguments to function ‘int _PyLong_AsByteArray(PyLongObject*, unsigned char*, size_t, int, int, int)’ 2025-09-08T02:44:57,364 17514 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T02:44:57,364 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,364 17515 | bytes, sizeof(val), 2025-09-08T02:44:57,364 | ~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,364 17516 | is_little, !is_unsigned); 2025-09-08T02:44:57,364 | ~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,364 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T02:44:57,365 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T02:44:57,365 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,371 pybedtools/cbedtools.cxx: In function ‘long unsigned int __Pyx_PyInt_As_unsigned_long(PyObject*)’: 2025-09-08T02:44:57,371 pybedtools/cbedtools.cxx:17687:46: error: too few arguments to function ‘int _PyLong_AsByteArray(PyLongObject*, unsigned char*, size_t, int, int, int)’ 2025-09-08T02:44:57,371 17687 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T02:44:57,371 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,371 17688 | bytes, sizeof(val), 2025-09-08T02:44:57,371 | ~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,371 17689 | is_little, !is_unsigned); 2025-09-08T02:44:57,371 | ~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,372 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T02:44:57,372 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T02:44:57,372 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,375 pybedtools/cbedtools.cxx: In function ‘long int __Pyx_PyInt_As_long(PyObject*)’: 2025-09-08T02:44:57,375 pybedtools/cbedtools.cxx:17782:46: error: too few arguments to function ‘int _PyLong_AsByteArray(PyLongObject*, unsigned char*, size_t, int, int, int)’ 2025-09-08T02:44:57,375 17782 | int ret = _PyLong_AsByteArray((PyLongObject *)v, 2025-09-08T02:44:57,375 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,375 17783 | bytes, sizeof(val), 2025-09-08T02:44:57,376 | ~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,376 17784 | is_little, !is_unsigned); 2025-09-08T02:44:57,376 | ~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,376 /usr/include/python3.13/cpython/longobject.h:111:17: note: declared here 2025-09-08T02:44:57,376 111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v, 2025-09-08T02:44:57,376 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:57,994 pybedtools/cbedtools.cxx: At global scope: 2025-09-08T02:44:57,994 pybedtools/cbedtools.cxx:7940:12: warning: ‘int __pyx_pw_10pybedtools_9cbedtools_8Interval_33__nonzero__(PyObject*)’ defined but not used [-Wunused-function] 2025-09-08T02:44:57,994 7940 | static int __pyx_pw_10pybedtools_9cbedtools_8Interval_33__nonzero__(PyObject *__pyx_v_self) { 2025-09-08T02:44:57,994 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-08T02:44:58,008 error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1 2025-09-08T02:44:58,132 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T02:44:58,144 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T02:44:58,144 exec(compile('"'"''"'"''"'"' 2025-09-08T02:44:58,144 # This is -- a caller that pip uses to run setup.py 2025-09-08T02:44:58,144 # 2025-09-08T02:44:58,144 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T02:44:58,144 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T02:44:58,144 # - It provides a clear error message when setuptools is not installed. 2025-09-08T02:44:58,144 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T02:44:58,144 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T02:44:58,144 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T02:44:58,144 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T02:44:58,144 import os, sys, tokenize, traceback 2025-09-08T02:44:58,144 2025-09-08T02:44:58,144 try: 2025-09-08T02:44:58,144 import setuptools 2025-09-08T02:44:58,144 except ImportError: 2025-09-08T02:44:58,144 print( 2025-09-08T02:44:58,144 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T02:44:58,144 "the build environment with exception:", 2025-09-08T02:44:58,144 file=sys.stderr, 2025-09-08T02:44:58,144 ) 2025-09-08T02:44:58,144 traceback.print_exc() 2025-09-08T02:44:58,144 sys.exit(1) 2025-09-08T02:44:58,144 2025-09-08T02:44:58,144 __file__ = %r 2025-09-08T02:44:58,144 sys.argv[0] = __file__ 2025-09-08T02:44:58,144 2025-09-08T02:44:58,144 if os.path.exists(__file__): 2025-09-08T02:44:58,144 filename = __file__ 2025-09-08T02:44:58,144 with tokenize.open(__file__) as f: 2025-09-08T02:44:58,144 setup_py_code = f.read() 2025-09-08T02:44:58,144 else: 2025-09-08T02:44:58,144 filename = "" 2025-09-08T02:44:58,144 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T02:44:58,144 2025-09-08T02:44:58,144 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T02:44:58,144 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-dbsbiboz/pybedtools_50797f58291a4e1ea2dd123d957eb2b5/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-cd6uogeb[/] 2025-09-08T02:44:58,144 [bold magenta]cwd[/]: /tmp/pip-wheel-dbsbiboz/pybedtools_50797f58291a4e1ea2dd123d957eb2b5/ 2025-09-08T02:44:58,144 Building wheel for pybedtools (setup.py): finished with status 'error' 2025-09-08T02:44:58,145 ERROR: Failed building wheel for pybedtools 2025-09-08T02:44:58,146 Running setup.py clean for pybedtools 2025-09-08T02:44:58,146 Running command python setup.py clean 2025-09-08T02:44:58,683 /tmp/pip-wheel-dbsbiboz/pybedtools_50797f58291a4e1ea2dd123d957eb2b5/setup.py:25: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. 2025-09-08T02:44:58,684 import pkg_resources 2025-09-08T02:44:59,257 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-09-08T02:44:59,257 warnings.warn(msg) 2025-09-08T02:44:59,633 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T02:44:59,633 !! 2025-09-08T02:44:59,633 ******************************************************************************** 2025-09-08T02:44:59,633 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T02:44:59,634 License :: OSI Approved :: GNU General Public License (GPL) 2025-09-08T02:44:59,634 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T02:44:59,634 ******************************************************************************** 2025-09-08T02:44:59,634 !! 2025-09-08T02:44:59,634 self._finalize_license_expression() 2025-09-08T02:44:59,634 running clean 2025-09-08T02:44:59,765 Failed to build pybedtools 2025-09-08T02:44:59,765 ERROR: Failed to build one or more wheels 2025-09-08T02:44:59,766 Exception information: 2025-09-08T02:44:59,766 Traceback (most recent call last): 2025-09-08T02:44:59,766 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T02:44:59,766 status = _inner_run() 2025-09-08T02:44:59,766 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T02:44:59,766 return self.run(options, args) 2025-09-08T02:44:59,766 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T02:44:59,766 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T02:44:59,766 return func(self, options, args) 2025-09-08T02:44:59,766 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T02:44:59,766 raise CommandError("Failed to build one or more wheels") 2025-09-08T02:44:59,766 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T02:44:59,771 Removed build tracker: '/tmp/pip-build-tracker-m4fb6fdt'