2025-09-08T03:08:47,082 Created temporary directory: /tmp/pip-build-tracker-evojcrsa
2025-09-08T03:08:47,083 Initialized build tracking at /tmp/pip-build-tracker-evojcrsa
2025-09-08T03:08:47,083 Created build tracker: /tmp/pip-build-tracker-evojcrsa
2025-09-08T03:08:47,083 Entered build tracker: /tmp/pip-build-tracker-evojcrsa
2025-09-08T03:08:47,083 Created temporary directory: /tmp/pip-wheel-zp44vkcv
2025-09-08T03:08:47,086 Created temporary directory: /tmp/pip-ephem-wheel-cache-pkay3xp2
2025-09-08T03:08:47,146 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T03:08:47,148 2 location(s) to search for versions of iva:
2025-09-08T03:08:47,148 * https://pypi.org/simple/iva/
2025-09-08T03:08:47,148 * https://www.piwheels.org/simple/iva/
2025-09-08T03:08:47,148 Fetching project page and analyzing links: https://pypi.org/simple/iva/
2025-09-08T03:08:47,149 Getting page https://pypi.org/simple/iva/
2025-09-08T03:08:47,150 Found index url https://pypi.org/simple/
2025-09-08T03:08:47,220 Fetched page https://pypi.org/simple/iva/ as application/vnd.pypi.simple.v1+json
2025-09-08T03:08:47,222   Found link https://files.pythonhosted.org/packages/c0/d5/cd9a1cd475fad181d9d4cfe04fb3e98f693249808e5c0156f5db25c4d6f8/iva-0.11.1.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.1
2025-09-08T03:08:47,222   Found link https://files.pythonhosted.org/packages/c4/5b/46d9978ec04f4579cf0251a7867ed9770b03dd0c0a101f0ccfd08aec09e0/iva-0.11.2.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.2
2025-09-08T03:08:47,223   Found link https://files.pythonhosted.org/packages/87/36/586387e486df150c3ee56e86138050af60d8564a426925cd0b125cf63d1d/iva-0.11.3.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.3
2025-09-08T03:08:47,223   Found link https://files.pythonhosted.org/packages/bd/92/5780cbd75bf3e9997aeb80289e1398f97cc54292ab0fd2646d729ff81a10/iva-0.11.4.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.4
2025-09-08T03:08:47,223   Found link https://files.pythonhosted.org/packages/8b/96/d062a8059431e21ab9a4d7eabd64127ee5ec3a4142901e0ebd5363fb0d40/iva-0.11.5.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.5
2025-09-08T03:08:47,223   Found link https://files.pythonhosted.org/packages/73/30/0855ccf30407b0b199cf0cc313e1c8f0ed5f58f7a7e4e76b1c2560acea0c/iva-0.11.6.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.6
2025-09-08T03:08:47,224   Found link https://files.pythonhosted.org/packages/70/d0/5171f8ddb17374f500528e501a44dfd4a89b03d35fbf55079a11dc4802a5/iva-0.11.7.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.7
2025-09-08T03:08:47,224   Found link https://files.pythonhosted.org/packages/36/3b/7debbe4fcbaa98b569aea8e017f75456d1e6ff60990db6564d72d56cc3d6/iva-1.0.0.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.0
2025-09-08T03:08:47,224   Found link https://files.pythonhosted.org/packages/51/7a/583cce3f6d7aa28f104a6d2c8271a19f8fccf512ecbeaf9086ab1e9709bb/iva-1.0.1.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.1
2025-09-08T03:08:47,224   Found link https://files.pythonhosted.org/packages/85/cd/700fc82fd658a5f03b325cb0c18dcde20d58941fec6943d4306c8da85545/iva-1.0.2.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.2
2025-09-08T03:08:47,224   Found link https://files.pythonhosted.org/packages/e5/16/1e5253a1f24cf1ab783811cd0b09e28630449347c0ccd9b2bdd3e68de644/iva-1.0.3.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.3
2025-09-08T03:08:47,225   Found link https://files.pythonhosted.org/packages/2f/9a/4eeb0316e8efc47d0783936521e493e752028c778dc3853015e3c4e8c63f/iva-1.0.4.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.4
2025-09-08T03:08:47,225   Found link https://files.pythonhosted.org/packages/d1/b1/21f598b41652b2c4bbcc3fb3ae4e869ada20d7b26b9294310bcef5d63f23/iva-1.0.5.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.5
2025-09-08T03:08:47,225   Found link https://files.pythonhosted.org/packages/3d/df/f8a1d735abea19137c9a940e90c171dd14415ad1b8add912ab9886ce98a1/iva-1.0.6.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.6
2025-09-08T03:08:47,225   Found link https://files.pythonhosted.org/packages/bf/02/7a0c43f68d755458ea1dd1f2e541144cc90bc767ab2e3369d8f0e8893262/iva-1.0.8.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.8
2025-09-08T03:08:47,225   Found link https://files.pythonhosted.org/packages/5a/f8/a8ea62d810a1d9a42d93c05d8de5605b607065ed3a4cf227ec737ddbd150/iva-1.0.9.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.9
2025-09-08T03:08:47,226 Fetching project page and analyzing links: https://www.piwheels.org/simple/iva/
2025-09-08T03:08:47,226 Getting page https://www.piwheels.org/simple/iva/
2025-09-08T03:08:47,227 Found index url https://www.piwheels.org/simple/
2025-09-08T03:08:47,323 Fetched page https://www.piwheels.org/simple/iva/ as text/html
2025-09-08T03:08:47,323 Skipping link: not a file: https://www.piwheels.org/simple/iva/
2025-09-08T03:08:47,324 Skipping link: not a file: https://pypi.org/simple/iva/
2025-09-08T03:08:47,351 Given no hashes to check 1 links for project 'iva': discarding no candidates
2025-09-08T03:08:47,352 Collecting iva==1.0.1
2025-09-08T03:08:47,354   Created temporary directory: /tmp/pip-unpack-w4n201_9
2025-09-08T03:08:47,490   Downloading iva-1.0.1.tar.gz (99 kB)
2025-09-08T03:08:47,566   Added iva==1.0.1 from https://files.pythonhosted.org/packages/51/7a/583cce3f6d7aa28f104a6d2c8271a19f8fccf512ecbeaf9086ab1e9709bb/iva-1.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-evojcrsa'
2025-09-08T03:08:47,567   Running setup.py (path:/tmp/pip-wheel-zp44vkcv/iva_8e6cf38e6d5d4686a6b9d2989a8bf993/setup.py) egg_info for package iva
2025-09-08T03:08:47,567   Created temporary directory: /tmp/pip-pip-egg-info-i2xtet1n
2025-09-08T03:08:47,568   Preparing metadata (setup.py): started
2025-09-08T03:08:47,568   Running command python setup.py egg_info
2025-09-08T03:08:48,113   Cannot install because some dependencies not found.
2025-09-08T03:08:48,113   Checking dependencies found in path:
2025-09-08T03:08:48,113    NOT FOUND	kmc
2025-09-08T03:08:48,113    NOT FOUND	kmc_dump
2025-09-08T03:08:48,113    NOT FOUND	nucmer
2025-09-08T03:08:48,113    NOT FOUND	delta-filter
2025-09-08T03:08:48,113    NOT FOUND	show-coords
2025-09-08T03:08:48,114    NOT FOUND	samtools
2025-09-08T03:08:48,114    NOT FOUND	smalt
2025-09-08T03:08:48,197   ERROR: python setup.py egg_info exited with 1
2025-09-08T03:08:48,209   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2025-09-08T03:08:48,209   exec(compile('"'"''"'"''"'"'
2025-09-08T03:08:48,209   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T03:08:48,209   #
2025-09-08T03:08:48,209   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T03:08:48,209   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T03:08:48,209   # - It provides a clear error message when setuptools is not installed.
2025-09-08T03:08:48,209   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T03:08:48,209   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T03:08:48,209   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T03:08:48,209   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T03:08:48,209   import os, sys, tokenize, traceback
2025-09-08T03:08:48,209   
2025-09-08T03:08:48,209   try:
2025-09-08T03:08:48,209       import setuptools
2025-09-08T03:08:48,209   except ImportError:
2025-09-08T03:08:48,209       print(
2025-09-08T03:08:48,209           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T03:08:48,209           "the build environment with exception:",
2025-09-08T03:08:48,209           file=sys.stderr,
2025-09-08T03:08:48,209       )
2025-09-08T03:08:48,209       traceback.print_exc()
2025-09-08T03:08:48,209       sys.exit(1)
2025-09-08T03:08:48,209   
2025-09-08T03:08:48,209   __file__ = %r
2025-09-08T03:08:48,209   sys.argv[0] = __file__
2025-09-08T03:08:48,209   
2025-09-08T03:08:48,209   if os.path.exists(__file__):
2025-09-08T03:08:48,209       filename = __file__
2025-09-08T03:08:48,209       with tokenize.open(__file__) as f:
2025-09-08T03:08:48,209           setup_py_code = f.read()
2025-09-08T03:08:48,209   else:
2025-09-08T03:08:48,209       filename = "<auto-generated setuptools caller>"
2025-09-08T03:08:48,209       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T03:08:48,209   
2025-09-08T03:08:48,209   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T03:08:48,209   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-zp44vkcv/iva_8e6cf38e6d5d4686a6b9d2989a8bf993/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-i2xtet1n[/]
2025-09-08T03:08:48,209   [bold magenta]cwd[/]: /tmp/pip-wheel-zp44vkcv/iva_8e6cf38e6d5d4686a6b9d2989a8bf993/
2025-09-08T03:08:48,209   Preparing metadata (setup.py): finished with status 'error'
2025-09-08T03:08:48,210 ERROR: metadata generation failed
2025-09-08T03:08:48,215 Exception information:
2025-09-08T03:08:48,215 Traceback (most recent call last):
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata
2025-09-08T03:08:48,215     call_subprocess(
2025-09-08T03:08:48,215     ~~~~~~~~~~~~~~~^
2025-09-08T03:08:48,215         args,
2025-09-08T03:08:48,215         ^^^^^
2025-09-08T03:08:48,215     ...<2 lines>...
2025-09-08T03:08:48,215         spinner=spinner,
2025-09-08T03:08:48,215         ^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215     )
2025-09-08T03:08:48,215     ^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess
2025-09-08T03:08:48,215     raise error
2025-09-08T03:08:48,215 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2025-09-08T03:08:48,215 
2025-09-08T03:08:48,215 The above exception was the direct cause of the following exception:
2025-09-08T03:08:48,215 
2025-09-08T03:08:48,215 Traceback (most recent call last):
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T03:08:48,215     status = _inner_run()
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T03:08:48,215     return self.run(options, args)
2025-09-08T03:08:48,215            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T03:08:48,215     return func(self, options, args)
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2025-09-08T03:08:48,215     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve
2025-09-08T03:08:48,215     result = self._result = resolver.resolve(
2025-09-08T03:08:48,215                             ~~~~~~~~~~~~~~~~^
2025-09-08T03:08:48,215         collected.requirements, max_rounds=limit_how_complex_resolution_can_be
2025-09-08T03:08:48,215         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215     )
2025-09-08T03:08:48,215     ^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve
2025-09-08T03:08:48,215     state = resolution.resolve(requirements, max_rounds=max_rounds)
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve
2025-09-08T03:08:48,215     self._add_to_criteria(self.state.criteria, r, parent=None)
2025-09-08T03:08:48,215     ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria
2025-09-08T03:08:48,215     if not criterion.candidates:
2025-09-08T03:08:48,215            ^^^^^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__
2025-09-08T03:08:48,215     return bool(self._sequence)
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__
2025-09-08T03:08:48,215     self._bool = any(self)
2025-09-08T03:08:48,215                  ~~~^^^^^^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in <genexpr>
2025-09-08T03:08:48,215     return (c for c in iterator if id(c) not in self._incompatible_ids)
2025-09-08T03:08:48,215                        ^^^^^^^^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built
2025-09-08T03:08:48,215     candidate = func()
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link
2025-09-08T03:08:48,215     base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
2025-09-08T03:08:48,215                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-08T03:08:48,215         link, template, name, version
2025-09-08T03:08:48,215         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215     )
2025-09-08T03:08:48,215     ^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link
2025-09-08T03:08:48,215     self._link_candidate_cache[link] = LinkCandidate(
2025-09-08T03:08:48,215                                        ~~~~~~~~~~~~~^
2025-09-08T03:08:48,215         link,
2025-09-08T03:08:48,215         ^^^^^
2025-09-08T03:08:48,215     ...<3 lines>...
2025-09-08T03:08:48,215         version=version,
2025-09-08T03:08:48,215         ^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215     )
2025-09-08T03:08:48,215     ^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__
2025-09-08T03:08:48,215     super().__init__(
2025-09-08T03:08:48,215     ~~~~~~~~~~~~~~~~^
2025-09-08T03:08:48,215         link=link,
2025-09-08T03:08:48,215         ^^^^^^^^^^
2025-09-08T03:08:48,215     ...<4 lines>...
2025-09-08T03:08:48,215         version=version,
2025-09-08T03:08:48,215         ^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215     )
2025-09-08T03:08:48,215     ^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__
2025-09-08T03:08:48,215     self.dist = self._prepare()
2025-09-08T03:08:48,215                 ~~~~~~~~~~~~~^^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare
2025-09-08T03:08:48,215     dist = self._prepare_distribution()
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution
2025-09-08T03:08:48,215     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2025-09-08T03:08:48,215            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement
2025-09-08T03:08:48,215     return self._prepare_linked_requirement(req, parallel_builds)
2025-09-08T03:08:48,215            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement
2025-09-08T03:08:48,215     dist = _get_prepared_distribution(
2025-09-08T03:08:48,215         req,
2025-09-08T03:08:48,215     ...<3 lines>...
2025-09-08T03:08:48,215         self.check_build_deps,
2025-09-08T03:08:48,215     )
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution
2025-09-08T03:08:48,215     abstract_dist.prepare_distribution_metadata(
2025-09-08T03:08:48,215     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-08T03:08:48,215         finder, build_isolation, check_build_deps
2025-09-08T03:08:48,215         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215     )
2025-09-08T03:08:48,215     ^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata
2025-09-08T03:08:48,215     self.req.prepare_metadata()
2025-09-08T03:08:48,215     ~~~~~~~~~~~~~~~~~~~~~~~~~^^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata
2025-09-08T03:08:48,215     self.metadata_directory = generate_metadata_legacy(
2025-09-08T03:08:48,215                               ~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-08T03:08:48,215         build_env=self.build_env,
2025-09-08T03:08:48,215         ^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215     ...<3 lines>...
2025-09-08T03:08:48,215         details=details,
2025-09-08T03:08:48,215         ^^^^^^^^^^^^^^^^
2025-09-08T03:08:48,215     )
2025-09-08T03:08:48,215     ^
2025-09-08T03:08:48,215   File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata
2025-09-08T03:08:48,215     raise MetadataGenerationFailed(package_details=details) from error
2025-09-08T03:08:48,215 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2025-09-08T03:08:48,239 Removed iva==1.0.1 from https://files.pythonhosted.org/packages/51/7a/583cce3f6d7aa28f104a6d2c8271a19f8fccf512ecbeaf9086ab1e9709bb/iva-1.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-evojcrsa'
2025-09-08T03:08:48,239 Removed build tracker: '/tmp/pip-build-tracker-evojcrsa'