2025-09-08T02:51:52,485 Created temporary directory: /tmp/pip-build-tracker-b6qhcn02
2025-09-08T02:51:52,485 Initialized build tracking at /tmp/pip-build-tracker-b6qhcn02
2025-09-08T02:51:52,486 Created build tracker: /tmp/pip-build-tracker-b6qhcn02
2025-09-08T02:51:52,486 Entered build tracker: /tmp/pip-build-tracker-b6qhcn02
2025-09-08T02:51:52,486 Created temporary directory: /tmp/pip-wheel-xmkv86r0
2025-09-08T02:51:52,489 Created temporary directory: /tmp/pip-ephem-wheel-cache-vnbyr_os
2025-09-08T02:51:52,545 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T02:51:52,547 2 location(s) to search for versions of python-libsbml:
2025-09-08T02:51:52,547 * https://pypi.org/simple/python-libsbml/
2025-09-08T02:51:52,547 * https://www.piwheels.org/simple/python-libsbml/
2025-09-08T02:51:52,547 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2025-09-08T02:51:52,548 Getting page https://pypi.org/simple/python-libsbml/
2025-09-08T02:51:52,549 Found index url https://pypi.org/simple/
2025-09-08T02:51:52,716 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2025-09-08T02:51:52,789   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2025-09-08T02:51:52,790   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2025-09-08T02:51:52,790   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2025-09-08T02:51:52,790   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2025-09-08T02:51:52,791   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2025-09-08T02:51:52,791   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,791   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2025-09-08T02:51:52,791   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,791   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,793   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,793   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,793   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,793   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,793   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,793   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,793   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,794   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,794   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,794   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,794   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,794   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,794   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,794   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,795   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,795   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,795   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,795   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,795   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,795   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,795   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,796   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,796   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,796   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,796   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,796   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,796   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2025-09-08T02:51:52,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,797   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2025-09-08T02:51:52,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,801   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2025-09-08T02:51:52,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,804   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2025-09-08T02:51:52,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,807   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2025-09-08T02:51:52,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,813   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2025-09-08T02:51:52,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,818   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2025-09-08T02:51:52,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,839   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2025-09-08T02:51:52,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,839   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,840   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,841   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,842   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,843   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,844   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,845   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,846   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2025-09-08T02:51:52,846   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,847   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,848   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,849   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,850   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,851   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,852   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,853   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2025-09-08T02:51:52,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,853   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,854   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,855   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,856   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,857   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,858   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,859   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,860   Found link https://files.pythonhosted.org/packages/b5/47/7a6063cb8de95b786a93ad3cef3760a72ca2f344db333c1694b7abd228b7/python-libsbml-5.20.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.2
2025-09-08T02:51:52,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/04/26903a22496521f7d74ba196d9cc5657ed9349c68deb29766081d9e50414/python_libsbml-5.20.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3d/45/98defd138e1901f301b49dd88290617a1d9d9d0e8e595ab515380429773a/python_libsbml-5.20.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,860   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/c6/2e18caa75409aa36d434f9d166f8624d9b7b8be63f959a9598bffa504e3d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/8f/2e6b389d653ab757abc10231f6e31f842fc3443c03429243d583134a88b6/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/7f/6788f019fd747df56978e3e76a871541e1986fc32fbad7f9b2d1a044125d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/91/dabd7be439071b41738e023671cefb6585bc5c5c87412462355615d51529/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/53/ac/3a753b37ce8d257b7d15d011368b99595a533d409c6d1e576d8b2e4e95f0/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/3a/f45a1ce0190e30a3445cf8084e127f09607746dc1ae6af1897a33bfacaac/python_libsbml-5.20.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/9991bb8e94f9bdec1429634355471845a6a3dd1cd87ef25b414c8e6f4525/python_libsbml-5.20.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,861   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/3f/61a99c450a4cce58ac209f73489a899d771e575a0cd4c78af239d087d51a/python_libsbml-5.20.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/76/be1c1d1d631048857c1251385f1ea4e98434ac51292df86bfefc95c75f31/python_libsbml-5.20.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/63/d668630e42dacce62517fd5e12f220813057a29e50fca69d9009fac89332/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/74/e38a3ff2e270458108a7ff73df4017320634ba58af0dce728f74910bddc0/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/65/0040257a7dac93d053643baa798919df5368c19b661699e03a11897ab5f9/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/57/0e/650eb72f69d0d77b11bb85bf5f533ab8561910fd263cab7ba1bc08a2fc5e/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c5/3ac9cf395c7ff268eebc649dd0a8d540772c5ab516e2ac9fc45cad43f8b7/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,862   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/e5/331030fb11adce42e0920dd66451dbd78794d53bc4d3b4bb42e88f59d78b/python_libsbml-5.20.2-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/45/d6188b56f4928a1ba7a1f55ee0153ab7e8b03f4538a6235c2cd95a3d1a07/python_libsbml-5.20.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/22/58/3e9ffea465efca2b604e3d9a05e599d4bf3034f9bed3a11647821e1281b0/python_libsbml-5.20.2-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ed/7c/07e507837f43eeffc97b7a3d0e2f975c53455cbdfbf75ab0a207ae286173/python_libsbml-5.20.2-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/db/96d432ed90795b06677cb2fb1173ada6af6bb8b490889994edfb7d459484/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/72/6d50597e242f809325d800e5298f914b1502f005f9250f5ed1924b91201d/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/51/c34bb7e4cf57e935b245769fe43953b10e8275a5254964bd77c6c24a2909/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,863   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/92/6705ad6d9f565efcc903f2e05c525fab20e041637d58789e64e75ce554f4/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/3e/f4e038e6eda9583dbc301655feca81fffe7e47d2472d1aa3994ced906fcf/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/05/19694615bdbce9662022a7e4cb1c9a32827e2b6333369d82fc229b570be4/python_libsbml-5.20.2-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/dc/ce7fd468c172856d691c02cabd70869fd0cf096ef27514b1926a4f985006/python_libsbml-5.20.2-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/74/218dd9f207049d9bc314f4e721edac2b542a73275db7acf599372086152a/python_libsbml-5.20.2-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/3b/08a0aea25adae6be135f663849c3877fc7766501ee7b0f2765699b9c6661/python_libsbml-5.20.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e6/1b/d623d8731b75797ac27d51a408f785b84b1fef320b0bf25cbe5e156dc53b/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/fe/f1df672a5ee732cd2d137672d2deafe97c0677670e928d4c225071f8c079/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,864   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/da/3631b93a3326fe174ee1507d113a4f3b5d3e62ebe5d717ddadb2725c726d/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/56/c6cdf2f7913be720110279b1c1c0f12fdc8ddf1b4494798d35ba78afe0b5/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/95/e3b6b579c4942a6f2e476454cc18c3f8bd703eac1741aed2e8d1a000d892/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/6f/c1e9afda82db0e6243e9e11c95a2e8276e59669b129cffc1e788b56baac4/python_libsbml-5.20.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/88/bb18a417cafaffecf7545454eaf8d66ea505b050146780d04584429d09ef/python_libsbml-5.20.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/c8/350c41479d55ba7faa7684a47470aad4d7a64187e13fffb63bdf64f1c6b1/python_libsbml-5.20.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fa/28/920e87bd0ac86ce4fa39405e04531b5aef65e81bd2692cf6d32d74ab1f6e/python_libsbml-5.20.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,865   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/52/34006a61844de53a1343e6424bcbfbfba7a69ecf604e298b09719cf3f776/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/51/06c2893ae9924ab7ab969438354397180c15517381e2407ffeee01f2ffd1/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/a8/f692640f8dd26dd80b5b1e52d35288cd66dce3aef45ce33389b4908b8a96/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/9a/a23ed03cc9843587c159ed7dfe87a0fc5981620a8c4239d0b7cb5d1ced3d/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/dd/5ba423e743e6a1248f7a260addd96ae0ed8877a9d3fc673cc9fc04d1e583/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/2e/1aa54758d80c73dcad2ac7be72f94c2e6a80231e41cc4f181e756c312ff8/python_libsbml-5.20.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/e9/3aa778c48058f73596a284c9da221edb0f4064fd0c6718c5a2b090376291/python_libsbml-5.20.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/3e/40f8ddd356ac0da9d7a68f7e76fe2d1f1b6e493ac1d7d84e85c7db0a5151/python_libsbml-5.20.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,866   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/8e/412f7feb28529a9d74f2f268d19e339215453b2ddc403fa722543327e9c4/python_libsbml-5.20.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/c1/b6224136f86d061d660706b6baff0aca9c5b93b9065b27ce5e60679b8c32/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/a9/d826781ff9cba1fc25819f0b0784190fb0aed6cedd017f6d275203fa9f20/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/d6/f81f1223273281bf4926750f7ffe3ce8e4b7b6b03456fe9fe40e1d48ce9f/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/78/bcbfa20734ed0b28b76f9237f4ff8fc786d8e97d43d402bcb06e39f3d7e9/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/f0/8a9d7920dce46184777baa3b5b368ebf09de0a6c4408def6d33797aff2fc/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/36/4df59c750ded7484a98b90b3265d884b993c1eb636c394885c5fdaa54c88/python_libsbml-5.20.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,867   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/65/9dae381f8856cd9bc8b84282ce79179a410ae56468120935b592168425f0/python_libsbml-5.20.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/c7/e8b736a73a77b9f445bf4ab3d21e944f5c3b9fe09b4e13545458bfa3032f/python_libsbml-5.20.2-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/94/991c7ca6a639d5dde00928ed1b1be8afeba72c1afd54b229f47b55bbfab9/python_libsbml-5.20.2-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/fc/79e5a26756c3e7d93085b18d2cc4dcf6aa083a3bd9a6929829ee0dc2fd53/python_libsbml-5.20.2-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/c1/1cc74cd93fdd9a80f280fed49ac11860d493cf0b00f5ae423dec0c56ed55/python_libsbml-5.20.2-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/16/ca/572dd53742081b13f59f57a4f114d6fd32ee177cf7cff45eadc38b26e70e/python_libsbml-5.20.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/16/b92b5d1607b08b29df6636cef1d3d0c4e6ab0a7af8abc858e6564c1750a4/python_libsbml-5.20.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,868   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/14/60557f93f37dbdd0a58796e0fd832b6cc3e8194caaadc7a4e78d83ef15e6/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/91/968a70814dceb1a1002c313ac80de94c6515c6ed9d580d569371581ec549/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/3f/b7bb4c06c4de558a71117a18d5e59f30f0719e43244c7e0e9010370eff11/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/33/78752be98d7cb891266d15758057efc3ac392ffa5203a2947506fa15856f/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/20/429e411767983fd38d520470acf8c34d08299d25bf05e6456210796256a3/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/0f/558289f95919730d7e341337b14d880c89912277550f03a3f78e585706b3/python_libsbml-5.20.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/5a/f435f7a12f11f1cc8cf505452814f21cde6ef6d8e2f75a4a323ab47bd0da/python_libsbml-5.20.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,869   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/5a/9b2d31a91f5e94ff44bca259fb8ea57dab7e2cadd66d54888dedbd7efdb7/python_libsbml-5.20.4-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/e4/79a57f56cc0fcb9ccf74a480a2102a5b91109958fbd830f92c2e6435e905/python_libsbml-5.20.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/a7/18dbc2129f0187cb00404de81ff51fd7a907a11dedfed28c10d3b03eac32/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/91/53c5c6a005eb529fc844ef5cc6f079cd85070d2a2e96227cd3644eceec88/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/4b/f11aab01f1483ca770ef7af61a41005a1fc5a3b1004c097b0a92e7046e61/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/7f/57e791cf4495ba2e8e07386ee070373eb925cbb7ffb80f4dc2db42e1f7ac/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/13/a97e56c822875a7ea616277e1801e2bea3f536ecbb292297cf947bb11bee/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/24/53784997e5bae3def9e6279fdc71c70c59e4efeea8a31adce5816778d2e1/python_libsbml-5.20.4-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,870   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/15/bd/6838154413a83a8f6dc5b60bafd80ba73f1554c47c99f39cfe958c64d907/python_libsbml-5.20.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/6c/43a8b4e49ac8885d9a9ae856c8a442864d987a40e82b32358ea718a75441/python_libsbml-5.20.4-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4d/3bad65cbb54ba14d5d983874d47d2352efe6f45cd737573d64d6091980ba/python_libsbml-5.20.4-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/db/3f9f75d42106144df9cec628a4c9f24a024256372f7155f24f4608932c14/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/0a/a0ac99ea56235166b5441bd9c605fbbfa5130f8611a725da6368d628d4a4/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/d3/9db568a391f82ec47da42ae557f3e429acfee6364b205a06ae2ccb602af1/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/b2/3dae1e7f2d5742f1b9aae565aea55d2a978059c324a891a9bfd921b75024/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/48/79f5737c66329717f1c98f7ffad4af5bcf053477ef76f4e65c71b20c573e/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/28/b5049445492235606844c1d8e88317bd0545417ce1c268a4c34f98946d3a/python_libsbml-5.20.4-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/ee/4bbb01a4c7ce916fc2f26d836aa5aa0e3a90f9e526f8d6effefdf06079bc/python_libsbml-5.20.4-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/25/ec5b2921781757dbfc030f6b4502580662e156223f1358676858a27cf9b9/python_libsbml-5.20.4-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/28/cbd7a16304666555af50adafceb85796c633fecee649e72f2fef8b34d296/python_libsbml-5.20.4-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7c/1db267adce246d8b18d46d80a4cd4efb8ee0f56eb25d42e4a4a27474166c/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/78/5dd03cddfaa1a2ed43b32b984135b8fe0469835eaaf3a432224fc2347862/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5c/c4/800ff7ccb91390d67eca1bf4e5fd479f201e849bd4ac6aee39782f395127/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/ac/d6607f3ce489b82b4a51f86172b48ae6c4d8f278fa46fd4117fffe6097c0/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/17/0a4504d7851a8b6ad704148e72e00d4fcd8172a7e4b02b09f521632ceb35/python_libsbml-5.20.4-cp313-cp313-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/80/bf/e94a0cee6f9c9413d070b4285ba055a44e8b912426fed66fb0bb26ab0818/python_libsbml-5.20.4-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/a7/7f319330d9eabacbf32b0ed9bde3f8387088548f62756b4d14048c830ffe/python_libsbml-5.20.4-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/ac/a5fba140496a4c18259ceaa81c3292a139d626a791f9c621cd733f64f727/python_libsbml-5.20.4-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/ee/ee8fb79daf7133def31a34eb5efe53205924b5b9c640d4febbff1fe6ca64/python_libsbml-5.20.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/c7/1a6998b0cee736c2380345bdc27ae2bd8840c806cb36833028667a3b2605/python_libsbml-5.20.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/68/24d9b592da6a5416c533c659d208fed08ddcc10b442b1d1d2ee270a915aa/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/1d/75a7565e1af082e72b7a63fa4f186600a297ece167db2360627ebb71193a/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/6b/b1ee160b127ca459beb2fcf51285208fc223bcc40b1bc6ac43879352d632/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/62/f0c26ed535543f6bfb205e87e4418c3c37c12d7825fd30f247f0132f08a3/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/e6/d8f7554548e6fa79691301726fc9d6c3e0eedadbfb65992e1d917ab4b4f2/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/0d/686219eb0c02627571575cc73eb46dcfd1c9a43bd97fae491da105aa84a3/python_libsbml-5.20.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/5f/92323c94c8a96c498eca5673aa39228f48984a5f5443d887a86ceb9a2e62/python_libsbml-5.20.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/94/47/c55da9ac26a7992f720000338f92b8eeb87c50fced41eb7cf56a6e9b4c67/python_libsbml-5.20.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f7/e7af5fa8941eeef5883eab1c6dc241f58950715c72f793e4d89f04cb51b0/python_libsbml-5.20.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/d1/32b0f68766364b51adcf147717b4f56f374df7ae78a08436e8719f6df888/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/be/10f32360a55cb8b1395b2ba26476455cec3a870b518eb0d910e277f20fc8/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c9/5e56a08bf385080b9a9a1b8e41eb04c4a4bd649a7f6eb46dc5f72c8db420/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/64/f8404da7ba27cb4905df4713048e8194a9c711c7dae312d33b2b3a821bd6/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e8/10/ff8ab1d3a721b60827124c14f5252b7d332f3351c1e517ca4d429f1ba4c2/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/dd/659e49b36e545bdecdc3394aae0a51d55655fb7e6a5e122eb417e2ea17ea/python_libsbml-5.20.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/f4/93b12b7433288cd57c91d66401cc029fed14163b47753fdeecb7b9ec72e8/python_libsbml-5.20.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/39/85ff81ad6a098f069e6680accd97659d02efc62c32a81416717e65c00f09/python_libsbml-5.20.4-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/be/910bbd6c0c8669be8df6764bee0e6c39729c0ab6212834ecf68d24ea5be8/python_libsbml-5.20.4-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/db/7cb8f4a9d6e4d6a96072df1f409414d5628f0aa58dc91a45c601e3d711f1/python_libsbml-5.20.4-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/38/2d9c53cd3e4f3d2bb3e0dbea03ec7ec9de4507ba6e5ce73b1982e858298f/python_libsbml-5.20.4-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,876   Found link https://files.pythonhosted.org/packages/5d/74/1bf1b9883de7bc928e1727e4502c690ec09a8f7b9f2d53edb8fa452d23c3/python_libsbml-5.20.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.4
2025-09-08T02:51:52,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/56/40b610acdbde447a90b91503c81d5cc591dec29815cd427a26280fad5c84/python_libsbml-5.20.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/72/96520783019f16ec6b0189b66ea8fea7f43d11c269feaf68c42fd6c79500/python_libsbml-5.20.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e1/9f/66466d20861c14bdc18fc393bb065da7da9e0a3972b5533557f956ac1d0c/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/36/a1e96927d948b9d5bc1b3e57ea6154677c06e234ad190a2f726c331465c8/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/51/da98b3adc80c3d89a9b997b16d4a6448207d26e15c99bf464c4decbe852a/python_libsbml-5.20.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/ef/d44ea1ff0042439c29cc864c353e1ca9a062a753d5e8288ca6e6e4ba853c/python_libsbml-5.20.5-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/66/d5fc713d4a369d17522e3816be5234289cd27fc731c112ce698387382d89/python_libsbml-5.20.5-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/3f/199d494311da757de5a94404e88a0c6bbae99e64865c98dcf415b03d595a/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/17/7f1f0ad2f3b0054d1e762b6cbdd25153fd904135ce07561b0fd79dd83d90/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/a5/ef3cdd88c805181ed3da79a9ec85ee707872bacb7bc1cbc736efa9c3cd78/python_libsbml-5.20.5-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/d6/269bd9d7dfb69025e98c7afe2285a9c6d66b980209bbdbd54ffd995c592f/python_libsbml-5.20.5-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/c0/3ba180b1d18c5d1427e3772fa1402f72ce6edaac345e4aab14af61f50916/python_libsbml-5.20.5-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/7f/59669e43e75428a6e740bb11bf40f0a5f4afc7a6604f7071560dd1f7fab3/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/02/696c5a0dc72a3949224207534219afe54951381f2ad4ee1df5e03833edbe/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/68/528c874841022d90fc93854197d327aab7c65b36c8a8d954a5280e9520b4/python_libsbml-5.20.5-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/8f/e98feeb2d0a6ef95716123cb808b25723dabbcde5d0f555e89360be1d8d6/python_libsbml-5.20.5-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/45/2e64419d50428b67a7592850121afee11f83448781506bbc389f737c2597/python_libsbml-5.20.5-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/8f/3e211bbdaf69ca0c789530353cdf02711f95e70ac8581a08ce0c45903c80/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/92/a8a86812776326ffdfac6c5addc7581f6399f7b825b31dd90e211f63739f/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/49/70f6288db3ce3ef006627318d518235836c47b34e4aa7716760e33b639b9/python_libsbml-5.20.5-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/ed/28754b6c5043e55437f0175dd5f4132ff8ace0af32040c129f564ba88fe8/python_libsbml-5.20.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f2/678c5dd13f67c229c5a4edd57fefaa653311bb2bfeaf47ed02e9671af61f/python_libsbml-5.20.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/92/41/c0d5007db0988a242562f8ef8cf303302c70497effda82c6459dce4b600c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2c/5d/bb31237034edc0654363ce7e0d667cb0303da88def3083ad538b03cdee7c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/d2/c0d8c2166310a5c6fb201c05f9817fc66f17bbb3d70bde3faae15016eec1/python_libsbml-5.20.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T02:51:52,880   Found link https://files.pythonhosted.org/packages/5d/4b/b49fe7384cc9e727e88c58713edc3b4a1c469673937d8d31cafe23261120/python_libsbml-5.20.5.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.5
2025-09-08T02:51:52,881 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2025-09-08T02:51:52,881 Getting page https://www.piwheels.org/simple/python-libsbml/
2025-09-08T02:51:52,882 Found index url https://www.piwheels.org/simple/
2025-09-08T02:51:52,979 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2025-09-08T02:51:53,000   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
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2025-09-08T02:51:53,002   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
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2025-09-08T02:51:53,006   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,006   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
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2025-09-08T02:51:53,006   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,006   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
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2025-09-08T02:51:53,007   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,007   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,007   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,007   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,007   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,007   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,007   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,008   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv6l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
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2025-09-08T02:51:53,008   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,008   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp313-cp313-linux_armv6l.whl#sha256=754444f02719fb0c2031d7831da0f9a201cf15ca5788b5cb80271c51d93dbe2e (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,008   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp313-cp313-linux_armv7l.whl#sha256=754444f02719fb0c2031d7831da0f9a201cf15ca5788b5cb80271c51d93dbe2e (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,008   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,008   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,008   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,009   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,009   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv6l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,009   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv7l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,009   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,009   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,009   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,009   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,009   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,010   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,010   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv6l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,010   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,010   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,010   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,010   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp313-cp313-linux_armv6l.whl#sha256=4116db01590acb483d09a7db34dd504438979b6ecb01749ea563f941a41973c9 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,010   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp313-cp313-linux_armv7l.whl#sha256=4116db01590acb483d09a7db34dd504438979b6ecb01749ea563f941a41973c9 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,010   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,010   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,011   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,011   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,011   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv6l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,011   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv7l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,011   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,011   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,011   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp313-cp313-linux_armv6l.whl#sha256=6bff6959ed7c7720928e60e4bf6c80864e16dd558367d38f266ca4c633177080 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,011   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp313-cp313-linux_armv7l.whl#sha256=6bff6959ed7c7720928e60e4bf6c80864e16dd558367d38f266ca4c633177080 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,011   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,012   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,012   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,012   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,012   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv6l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,012   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv7l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,012   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,012   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T02:51:53,013 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2025-09-08T02:51:53,013 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2025-09-08T02:51:53,036 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2025-09-08T02:51:53,037 Collecting python-libsbml==5.10.0
2025-09-08T02:51:53,038   Created temporary directory: /tmp/pip-unpack-fm7q4a01
2025-09-08T02:51:53,099   Downloading python-libsbml-5.10.0.tar.gz (3.2 MB)
2025-09-08T02:51:54,162   Added python-libsbml==5.10.0 from https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-b6qhcn02'
2025-09-08T02:51:54,163   Running setup.py (path:/tmp/pip-wheel-xmkv86r0/python-libsbml_29bb34f297b34d81974fcba5aa7b77bf/setup.py) egg_info for package python-libsbml
2025-09-08T02:51:54,163   Created temporary directory: /tmp/pip-pip-egg-info-5nvf0kye
2025-09-08T02:51:54,164   Preparing metadata (setup.py): started
2025-09-08T02:51:54,164   Running command python setup.py egg_info
2025-09-08T02:51:54,680   /tmp/pip-wheel-xmkv86r0/python-libsbml_29bb34f297b34d81974fcba5aa7b77bf/setup.py:55: SyntaxWarning: invalid escape sequence '\D'
2025-09-08T02:51:54,681     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-08T02:51:55,740   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T02:51:55,745   Source in /tmp/pip-wheel-xmkv86r0/python-libsbml_29bb34f297b34d81974fcba5aa7b77bf has version 5.10.0, which satisfies requirement python-libsbml==5.10.0 from https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz
2025-09-08T02:51:55,745   Removed python-libsbml==5.10.0 from https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-b6qhcn02'
2025-09-08T02:51:55,748 Created temporary directory: /tmp/pip-unpack-rubtlfbq
2025-09-08T02:51:55,748 Created temporary directory: /tmp/pip-unpack-e4ugn31b
2025-09-08T02:51:55,748 Building wheels for collected packages: python-libsbml
2025-09-08T02:51:55,750   Created temporary directory: /tmp/pip-wheel-pc6_8mt7
2025-09-08T02:51:55,750   DEPRECATION: Building 'python-libsbml' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'python-libsbml'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T02:51:55,751   Building wheel for python-libsbml (setup.py): started
2025-09-08T02:51:55,752   Destination directory: /tmp/pip-wheel-pc6_8mt7
2025-09-08T02:51:55,752   Running command python setup.py bdist_wheel
2025-09-08T02:51:56,269   /tmp/pip-wheel-xmkv86r0/python-libsbml_29bb34f297b34d81974fcba5aa7b77bf/setup.py:55: SyntaxWarning: invalid escape sequence '\D'
2025-09-08T02:51:56,270     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-08T02:52:00,463   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_MangledTypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2025-09-08T02:52:00,463   ./base/libsbml_wrap.cpp:569:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,464     569 |       register size_t l = 0;
2025-09-08T02:52:00,464         |                       ^
2025-09-08T02:52:00,464   ./base/libsbml_wrap.cpp:570:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,464     570 |       register size_t r = iter->size - 1;
2025-09-08T02:52:00,464         |                       ^
2025-09-08T02:52:00,464   ./base/libsbml_wrap.cpp:573:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,465     573 |         register size_t i = (l + r) >> 1;
2025-09-08T02:52:00,465         |                         ^
2025-09-08T02:52:00,465   ./base/libsbml_wrap.cpp:576:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,465     576 |           register int compare = strcmp(name, iname);
2025-09-08T02:52:00,465         |                        ^~~~~~~
2025-09-08T02:52:00,467   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_TypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2025-09-08T02:52:00,467   ./base/libsbml_wrap.cpp:620:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,467     620 |       register size_t i = 0;
2025-09-08T02:52:00,467         |                       ^
2025-09-08T02:52:00,468   ./base/libsbml_wrap.cpp: In function ‘char* SWIG_PackData(char*, void*, size_t)’:
2025-09-08T02:52:00,468   ./base/libsbml_wrap.cpp:639:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,468     639 |   register const unsigned char *u = (unsigned char *) ptr;
2025-09-08T02:52:00,469         |                                 ^
2025-09-08T02:52:00,469   ./base/libsbml_wrap.cpp:640:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,469     640 |   register const unsigned char *eu =  u + sz;
2025-09-08T02:52:00,469         |                                 ^~
2025-09-08T02:52:00,470   ./base/libsbml_wrap.cpp:642:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,470     642 |     register unsigned char uu = *u;
2025-09-08T02:52:00,470         |                            ^~
2025-09-08T02:52:00,471   ./base/libsbml_wrap.cpp: In function ‘const char* SWIG_UnpackData(const char*, void*, size_t)’:
2025-09-08T02:52:00,471   ./base/libsbml_wrap.cpp:654:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,471     654 |   register unsigned char *u = (unsigned char *) ptr;
2025-09-08T02:52:00,471         |                           ^
2025-09-08T02:52:00,472   ./base/libsbml_wrap.cpp:655:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,472     655 |   register const unsigned char *eu = u + sz;
2025-09-08T02:52:00,472         |                                 ^~
2025-09-08T02:52:00,472   ./base/libsbml_wrap.cpp:657:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,472     657 |     register char d = *(c++);
2025-09-08T02:52:00,473         |                   ^
2025-09-08T02:52:00,473   ./base/libsbml_wrap.cpp:658:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,473     658 |     register unsigned char uu;
2025-09-08T02:52:00,473         |                            ^~
2025-09-08T02:52:00,483   ./base/libsbml_wrap.cpp: In function ‘int SWIG_Python_UnpackTuple(PyObject*, const char*, Py_ssize_t, Py_ssize_t, PyObject**)’:
2025-09-08T02:52:00,483   ./base/libsbml_wrap.cpp:1322:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,483    1322 |       register int i;
2025-09-08T02:52:00,483         |                    ^
2025-09-08T02:52:00,484   ./base/libsbml_wrap.cpp:1332:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,484    1332 |     register Py_ssize_t l = PyTuple_GET_SIZE(args);
2025-09-08T02:52:00,485         |                         ^
2025-09-08T02:52:00,486   ./base/libsbml_wrap.cpp:1342:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2025-09-08T02:52:00,486    1342 |       register int i;
2025-09-08T02:52:00,486         |                    ^
2025-09-08T02:52:01,435   ./base/libsbml_wrap.cpp: At global scope:
2025-09-08T02:52:01,435   ./base/libsbml_wrap.cpp:3202:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:01,435    3202 |     UnknownExceptionHandler(std::unexpected_handler nh = handler)
2025-09-08T02:52:01,435         |                                                                 ^
2025-09-08T02:52:01,441   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2025-09-08T02:52:01,441   ./base/libsbml_wrap.cpp:3204:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:01,441    3204 |       old = std::set_unexpected(nh);
2025-09-08T02:52:01,442         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:52:01,442   In file included from /usr/include/c++/14/ios:41,
2025-09-08T02:52:01,442                    from /usr/include/c++/14/ostream:40,
2025-09-08T02:52:01,442                    from /usr/include/c++/14/iostream:41,
2025-09-08T02:52:01,442                    from ./base/libsbml_wrap.cpp:2956:
2025-09-08T02:52:01,442   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-08T02:52:01,442      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-08T02:52:01,442         |                      ^~~~~~~~~~~~~~
2025-09-08T02:52:01,443   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2025-09-08T02:52:01,443   ./base/libsbml_wrap.cpp:3209:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:01,443    3209 |       std::set_unexpected(old);
2025-09-08T02:52:01,443         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:52:01,443   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-08T02:52:01,443      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-08T02:52:01,443         |                      ^~~~~~~~~~~~~~
2025-09-08T02:52:02,167   In file included from ./base/libsbml.h:45,
2025-09-08T02:52:02,167                    from ./base/libsbml_wrap.cpp:3787:
2025-09-08T02:52:02,167   ./base//sbml/ListOf.h: At global scope:
2025-09-08T02:52:02,167   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:02,167      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:52:02,167         |                           ^~~~~~~~~~~~~~
2025-09-08T02:52:02,167   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:52:02,168                    from ./base/libsbml_wrap.cpp:2955:
2025-09-08T02:52:02,168   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:52:02,168     117 |     struct unary_function
2025-09-08T02:52:02,168         |            ^~~~~~~~~~~~~~
2025-09-08T02:52:02,993   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T02:52:02,993                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T02:52:02,993                    from ./base/../swig/fbc-package.h:31,
2025-09-08T02:52:02,993                    from ./base/../swig/libsbml-packages.h:8,
2025-09-08T02:52:02,994                    from ./base/libsbml_wrap.cpp:3791:
2025-09-08T02:52:02,994   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:02,994     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T02:52:02,994         |                                          ^~~~~~~~~~~~~~
2025-09-08T02:52:02,994   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:52:02,994     117 |     struct unary_function
2025-09-08T02:52:02,994         |            ^~~~~~~~~~~~~~
2025-09-08T02:52:03,000   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:03,000     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T02:52:03,001         |                                      ^~~~~~~~~~~~~~
2025-09-08T02:52:03,001   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:52:03,001     117 |     struct unary_function
2025-09-08T02:52:03,001         |            ^~~~~~~~~~~~~~
2025-09-08T02:52:03,016   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T02:52:03,017   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:03,017     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T02:52:03,017         |                                            ^~~~~~~~~~~~~~
2025-09-08T02:52:03,017   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:52:03,017     117 |     struct unary_function
2025-09-08T02:52:03,017         |            ^~~~~~~~~~~~~~
2025-09-08T02:52:03,040   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T02:52:03,040                    from ./base/../swig/layout-package.h:49,
2025-09-08T02:52:03,040                    from ./base/../swig/libsbml-packages.h:11:
2025-09-08T02:52:03,040   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T02:52:03,040     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T02:52:03,040         |                             ^~~~~~~~
2025-09-08T02:52:03,040   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T02:52:03,041     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T02:52:03,041         |                              ^~~~~~~~
2025-09-08T02:52:03,046   In file included from ./base//sbml/packages/layout/sbml/CubicBezier.h:56,
2025-09-08T02:52:03,046                    from ./base/../swig/layout-package.h:50:
2025-09-08T02:52:03,046   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T02:52:03,046     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T02:52:03,046         |                        ^~~~~~~~
2025-09-08T02:52:03,046   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T02:52:03,046     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T02:52:03,047         |                        ^~~~~~~~
2025-09-08T02:52:03,052   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T02:52:03,052     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T02:52:03,052         |                             ^~~~~~~~
2025-09-08T02:52:03,052   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61,
2025-09-08T02:52:03,053                    from ./base/../swig/layout-package.h:54:
2025-09-08T02:52:03,053   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T02:52:03,053     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T02:52:03,053         |                          ^~~~~~~~
2025-09-08T02:52:03,055   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T02:52:03,056     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T02:52:03,056         |                             ^~~~~~~~
2025-09-08T02:52:03,056   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T02:52:03,056                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T02:52:03,056   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T02:52:03,056     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T02:52:03,056         |                                   ^~~~~~~~
2025-09-08T02:52:03,061   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T02:52:03,061     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T02:52:03,061         |                             ^~~~~~~~
2025-09-08T02:52:03,061   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T02:52:03,061     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T02:52:03,061         |                           ^~~~~~~~
2025-09-08T02:52:03,064   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T02:52:03,064     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T02:52:03,065         |                             ^~~~~~~~
2025-09-08T02:52:03,065   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T02:52:03,065   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T02:52:03,065     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T02:52:03,065         |                      ^~~~~~~~
2025-09-08T02:52:03,081   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T02:52:03,081     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T02:52:03,082         |                             ^~~~~~~~
2025-09-08T02:52:03,082   In file included from ./base/../swig/layout-package.h:57:
2025-09-08T02:52:03,082   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T02:52:03,082     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T02:52:03,082         |                            ^~~~~~~~
2025-09-08T02:52:03,087   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T02:52:03,087     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T02:52:03,087         |                             ^~~~~~~~
2025-09-08T02:52:03,087   In file included from ./base/../swig/layout-package.h:58:
2025-09-08T02:52:03,087   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T02:52:03,088     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T02:52:03,088         |                          ^~~~~~~~
2025-09-08T02:52:03,213   ./base/libsbml_wrap.cpp:4695:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:03,213    4695 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2025-09-08T02:52:03,213         |                                    ^~~~~~~~~~~~~~~
2025-09-08T02:52:03,213   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T02:52:03,213     131 |     struct binary_function
2025-09-08T02:52:03,213         |            ^~~~~~~~~~~~~~~
2025-09-08T02:52:03,217   ./base/libsbml_wrap.cpp:4720:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:03,217    4720 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2025-09-08T02:52:03,217         |                                                ^~~~~~~~~~~~~~~
2025-09-08T02:52:03,217   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T02:52:03,217     131 |     struct binary_function
2025-09-08T02:52:03,217         |            ^~~~~~~~~~~~~~~
2025-09-08T02:52:03,221   ./base/libsbml_wrap.cpp:4730:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:52:03,222    4730 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2025-09-08T02:52:03,222         |                                                ^~~~~~~~~~~~~~~
2025-09-08T02:52:03,222   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T02:52:03,222     131 |     struct binary_function
2025-09-08T02:52:03,222         |            ^~~~~~~~~~~~~~~
2025-09-08T02:57:51,704   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:57:51,704                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:57:51,704                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:57:51,704                    from ./base/sbml/AlgebraicRule.cpp:49:
2025-09-08T02:57:51,704   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:57:51,704      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:57:51,705         |                           ^~~~~~~~~~~~~~
2025-09-08T02:57:51,705   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:57:51,705                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:57:51,705                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:57:51,705                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:57:51,705                    from ./base/sbml/AlgebraicRule.cpp:34:
2025-09-08T02:57:51,705   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:57:51,705     117 |     struct unary_function
2025-09-08T02:57:51,705         |            ^~~~~~~~~~~~~~
2025-09-08T02:57:55,412   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:57:55,412                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:57:55,413                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:57:55,413                    from ./base/sbml/AssignmentRule.cpp:49:
2025-09-08T02:57:55,413   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:57:55,413      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:57:55,413         |                           ^~~~~~~~~~~~~~
2025-09-08T02:57:55,413   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:57:55,413                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:57:55,413                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:57:55,414                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:57:55,414                    from ./base/sbml/AssignmentRule.cpp:34:
2025-09-08T02:57:55,414   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:57:55,414     117 |     struct unary_function
2025-09-08T02:57:55,414         |            ^~~~~~~~~~~~~~
2025-09-08T02:57:59,126   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:57:59,126                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:57:59,126                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:57:59,126                    from ./base/sbml/Compartment.cpp:41:
2025-09-08T02:57:59,127   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:57:59,127      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:57:59,127         |                           ^~~~~~~~~~~~~~
2025-09-08T02:57:59,127   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:57:59,127                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:57:59,127                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:57:59,127                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:57:59,127                    from ./base/sbml/Compartment.cpp:35:
2025-09-08T02:57:59,127   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:57:59,128     117 |     struct unary_function
2025-09-08T02:57:59,128         |            ^~~~~~~~~~~~~~
2025-09-08T02:57:59,362   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-08T02:57:59,362   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:57:59,362     146 |   if (&orig == NULL)
2025-09-08T02:57:59,362         |             ^
2025-09-08T02:57:59,363   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2025-09-08T02:57:59,363     143 | Compartment::Compartment(const Compartment& orig) :
2025-09-08T02:57:59,363         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:57:59,364   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-08T02:57:59,364   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:57:59,365     175 |   if (&rhs == NULL)
2025-09-08T02:57:59,365         |            ^
2025-09-08T02:57:59,365   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2025-09-08T02:57:59,365     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2025-09-08T02:57:59,365         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:57:59,371   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-08T02:57:59,371   ./base/sbml/Compartment.cpp:496:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:57:59,371     496 |   if (&(sid) == NULL)
2025-09-08T02:57:59,371         |              ^
2025-09-08T02:57:59,371   ./base/sbml/Compartment.cpp:485:40: note: ‘sid’ declared here
2025-09-08T02:57:59,371     485 | Compartment::setId (const std::string& sid)
2025-09-08T02:57:59,371         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:57:59,372   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-08T02:57:59,372   ./base/sbml/Compartment.cpp:521:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:57:59,372     521 |   if (&(name) == NULL)
2025-09-08T02:57:59,372         |               ^
2025-09-08T02:57:59,372   ./base/sbml/Compartment.cpp:516:42: note: ‘name’ declared here
2025-09-08T02:57:59,372     516 | Compartment::setName (const std::string& name)
2025-09-08T02:57:59,372         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:57:59,373   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-08T02:57:59,373   ./base/sbml/Compartment.cpp:551:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:57:59,373     551 |   if (&(sid) == NULL)
2025-09-08T02:57:59,373         |              ^
2025-09-08T02:57:59,373   ./base/sbml/Compartment.cpp:549:53: note: ‘sid’ declared here
2025-09-08T02:57:59,373     549 | Compartment::setCompartmentType (const std::string& sid)
2025-09-08T02:57:59,373         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:57:59,375   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-08T02:57:59,375   ./base/sbml/Compartment.cpp:673:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:57:59,375     673 |   if (&(sid) == NULL)
2025-09-08T02:57:59,376         |              ^
2025-09-08T02:57:59,376   ./base/sbml/Compartment.cpp:671:43: note: ‘sid’ declared here
2025-09-08T02:57:59,376     671 | Compartment::setUnits (const std::string& sid)
2025-09-08T02:57:59,376         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:57:59,376   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-08T02:57:59,376   ./base/sbml/Compartment.cpp:695:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:57:59,376     695 |   if (&(sid) == NULL)
2025-09-08T02:57:59,376         |              ^
2025-09-08T02:57:59,376   ./base/sbml/Compartment.cpp:693:45: note: ‘sid’ declared here
2025-09-08T02:57:59,377     693 | Compartment::setOutside (const std::string& sid)
2025-09-08T02:57:59,377         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:57:59,416   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-08T02:57:59,416   ./base/sbml/Compartment.cpp:1534:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:57:59,416    1534 |   if (&(sid) == NULL)
2025-09-08T02:57:59,417         |              ^
2025-09-08T02:57:59,417   ./base/sbml/Compartment.cpp:1530:45: note: ‘sid’ declared here
2025-09-08T02:57:59,417    1530 | ListOfCompartments::get (const std::string& sid) const
2025-09-08T02:57:59,417         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:57:59,420   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-08T02:57:59,420   ./base/sbml/Compartment.cpp:1562:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:57:59,420    1562 |   if (&(sid) != NULL)
2025-09-08T02:57:59,420         |              ^
2025-09-08T02:57:59,420   ./base/sbml/Compartment.cpp:1557:48: note: ‘sid’ declared here
2025-09-08T02:57:59,421    1557 | ListOfCompartments::remove (const std::string& sid)
2025-09-08T02:57:59,421         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:57:59,425   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2025-09-08T02:57:59,425   ./base/sbml/Compartment.cpp:1640:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:57:59,426    1640 |   catch (SBMLConstructorException)
2025-09-08T02:57:59,426         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:57:59,426   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:57:59,426   ./base/sbml/Compartment.cpp:1656:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:57:59,426    1656 |   catch (SBMLConstructorException)
2025-09-08T02:57:59,426         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:57:59,954   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-08T02:57:59,955   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:57:59,955     146 |   if (&orig == NULL)
2025-09-08T02:57:59,955         |   ^~
2025-09-08T02:57:59,955   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-08T02:57:59,955   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:57:59,955     175 |   if (&rhs == NULL)
2025-09-08T02:57:59,955         |   ^~
2025-09-08T02:57:59,958   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-08T02:57:59,958   ./base/sbml/Compartment.cpp:496:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:57:59,958     496 |   if (&(sid) == NULL)
2025-09-08T02:57:59,958         |   ^~
2025-09-08T02:57:59,958   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-08T02:57:59,958   ./base/sbml/Compartment.cpp:521:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:57:59,958     521 |   if (&(name) == NULL)
2025-09-08T02:57:59,959         |   ^~
2025-09-08T02:57:59,959   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-08T02:57:59,959   ./base/sbml/Compartment.cpp:551:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:57:59,959     551 |   if (&(sid) == NULL)
2025-09-08T02:57:59,959         |   ^~
2025-09-08T02:57:59,959   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-08T02:57:59,959   ./base/sbml/Compartment.cpp:673:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:57:59,959     673 |   if (&(sid) == NULL)
2025-09-08T02:57:59,959         |   ^~
2025-09-08T02:57:59,960   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-08T02:57:59,960   ./base/sbml/Compartment.cpp:695:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:57:59,960     695 |   if (&(sid) == NULL)
2025-09-08T02:57:59,960         |   ^~
2025-09-08T02:57:59,964   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-08T02:57:59,964   ./base/sbml/Compartment.cpp:1534:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:57:59,965    1534 |   if (&(sid) == NULL)
2025-09-08T02:57:59,965         |   ^~
2025-09-08T02:57:59,973   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-08T02:57:59,973   ./base/sbml/Compartment.cpp:1562:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:57:59,973    1562 |   if (&(sid) != NULL)
2025-09-08T02:57:59,973         |   ^~
2025-09-08T02:58:07,807   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:58:07,808                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:58:07,808                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:58:07,808                    from ./base/sbml/CompartmentType.cpp:40:
2025-09-08T02:58:07,808   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:07,808      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:58:07,808         |                           ^~~~~~~~~~~~~~
2025-09-08T02:58:07,809   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:58:07,809                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:58:07,809                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:58:07,809                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:58:07,809                    from ./base/sbml/CompartmentType.cpp:33:
2025-09-08T02:58:07,809   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:07,809     117 |     struct unary_function
2025-09-08T02:58:07,809         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:08,043   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-08T02:58:08,043   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:58:08,043      92 |   if (&orig == NULL)
2025-09-08T02:58:08,043         |             ^
2025-09-08T02:58:08,043   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2025-09-08T02:58:08,043      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2025-09-08T02:58:08,043         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:58:08,045   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-08T02:58:08,045   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:58:08,045     110 |   if (&rhs == NULL)
2025-09-08T02:58:08,045         |            ^
2025-09-08T02:58:08,046   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2025-09-08T02:58:08,046     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2025-09-08T02:58:08,046         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:08,049   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-08T02:58:08,049   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:08,049     207 |   if (&(sid) == NULL)
2025-09-08T02:58:08,049         |              ^
2025-09-08T02:58:08,050   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2025-09-08T02:58:08,050     196 | CompartmentType::setId (const std::string& sid)
2025-09-08T02:58:08,050         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:08,051   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-08T02:58:08,051   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:58:08,051     232 |   if (&(name) == NULL)
2025-09-08T02:58:08,051         |               ^
2025-09-08T02:58:08,051   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2025-09-08T02:58:08,051     227 | CompartmentType::setName (const std::string& name)
2025-09-08T02:58:08,052         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:58:08,062   ./base/sbml/CompartmentType.cpp: At global scope:
2025-09-08T02:58:08,063   ./base/sbml/CompartmentType.cpp:543:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:08,063     543 | struct IdEqCT : public unary_function<SBase*, bool>
2025-09-08T02:58:08,063         |                        ^~~~~~~~~~~~~~
2025-09-08T02:58:08,063   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:08,063     117 |     struct unary_function
2025-09-08T02:58:08,063         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:08,067   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-08T02:58:08,067   ./base/sbml/CompartmentType.cpp:568:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:08,067     568 |   if (&(sid) == NULL)
2025-09-08T02:58:08,067         |              ^
2025-09-08T02:58:08,067   ./base/sbml/CompartmentType.cpp:564:49: note: ‘sid’ declared here
2025-09-08T02:58:08,067     564 | ListOfCompartmentTypes::get (const std::string& sid) const
2025-09-08T02:58:08,068         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:08,071   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-08T02:58:08,071   ./base/sbml/CompartmentType.cpp:596:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:08,072     596 |   if (&(sid) != NULL)
2025-09-08T02:58:08,072         |              ^
2025-09-08T02:58:08,072   ./base/sbml/CompartmentType.cpp:591:52: note: ‘sid’ declared here
2025-09-08T02:58:08,072     591 | ListOfCompartmentTypes::remove (const std::string& sid)
2025-09-08T02:58:08,072         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:08,077   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2025-09-08T02:58:08,078   ./base/sbml/CompartmentType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:08,078     674 |   catch (SBMLConstructorException)
2025-09-08T02:58:08,078         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:08,079   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:58:08,079   ./base/sbml/CompartmentType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:08,079     690 |   catch (SBMLConstructorException)
2025-09-08T02:58:08,079         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:08,568   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-08T02:58:08,568   ./base/sbml/CompartmentType.cpp:568:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:08,568     568 |   if (&(sid) == NULL)
2025-09-08T02:58:08,569         |   ^~
2025-09-08T02:58:08,572   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-08T02:58:08,572   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:08,572      92 |   if (&orig == NULL)
2025-09-08T02:58:08,572         |   ^~
2025-09-08T02:58:08,573   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-08T02:58:08,573   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:08,573     110 |   if (&rhs == NULL)
2025-09-08T02:58:08,573         |   ^~
2025-09-08T02:58:08,576   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-08T02:58:08,576   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:08,576     207 |   if (&(sid) == NULL)
2025-09-08T02:58:08,576         |   ^~
2025-09-08T02:58:08,576   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-08T02:58:08,577   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:08,577     232 |   if (&(name) == NULL)
2025-09-08T02:58:08,577         |   ^~
2025-09-08T02:58:08,584   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-08T02:58:08,585   ./base/sbml/CompartmentType.cpp:596:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:08,585     596 |   if (&(sid) != NULL)
2025-09-08T02:58:08,585         |   ^~
2025-09-08T02:58:13,446   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:58:13,446                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:58:13,446                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:58:13,446                    from ./base/sbml/Constraint.cpp:43:
2025-09-08T02:58:13,447   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:13,447      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:58:13,447         |                           ^~~~~~~~~~~~~~
2025-09-08T02:58:13,447   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:58:13,447                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:58:13,447                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:58:13,447                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:58:13,447                    from ./base/sbml/Constraint.cpp:33:
2025-09-08T02:58:13,447   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:13,447     117 |     struct unary_function
2025-09-08T02:58:13,448         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:13,677   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-08T02:58:13,677   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:58:13,678     101 |   if (&orig == NULL)
2025-09-08T02:58:13,678         |             ^
2025-09-08T02:58:13,678   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2025-09-08T02:58:13,678      96 | Constraint::Constraint (const Constraint& orig) :
2025-09-08T02:58:13,678         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:58:13,679   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-08T02:58:13,679   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:58:13,679     122 |   if (&rhs == NULL)
2025-09-08T02:58:13,680         |            ^
2025-09-08T02:58:13,680   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2025-09-08T02:58:13,680     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2025-09-08T02:58:13,680         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:13,704   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2025-09-08T02:58:13,704   ./base/sbml/Constraint.cpp:772:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:13,704     772 |   catch (SBMLConstructorException)
2025-09-08T02:58:13,705         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:13,705   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:58:13,705   ./base/sbml/Constraint.cpp:788:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:13,705     788 |   catch (SBMLConstructorException)
2025-09-08T02:58:13,705         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:14,172   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-08T02:58:14,172   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:14,172     101 |   if (&orig == NULL)
2025-09-08T02:58:14,172         |   ^~
2025-09-08T02:58:14,173   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-08T02:58:14,173   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:14,173     122 |   if (&rhs == NULL)
2025-09-08T02:58:14,173         |   ^~
2025-09-08T02:58:18,473   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:58:18,473                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:58:18,473                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:58:18,473                    from ./base/sbml/Delay.cpp:45:
2025-09-08T02:58:18,473   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:18,474      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:58:18,474         |                           ^~~~~~~~~~~~~~
2025-09-08T02:58:18,474   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:58:18,474                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:58:18,475                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:58:18,475                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:58:18,475                    from ./base/sbml/Delay.cpp:33:
2025-09-08T02:58:18,475   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:18,475     117 |     struct unary_function
2025-09-08T02:58:18,475         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:18,705   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-08T02:58:18,705   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:58:18,706     100 |   if (&orig == NULL)
2025-09-08T02:58:18,706         |             ^
2025-09-08T02:58:18,706   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2025-09-08T02:58:18,706      96 | Delay::Delay (const Delay& orig) :
2025-09-08T02:58:18,706         |               ~~~~~~~~~~~~~^~~~
2025-09-08T02:58:18,708   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-08T02:58:18,708   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:58:18,708     122 |   if (&rhs == NULL)
2025-09-08T02:58:18,708         |            ^
2025-09-08T02:58:18,708   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2025-09-08T02:58:18,709     120 | Delay& Delay::operator=(const Delay& rhs)
2025-09-08T02:58:18,709         |                         ~~~~~~~~~~~~~^~~
2025-09-08T02:58:18,725   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2025-09-08T02:58:18,726   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:18,726     648 |   catch (SBMLConstructorException)
2025-09-08T02:58:18,726         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:18,727   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:58:18,727   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:18,727     664 |   catch (SBMLConstructorException)
2025-09-08T02:58:18,727         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:19,157   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-08T02:58:19,157   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:19,157     100 |   if (&orig == NULL)
2025-09-08T02:58:19,157         |   ^~
2025-09-08T02:58:19,158   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-08T02:58:19,158   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:19,158     122 |   if (&rhs == NULL)
2025-09-08T02:58:19,158         |   ^~
2025-09-08T02:58:22,961   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:58:22,961                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:58:22,961                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:58:22,962                    from ./base/sbml/Event.cpp:44:
2025-09-08T02:58:22,962   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:22,962      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:58:22,962         |                           ^~~~~~~~~~~~~~
2025-09-08T02:58:22,962   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:58:22,962                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:58:22,962                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:58:22,962                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:58:22,962                    from ./base/sbml/Event.cpp:33:
2025-09-08T02:58:22,963   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:22,963     117 |     struct unary_function
2025-09-08T02:58:22,963         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:23,196   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-08T02:58:23,196   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:58:23,197     134 |   if (&orig == NULL)
2025-09-08T02:58:23,197         |             ^
2025-09-08T02:58:23,197   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2025-09-08T02:58:23,197     127 | Event::Event (const Event& orig) :
2025-09-08T02:58:23,197         |               ~~~~~~~~~~~~~^~~~
2025-09-08T02:58:23,199   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-08T02:58:23,199   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:58:23,199     171 |   if (&rhs == NULL)
2025-09-08T02:58:23,200         |            ^
2025-09-08T02:58:23,200   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2025-09-08T02:58:23,200     169 | Event& Event::operator=(const Event& rhs)
2025-09-08T02:58:23,200         |                         ~~~~~~~~~~~~~^~~
2025-09-08T02:58:23,215   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-08T02:58:23,215   ./base/sbml/Event.cpp:530:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:23,215     530 |   if (&(sid) == NULL)
2025-09-08T02:58:23,215         |              ^
2025-09-08T02:58:23,216   ./base/sbml/Event.cpp:519:34: note: ‘sid’ declared here
2025-09-08T02:58:23,216     519 | Event::setId (const std::string& sid)
2025-09-08T02:58:23,216         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:23,216   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-08T02:58:23,216   ./base/sbml/Event.cpp:556:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:58:23,216     556 |   if (&(name) == NULL)
2025-09-08T02:58:23,216         |               ^
2025-09-08T02:58:23,216   ./base/sbml/Event.cpp:551:36: note: ‘name’ declared here
2025-09-08T02:58:23,216     551 | Event::setName (const std::string& name)
2025-09-08T02:58:23,217         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:58:23,222   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-08T02:58:23,222   ./base/sbml/Event.cpp:704:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:23,222     704 |   if (&(sid) == NULL)
2025-09-08T02:58:23,223         |              ^
2025-09-08T02:58:23,223   ./base/sbml/Event.cpp:702:41: note: ‘sid’ declared here
2025-09-08T02:58:23,223     702 | Event::setTimeUnits (const std::string& sid)
2025-09-08T02:58:23,223         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:23,230   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-08T02:58:23,230   ./base/sbml/Event.cpp:1079:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T02:58:23,230    1079 |   return (&variable != NULL ) ?
2025-09-08T02:58:23,230         |                     ^
2025-09-08T02:58:23,230   ./base/sbml/Event.cpp:1077:47: note: ‘variable’ declared here
2025-09-08T02:58:23,231    1077 | Event::getEventAssignment (const std::string& variable) const
2025-09-08T02:58:23,231         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T02:58:23,231   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-08T02:58:23,231   ./base/sbml/Event.cpp:1091:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T02:58:23,231    1091 |   return (&variable != NULL ) ?
2025-09-08T02:58:23,231         |                     ^
2025-09-08T02:58:23,231   ./base/sbml/Event.cpp:1089:47: note: ‘variable’ declared here
2025-09-08T02:58:23,231    1089 | Event::getEventAssignment (const std::string& variable)
2025-09-08T02:58:23,232         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T02:58:23,232   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-08T02:58:23,232   ./base/sbml/Event.cpp:1124:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T02:58:23,232    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-08T02:58:23,232         |                     ^
2025-09-08T02:58:23,232   ./base/sbml/Event.cpp:1122:50: note: ‘variable’ declared here
2025-09-08T02:58:23,232    1122 | Event::removeEventAssignment (const std::string& variable)
2025-09-08T02:58:23,232         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T02:58:23,260   ./base/sbml/Event.cpp: At global scope:
2025-09-08T02:58:23,261   ./base/sbml/Event.cpp:1741:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:23,261    1741 | struct IdEqE : public unary_function<SBase*, bool>
2025-09-08T02:58:23,261         |                       ^~~~~~~~~~~~~~
2025-09-08T02:58:23,261   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:23,261     117 |     struct unary_function
2025-09-08T02:58:23,261         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:23,262   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-08T02:58:23,263   ./base/sbml/Event.cpp:1755:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:23,263    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-08T02:58:23,263         |                ^
2025-09-08T02:58:23,263   ./base/sbml/Event.cpp:1753:39: note: ‘sid’ declared here
2025-09-08T02:58:23,263    1753 | ListOfEvents::get (const std::string& sid)
2025-09-08T02:58:23,263         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:23,263   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-08T02:58:23,263   ./base/sbml/Event.cpp:1764:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:23,263    1764 |   if (&sid == NULL) return NULL;
2025-09-08T02:58:23,264         |            ^
2025-09-08T02:58:23,264   ./base/sbml/Event.cpp:1762:39: note: ‘sid’ declared here
2025-09-08T02:58:23,264    1762 | ListOfEvents::get (const std::string& sid) const
2025-09-08T02:58:23,264         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:23,268   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-08T02:58:23,268   ./base/sbml/Event.cpp:1787:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:23,268    1787 |   if (&(sid) != NULL)
2025-09-08T02:58:23,268         |              ^
2025-09-08T02:58:23,268   ./base/sbml/Event.cpp:1782:42: note: ‘sid’ declared here
2025-09-08T02:58:23,268    1782 | ListOfEvents::remove (const std::string& sid)
2025-09-08T02:58:23,269         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:23,273   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2025-09-08T02:58:23,273   ./base/sbml/Event.cpp:1866:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:23,273    1866 |   catch (SBMLConstructorException)
2025-09-08T02:58:23,273         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:23,274   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:58:23,274   ./base/sbml/Event.cpp:1882:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:23,274    1882 |   catch (SBMLConstructorException)
2025-09-08T02:58:23,274         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:23,790   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-08T02:58:23,790   ./base/sbml/Event.cpp:1755:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,790    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-08T02:58:23,791         |                         ^
2025-09-08T02:58:23,798   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-08T02:58:23,799   ./base/sbml/Event.cpp:1079:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,799    1079 |   return (&variable != NULL ) ?
2025-09-08T02:58:23,799         |                               ^
2025-09-08T02:58:23,799   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-08T02:58:23,799   ./base/sbml/Event.cpp:1091:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,799    1091 |   return (&variable != NULL ) ?
2025-09-08T02:58:23,799         |                               ^
2025-09-08T02:58:23,799   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-08T02:58:23,799   ./base/sbml/Event.cpp:1124:30: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,800    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-08T02:58:23,800         |                              ^
2025-09-08T02:58:23,810   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-08T02:58:23,810   ./base/sbml/Event.cpp:1764:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,810    1764 |   if (&sid == NULL) return NULL;
2025-09-08T02:58:23,810         |   ^~
2025-09-08T02:58:23,813   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-08T02:58:23,813   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,813     171 |   if (&rhs == NULL)
2025-09-08T02:58:23,813         |   ^~
2025-09-08T02:58:23,818   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-08T02:58:23,819   ./base/sbml/Event.cpp:530:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,819     530 |   if (&(sid) == NULL)
2025-09-08T02:58:23,819         |   ^~
2025-09-08T02:58:23,819   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-08T02:58:23,819   ./base/sbml/Event.cpp:556:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,819     556 |   if (&(name) == NULL)
2025-09-08T02:58:23,819         |   ^~
2025-09-08T02:58:23,819   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-08T02:58:23,819   ./base/sbml/Event.cpp:704:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,819     704 |   if (&(sid) == NULL)
2025-09-08T02:58:23,820         |   ^~
2025-09-08T02:58:23,827   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-08T02:58:23,827   ./base/sbml/Event.cpp:1787:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,827    1787 |   if (&(sid) != NULL)
2025-09-08T02:58:23,827         |   ^~
2025-09-08T02:58:23,830   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-08T02:58:23,830   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:23,830     134 |   if (&orig == NULL)
2025-09-08T02:58:23,830         |   ^~
2025-09-08T02:58:30,916   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:58:30,917                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:58:30,917                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:58:30,917                    from ./base/sbml/EventAssignment.cpp:44:
2025-09-08T02:58:30,917   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:30,917      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:58:30,917         |                           ^~~~~~~~~~~~~~
2025-09-08T02:58:30,918   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:58:30,918                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:58:30,918                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:58:30,918                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:58:30,918                    from ./base/sbml/EventAssignment.cpp:33:
2025-09-08T02:58:30,918   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:30,919     117 |     struct unary_function
2025-09-08T02:58:30,919         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:31,164   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-08T02:58:31,164   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:58:31,164     100 |   if (&orig == NULL)
2025-09-08T02:58:31,164         |             ^
2025-09-08T02:58:31,164   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2025-09-08T02:58:31,165      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2025-09-08T02:58:31,165         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:58:31,180   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-08T02:58:31,180   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:58:31,180     122 |   if (&rhs == NULL)
2025-09-08T02:58:31,180         |            ^
2025-09-08T02:58:31,181   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2025-09-08T02:58:31,181     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2025-09-08T02:58:31,181         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:31,184   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-08T02:58:31,184   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:31,184     219 |   if (&(sid) == NULL)
2025-09-08T02:58:31,184         |              ^
2025-09-08T02:58:31,185   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2025-09-08T02:58:31,185     217 | EventAssignment::setVariable (const std::string& sid)
2025-09-08T02:58:31,185         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:31,210   ./base/sbml/EventAssignment.cpp: At global scope:
2025-09-08T02:58:31,210   ./base/sbml/EventAssignment.cpp:846:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:31,211     846 | struct IdEqEA : public unary_function<SBase*, bool>
2025-09-08T02:58:31,211         |                        ^~~~~~~~~~~~~~
2025-09-08T02:58:31,211   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:31,211     117 |     struct unary_function
2025-09-08T02:58:31,211         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:31,214   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-08T02:58:31,215   ./base/sbml/EventAssignment.cpp:871:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:31,215     871 |   if (&(sid) == NULL)
2025-09-08T02:58:31,215         |              ^
2025-09-08T02:58:31,215   ./base/sbml/EventAssignment.cpp:867:49: note: ‘sid’ declared here
2025-09-08T02:58:31,215     867 | ListOfEventAssignments::get (const std::string& sid) const
2025-09-08T02:58:31,215         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:31,219   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-08T02:58:31,219   ./base/sbml/EventAssignment.cpp:899:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:31,219     899 |   if (&(sid) != NULL)
2025-09-08T02:58:31,219         |              ^
2025-09-08T02:58:31,219   ./base/sbml/EventAssignment.cpp:894:52: note: ‘sid’ declared here
2025-09-08T02:58:31,219     894 | ListOfEventAssignments::remove (const std::string& sid)
2025-09-08T02:58:31,220         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:31,226   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2025-09-08T02:58:31,226   ./base/sbml/EventAssignment.cpp:992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:31,226     992 |   catch (SBMLConstructorException)
2025-09-08T02:58:31,226         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:31,227   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:58:31,227   ./base/sbml/EventAssignment.cpp:1008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:31,227    1008 |   catch (SBMLConstructorException)
2025-09-08T02:58:31,227         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:31,728   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-08T02:58:31,728   ./base/sbml/EventAssignment.cpp:871:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:31,728     871 |   if (&(sid) == NULL)
2025-09-08T02:58:31,729         |   ^~
2025-09-08T02:58:31,732   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-08T02:58:31,732   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:31,732     100 |   if (&orig == NULL)
2025-09-08T02:58:31,732         |   ^~
2025-09-08T02:58:31,733   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-08T02:58:31,733   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:31,733     122 |   if (&rhs == NULL)
2025-09-08T02:58:31,733         |   ^~
2025-09-08T02:58:31,736   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-08T02:58:31,736   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:31,736     219 |   if (&(sid) == NULL)
2025-09-08T02:58:31,736         |   ^~
2025-09-08T02:58:31,747   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-08T02:58:31,747   ./base/sbml/EventAssignment.cpp:899:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:31,747     899 |   if (&(sid) != NULL)
2025-09-08T02:58:31,747         |   ^~
2025-09-08T02:58:39,478   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:58:39,478                    from ./base/sbml/FunctionDefinition.cpp:47:
2025-09-08T02:58:39,478   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:39,478      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:58:39,478         |                           ^~~~~~~~~~~~~~
2025-09-08T02:58:39,478   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:58:39,478                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:58:39,479                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:58:39,479                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:58:39,479                    from ./base/sbml/FunctionDefinition.cpp:35:
2025-09-08T02:58:39,479   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:39,479     117 |     struct unary_function
2025-09-08T02:58:39,479         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:39,760   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-08T02:58:39,760   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:58:39,760     102 |   if (&orig == NULL)
2025-09-08T02:58:39,760         |             ^
2025-09-08T02:58:39,760   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2025-09-08T02:58:39,761      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2025-09-08T02:58:39,761         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:58:39,762   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-08T02:58:39,762   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:58:39,762     125 |   if (&rhs == NULL)
2025-09-08T02:58:39,762         |            ^
2025-09-08T02:58:39,762   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2025-09-08T02:58:39,762     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2025-09-08T02:58:39,763         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:39,765   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-08T02:58:39,766   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:39,766     253 |   if (&(sid) == NULL)
2025-09-08T02:58:39,766         |              ^
2025-09-08T02:58:39,766   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2025-09-08T02:58:39,766     242 | FunctionDefinition::setId (const std::string& sid)
2025-09-08T02:58:39,766         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:39,766   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-08T02:58:39,766   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:58:39,767     278 |   if (&(name) == NULL)
2025-09-08T02:58:39,767         |               ^
2025-09-08T02:58:39,767   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2025-09-08T02:58:39,767     273 | FunctionDefinition::setName (const std::string& name)
2025-09-08T02:58:39,767         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:58:39,793   ./base/sbml/FunctionDefinition.cpp: At global scope:
2025-09-08T02:58:39,794   ./base/sbml/FunctionDefinition.cpp:994:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:39,794     994 | struct IdEqFD : public unary_function<SBase*, bool>
2025-09-08T02:58:39,794         |                        ^~~~~~~~~~~~~~
2025-09-08T02:58:39,794   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:39,794     117 |     struct unary_function
2025-09-08T02:58:39,794         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:39,797   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-08T02:58:39,797   ./base/sbml/FunctionDefinition.cpp:1019:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:39,797    1019 |   if (&(sid) == NULL)
2025-09-08T02:58:39,797         |              ^
2025-09-08T02:58:39,797   ./base/sbml/FunctionDefinition.cpp:1015:52: note: ‘sid’ declared here
2025-09-08T02:58:39,798    1015 | ListOfFunctionDefinitions::get (const std::string& sid) const
2025-09-08T02:58:39,798         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:39,800   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-08T02:58:39,801   ./base/sbml/FunctionDefinition.cpp:1047:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:39,801    1047 |   if (&(sid) != NULL)
2025-09-08T02:58:39,801         |              ^
2025-09-08T02:58:39,801   ./base/sbml/FunctionDefinition.cpp:1042:55: note: ‘sid’ declared here
2025-09-08T02:58:39,801    1042 | ListOfFunctionDefinitions::remove (const std::string& sid)
2025-09-08T02:58:39,801         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:39,806   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2025-09-08T02:58:39,806   ./base/sbml/FunctionDefinition.cpp:1124:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:39,806    1124 |   catch (SBMLConstructorException)
2025-09-08T02:58:39,806         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:39,806   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:58:39,807   ./base/sbml/FunctionDefinition.cpp:1140:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:39,807    1140 |   catch (SBMLConstructorException)
2025-09-08T02:58:39,807         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:40,318   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-08T02:58:40,319   ./base/sbml/FunctionDefinition.cpp:1019:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:40,319    1019 |   if (&(sid) == NULL)
2025-09-08T02:58:40,319         |   ^~
2025-09-08T02:58:40,322   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-08T02:58:40,322   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:40,322     102 |   if (&orig == NULL)
2025-09-08T02:58:40,322         |   ^~
2025-09-08T02:58:40,322   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-08T02:58:40,322   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:40,322     125 |   if (&rhs == NULL)
2025-09-08T02:58:40,322         |   ^~
2025-09-08T02:58:40,325   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-08T02:58:40,325   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:40,325     253 |   if (&(sid) == NULL)
2025-09-08T02:58:40,325         |   ^~
2025-09-08T02:58:40,325   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-08T02:58:40,325   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:40,325     278 |   if (&(name) == NULL)
2025-09-08T02:58:40,325         |   ^~
2025-09-08T02:58:40,333   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-08T02:58:40,333   ./base/sbml/FunctionDefinition.cpp:1047:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:40,333    1047 |   if (&(sid) != NULL)
2025-09-08T02:58:40,333         |   ^~
2025-09-08T02:58:45,836   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:58:45,836                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:58:45,836                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:58:45,836                    from ./base/sbml/InitialAssignment.cpp:43:
2025-09-08T02:58:45,836   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:45,836      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:58:45,836         |                           ^~~~~~~~~~~~~~
2025-09-08T02:58:45,837   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:58:45,837                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:58:45,838                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:58:45,838                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:58:45,838                    from ./base/sbml/InitialAssignment.cpp:33:
2025-09-08T02:58:45,838   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:45,838     117 |     struct unary_function
2025-09-08T02:58:45,838         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:46,071   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-08T02:58:46,072   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:58:46,072      97 |   if (&orig == NULL)
2025-09-08T02:58:46,072         |             ^
2025-09-08T02:58:46,072   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2025-09-08T02:58:46,072      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2025-09-08T02:58:46,072         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:58:46,073   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-08T02:58:46,073   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:58:46,074     119 |   if (&rhs == NULL)
2025-09-08T02:58:46,074         |            ^
2025-09-08T02:58:46,074   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2025-09-08T02:58:46,074     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2025-09-08T02:58:46,074         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:46,076   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-08T02:58:46,077   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:46,077     232 |   if (&(sid) == NULL)
2025-09-08T02:58:46,077         |              ^
2025-09-08T02:58:46,077   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2025-09-08T02:58:46,077     230 | InitialAssignment::setSymbol (const std::string& sid)
2025-09-08T02:58:46,077         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:46,101   ./base/sbml/InitialAssignment.cpp: At global scope:
2025-09-08T02:58:46,102   ./base/sbml/InitialAssignment.cpp:843:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:46,102     843 | struct IdEqIA : public unary_function<SBase*, bool>
2025-09-08T02:58:46,102         |                        ^~~~~~~~~~~~~~
2025-09-08T02:58:46,102   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:46,102     117 |     struct unary_function
2025-09-08T02:58:46,102         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:46,105   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-08T02:58:46,105   ./base/sbml/InitialAssignment.cpp:868:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:46,105     868 |   if (&(sid) == NULL)
2025-09-08T02:58:46,105         |              ^
2025-09-08T02:58:46,106   ./base/sbml/InitialAssignment.cpp:864:51: note: ‘sid’ declared here
2025-09-08T02:58:46,106     864 | ListOfInitialAssignments::get (const std::string& sid) const
2025-09-08T02:58:46,106         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:46,109   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-08T02:58:46,109   ./base/sbml/InitialAssignment.cpp:896:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:46,109     896 |   if (&(sid) != NULL)
2025-09-08T02:58:46,109         |              ^
2025-09-08T02:58:46,109   ./base/sbml/InitialAssignment.cpp:891:54: note: ‘sid’ declared here
2025-09-08T02:58:46,109     891 | ListOfInitialAssignments::remove (const std::string& sid)
2025-09-08T02:58:46,109         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:46,115   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2025-09-08T02:58:46,115   ./base/sbml/InitialAssignment.cpp:989:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:46,115     989 |   catch (SBMLConstructorException)
2025-09-08T02:58:46,115         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:46,115   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:58:46,116   ./base/sbml/InitialAssignment.cpp:1005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:46,116    1005 |   catch (SBMLConstructorException)
2025-09-08T02:58:46,116         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:46,618   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-08T02:58:46,619   ./base/sbml/InitialAssignment.cpp:868:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:46,619     868 |   if (&(sid) == NULL)
2025-09-08T02:58:46,619         |   ^~
2025-09-08T02:58:46,621   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-08T02:58:46,622   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:46,622      97 |   if (&orig == NULL)
2025-09-08T02:58:46,622         |   ^~
2025-09-08T02:58:46,622   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-08T02:58:46,622   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:46,622     119 |   if (&rhs == NULL)
2025-09-08T02:58:46,622         |   ^~
2025-09-08T02:58:46,625   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-08T02:58:46,625   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:46,625     232 |   if (&(sid) == NULL)
2025-09-08T02:58:46,625         |   ^~
2025-09-08T02:58:46,634   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-08T02:58:46,634   ./base/sbml/InitialAssignment.cpp:896:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:46,634     896 |   if (&(sid) != NULL)
2025-09-08T02:58:46,635         |   ^~
2025-09-08T02:58:52,106   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:58:52,106                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:58:52,106                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:58:52,106                    from ./base/sbml/KineticLaw.cpp:45:
2025-09-08T02:58:52,106   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:52,106      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:58:52,107         |                           ^~~~~~~~~~~~~~
2025-09-08T02:58:52,107   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:58:52,107                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:58:52,107                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:58:52,108                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:58:52,108                    from ./base/sbml/KineticLaw.cpp:33:
2025-09-08T02:58:52,108   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:52,108     117 |     struct unary_function
2025-09-08T02:58:52,108         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:52,343   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-08T02:58:52,344   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:58:52,344     117 |   if (&orig == NULL)
2025-09-08T02:58:52,344         |             ^
2025-09-08T02:58:52,344   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2025-09-08T02:58:52,344     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2025-09-08T02:58:52,344         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:58:52,347   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-08T02:58:52,347   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:58:52,347     143 |   if (&rhs == NULL)
2025-09-08T02:58:52,347         |            ^
2025-09-08T02:58:52,347   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2025-09-08T02:58:52,347     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2025-09-08T02:58:52,348         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:52,359   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-08T02:58:52,359   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-08T02:58:52,359     363 |   if (&(formula) == NULL)
2025-09-08T02:58:52,359         |                  ^
2025-09-08T02:58:52,359   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2025-09-08T02:58:52,360     361 | KineticLaw::setFormula (const std::string& formula)
2025-09-08T02:58:52,360         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T02:58:52,363   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-08T02:58:52,363   ./base/sbml/KineticLaw.cpp:435:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:52,363     435 |   if (&(sid) == NULL)
2025-09-08T02:58:52,363         |              ^
2025-09-08T02:58:52,363   ./base/sbml/KineticLaw.cpp:432:46: note: ‘sid’ declared here
2025-09-08T02:58:52,363     432 | KineticLaw::setTimeUnits (const std::string& sid)
2025-09-08T02:58:52,364         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:52,365   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-08T02:58:52,365   ./base/sbml/KineticLaw.cpp:463:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:52,365     463 |   if (&(sid) == NULL)
2025-09-08T02:58:52,365         |              ^
2025-09-08T02:58:52,365   ./base/sbml/KineticLaw.cpp:460:51: note: ‘sid’ declared here
2025-09-08T02:58:52,366     460 | KineticLaw::setSubstanceUnits (const std::string& sid)
2025-09-08T02:58:52,366         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:52,380   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-08T02:58:52,381   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:52,381    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-08T02:58:52,381         |                ^
2025-09-08T02:58:52,381   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2025-09-08T02:58:52,381    1032 | KineticLaw::removeParameter (const std::string& sid)
2025-09-08T02:58:52,381         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:52,382   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-08T02:58:52,382   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:58:52,382    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-08T02:58:52,382         |                ^
2025-09-08T02:58:52,382   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2025-09-08T02:58:52,383    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2025-09-08T02:58:52,383         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:58:52,409   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2025-09-08T02:58:52,409   ./base/sbml/KineticLaw.cpp:1611:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:52,409    1611 |   catch (SBMLConstructorException)
2025-09-08T02:58:52,409         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:52,410   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:58:52,411   ./base/sbml/KineticLaw.cpp:1627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:58:52,411    1627 |   catch (SBMLConstructorException)
2025-09-08T02:58:52,411         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:58:52,883   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-08T02:58:52,883   ./base/sbml/KineticLaw.cpp:1034:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:52,883    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-08T02:58:52,883         |                         ^
2025-09-08T02:58:52,884   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-08T02:58:52,884   ./base/sbml/KineticLaw.cpp:1045:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:52,884    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-08T02:58:52,884         |                         ^
2025-09-08T02:58:52,888   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-08T02:58:52,888   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:52,889     363 |   if (&(formula) == NULL)
2025-09-08T02:58:52,889         |   ^~
2025-09-08T02:58:52,894   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-08T02:58:52,894   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:52,894     143 |   if (&rhs == NULL)
2025-09-08T02:58:52,894         |   ^~
2025-09-08T02:58:52,899   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-08T02:58:52,899   ./base/sbml/KineticLaw.cpp:435:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:52,899     435 |   if (&(sid) == NULL)
2025-09-08T02:58:52,899         |   ^~
2025-09-08T02:58:52,900   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-08T02:58:52,900   ./base/sbml/KineticLaw.cpp:463:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:52,900     463 |   if (&(sid) == NULL)
2025-09-08T02:58:52,900         |   ^~
2025-09-08T02:58:52,907   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-08T02:58:52,907   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:58:52,907     117 |   if (&orig == NULL)
2025-09-08T02:58:52,907         |   ^~
2025-09-08T02:58:58,520   In file included from ./base/sbml/ListOf.cpp:37:
2025-09-08T02:58:58,520   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:58,520      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:58:58,520         |                           ^~~~~~~~~~~~~~
2025-09-08T02:58:58,520   In file included from /usr/include/c++/14/functional:49,
2025-09-08T02:58:58,520                    from ./base/sbml/ListOf.cpp:34:
2025-09-08T02:58:58,520   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:58,521     117 |     struct unary_function
2025-09-08T02:58:58,521         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:58,694   ./base/sbml/ListOf.cpp:76:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:58,694      76 | struct Delete : public unary_function<SBase*, void>
2025-09-08T02:58:58,694         |                        ^~~~~~~~~~~~~~
2025-09-08T02:58:58,694   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:58,695     117 |     struct unary_function
2025-09-08T02:58:58,695         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:58,697   ./base/sbml/ListOf.cpp:94:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:58,697      94 | struct Clone : public unary_function<SBase*, SBase*>
2025-09-08T02:58:58,697         |                       ^~~~~~~~~~~~~~
2025-09-08T02:58:58,697   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:58,697     117 |     struct unary_function
2025-09-08T02:58:58,697         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:58,714   ./base/sbml/ListOf.cpp:453:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:58,714     453 | struct SetSBMLDocument : public unary_function<SBase*, void>
2025-09-08T02:58:58,714         |                                 ^~~~~~~~~~~~~~
2025-09-08T02:58:58,715   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:58,715     117 |     struct unary_function
2025-09-08T02:58:58,715         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:58,715   ./base/sbml/ListOf.cpp:465:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:58,715     465 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2025-09-08T02:58:58,715         |                                     ^~~~~~~~~~~~~~
2025-09-08T02:58:58,715   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:58,715     117 |     struct unary_function
2025-09-08T02:58:58,715         |            ^~~~~~~~~~~~~~
2025-09-08T02:58:58,718   ./base/sbml/ListOf.cpp:537:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:58:58,718     537 | struct Write : public unary_function<SBase*, void>
2025-09-08T02:58:58,718         |                       ^~~~~~~~~~~~~~
2025-09-08T02:58:58,718   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:58:58,718     117 |     struct unary_function
2025-09-08T02:58:58,718         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:03,441   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:59:03,441                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:59:03,441                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:59:03,441                    from ./base/sbml/LocalParameter.cpp:42:
2025-09-08T02:59:03,441   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:03,442      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:59:03,442         |                           ^~~~~~~~~~~~~~
2025-09-08T02:59:03,442   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:59:03,442                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:59:03,442                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:59:03,442                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:59:03,442                    from ./base/sbml/LocalParameter.cpp:35:
2025-09-08T02:59:03,442   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:03,442     117 |     struct unary_function
2025-09-08T02:59:03,442         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:03,671   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-08T02:59:03,671   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:59:03,671     103 |   if (&orig == NULL)
2025-09-08T02:59:03,671         |             ^
2025-09-08T02:59:03,672   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2025-09-08T02:59:03,672     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2025-09-08T02:59:03,672         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:59:03,672   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-08T02:59:03,672   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:59:03,673     116 |   if (&orig == NULL)
2025-09-08T02:59:03,673         |             ^
2025-09-08T02:59:03,673   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2025-09-08T02:59:03,673     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2025-09-08T02:59:03,673         |                                ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:59:03,673   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-08T02:59:03,673   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:59:03,674     126 |   if (&rhs == NULL)
2025-09-08T02:59:03,674         |            ^
2025-09-08T02:59:03,674   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2025-09-08T02:59:03,674     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2025-09-08T02:59:03,674         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:03,680   ./base/sbml/LocalParameter.cpp: At global scope:
2025-09-08T02:59:03,681   ./base/sbml/LocalParameter.cpp:386:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:03,681     386 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-08T02:59:03,681         |                       ^~~~~~~~~~~~~~
2025-09-08T02:59:03,681   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:03,681     117 |     struct unary_function
2025-09-08T02:59:03,681         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:03,684   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-08T02:59:03,684   ./base/sbml/LocalParameter.cpp:411:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:03,684     411 |   if (&(sid) == NULL)
2025-09-08T02:59:03,684         |              ^
2025-09-08T02:59:03,685   ./base/sbml/LocalParameter.cpp:407:48: note: ‘sid’ declared here
2025-09-08T02:59:03,685     407 | ListOfLocalParameters::get (const std::string& sid) const
2025-09-08T02:59:03,685         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:03,688   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-08T02:59:03,689   ./base/sbml/LocalParameter.cpp:453:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:03,689     453 |   if (&(sid) != NULL)
2025-09-08T02:59:03,689         |              ^
2025-09-08T02:59:03,689   ./base/sbml/LocalParameter.cpp:448:51: note: ‘sid’ declared here
2025-09-08T02:59:03,689     448 | ListOfLocalParameters::remove (const std::string& sid)
2025-09-08T02:59:03,689         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:03,694   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2025-09-08T02:59:03,694   ./base/sbml/LocalParameter.cpp:533:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:03,694     533 |   catch (SBMLConstructorException)
2025-09-08T02:59:03,694         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:03,695   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:59:03,695   ./base/sbml/LocalParameter.cpp:549:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:03,695     549 |   catch (SBMLConstructorException)
2025-09-08T02:59:03,695         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:04,180   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-08T02:59:04,181   ./base/sbml/LocalParameter.cpp:411:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:04,181     411 |   if (&(sid) == NULL)
2025-09-08T02:59:04,181         |   ^~
2025-09-08T02:59:04,183   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-08T02:59:04,183   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:04,183     103 |   if (&orig == NULL)
2025-09-08T02:59:04,183         |   ^~
2025-09-08T02:59:04,184   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-08T02:59:04,184   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:04,184     116 |   if (&orig == NULL)
2025-09-08T02:59:04,184         |   ^~
2025-09-08T02:59:04,184   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-08T02:59:04,184   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:04,184     126 |   if (&rhs == NULL)
2025-09-08T02:59:04,184         |   ^~
2025-09-08T02:59:04,191   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-08T02:59:04,191   ./base/sbml/LocalParameter.cpp:453:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:04,191     453 |   if (&(sid) != NULL)
2025-09-08T02:59:04,192         |   ^~
2025-09-08T02:59:08,444   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:59:08,444                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:59:08,444                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:59:08,444                    from ./base/sbml/Model.cpp:41:
2025-09-08T02:59:08,444   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:08,444      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:59:08,444         |                           ^~~~~~~~~~~~~~
2025-09-08T02:59:08,445   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:59:08,445                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:59:08,446                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:59:08,446                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:59:08,446                    from ./base/sbml/Model.cpp:33:
2025-09-08T02:59:08,446   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:08,446     117 |     struct unary_function
2025-09-08T02:59:08,446         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:08,769   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-08T02:59:08,769   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:59:08,769     175 |   if (&orig == NULL)
2025-09-08T02:59:08,769         |             ^
2025-09-08T02:59:08,770   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2025-09-08T02:59:08,770     160 | Model::Model(const Model& orig) :
2025-09-08T02:59:08,770         |              ~~~~~~~~~~~~~^~~~
2025-09-08T02:59:08,774   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-08T02:59:08,774   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:59:08,774     216 |   if (&rhs == NULL)
2025-09-08T02:59:08,774         |            ^
2025-09-08T02:59:08,774   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2025-09-08T02:59:08,775     214 | Model& Model::operator=(const Model& rhs)
2025-09-08T02:59:08,775         |                         ~~~~~~~~~~~~~^~~
2025-09-08T02:59:08,818   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-08T02:59:08,819   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:08,819     718 |   if (&(sid) == NULL)
2025-09-08T02:59:08,819         |              ^
2025-09-08T02:59:08,819   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2025-09-08T02:59:08,819     707 | Model::setId (const std::string& sid)
2025-09-08T02:59:08,819         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:08,820   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-08T02:59:08,821   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:59:08,821     743 |   if (&(name) == NULL)
2025-09-08T02:59:08,821         |               ^
2025-09-08T02:59:08,821   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2025-09-08T02:59:08,821     738 | Model::setName (const std::string& name)
2025-09-08T02:59:08,821         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:59:08,822   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-08T02:59:08,823   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T02:59:08,823     773 |   if (&(units) == NULL)
2025-09-08T02:59:08,823         |                ^
2025-09-08T02:59:08,823   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2025-09-08T02:59:08,823     771 | Model::setSubstanceUnits (const std::string& units)
2025-09-08T02:59:08,823         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:59:08,824   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-08T02:59:08,825   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T02:59:08,825     799 |   if (&(units) == NULL)
2025-09-08T02:59:08,825         |                ^
2025-09-08T02:59:08,825   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2025-09-08T02:59:08,825     797 | Model::setTimeUnits (const std::string& units)
2025-09-08T02:59:08,825         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:59:08,826   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-08T02:59:08,826   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T02:59:08,827     825 |   if (&(units) == NULL)
2025-09-08T02:59:08,827         |                ^
2025-09-08T02:59:08,827   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2025-09-08T02:59:08,827     823 | Model::setVolumeUnits (const std::string& units)
2025-09-08T02:59:08,827         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:59:08,828   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-08T02:59:08,828   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T02:59:08,828     851 |   if (&(units) == NULL)
2025-09-08T02:59:08,829         |                ^
2025-09-08T02:59:08,829   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2025-09-08T02:59:08,829     849 | Model::setAreaUnits (const std::string& units)
2025-09-08T02:59:08,829         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:59:08,830   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-08T02:59:08,830   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T02:59:08,830     877 |   if (&(units) == NULL)
2025-09-08T02:59:08,830         |                ^
2025-09-08T02:59:08,831   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2025-09-08T02:59:08,831     875 | Model::setLengthUnits (const std::string& units)
2025-09-08T02:59:08,831         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:59:08,832   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-08T02:59:08,832   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T02:59:08,832     903 |   if (&(units) == NULL)
2025-09-08T02:59:08,832         |                ^
2025-09-08T02:59:08,833   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2025-09-08T02:59:08,833     901 | Model::setExtentUnits (const std::string& units)
2025-09-08T02:59:08,833         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:59:08,834   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-08T02:59:08,834   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-08T02:59:08,834     929 |   if (&(id) == NULL)
2025-09-08T02:59:08,834         |             ^
2025-09-08T02:59:08,835   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2025-09-08T02:59:08,835     927 | Model::setConversionFactor (const std::string& id)
2025-09-08T02:59:08,835         |                             ~~~~~~~~~~~~~~~~~~~^~
2025-09-08T02:59:09,016   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2025-09-08T02:59:09,016   ./base/sbml/Model.cpp:6000:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:09,016    6000 |   catch (SBMLConstructorException)
2025-09-08T02:59:09,016         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:09,017   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:59:09,017   ./base/sbml/Model.cpp:6016:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:09,017    6016 |   catch (SBMLConstructorException)
2025-09-08T02:59:09,018         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:09,721   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-08T02:59:09,721   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,721     216 |   if (&rhs == NULL)
2025-09-08T02:59:09,722         |   ^~
2025-09-08T02:59:09,733   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-08T02:59:09,733   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,734     718 |   if (&(sid) == NULL)
2025-09-08T02:59:09,734         |   ^~
2025-09-08T02:59:09,734   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-08T02:59:09,734   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,734     743 |   if (&(name) == NULL)
2025-09-08T02:59:09,734         |   ^~
2025-09-08T02:59:09,735   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-08T02:59:09,735   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,735     773 |   if (&(units) == NULL)
2025-09-08T02:59:09,735         |   ^~
2025-09-08T02:59:09,736   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-08T02:59:09,736   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,736     799 |   if (&(units) == NULL)
2025-09-08T02:59:09,736         |   ^~
2025-09-08T02:59:09,737   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-08T02:59:09,737   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,737     825 |   if (&(units) == NULL)
2025-09-08T02:59:09,737         |   ^~
2025-09-08T02:59:09,738   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-08T02:59:09,738   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,738     851 |   if (&(units) == NULL)
2025-09-08T02:59:09,738         |   ^~
2025-09-08T02:59:09,739   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-08T02:59:09,739   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,739     877 |   if (&(units) == NULL)
2025-09-08T02:59:09,739         |   ^~
2025-09-08T02:59:09,740   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-08T02:59:09,740   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,740     903 |   if (&(units) == NULL)
2025-09-08T02:59:09,740         |   ^~
2025-09-08T02:59:09,741   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-08T02:59:09,741   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,741     929 |   if (&(id) == NULL)
2025-09-08T02:59:09,742         |   ^~
2025-09-08T02:59:09,776   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-08T02:59:09,776   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:09,776     175 |   if (&orig == NULL)
2025-09-08T02:59:09,776         |   ^~
2025-09-08T02:59:15,103   ./base/sbml/Model.cpp: In member function ‘void Model::populateListFormulaUnitsData()’:
2025-09-08T02:59:15,103   ./base/sbml/Model.cpp:5681:29: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
2025-09-08T02:59:15,103    5681 |       sprintf(newId, "event_%u", countEvents);
2025-09-08T02:59:15,103         |                             ^~
2025-09-08T02:59:15,104   ./base/sbml/Model.cpp:5681:22: note: directive argument in the range [0, 4294967294]
2025-09-08T02:59:15,104    5681 |       sprintf(newId, "event_%u", countEvents);
2025-09-08T02:59:15,104         |                      ^~~~~~~~~~
2025-09-08T02:59:15,104   ./base/sbml/Model.cpp:5681:14: note: ‘sprintf’ output between 8 and 17 bytes into a destination of size 12
2025-09-08T02:59:15,104    5681 |       sprintf(newId, "event_%u", countEvents);
2025-09-08T02:59:15,104         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:25,479   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:59:25,479                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:59:25,479                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:59:25,479                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2025-09-08T02:59:25,479   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:25,479      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:59:25,479         |                           ^~~~~~~~~~~~~~
2025-09-08T02:59:25,480   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:59:25,480                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:59:25,480                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:59:25,480                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:59:25,480                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2025-09-08T02:59:25,481   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:25,481     117 |     struct unary_function
2025-09-08T02:59:25,481         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:29,226   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:59:29,226                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:59:29,227                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:59:29,227                    from ./base/sbml/Parameter.cpp:42:
2025-09-08T02:59:29,227   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:29,227      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:59:29,227         |                           ^~~~~~~~~~~~~~
2025-09-08T02:59:29,227   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:59:29,227                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:59:29,227                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:59:29,227                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:59:29,228                    from ./base/sbml/Parameter.cpp:35:
2025-09-08T02:59:29,228   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:29,228     117 |     struct unary_function
2025-09-08T02:59:29,228         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:29,461   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-08T02:59:29,462   ./base/sbml/Parameter.cpp:131:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:59:29,462     131 |   if (&orig == NULL)
2025-09-08T02:59:29,462         |             ^
2025-09-08T02:59:29,462   ./base/sbml/Parameter.cpp:128:39: note: ‘orig’ declared here
2025-09-08T02:59:29,462     128 | Parameter::Parameter(const Parameter& orig) :
2025-09-08T02:59:29,462         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:59:29,463   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-08T02:59:29,464   ./base/sbml/Parameter.cpp:155:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:59:29,464     155 |   if (&rhs == NULL)
2025-09-08T02:59:29,464         |            ^
2025-09-08T02:59:29,464   ./base/sbml/Parameter.cpp:153:50: note: ‘rhs’ declared here
2025-09-08T02:59:29,464     153 | Parameter& Parameter::operator=(const Parameter& rhs)
2025-09-08T02:59:29,464         |                                 ~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:29,467   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-08T02:59:29,468   ./base/sbml/Parameter.cpp:342:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:29,468     342 |   if (&(sid) == NULL)
2025-09-08T02:59:29,468         |              ^
2025-09-08T02:59:29,468   ./base/sbml/Parameter.cpp:331:38: note: ‘sid’ declared here
2025-09-08T02:59:29,468     331 | Parameter::setId (const std::string& sid)
2025-09-08T02:59:29,468         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:29,468   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-08T02:59:29,468   ./base/sbml/Parameter.cpp:367:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:59:29,469     367 |   if (&(name) == NULL)
2025-09-08T02:59:29,469         |               ^
2025-09-08T02:59:29,469   ./base/sbml/Parameter.cpp:362:40: note: ‘name’ declared here
2025-09-08T02:59:29,469     362 | Parameter::setName (const std::string& name)
2025-09-08T02:59:29,469         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:59:29,470   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-08T02:59:29,470   ./base/sbml/Parameter.cpp:409:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T02:59:29,470     409 |   if (&(units) == NULL)
2025-09-08T02:59:29,470         |                ^
2025-09-08T02:59:29,470   ./base/sbml/Parameter.cpp:407:41: note: ‘units’ declared here
2025-09-08T02:59:29,470     407 | Parameter::setUnits (const std::string& units)
2025-09-08T02:59:29,470         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:59:29,522   ./base/sbml/Parameter.cpp: At global scope:
2025-09-08T02:59:29,523   ./base/sbml/Parameter.cpp:1523:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:29,523    1523 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-08T02:59:29,523         |                       ^~~~~~~~~~~~~~
2025-09-08T02:59:29,523   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:29,523     117 |     struct unary_function
2025-09-08T02:59:29,523         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:29,526   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-08T02:59:29,526   ./base/sbml/Parameter.cpp:1546:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:29,526    1546 |   if (&(sid) == NULL)
2025-09-08T02:59:29,526         |              ^
2025-09-08T02:59:29,526   ./base/sbml/Parameter.cpp:1542:43: note: ‘sid’ declared here
2025-09-08T02:59:29,527    1542 | ListOfParameters::get (const std::string& sid) const
2025-09-08T02:59:29,527         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:29,529   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-08T02:59:29,530   ./base/sbml/Parameter.cpp:1573:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:29,530    1573 |   if (&(sid) != NULL)
2025-09-08T02:59:29,530         |              ^
2025-09-08T02:59:29,530   ./base/sbml/Parameter.cpp:1568:46: note: ‘sid’ declared here
2025-09-08T02:59:29,530    1568 | ListOfParameters::remove (const std::string& sid)
2025-09-08T02:59:29,530         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:29,535   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2025-09-08T02:59:29,535   ./base/sbml/Parameter.cpp:1653:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:29,535    1653 |   catch (SBMLConstructorException)
2025-09-08T02:59:29,535         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:29,536   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:59:29,536   ./base/sbml/Parameter.cpp:1669:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:29,536    1669 |   catch (SBMLConstructorException)
2025-09-08T02:59:29,536         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:30,063   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-08T02:59:30,063   ./base/sbml/Parameter.cpp:1546:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:30,063    1546 |   if (&(sid) == NULL)
2025-09-08T02:59:30,063         |   ^~
2025-09-08T02:59:30,066   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-08T02:59:30,066   ./base/sbml/Parameter.cpp:131:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:30,066     131 |   if (&orig == NULL)
2025-09-08T02:59:30,066         |   ^~
2025-09-08T02:59:30,066   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-08T02:59:30,066   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:30,066     155 |   if (&rhs == NULL)
2025-09-08T02:59:30,067         |   ^~
2025-09-08T02:59:30,069   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-08T02:59:30,069   ./base/sbml/Parameter.cpp:342:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:30,069     342 |   if (&(sid) == NULL)
2025-09-08T02:59:30,069         |   ^~
2025-09-08T02:59:30,069   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-08T02:59:30,069   ./base/sbml/Parameter.cpp:367:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:30,069     367 |   if (&(name) == NULL)
2025-09-08T02:59:30,069         |   ^~
2025-09-08T02:59:30,069   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-08T02:59:30,070   ./base/sbml/Parameter.cpp:409:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:30,070     409 |   if (&(units) == NULL)
2025-09-08T02:59:30,070         |   ^~
2025-09-08T02:59:30,086   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-08T02:59:30,087   ./base/sbml/Parameter.cpp:1573:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:30,087    1573 |   if (&(sid) != NULL)
2025-09-08T02:59:30,087         |   ^~
2025-09-08T02:59:38,371   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:59:38,372                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:59:38,372                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:59:38,372                    from ./base/sbml/Priority.cpp:45:
2025-09-08T02:59:38,372   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:38,372      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:59:38,372         |                           ^~~~~~~~~~~~~~
2025-09-08T02:59:38,372   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:59:38,372                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:59:38,373                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:59:38,373                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:59:38,373                    from ./base/sbml/Priority.cpp:33:
2025-09-08T02:59:38,373   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:38,373     117 |     struct unary_function
2025-09-08T02:59:38,373         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:38,602   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-08T02:59:38,603   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:59:38,603     100 |   if (&orig == NULL)
2025-09-08T02:59:38,603         |             ^
2025-09-08T02:59:38,603   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2025-09-08T02:59:38,603      96 | Priority::Priority (const Priority& orig) :
2025-09-08T02:59:38,603         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:59:38,604   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-08T02:59:38,604   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:59:38,604     122 |   if (&rhs == NULL)
2025-09-08T02:59:38,605         |            ^
2025-09-08T02:59:38,605   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2025-09-08T02:59:38,605     120 | Priority& Priority::operator=(const Priority& rhs)
2025-09-08T02:59:38,605         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:38,618   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2025-09-08T02:59:38,618   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:38,618     503 |   catch (SBMLConstructorException)
2025-09-08T02:59:38,618         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:38,619   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:59:38,619   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:38,619     519 |   catch (SBMLConstructorException)
2025-09-08T02:59:38,619         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:39,046   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-08T02:59:39,046   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:39,046     100 |   if (&orig == NULL)
2025-09-08T02:59:39,046         |   ^~
2025-09-08T02:59:39,046   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-08T02:59:39,046   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:39,046     122 |   if (&rhs == NULL)
2025-09-08T02:59:39,046         |   ^~
2025-09-08T02:59:42,695   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:59:42,695                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:59:42,695                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:59:42,695                    from ./base/sbml/RateRule.cpp:49:
2025-09-08T02:59:42,696   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:42,696      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:59:42,696         |                           ^~~~~~~~~~~~~~
2025-09-08T02:59:42,697   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:59:42,697                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:59:42,697                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:59:42,697                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:59:42,697                    from ./base/sbml/RateRule.cpp:34:
2025-09-08T02:59:42,697   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:42,697     117 |     struct unary_function
2025-09-08T02:59:42,697         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:46,324   In file included from ./base//sbml/SpeciesReference.h:286,
2025-09-08T02:59:46,324                    from ./base/sbml/Reaction.cpp:40:
2025-09-08T02:59:46,324   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:46,324      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:59:46,324         |                           ^~~~~~~~~~~~~~
2025-09-08T02:59:46,325   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:59:46,325                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:59:46,325                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:59:46,325                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:59:46,325                    from ./base/sbml/Reaction.cpp:33:
2025-09-08T02:59:46,325   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:46,325     117 |     struct unary_function
2025-09-08T02:59:46,325         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:46,679   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-08T02:59:46,679   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:59:46,679     185 |   if (&orig == NULL)
2025-09-08T02:59:46,679         |             ^
2025-09-08T02:59:46,679   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2025-09-08T02:59:46,679     178 | Reaction::Reaction (const Reaction& orig) :
2025-09-08T02:59:46,679         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:59:46,681   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-08T02:59:46,681   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:59:46,681     215 |   if (&rhs == NULL)
2025-09-08T02:59:46,681         |            ^
2025-09-08T02:59:46,682   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2025-09-08T02:59:46,682     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2025-09-08T02:59:46,682         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:46,697   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-08T02:59:46,697   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:46,697     549 |   if (&(sid) == NULL)
2025-09-08T02:59:46,697         |              ^
2025-09-08T02:59:46,697   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2025-09-08T02:59:46,697     538 | Reaction::setId (const std::string& sid)
2025-09-08T02:59:46,697         |                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:46,698   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-08T02:59:46,698   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T02:59:46,698     574 |   if (&(name) == NULL)
2025-09-08T02:59:46,698         |               ^
2025-09-08T02:59:46,698   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2025-09-08T02:59:46,698     569 | Reaction::setName (const std::string& name)
2025-09-08T02:59:46,698         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T02:59:46,701   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-08T02:59:46,701   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:46,701     665 |   if (&(sid) == NULL)
2025-09-08T02:59:46,701         |              ^
2025-09-08T02:59:46,701   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2025-09-08T02:59:46,701     663 | Reaction::setCompartment (const std::string& sid)
2025-09-08T02:59:46,701         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:46,749   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-08T02:59:46,749   ./base/sbml/Reaction.cpp:1900:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:46,750    1900 |   if (&(sid) == NULL)
2025-09-08T02:59:46,750         |              ^
2025-09-08T02:59:46,750   ./base/sbml/Reaction.cpp:1896:42: note: ‘sid’ declared here
2025-09-08T02:59:46,750    1896 | ListOfReactions::get (const std::string& sid) const
2025-09-08T02:59:46,750         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:46,753   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-08T02:59:46,753   ./base/sbml/Reaction.cpp:1927:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:46,753    1927 |   if (&(sid) != NULL)
2025-09-08T02:59:46,754         |              ^
2025-09-08T02:59:46,754   ./base/sbml/Reaction.cpp:1922:45: note: ‘sid’ declared here
2025-09-08T02:59:46,754    1922 | ListOfReactions::remove (const std::string& sid)
2025-09-08T02:59:46,754         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:46,758   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2025-09-08T02:59:46,759   ./base/sbml/Reaction.cpp:2005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:46,759    2005 |   catch (SBMLConstructorException)
2025-09-08T02:59:46,759         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:46,759   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:59:46,759   ./base/sbml/Reaction.cpp:2021:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:46,759    2021 |   catch (SBMLConstructorException)
2025-09-08T02:59:46,760         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:47,311   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-08T02:59:47,311   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:47,311     215 |   if (&rhs == NULL)
2025-09-08T02:59:47,311         |   ^~
2025-09-08T02:59:47,316   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-08T02:59:47,316   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:47,316     549 |   if (&(sid) == NULL)
2025-09-08T02:59:47,316         |   ^~
2025-09-08T02:59:47,317   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-08T02:59:47,317   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:47,317     574 |   if (&(name) == NULL)
2025-09-08T02:59:47,317         |   ^~
2025-09-08T02:59:47,317   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-08T02:59:47,317   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:47,317     665 |   if (&(sid) == NULL)
2025-09-08T02:59:47,317         |   ^~
2025-09-08T02:59:47,320   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-08T02:59:47,320   ./base/sbml/Reaction.cpp:1900:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:47,320    1900 |   if (&(sid) == NULL)
2025-09-08T02:59:47,320         |   ^~
2025-09-08T02:59:47,328   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-08T02:59:47,328   ./base/sbml/Reaction.cpp:1927:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:47,328    1927 |   if (&(sid) != NULL)
2025-09-08T02:59:47,328         |   ^~
2025-09-08T02:59:47,331   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-08T02:59:47,331   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:47,331     185 |   if (&orig == NULL)
2025-09-08T02:59:47,331         |   ^~
2025-09-08T02:59:54,890   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T02:59:54,890                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T02:59:54,890                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T02:59:54,890                    from ./base/sbml/Rule.cpp:49:
2025-09-08T02:59:54,890   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:54,890      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T02:59:54,890         |                           ^~~~~~~~~~~~~~
2025-09-08T02:59:54,890   In file included from /usr/include/c++/14/string:49,
2025-09-08T02:59:54,891                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T02:59:54,891                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T02:59:54,891                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T02:59:54,891                    from ./base/sbml/Rule.cpp:34:
2025-09-08T02:59:54,891   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:54,891     117 |     struct unary_function
2025-09-08T02:59:54,891         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:55,122   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-08T02:59:55,123   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T02:59:55,123     110 |   if (&orig == NULL)
2025-09-08T02:59:55,123         |             ^
2025-09-08T02:59:55,123   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2025-09-08T02:59:55,123     106 | Rule::Rule (const Rule& orig) :
2025-09-08T02:59:55,123         |             ~~~~~~~~~~~~^~~~
2025-09-08T02:59:55,125   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-08T02:59:55,125   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T02:59:55,125     137 |   if (&rhs == NULL)
2025-09-08T02:59:55,125         |            ^
2025-09-08T02:59:55,125   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2025-09-08T02:59:55,126     135 | Rule& Rule::operator=(const Rule& rhs)
2025-09-08T02:59:55,126         |                       ~~~~~~~~~~~~^~~
2025-09-08T02:59:55,131   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-08T02:59:55,131   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-08T02:59:55,131     326 |   if (&(formula) == NULL)
2025-09-08T02:59:55,131         |                  ^
2025-09-08T02:59:55,131   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2025-09-08T02:59:55,131     324 | Rule::setFormula (const std::string& formula)
2025-09-08T02:59:55,132         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T02:59:55,134   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-08T02:59:55,135   ./base/sbml/Rule.cpp:400:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:55,135     400 |   if (&(sid) == NULL)
2025-09-08T02:59:55,135         |              ^
2025-09-08T02:59:55,135   ./base/sbml/Rule.cpp:398:39: note: ‘sid’ declared here
2025-09-08T02:59:55,135     398 | Rule::setVariable (const std::string& sid)
2025-09-08T02:59:55,135         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:55,135   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-08T02:59:55,135   ./base/sbml/Rule.cpp:428:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2025-09-08T02:59:55,136     428 |   if (&(sname) == NULL)
2025-09-08T02:59:55,136         |                ^
2025-09-08T02:59:55,136   ./base/sbml/Rule.cpp:425:36: note: ‘sname’ declared here
2025-09-08T02:59:55,136     425 | Rule::setUnits (const std::string& sname)
2025-09-08T02:59:55,136         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T02:59:55,182   ./base/sbml/Rule.cpp: At global scope:
2025-09-08T02:59:55,182   ./base/sbml/Rule.cpp:1417:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T02:59:55,182    1417 | struct IdEqRule : public unary_function<SBase*, bool>
2025-09-08T02:59:55,183         |                          ^~~~~~~~~~~~~~
2025-09-08T02:59:55,183   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T02:59:55,183     117 |     struct unary_function
2025-09-08T02:59:55,183         |            ^~~~~~~~~~~~~~
2025-09-08T02:59:55,186   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-08T02:59:55,186   ./base/sbml/Rule.cpp:1442:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:55,186    1442 |   if (&(sid) == NULL)
2025-09-08T02:59:55,186         |              ^
2025-09-08T02:59:55,186   ./base/sbml/Rule.cpp:1438:38: note: ‘sid’ declared here
2025-09-08T02:59:55,186    1438 | ListOfRules::get (const std::string& sid) const
2025-09-08T02:59:55,186         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:55,190   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-08T02:59:55,190   ./base/sbml/Rule.cpp:1483:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T02:59:55,190    1483 |   if (&(sid) != NULL)
2025-09-08T02:59:55,190         |              ^
2025-09-08T02:59:55,190   ./base/sbml/Rule.cpp:1478:41: note: ‘sid’ declared here
2025-09-08T02:59:55,190    1478 | ListOfRules::remove (const std::string& sid)
2025-09-08T02:59:55,191         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T02:59:55,205   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2025-09-08T02:59:55,205   ./base/sbml/Rule.cpp:1672:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:55,205    1672 |   catch (SBMLConstructorException)
2025-09-08T02:59:55,205         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:55,206   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:59:55,206   ./base/sbml/Rule.cpp:1688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:55,206    1688 |   catch (SBMLConstructorException)
2025-09-08T02:59:55,206         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:55,207   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2025-09-08T02:59:55,207   ./base/sbml/Rule.cpp:1704:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:55,207    1704 |   catch (SBMLConstructorException)
2025-09-08T02:59:55,207         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:55,207   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:59:55,208   ./base/sbml/Rule.cpp:1720:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:55,208    1720 |   catch (SBMLConstructorException)
2025-09-08T02:59:55,208         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:55,208   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2025-09-08T02:59:55,208   ./base/sbml/Rule.cpp:1736:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:55,209    1736 |   catch (SBMLConstructorException)
2025-09-08T02:59:55,209         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:55,209   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2025-09-08T02:59:55,209   ./base/sbml/Rule.cpp:1752:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T02:59:55,209    1752 |   catch (SBMLConstructorException)
2025-09-08T02:59:55,209         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T02:59:55,734   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-08T02:59:55,734   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:55,734     326 |   if (&(formula) == NULL)
2025-09-08T02:59:55,734         |   ^~
2025-09-08T02:59:55,741   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-08T02:59:55,741   ./base/sbml/Rule.cpp:1442:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:55,741    1442 |   if (&(sid) == NULL)
2025-09-08T02:59:55,741         |   ^~
2025-09-08T02:59:55,745   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-08T02:59:55,745   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:55,745     110 |   if (&orig == NULL)
2025-09-08T02:59:55,746         |   ^~
2025-09-08T02:59:55,746   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-08T02:59:55,746   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:55,746     137 |   if (&rhs == NULL)
2025-09-08T02:59:55,746         |   ^~
2025-09-08T02:59:55,748   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-08T02:59:55,748   ./base/sbml/Rule.cpp:400:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:55,749     400 |   if (&(sid) == NULL)
2025-09-08T02:59:55,749         |   ^~
2025-09-08T02:59:55,749   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-08T02:59:55,749   ./base/sbml/Rule.cpp:428:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:55,749     428 |   if (&(sname) == NULL)
2025-09-08T02:59:55,749         |   ^~
2025-09-08T02:59:55,761   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-08T02:59:55,761   ./base/sbml/Rule.cpp:1483:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T02:59:55,761    1483 |   if (&(sid) != NULL)
2025-09-08T02:59:55,761         |   ^~
2025-09-08T03:00:05,888   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:00:05,888                    from ./base//sbml/Model.h:409,
2025-09-08T03:00:05,888                    from ./base/sbml/SBMLConvert.cpp:37:
2025-09-08T03:00:05,889   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:05,889      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:00:05,889         |                           ^~~~~~~~~~~~~~
2025-09-08T03:00:05,890   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:00:05,890                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:00:05,890                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:00:05,890                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T03:00:05,890                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T03:00:05,890                    from ./base//sbml/math/ASTNode.h:147,
2025-09-08T03:00:05,890                    from ./base/sbml/SBMLConvert.cpp:34:
2025-09-08T03:00:05,890   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:05,890     117 |     struct unary_function
2025-09-08T03:00:05,890         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:06,090   ./base/sbml/SBMLConvert.cpp: In member function ‘void Model::addDefinitionsForDefaultUnits()’:
2025-09-08T03:00:06,090   ./base/sbml/SBMLConvert.cpp:416:8: warning: variable ‘implicitArea’ set but not used [-Wunused-but-set-variable]
2025-09-08T03:00:06,090     416 |   bool implicitArea = false;
2025-09-08T03:00:06,090         |        ^~~~~~~~~~~~
2025-09-08T03:00:13,759   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:00:13,759                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:00:13,759                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:00:13,760                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:00:13,760                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T03:00:13,760                    from ./base//sbml/validator/SBMLInternalValidator.h:64,
2025-09-08T03:00:13,760                    from ./base/sbml/SBMLDocument.cpp:44:
2025-09-08T03:00:13,760   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:13,760      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:00:13,760         |                           ^~~~~~~~~~~~~~
2025-09-08T03:00:13,760   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:00:13,761                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:00:13,761                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:00:13,761                    from /usr/include/c++/14/ios:44,
2025-09-08T03:00:13,761                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:00:13,761                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:00:13,761                    from ./base/sbml/SBMLDocument.cpp:35:
2025-09-08T03:00:13,761   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:13,761     117 |     struct unary_function
2025-09-08T03:00:13,761         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:14,112   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-08T03:00:14,112   ./base/sbml/SBMLDocument.cpp:261:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:00:14,112     261 |   if (&orig == NULL)
2025-09-08T03:00:14,112         |             ^
2025-09-08T03:00:14,112   ./base/sbml/SBMLDocument.cpp:256:49: note: ‘orig’ declared here
2025-09-08T03:00:14,113     256 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2025-09-08T03:00:14,113         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:00:14,115   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-08T03:00:14,115   ./base/sbml/SBMLDocument.cpp:302:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:00:14,115     302 |   if (&rhs == NULL)
2025-09-08T03:00:14,115         |            ^
2025-09-08T03:00:14,115   ./base/sbml/SBMLDocument.cpp:300:59: note: ‘rhs’ declared here
2025-09-08T03:00:14,115     300 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2025-09-08T03:00:14,115         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:00:14,231   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2025-09-08T03:00:14,231   ./base/sbml/SBMLDocument.cpp:1868:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:00:14,231    1868 |   catch (SBMLConstructorException)
2025-09-08T03:00:14,231         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:00:14,232   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2025-09-08T03:00:14,232   ./base/sbml/SBMLDocument.cpp:1884:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:00:14,232    1884 |   catch (SBMLConstructorException)
2025-09-08T03:00:14,232         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:00:14,233   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2025-09-08T03:00:14,233   ./base/sbml/SBMLDocument.cpp:1900:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:00:14,233    1900 |   catch (SBMLConstructorException)
2025-09-08T03:00:14,233         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:00:14,912   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-08T03:00:14,912   ./base/sbml/SBMLDocument.cpp:302:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:00:14,912     302 |   if (&rhs == NULL)
2025-09-08T03:00:14,912         |   ^~
2025-09-08T03:00:14,940   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-08T03:00:14,940   ./base/sbml/SBMLDocument.cpp:261:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:00:14,940     261 |   if (&orig == NULL)
2025-09-08T03:00:14,941         |   ^~
2025-09-08T03:00:23,631   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:00:23,631                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:00:23,631                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:00:23,631                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:00:23,631                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:00:23,631                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T03:00:23,631                    from ./base/sbml/SBMLError.cpp:41:
2025-09-08T03:00:23,632   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:23,632      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:00:23,632         |                           ^~~~~~~~~~~~~~
2025-09-08T03:00:23,632   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:00:23,633                    from ./base/sbml/SBMLError.cpp:33:
2025-09-08T03:00:23,633   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:23,633     117 |     struct unary_function
2025-09-08T03:00:23,633         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:28,184   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:28,184      86 | struct Delete : public unary_function<XMLError*, void>
2025-09-08T03:00:28,184         |                        ^~~~~~~~~~~~~~
2025-09-08T03:00:28,185   In file included from /usr/include/c++/14/functional:49,
2025-09-08T03:00:28,185                    from ./base/sbml/SBMLErrorLog.cpp:34:
2025-09-08T03:00:28,185   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:28,185     117 |     struct unary_function
2025-09-08T03:00:28,185         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:31,706   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:00:31,706                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:00:31,706                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:00:31,706                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:00:31,706                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:00:31,707                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T03:00:31,707                    from ./base/sbml/SBMLNamespaces.cpp:35:
2025-09-08T03:00:31,707   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:31,707      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:00:31,707         |                           ^~~~~~~~~~~~~~
2025-09-08T03:00:31,707   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:00:31,707                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:00:31,707                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:00:31,707                    from ./base/sbml/SBMLNamespaces.cpp:34:
2025-09-08T03:00:31,708   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:31,708     117 |     struct unary_function
2025-09-08T03:00:31,708         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:32,003   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-08T03:00:32,003   ./base/sbml/SBMLNamespaces.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:00:32,003     175 |   if (&orig == NULL)
2025-09-08T03:00:32,003         |             ^
2025-09-08T03:00:32,003   ./base/sbml/SBMLNamespaces.cpp:173:54: note: ‘orig’ declared here
2025-09-08T03:00:32,004     173 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2025-09-08T03:00:32,004         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:00:32,007   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-08T03:00:32,007   ./base/sbml/SBMLNamespaces.cpp:225:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:00:32,007     225 |   if (&rhs == NULL)
2025-09-08T03:00:32,007         |            ^
2025-09-08T03:00:32,007   ./base/sbml/SBMLNamespaces.cpp:223:49: note: ‘rhs’ declared here
2025-09-08T03:00:32,007     223 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2025-09-08T03:00:32,007         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:00:32,481   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-08T03:00:32,481   ./base/sbml/SBMLNamespaces.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:00:32,481     175 |   if (&orig == NULL)
2025-09-08T03:00:32,481         |   ^~
2025-09-08T03:00:32,481   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-08T03:00:32,482   ./base/sbml/SBMLNamespaces.cpp:225:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:00:32,482     225 |   if (&rhs == NULL)
2025-09-08T03:00:32,482         |   ^~
2025-09-08T03:00:37,259   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:00:37,259                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:00:37,259                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:00:37,259                    from ./base/sbml/SBMLReader.cpp:39:
2025-09-08T03:00:37,259   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:37,259      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:00:37,259         |                           ^~~~~~~~~~~~~~
2025-09-08T03:00:37,260   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:00:37,260                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:00:37,260                    from ./base/sbml/SBMLReader.cpp:33:
2025-09-08T03:00:37,260   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:37,260     117 |     struct unary_function
2025-09-08T03:00:37,261         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:37,492   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2025-09-08T03:00:37,492   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2025-09-08T03:00:37,493     139 |   if (&xml == NULL) return NULL;
2025-09-08T03:00:37,493         |            ^
2025-09-08T03:00:37,493   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2025-09-08T03:00:37,493     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2025-09-08T03:00:37,493         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:00:37,937   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:00:37,938     139 |   if (&xml == NULL) return NULL;
2025-09-08T03:00:37,938         |   ^~
2025-09-08T03:00:41,663   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:00:41,663                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:00:41,663                    from ./base/sbml/SBMLTransforms.cpp:33:
2025-09-08T03:00:41,663   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:41,663      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:00:41,663         |                           ^~~~~~~~~~~~~~
2025-09-08T03:00:41,663   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:00:41,664                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:00:41,664                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:00:41,664                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:00:41,664                    from ./base//sbml/SBase.h:154,
2025-09-08T03:00:41,664                    from ./base//sbml/SBMLTransforms.h:45:
2025-09-08T03:00:41,664   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:41,664     117 |     struct unary_function
2025-09-08T03:00:41,664         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:49,905   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:00:49,905                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:00:49,905                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:00:49,905                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:00:49,905                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:00:49,905                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2025-09-08T03:00:49,905   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:49,905      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:00:49,905         |                           ^~~~~~~~~~~~~~
2025-09-08T03:00:49,906   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:00:49,906                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:00:49,906                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:00:49,907                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T03:00:49,907   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:49,907     117 |     struct unary_function
2025-09-08T03:00:49,907         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:53,646   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:00:53,646                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:00:53,646                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:00:53,646                    from ./base/sbml/SBMLVisitor.cpp:34:
2025-09-08T03:00:53,646   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:53,646      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:00:53,646         |                           ^~~~~~~~~~~~~~
2025-09-08T03:00:53,646   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:00:53,647                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:00:53,647                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:00:53,647                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T03:00:53,647   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:53,647     117 |     struct unary_function
2025-09-08T03:00:53,647         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:57,330   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:00:57,330                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:00:57,330                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:00:57,331                    from ./base/sbml/SBMLWriter.cpp:42:
2025-09-08T03:00:57,331   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:00:57,331      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:00:57,331         |                           ^~~~~~~~~~~~~~
2025-09-08T03:00:57,332   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:00:57,332                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:00:57,332                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:00:57,332                    from /usr/include/c++/14/ios:44,
2025-09-08T03:00:57,332                    from ./base/sbml/SBMLWriter.cpp:33:
2025-09-08T03:00:57,332   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:00:57,332     117 |     struct unary_function
2025-09-08T03:00:57,332         |            ^~~~~~~~~~~~~~
2025-09-08T03:00:57,563   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-08T03:00:57,563   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:00:57,563      85 |   if (&(name) == NULL)
2025-09-08T03:00:57,564         |               ^
2025-09-08T03:00:57,564   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2025-09-08T03:00:57,564      83 | SBMLWriter::setProgramName (const std::string& name)
2025-09-08T03:00:57,564         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:00:57,565   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-08T03:00:57,565   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2025-09-08T03:00:57,565     109 |   if (&(version) == NULL)
2025-09-08T03:00:57,565         |                  ^
2025-09-08T03:00:57,565   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2025-09-08T03:00:57,565     107 | SBMLWriter::setProgramVersion (const std::string& version)
2025-09-08T03:00:57,566         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:00:58,039   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-08T03:00:58,040   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:00:58,040      85 |   if (&(name) == NULL)
2025-09-08T03:00:58,040         |   ^~
2025-09-08T03:00:58,040   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-08T03:00:58,040   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:00:58,041     109 |   if (&(version) == NULL)
2025-09-08T03:00:58,041         |   ^~
2025-09-08T03:01:01,442   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:01,442     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2025-09-08T03:01:01,443         |                           ^~~~~~~~~~~~~~
2025-09-08T03:01:01,443   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:01:01,443                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:01:01,443                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:01:01,443                    from /usr/include/c++/14/iomanip:42,
2025-09-08T03:01:01,443                    from ./base/sbml/SBO.cpp:33:
2025-09-08T03:01:01,443   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:01,443     117 |     struct unary_function
2025-09-08T03:01:01,443         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:09,510   In file included from ./base//sbml/Parameter.h:182,
2025-09-08T03:01:09,511                    from ./base//sbml/KineticLaw.h:180,
2025-09-08T03:01:09,511                    from ./base/sbml/SBase.cpp:46:
2025-09-08T03:01:09,511   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:09,511      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:01:09,511         |                           ^~~~~~~~~~~~~~
2025-09-08T03:01:09,511   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:01:09,511                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:01:09,512                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:01:09,512                    from /usr/include/c++/14/ios:44,
2025-09-08T03:01:09,512                    from /usr/include/c++/14/istream:40,
2025-09-08T03:01:09,512                    from /usr/include/c++/14/sstream:40,
2025-09-08T03:01:09,512                    from ./base/sbml/SBase.cpp:33:
2025-09-08T03:01:09,512   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:09,512     117 |     struct unary_function
2025-09-08T03:01:09,512         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:09,993   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:09,993      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2025-09-08T03:01:09,993         |                                    ^~~~~~~~~~~~~~
2025-09-08T03:01:09,993   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:09,993     117 |     struct unary_function
2025-09-08T03:01:09,993         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:09,993   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:09,994      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2025-09-08T03:01:09,994         |                                   ^~~~~~~~~~~~~~
2025-09-08T03:01:09,994   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:09,994     117 |     struct unary_function
2025-09-08T03:01:09,994         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:10,010   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T03:01:10,010   ./base/sbml/SBase.cpp:380:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:01:10,011     380 |   if (&orig == NULL)
2025-09-08T03:01:10,011         |             ^
2025-09-08T03:01:10,011   ./base/sbml/SBase.cpp:378:27: note: ‘orig’ declared here
2025-09-08T03:01:10,011     378 | SBase::SBase(const SBase& orig)
2025-09-08T03:01:10,011         |              ~~~~~~~~~~~~~^~~~
2025-09-08T03:01:10,020   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T03:01:10,020   ./base/sbml/SBase.cpp:492:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:01:10,020     492 |   if (&rhs == NULL)
2025-09-08T03:01:10,020         |            ^
2025-09-08T03:01:10,021   ./base/sbml/SBase.cpp:490:38: note: ‘rhs’ declared here
2025-09-08T03:01:10,021     490 | SBase& SBase::operator=(const SBase& rhs)
2025-09-08T03:01:10,021         |                         ~~~~~~~~~~~~~^~~
2025-09-08T03:01:10,038   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T03:01:10,038   ./base/sbml/SBase.cpp:1161:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T03:01:10,039    1161 |   if (&(metaid) == NULL)
2025-09-08T03:01:10,039         |                 ^
2025-09-08T03:01:10,039   ./base/sbml/SBase.cpp:1159:38: note: ‘metaid’ declared here
2025-09-08T03:01:10,039    1159 | SBase::setMetaId (const std::string& metaid)
2025-09-08T03:01:10,039         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:01:10,045   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T03:01:10,045   ./base/sbml/SBase.cpp:1346:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2025-09-08T03:01:10,045    1346 |   if (&(annotation) == NULL)
2025-09-08T03:01:10,046         |                     ^
2025-09-08T03:01:10,046   ./base/sbml/SBase.cpp:1344:42: note: ‘annotation’ declared here
2025-09-08T03:01:10,046    1344 | SBase::setAnnotation (const std::string& annotation)
2025-09-08T03:01:10,046         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T03:01:10,060   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T03:01:10,061   ./base/sbml/SBase.cpp:1716:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2025-09-08T03:01:10,061    1716 |   if (&(notes) == NULL)
2025-09-08T03:01:10,061         |                ^
2025-09-08T03:01:10,061   ./base/sbml/SBase.cpp:1713:36: note: ‘notes’ declared here
2025-09-08T03:01:10,061    1713 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2025-09-08T03:01:10,061         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:01:10,092   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T03:01:10,092   ./base/sbml/SBase.cpp:2366:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2025-09-08T03:01:10,092    2366 |   if (&(sboid) == NULL)
2025-09-08T03:01:10,092         |                ^
2025-09-08T03:01:10,092   ./base/sbml/SBase.cpp:2364:39: note: ‘sboid’ declared here
2025-09-08T03:01:10,092    2364 | SBase::setSBOTerm (const std::string &sboid)
2025-09-08T03:01:10,092         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:01:10,139   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2025-09-08T03:01:10,139   ./base/sbml/SBase.cpp:3605:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2025-09-08T03:01:10,139    3605 |   if (&pkgName == NULL)
2025-09-08T03:01:10,139         |                ^
2025-09-08T03:01:10,139   ./base/sbml/SBase.cpp:3604:22: note: ‘pkgName’ declared here
2025-09-08T03:01:10,139    3604 |   const std::string& pkgName = getPackageName();
2025-09-08T03:01:10,139         |                      ^~~~~~~
2025-09-08T03:01:10,315   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T03:01:10,315   ./base/sbml/SBase.cpp:5922:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:01:10,316    5922 |   if (&node == NULL) return;
2025-09-08T03:01:10,316         |             ^
2025-09-08T03:01:10,316   ./base/sbml/SBase.cpp:5920:22: note: ‘node’ declared here
2025-09-08T03:01:10,316    5920 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2025-09-08T03:01:10,316         |             ~~~~~~~~~^~~~
2025-09-08T03:01:11,012   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T03:01:11,013   ./base/sbml/SBase.cpp:2366:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:11,013    2366 |   if (&(sboid) == NULL)
2025-09-08T03:01:11,013         |   ^~
2025-09-08T03:01:11,020   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T03:01:11,020   ./base/sbml/SBase.cpp:1346:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:11,020    1346 |   if (&(annotation) == NULL)
2025-09-08T03:01:11,020         |   ^~
2025-09-08T03:01:11,038   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T03:01:11,039   ./base/sbml/SBase.cpp:1161:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:11,039    1161 |   if (&(metaid) == NULL)
2025-09-08T03:01:11,039         |   ^~
2025-09-08T03:01:11,087   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T03:01:11,087   ./base/sbml/SBase.cpp:492:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:11,087     492 |   if (&rhs == NULL)
2025-09-08T03:01:11,087         |   ^~
2025-09-08T03:01:11,092   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T03:01:11,092   ./base/sbml/SBase.cpp:380:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:11,092     380 |   if (&orig == NULL)
2025-09-08T03:01:11,093         |   ^~
2025-09-08T03:01:11,103   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T03:01:11,104   ./base/sbml/SBase.cpp:1716:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:11,104    1716 |   if (&(notes) == NULL)
2025-09-08T03:01:11,104         |   ^~
2025-09-08T03:01:11,109   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T03:01:11,109   ./base/sbml/SBase.cpp:5922:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:11,109    5922 |   if (&node == NULL) return;
2025-09-08T03:01:11,109         |   ^~
2025-09-08T03:01:27,909   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:01:27,909                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:01:27,909                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:01:27,909                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2025-09-08T03:01:27,909   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:27,909      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:01:27,909         |                           ^~~~~~~~~~~~~~
2025-09-08T03:01:27,909   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:01:27,910                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:01:27,910                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:01:27,910                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T03:01:27,910                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2025-09-08T03:01:27,910   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:27,910     117 |     struct unary_function
2025-09-08T03:01:27,910         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:28,158   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T03:01:28,159   ./base/sbml/SimpleSpeciesReference.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:01:28,159      97 |   if (&orig == NULL)
2025-09-08T03:01:28,159         |             ^
2025-09-08T03:01:28,159   ./base/sbml/SimpleSpeciesReference.cpp:94:78: note: ‘orig’ declared here
2025-09-08T03:01:28,159      94 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2025-09-08T03:01:28,159         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:01:28,160   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T03:01:28,160   ./base/sbml/SimpleSpeciesReference.cpp:115:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:01:28,161     115 |   if (&rhs == NULL)
2025-09-08T03:01:28,161         |            ^
2025-09-08T03:01:28,161   ./base/sbml/SimpleSpeciesReference.cpp:113:89: note: ‘rhs’ declared here
2025-09-08T03:01:28,161     113 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2025-09-08T03:01:28,161         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:28,163   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T03:01:28,164   ./base/sbml/SimpleSpeciesReference.cpp:215:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:28,164     215 |   if (&(sid) == NULL)
2025-09-08T03:01:28,164         |              ^
2025-09-08T03:01:28,164   ./base/sbml/SimpleSpeciesReference.cpp:213:56: note: ‘sid’ declared here
2025-09-08T03:01:28,164     213 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2025-09-08T03:01:28,164         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:28,164   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T03:01:28,165   ./base/sbml/SimpleSpeciesReference.cpp:237:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:28,165     237 |   if (&(sid) == NULL)
2025-09-08T03:01:28,165         |              ^
2025-09-08T03:01:28,165   ./base/sbml/SimpleSpeciesReference.cpp:235:51: note: ‘sid’ declared here
2025-09-08T03:01:28,165     235 | SimpleSpeciesReference::setId (const std::string& sid)
2025-09-08T03:01:28,165         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:28,169   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T03:01:28,169   ./base/sbml/SimpleSpeciesReference.cpp:301:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:01:28,169     301 |   if (&(name) == NULL)
2025-09-08T03:01:28,169         |               ^
2025-09-08T03:01:28,169   ./base/sbml/SimpleSpeciesReference.cpp:299:53: note: ‘name’ declared here
2025-09-08T03:01:28,169     299 | SimpleSpeciesReference::setName (const std::string& name)
2025-09-08T03:01:28,170         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:01:28,621   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T03:01:28,621   ./base/sbml/SimpleSpeciesReference.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:28,621      97 |   if (&orig == NULL)
2025-09-08T03:01:28,622         |   ^~
2025-09-08T03:01:28,622   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T03:01:28,622   ./base/sbml/SimpleSpeciesReference.cpp:115:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:28,622     115 |   if (&rhs == NULL)
2025-09-08T03:01:28,622         |   ^~
2025-09-08T03:01:28,622   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T03:01:28,623   ./base/sbml/SimpleSpeciesReference.cpp:215:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:28,623     215 |   if (&(sid) == NULL)
2025-09-08T03:01:28,623         |   ^~
2025-09-08T03:01:28,623   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T03:01:28,623   ./base/sbml/SimpleSpeciesReference.cpp:237:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:28,623     237 |   if (&(sid) == NULL)
2025-09-08T03:01:28,623         |   ^~
2025-09-08T03:01:28,623   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T03:01:28,624   ./base/sbml/SimpleSpeciesReference.cpp:301:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:28,624     301 |   if (&(name) == NULL)
2025-09-08T03:01:28,624         |   ^~
2025-09-08T03:01:33,024   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:01:33,024                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:01:33,024                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:01:33,024                    from ./base/sbml/Species.cpp:42:
2025-09-08T03:01:33,024   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:33,024      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:01:33,025         |                           ^~~~~~~~~~~~~~
2025-09-08T03:01:33,025   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:01:33,025                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:01:33,025                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:01:33,025                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T03:01:33,025                    from ./base/sbml/Species.cpp:35:
2025-09-08T03:01:33,025   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:33,025     117 |     struct unary_function
2025-09-08T03:01:33,025         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:33,267   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T03:01:33,267   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:01:33,267     167 |   if (&orig == NULL)
2025-09-08T03:01:33,267         |             ^
2025-09-08T03:01:33,268   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2025-09-08T03:01:33,268     164 | Species::Species(const Species& orig) :
2025-09-08T03:01:33,268         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:01:33,270   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T03:01:33,270   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:01:33,270     204 |   if (&rhs == NULL)
2025-09-08T03:01:33,270         |            ^
2025-09-08T03:01:33,270   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2025-09-08T03:01:33,270     202 | Species& Species::operator=(const Species& rhs)
2025-09-08T03:01:33,271         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:33,277   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T03:01:33,277   ./base/sbml/Species.cpp:616:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:33,277     616 |   if (&(sid) == NULL)
2025-09-08T03:01:33,277         |              ^
2025-09-08T03:01:33,278   ./base/sbml/Species.cpp:605:36: note: ‘sid’ declared here
2025-09-08T03:01:33,278     605 | Species::setId (const std::string& sid)
2025-09-08T03:01:33,278         |                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:33,278   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T03:01:33,278   ./base/sbml/Species.cpp:641:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:01:33,278     641 |   if (&(name) == NULL)
2025-09-08T03:01:33,278         |               ^
2025-09-08T03:01:33,278   ./base/sbml/Species.cpp:636:38: note: ‘name’ declared here
2025-09-08T03:01:33,278     636 | Species::setName (const std::string& name)
2025-09-08T03:01:33,279         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:01:33,279   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T03:01:33,279   ./base/sbml/Species.cpp:671:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:33,279     671 |   if (&(sid) == NULL)
2025-09-08T03:01:33,279         |              ^
2025-09-08T03:01:33,279   ./base/sbml/Species.cpp:669:45: note: ‘sid’ declared here
2025-09-08T03:01:33,280     669 | Species::setSpeciesType (const std::string& sid)
2025-09-08T03:01:33,280         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:33,280   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T03:01:33,280   ./base/sbml/Species.cpp:698:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:33,280     698 |   if (&(sid) == NULL)
2025-09-08T03:01:33,281         |              ^
2025-09-08T03:01:33,281   ./base/sbml/Species.cpp:696:45: note: ‘sid’ declared here
2025-09-08T03:01:33,281     696 | Species::setCompartment (const std::string& sid)
2025-09-08T03:01:33,281         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:33,282   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T03:01:33,282   ./base/sbml/Species.cpp:757:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:33,282     757 |   if (&(sid) == NULL)
2025-09-08T03:01:33,282         |              ^
2025-09-08T03:01:33,282   ./base/sbml/Species.cpp:755:48: note: ‘sid’ declared here
2025-09-08T03:01:33,282     755 | Species::setSubstanceUnits (const std::string& sid)
2025-09-08T03:01:33,282         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:33,283   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T03:01:33,283   ./base/sbml/Species.cpp:779:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:33,283     779 |   if (&(sid) == NULL)
2025-09-08T03:01:33,283         |              ^
2025-09-08T03:01:33,283   ./base/sbml/Species.cpp:777:50: note: ‘sid’ declared here
2025-09-08T03:01:33,283     777 | Species::setSpatialSizeUnits (const std::string& sid)
2025-09-08T03:01:33,283         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:33,286   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T03:01:33,286   ./base/sbml/Species.cpp:890:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:33,286     890 |   if (&(sid) == NULL)
2025-09-08T03:01:33,286         |              ^
2025-09-08T03:01:33,286   ./base/sbml/Species.cpp:888:50: note: ‘sid’ declared here
2025-09-08T03:01:33,286     888 | Species::setConversionFactor (const std::string& sid)
2025-09-08T03:01:33,286         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:33,340   ./base/sbml/Species.cpp: At global scope:
2025-09-08T03:01:33,340   ./base/sbml/Species.cpp:1913:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:33,340    1913 | struct IdEqS : public unary_function<SBase*, bool>
2025-09-08T03:01:33,341         |                       ^~~~~~~~~~~~~~
2025-09-08T03:01:33,341   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:33,341     117 |     struct unary_function
2025-09-08T03:01:33,341         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:33,344   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T03:01:33,344   ./base/sbml/Species.cpp:1936:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:33,344    1936 |   if (&(sid) == NULL)
2025-09-08T03:01:33,344         |              ^
2025-09-08T03:01:33,344   ./base/sbml/Species.cpp:1932:40: note: ‘sid’ declared here
2025-09-08T03:01:33,344    1932 | ListOfSpecies::get (const std::string& sid) const
2025-09-08T03:01:33,344         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:33,347   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T03:01:33,347   ./base/sbml/Species.cpp:1963:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:33,347    1963 |   if (&(sid) != NULL)
2025-09-08T03:01:33,348         |              ^
2025-09-08T03:01:33,348   ./base/sbml/Species.cpp:1958:43: note: ‘sid’ declared here
2025-09-08T03:01:33,348    1958 | ListOfSpecies::remove (const std::string& sid)
2025-09-08T03:01:33,348         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:33,353   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2025-09-08T03:01:33,353   ./base/sbml/Species.cpp:2041:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:33,353    2041 |   catch (SBMLConstructorException)
2025-09-08T03:01:33,353         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:33,354   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T03:01:33,354   ./base/sbml/Species.cpp:2057:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:33,354    2057 |   catch (SBMLConstructorException)
2025-09-08T03:01:33,354         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:33,913   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T03:01:33,913   ./base/sbml/Species.cpp:1936:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,913    1936 |   if (&(sid) == NULL)
2025-09-08T03:01:33,913         |   ^~
2025-09-08T03:01:33,916   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T03:01:33,916   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,917     167 |   if (&orig == NULL)
2025-09-08T03:01:33,917         |   ^~
2025-09-08T03:01:33,917   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T03:01:33,917   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,917     204 |   if (&rhs == NULL)
2025-09-08T03:01:33,917         |   ^~
2025-09-08T03:01:33,920   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T03:01:33,920   ./base/sbml/Species.cpp:616:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,920     616 |   if (&(sid) == NULL)
2025-09-08T03:01:33,920         |   ^~
2025-09-08T03:01:33,920   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T03:01:33,921   ./base/sbml/Species.cpp:641:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,921     641 |   if (&(name) == NULL)
2025-09-08T03:01:33,921         |   ^~
2025-09-08T03:01:33,921   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T03:01:33,921   ./base/sbml/Species.cpp:671:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,921     671 |   if (&(sid) == NULL)
2025-09-08T03:01:33,921         |   ^~
2025-09-08T03:01:33,921   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T03:01:33,921   ./base/sbml/Species.cpp:698:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,921     698 |   if (&(sid) == NULL)
2025-09-08T03:01:33,921         |   ^~
2025-09-08T03:01:33,922   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T03:01:33,922   ./base/sbml/Species.cpp:757:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,922     757 |   if (&(sid) == NULL)
2025-09-08T03:01:33,922         |   ^~
2025-09-08T03:01:33,923   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T03:01:33,923   ./base/sbml/Species.cpp:779:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,923     779 |   if (&(sid) == NULL)
2025-09-08T03:01:33,923         |   ^~
2025-09-08T03:01:33,923   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T03:01:33,924   ./base/sbml/Species.cpp:890:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,924     890 |   if (&(sid) == NULL)
2025-09-08T03:01:33,924         |   ^~
2025-09-08T03:01:33,937   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T03:01:33,937   ./base/sbml/Species.cpp:1963:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:33,937    1963 |   if (&(sid) != NULL)
2025-09-08T03:01:33,937         |   ^~
2025-09-08T03:01:43,847   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:01:43,847                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:01:43,847                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:01:43,848                    from ./base/sbml/SpeciesReference.cpp:48:
2025-09-08T03:01:43,848   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:43,848      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:01:43,848         |                           ^~~~~~~~~~~~~~
2025-09-08T03:01:43,848   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:01:43,848                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:01:43,848                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:01:43,848                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T03:01:43,848                    from ./base/sbml/SpeciesReference.cpp:35:
2025-09-08T03:01:43,849   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:43,849     117 |     struct unary_function
2025-09-08T03:01:43,849         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:44,097   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T03:01:44,098   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:01:44,098     129 |   if (&orig == NULL)
2025-09-08T03:01:44,098         |             ^
2025-09-08T03:01:44,098   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2025-09-08T03:01:44,098     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2025-09-08T03:01:44,098         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:01:44,099   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T03:01:44,100   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:01:44,100     157 |   if (&rhs == NULL)
2025-09-08T03:01:44,100         |            ^
2025-09-08T03:01:44,100   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2025-09-08T03:01:44,100     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2025-09-08T03:01:44,100         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:44,135   ./base/sbml/SpeciesReference.cpp: At global scope:
2025-09-08T03:01:44,135   ./base/sbml/SpeciesReference.cpp:1209:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:44,135    1209 | struct IdEqSSR : public unary_function<SBase*, bool>
2025-09-08T03:01:44,135         |                         ^~~~~~~~~~~~~~
2025-09-08T03:01:44,136   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:44,136     117 |     struct unary_function
2025-09-08T03:01:44,136         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:44,139   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T03:01:44,140   ./base/sbml/SpeciesReference.cpp:1251:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:44,140    1251 |   if (&(sid) == NULL)
2025-09-08T03:01:44,140         |              ^
2025-09-08T03:01:44,140   ./base/sbml/SpeciesReference.cpp:1247:50: note: ‘sid’ declared here
2025-09-08T03:01:44,140    1247 | ListOfSpeciesReferences::get (const std::string& sid) const
2025-09-08T03:01:44,140         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:44,143   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T03:01:44,143   ./base/sbml/SpeciesReference.cpp:1279:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:44,143    1279 |   if (&(sid) != NULL)
2025-09-08T03:01:44,143         |              ^
2025-09-08T03:01:44,143   ./base/sbml/SpeciesReference.cpp:1274:53: note: ‘sid’ declared here
2025-09-08T03:01:44,144    1274 | ListOfSpeciesReferences::remove (const std::string& sid)
2025-09-08T03:01:44,144         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:44,155   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2025-09-08T03:01:44,155   ./base/sbml/SpeciesReference.cpp:1448:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:44,155    1448 |   catch (SBMLConstructorException)
2025-09-08T03:01:44,155         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:44,156   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T03:01:44,156   ./base/sbml/SpeciesReference.cpp:1464:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:44,156    1464 |   catch (SBMLConstructorException)
2025-09-08T03:01:44,156         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:44,156   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2025-09-08T03:01:44,157   ./base/sbml/SpeciesReference.cpp:1480:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:44,157    1480 |   catch (SBMLConstructorException)
2025-09-08T03:01:44,157         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:44,157   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2025-09-08T03:01:44,157   ./base/sbml/SpeciesReference.cpp:1496:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:44,158    1496 |   catch (SBMLConstructorException)
2025-09-08T03:01:44,158         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:44,675   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T03:01:44,676   ./base/sbml/SpeciesReference.cpp:1251:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:44,676    1251 |   if (&(sid) == NULL)
2025-09-08T03:01:44,676         |   ^~
2025-09-08T03:01:44,679   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T03:01:44,679   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:44,679     129 |   if (&orig == NULL)
2025-09-08T03:01:44,679         |   ^~
2025-09-08T03:01:44,680   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T03:01:44,680   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:44,680     157 |   if (&rhs == NULL)
2025-09-08T03:01:44,680         |   ^~
2025-09-08T03:01:44,692   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T03:01:44,693   ./base/sbml/SpeciesReference.cpp:1279:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:44,693    1279 |   if (&(sid) != NULL)
2025-09-08T03:01:44,693         |   ^~
2025-09-08T03:01:50,497   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:01:50,497                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:01:50,497                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:01:50,497                    from ./base/sbml/SpeciesType.cpp:41:
2025-09-08T03:01:50,497   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:50,498      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:01:50,498         |                           ^~~~~~~~~~~~~~
2025-09-08T03:01:50,498   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:01:50,498                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:01:50,499                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:01:50,499                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T03:01:50,499                    from ./base/sbml/SpeciesType.cpp:33:
2025-09-08T03:01:50,499   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:50,499     117 |     struct unary_function
2025-09-08T03:01:50,499         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:50,732   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T03:01:50,732   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:01:50,732      92 |   if (&orig == NULL)
2025-09-08T03:01:50,733         |             ^
2025-09-08T03:01:50,733   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2025-09-08T03:01:50,733      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2025-09-08T03:01:50,733         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:01:50,734   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T03:01:50,734   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:01:50,734     109 |   if (&rhs == NULL)
2025-09-08T03:01:50,735         |            ^
2025-09-08T03:01:50,735   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2025-09-08T03:01:50,735     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2025-09-08T03:01:50,735         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:50,738   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T03:01:50,738   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:50,738     206 |   if (&(sid) == NULL)
2025-09-08T03:01:50,738         |              ^
2025-09-08T03:01:50,739   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2025-09-08T03:01:50,739     195 | SpeciesType::setId (const std::string& sid)
2025-09-08T03:01:50,739         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:50,740   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T03:01:50,740   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:01:50,740     231 |   if (&(name) == NULL)
2025-09-08T03:01:50,740         |               ^
2025-09-08T03:01:50,740   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2025-09-08T03:01:50,741     226 | SpeciesType::setName (const std::string& name)
2025-09-08T03:01:50,741         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:01:50,751   ./base/sbml/SpeciesType.cpp: At global scope:
2025-09-08T03:01:50,752   ./base/sbml/SpeciesType.cpp:541:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:50,752     541 | struct IdEqST : public unary_function<SBase*, bool>
2025-09-08T03:01:50,752         |                        ^~~~~~~~~~~~~~
2025-09-08T03:01:50,752   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:50,752     117 |     struct unary_function
2025-09-08T03:01:50,752         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:50,756   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T03:01:50,756   ./base/sbml/SpeciesType.cpp:566:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:50,756     566 |   if (&(sid) == NULL)
2025-09-08T03:01:50,756         |              ^
2025-09-08T03:01:50,756   ./base/sbml/SpeciesType.cpp:562:45: note: ‘sid’ declared here
2025-09-08T03:01:50,757     562 | ListOfSpeciesTypes::get (const std::string& sid) const
2025-09-08T03:01:50,757         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:50,760   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T03:01:50,761   ./base/sbml/SpeciesType.cpp:594:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:01:50,761     594 |   if (&(sid) != NULL)
2025-09-08T03:01:50,761         |              ^
2025-09-08T03:01:50,761   ./base/sbml/SpeciesType.cpp:589:48: note: ‘sid’ declared here
2025-09-08T03:01:50,761     589 | ListOfSpeciesTypes::remove (const std::string& sid)
2025-09-08T03:01:50,761         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:50,766   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2025-09-08T03:01:50,767   ./base/sbml/SpeciesType.cpp:673:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:50,767     673 |   catch (SBMLConstructorException)
2025-09-08T03:01:50,767         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:50,768   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T03:01:50,768   ./base/sbml/SpeciesType.cpp:689:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:50,768     689 |   catch (SBMLConstructorException)
2025-09-08T03:01:50,768         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:51,259   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T03:01:51,259   ./base/sbml/SpeciesType.cpp:566:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:51,259     566 |   if (&(sid) == NULL)
2025-09-08T03:01:51,259         |   ^~
2025-09-08T03:01:51,262   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T03:01:51,263   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:51,263      92 |   if (&orig == NULL)
2025-09-08T03:01:51,263         |   ^~
2025-09-08T03:01:51,263   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T03:01:51,264   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:51,264     109 |   if (&rhs == NULL)
2025-09-08T03:01:51,264         |   ^~
2025-09-08T03:01:51,266   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T03:01:51,266   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:51,266     206 |   if (&(sid) == NULL)
2025-09-08T03:01:51,266         |   ^~
2025-09-08T03:01:51,267   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T03:01:51,267   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:51,267     231 |   if (&(name) == NULL)
2025-09-08T03:01:51,267         |   ^~
2025-09-08T03:01:51,275   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T03:01:51,275   ./base/sbml/SpeciesType.cpp:594:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:51,275     594 |   if (&(sid) != NULL)
2025-09-08T03:01:51,276         |   ^~
2025-09-08T03:01:57,356   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:01:57,356                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:01:57,356                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:01:57,356                    from ./base/sbml/StoichiometryMath.cpp:46:
2025-09-08T03:01:57,356   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:01:57,356      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:01:57,356         |                           ^~~~~~~~~~~~~~
2025-09-08T03:01:57,357   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:01:57,357                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:01:57,357                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:01:57,357                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T03:01:57,358                    from ./base/sbml/StoichiometryMath.cpp:33:
2025-09-08T03:01:57,358   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:01:57,358     117 |     struct unary_function
2025-09-08T03:01:57,358         |            ^~~~~~~~~~~~~~
2025-09-08T03:01:57,587   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T03:01:57,588   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:01:57,588      98 |   if (&orig == NULL)
2025-09-08T03:01:57,588         |             ^
2025-09-08T03:01:57,588   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2025-09-08T03:01:57,588      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2025-09-08T03:01:57,588         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:01:57,590   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T03:01:57,590   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:01:57,590     120 |   if (&rhs == NULL)
2025-09-08T03:01:57,590         |            ^
2025-09-08T03:01:57,590   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2025-09-08T03:01:57,591     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2025-09-08T03:01:57,591         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:01:57,608   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2025-09-08T03:01:57,608   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:57,608     627 |   catch (SBMLConstructorException)
2025-09-08T03:01:57,608         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:57,609   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T03:01:57,609   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:01:57,610     643 |   catch (SBMLConstructorException)
2025-09-08T03:01:57,610         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:01:58,047   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T03:01:58,048   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:58,048      98 |   if (&orig == NULL)
2025-09-08T03:01:58,048         |   ^~
2025-09-08T03:01:58,049   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T03:01:58,049   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:01:58,049     120 |   if (&rhs == NULL)
2025-09-08T03:01:58,049         |   ^~
2025-09-08T03:02:06,165   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:02:06,166                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:02:06,166                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:02:06,166                    from ./base/sbml/Trigger.cpp:46:
2025-09-08T03:02:06,166   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:02:06,166      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:02:06,166         |                           ^~~~~~~~~~~~~~
2025-09-08T03:02:06,167   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:02:06,167                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:02:06,167                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:02:06,167                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T03:02:06,167                    from ./base/sbml/Trigger.cpp:33:
2025-09-08T03:02:06,167   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:02:06,168     117 |     struct unary_function
2025-09-08T03:02:06,168         |            ^~~~~~~~~~~~~~
2025-09-08T03:02:06,397   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T03:02:06,398   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:02:06,398     106 |   if (&orig == NULL)
2025-09-08T03:02:06,398         |             ^
2025-09-08T03:02:06,398   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2025-09-08T03:02:06,398     102 | Trigger::Trigger (const Trigger& orig) :
2025-09-08T03:02:06,398         |                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:06,400   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T03:02:06,400   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:02:06,400     131 |   if (&rhs == NULL)
2025-09-08T03:02:06,400         |            ^
2025-09-08T03:02:06,401   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2025-09-08T03:02:06,401     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2025-09-08T03:02:06,401         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T03:02:06,419   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2025-09-08T03:02:06,419   ./base/sbml/Trigger.cpp:670:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:02:06,419     670 |   catch (SBMLConstructorException)
2025-09-08T03:02:06,420         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:06,421   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T03:02:06,421   ./base/sbml/Trigger.cpp:686:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:02:06,421     686 |   catch (SBMLConstructorException)
2025-09-08T03:02:06,421         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:06,870   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T03:02:06,870   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:06,870     106 |   if (&orig == NULL)
2025-09-08T03:02:06,870         |   ^~
2025-09-08T03:02:06,871   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T03:02:06,871   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:06,871     131 |   if (&rhs == NULL)
2025-09-08T03:02:06,871         |   ^~
2025-09-08T03:02:10,971   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:02:10,971                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:02:10,971                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:02:10,971                    from ./base/sbml/Unit.cpp:41:
2025-09-08T03:02:10,972   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:02:10,972      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:02:10,972         |                           ^~~~~~~~~~~~~~
2025-09-08T03:02:10,972   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:02:10,973                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:02:10,973                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:02:10,973                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T03:02:10,973                    from ./base/sbml/Unit.cpp:33:
2025-09-08T03:02:10,973   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:02:10,973     117 |     struct unary_function
2025-09-08T03:02:10,973         |            ^~~~~~~~~~~~~~
2025-09-08T03:02:11,211   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T03:02:11,211   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:02:11,211     150 |   if (&orig == NULL)
2025-09-08T03:02:11,211         |             ^
2025-09-08T03:02:11,211   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2025-09-08T03:02:11,211     147 | Unit::Unit(const Unit& orig) :
2025-09-08T03:02:11,211         |            ~~~~~~~~~~~~^~~~
2025-09-08T03:02:11,213   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T03:02:11,214   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:02:11,214     179 |   if (&rhs == NULL)
2025-09-08T03:02:11,214         |            ^
2025-09-08T03:02:11,214   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2025-09-08T03:02:11,214     177 | Unit& Unit::operator=(const Unit& rhs)
2025-09-08T03:02:11,214         |                       ~~~~~~~~~~~~^~~
2025-09-08T03:02:11,301   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2025-09-08T03:02:11,301   ./base/sbml/Unit.cpp:2197:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:02:11,301    2197 |   catch (SBMLConstructorException)
2025-09-08T03:02:11,301         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:11,302   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T03:02:11,302   ./base/sbml/Unit.cpp:2213:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:02:11,302    2213 |   catch (SBMLConstructorException)
2025-09-08T03:02:11,302         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:11,838   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T03:02:11,838   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:11,838     150 |   if (&orig == NULL)
2025-09-08T03:02:11,838         |   ^~
2025-09-08T03:02:11,839   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T03:02:11,839   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:11,839     179 |   if (&rhs == NULL)
2025-09-08T03:02:11,839         |   ^~
2025-09-08T03:02:18,686   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:02:18,686                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:02:18,686                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:02:18,686                    from ./base/sbml/UnitDefinition.cpp:44:
2025-09-08T03:02:18,686   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:02:18,686      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:02:18,686         |                           ^~~~~~~~~~~~~~
2025-09-08T03:02:18,687   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:02:18,687                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:02:18,687                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:02:18,687                    from ./base//sbml/xml/XMLNode.h:149,
2025-09-08T03:02:18,688                    from ./base/sbml/UnitDefinition.cpp:34:
2025-09-08T03:02:18,688   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:02:18,688     117 |     struct unary_function
2025-09-08T03:02:18,688         |            ^~~~~~~~~~~~~~
2025-09-08T03:02:18,922   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T03:02:18,922   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:02:18,922     104 |   if (&orig == NULL)
2025-09-08T03:02:18,922         |             ^
2025-09-08T03:02:18,922   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2025-09-08T03:02:18,922     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2025-09-08T03:02:18,922         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:18,924   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T03:02:18,924   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:02:18,924     123 |   if (&rhs == NULL)
2025-09-08T03:02:18,925         |            ^
2025-09-08T03:02:18,925   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2025-09-08T03:02:18,925     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2025-09-08T03:02:18,925         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:02:18,932   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T03:02:18,932   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:02:18,932     262 |   if (&(sid) == NULL)
2025-09-08T03:02:18,932         |              ^
2025-09-08T03:02:18,932   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2025-09-08T03:02:18,933     251 | UnitDefinition::setId (const std::string& sid)
2025-09-08T03:02:18,933         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:02:18,934   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T03:02:18,934   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:02:18,934     287 |   if (&(name) == NULL)
2025-09-08T03:02:18,934         |               ^
2025-09-08T03:02:18,934   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2025-09-08T03:02:18,934     282 | UnitDefinition::setName (const std::string& name)
2025-09-08T03:02:18,934         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:18,981   ./base/sbml/UnitDefinition.cpp: At global scope:
2025-09-08T03:02:18,981   ./base/sbml/UnitDefinition.cpp:1666:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:02:18,982    1666 | struct IdEqUD : public unary_function<SBase*, bool>
2025-09-08T03:02:18,982         |                        ^~~~~~~~~~~~~~
2025-09-08T03:02:18,982   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:02:18,982     117 |     struct unary_function
2025-09-08T03:02:18,982         |            ^~~~~~~~~~~~~~
2025-09-08T03:02:18,985   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T03:02:18,986   ./base/sbml/UnitDefinition.cpp:1691:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:02:18,986    1691 |   if (&(sid) == NULL)
2025-09-08T03:02:18,986         |              ^
2025-09-08T03:02:18,986   ./base/sbml/UnitDefinition.cpp:1687:48: note: ‘sid’ declared here
2025-09-08T03:02:18,986    1687 | ListOfUnitDefinitions::get (const std::string& sid) const
2025-09-08T03:02:18,986         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:02:18,991   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T03:02:18,991   ./base/sbml/UnitDefinition.cpp:1733:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:02:18,991    1733 |   if (&(sid) != NULL)
2025-09-08T03:02:18,991         |              ^
2025-09-08T03:02:18,991   ./base/sbml/UnitDefinition.cpp:1728:51: note: ‘sid’ declared here
2025-09-08T03:02:18,991    1728 | ListOfUnitDefinitions::remove (const std::string& sid)
2025-09-08T03:02:18,992         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:02:18,997   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2025-09-08T03:02:18,997   ./base/sbml/UnitDefinition.cpp:1811:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:02:18,997    1811 |   catch (SBMLConstructorException)
2025-09-08T03:02:18,997         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:18,998   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T03:02:18,998   ./base/sbml/UnitDefinition.cpp:1827:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T03:02:18,999    1827 |   catch (SBMLConstructorException)
2025-09-08T03:02:18,999         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:19,525   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T03:02:19,525   ./base/sbml/UnitDefinition.cpp:1691:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:19,525    1691 |   if (&(sid) == NULL)
2025-09-08T03:02:19,526         |   ^~
2025-09-08T03:02:19,529   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T03:02:19,529   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:19,529     123 |   if (&rhs == NULL)
2025-09-08T03:02:19,529         |   ^~
2025-09-08T03:02:19,532   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T03:02:19,532   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:19,532     262 |   if (&(sid) == NULL)
2025-09-08T03:02:19,532         |   ^~
2025-09-08T03:02:19,533   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T03:02:19,533   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:19,533     287 |   if (&(name) == NULL)
2025-09-08T03:02:19,533         |   ^~
2025-09-08T03:02:19,543   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T03:02:19,543   ./base/sbml/UnitDefinition.cpp:1733:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:19,543    1733 |   if (&(sid) != NULL)
2025-09-08T03:02:19,544         |   ^~
2025-09-08T03:02:19,548   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T03:02:19,548   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:19,549     104 |   if (&orig == NULL)
2025-09-08T03:02:19,549         |   ^~
2025-09-08T03:02:26,167   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T03:02:26,167   ./base/sbml/annotation/CVTerm.cpp:130:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:02:26,168     130 |   if (&orig == NULL)
2025-09-08T03:02:26,168         |             ^
2025-09-08T03:02:26,168   ./base/sbml/annotation/CVTerm.cpp:128:30: note: ‘orig’ declared here
2025-09-08T03:02:26,168     128 | CVTerm::CVTerm(const CVTerm& orig)
2025-09-08T03:02:26,168         |                ~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:26,170   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T03:02:26,170   ./base/sbml/annotation/CVTerm.cpp:150:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:02:26,170     150 |   if (&rhs == NULL)
2025-09-08T03:02:26,170         |            ^
2025-09-08T03:02:26,170   ./base/sbml/annotation/CVTerm.cpp:148:33: note: ‘rhs’ declared here
2025-09-08T03:02:26,170     148 | CVTerm::operator=(const CVTerm& rhs)
2025-09-08T03:02:26,171         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T03:02:26,174   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T03:02:26,175   ./base/sbml/annotation/CVTerm.cpp:256:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T03:02:26,175     256 |   if (&qualifier == NULL)
2025-09-08T03:02:26,175         |                  ^
2025-09-08T03:02:26,175   ./base/sbml/annotation/CVTerm.cpp:253:50: note: ‘qualifier’ declared here
2025-09-08T03:02:26,175     253 | CVTerm::setModelQualifierType(const std::string& qualifier)
2025-09-08T03:02:26,175         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:02:26,176   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T03:02:26,176   ./base/sbml/annotation/CVTerm.cpp:273:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T03:02:26,176     273 |   if (&qualifier == NULL)
2025-09-08T03:02:26,176         |                  ^
2025-09-08T03:02:26,177   ./base/sbml/annotation/CVTerm.cpp:270:55: note: ‘qualifier’ declared here
2025-09-08T03:02:26,177     270 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2025-09-08T03:02:26,177         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:02:26,178   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T03:02:26,179   ./base/sbml/annotation/CVTerm.cpp:355:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2025-09-08T03:02:26,179     355 |   if (&resource == NULL || resource.empty())
2025-09-08T03:02:26,179         |                 ^
2025-09-08T03:02:26,179   ./base/sbml/annotation/CVTerm.cpp:353:40: note: ‘resource’ declared here
2025-09-08T03:02:26,179     353 | CVTerm::addResource(const std::string& resource)
2025-09-08T03:02:26,179         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:02:26,528   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T03:02:26,528   ./base/sbml/annotation/CVTerm.cpp:256:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:26,528     256 |   if (&qualifier == NULL)
2025-09-08T03:02:26,528         |   ^~
2025-09-08T03:02:26,529   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T03:02:26,529   ./base/sbml/annotation/CVTerm.cpp:273:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:26,529     273 |   if (&qualifier == NULL)
2025-09-08T03:02:26,529         |   ^~
2025-09-08T03:02:26,532   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T03:02:26,532   ./base/sbml/annotation/CVTerm.cpp:130:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:26,532     130 |   if (&orig == NULL)
2025-09-08T03:02:26,533         |   ^~
2025-09-08T03:02:26,533   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T03:02:26,534   ./base/sbml/annotation/CVTerm.cpp:150:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:26,534     150 |   if (&rhs == NULL)
2025-09-08T03:02:26,534         |   ^~
2025-09-08T03:02:26,534   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T03:02:26,535   ./base/sbml/annotation/CVTerm.cpp:355:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:26,535     355 |   if (&resource == NULL || resource.empty())
2025-09-08T03:02:26,535         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:29,229   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T03:02:29,229   ./base/sbml/annotation/Date.cpp:75:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T03:02:29,229      75 |   if (&(date) == NULL)
2025-09-08T03:02:29,229         |               ^
2025-09-08T03:02:29,229   ./base/sbml/annotation/Date.cpp:72:32: note: ‘date’ declared here
2025-09-08T03:02:29,230      72 | Date::Date (const std::string& date) :
2025-09-08T03:02:29,230         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:29,231   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T03:02:29,231   ./base/sbml/annotation/Date.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:02:29,231      91 |   if (&orig == NULL)
2025-09-08T03:02:29,231         |             ^
2025-09-08T03:02:29,232   ./base/sbml/annotation/Date.cpp:89:24: note: ‘orig’ declared here
2025-09-08T03:02:29,232      89 | Date::Date(const Date& orig)
2025-09-08T03:02:29,232         |            ~~~~~~~~~~~~^~~~
2025-09-08T03:02:29,234   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T03:02:29,234   ./base/sbml/annotation/Date.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:02:29,234     119 |   if (&rhs == NULL)
2025-09-08T03:02:29,234         |            ^
2025-09-08T03:02:29,235   ./base/sbml/annotation/Date.cpp:117:35: note: ‘rhs’ declared here
2025-09-08T03:02:29,235     117 | Date& Date::operator=(const Date& rhs)
2025-09-08T03:02:29,235         |                       ~~~~~~~~~~~~^~~
2025-09-08T03:02:29,240   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T03:02:29,240   ./base/sbml/annotation/Date.cpp:389:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T03:02:29,240     389 |   if (&(date) == NULL)
2025-09-08T03:02:29,240         |               ^
2025-09-08T03:02:29,241   ./base/sbml/annotation/Date.cpp:383:43: note: ‘date’ declared here
2025-09-08T03:02:29,241     383 | Date::setDateAsString (const std::string& date)
2025-09-08T03:02:29,241         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:29,610   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T03:02:29,611   ./base/sbml/annotation/Date.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:29,611      91 |   if (&orig == NULL)
2025-09-08T03:02:29,611         |   ^~
2025-09-08T03:02:29,612   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T03:02:29,612   ./base/sbml/annotation/Date.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:29,612     119 |   if (&rhs == NULL)
2025-09-08T03:02:29,612         |   ^~
2025-09-08T03:02:29,614   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T03:02:29,614   ./base/sbml/annotation/Date.cpp:75:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:29,614      75 |   if (&(date) == NULL)
2025-09-08T03:02:29,614         |   ^~
2025-09-08T03:02:29,617   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T03:02:29,617   ./base/sbml/annotation/Date.cpp:389:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:29,617     389 |   if (&(date) == NULL)
2025-09-08T03:02:29,617         |   ^~
2025-09-08T03:02:29,798   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2025-09-08T03:02:29,798   ./base/sbml/annotation/Date.cpp:443:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T03:02:29,798     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T03:02:29,798         |                        ^~
2025-09-08T03:02:29,799   ./base/sbml/annotation/Date.cpp:443:20: note: directive argument in the range [10, 4294967295]
2025-09-08T03:02:29,799     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T03:02:29,799         |                    ^~~~~~~~
2025-09-08T03:02:29,799   ./base/sbml/annotation/Date.cpp:443:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2025-09-08T03:02:29,799     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T03:02:29,799         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:29,799   ./base/sbml/annotation/Date.cpp:449:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T03:02:29,800     449 |     sprintf(cdate, "%uT", mDay);
2025-09-08T03:02:29,800         |                       ^
2025-09-08T03:02:29,800   ./base/sbml/annotation/Date.cpp:449:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T03:02:29,800     449 |     sprintf(cdate, "%uT", mDay);
2025-09-08T03:02:29,800         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:29,800   ./base/sbml/annotation/Date.cpp:455:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T03:02:29,800     455 |     sprintf(cdate, "%u:", mHour);
2025-09-08T03:02:29,801         |                       ^
2025-09-08T03:02:29,801   ./base/sbml/annotation/Date.cpp:455:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T03:02:29,801     455 |     sprintf(cdate, "%u:", mHour);
2025-09-08T03:02:29,801         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:29,801   ./base/sbml/annotation/Date.cpp:461:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T03:02:29,801     461 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T03:02:29,801         |                       ^
2025-09-08T03:02:29,802   ./base/sbml/annotation/Date.cpp:461:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T03:02:29,802     461 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T03:02:29,802         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:29,802   ./base/sbml/annotation/Date.cpp:467:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T03:02:29,802     467 |     sprintf(cdate, "%u", mSecond);
2025-09-08T03:02:29,802         |                       ^
2025-09-08T03:02:29,803   ./base/sbml/annotation/Date.cpp:467:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T03:02:29,803     467 |     sprintf(cdate, "%u", mSecond);
2025-09-08T03:02:29,803         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:29,803   ./base/sbml/annotation/Date.cpp:486:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T03:02:29,803     486 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T03:02:29,803         |                         ^
2025-09-08T03:02:29,804   ./base/sbml/annotation/Date.cpp:486:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T03:02:29,804     486 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T03:02:29,804         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:29,804   ./base/sbml/annotation/Date.cpp:492:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T03:02:29,804     492 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T03:02:29,804         |                         ^
2025-09-08T03:02:29,804   ./base/sbml/annotation/Date.cpp:492:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T03:02:29,805     492 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T03:02:29,805         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:02:32,582   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T03:02:32,582   ./base/sbml/annotation/ModelCreator.cpp:132:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:02:32,582     132 |   if (&orig == NULL)
2025-09-08T03:02:32,583         |             ^
2025-09-08T03:02:32,583   ./base/sbml/annotation/ModelCreator.cpp:130:48: note: ‘orig’ declared here
2025-09-08T03:02:32,583     130 | ModelCreator::ModelCreator(const ModelCreator& orig)
2025-09-08T03:02:32,583         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:32,585   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T03:02:32,585   ./base/sbml/annotation/ModelCreator.cpp:159:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:02:32,585     159 |   if (&rhs == NULL)
2025-09-08T03:02:32,585         |            ^
2025-09-08T03:02:32,585   ./base/sbml/annotation/ModelCreator.cpp:157:59: note: ‘rhs’ declared here
2025-09-08T03:02:32,585     157 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2025-09-08T03:02:32,586         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:02:32,588   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T03:02:32,588   ./base/sbml/annotation/ModelCreator.cpp:233:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:02:32,588     233 |   if (&(name) == NULL)
2025-09-08T03:02:32,589         |               ^
2025-09-08T03:02:32,589   ./base/sbml/annotation/ModelCreator.cpp:231:48: note: ‘name’ declared here
2025-09-08T03:02:32,589     231 | ModelCreator::setFamilyName(const std::string& name)
2025-09-08T03:02:32,589         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:32,590   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T03:02:32,590   ./base/sbml/annotation/ModelCreator.cpp:252:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:02:32,590     252 |   if (&(name) == NULL)
2025-09-08T03:02:32,590         |               ^
2025-09-08T03:02:32,590   ./base/sbml/annotation/ModelCreator.cpp:250:47: note: ‘name’ declared here
2025-09-08T03:02:32,590     250 | ModelCreator::setGivenName(const std::string& name)
2025-09-08T03:02:32,591         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:32,591   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T03:02:32,591   ./base/sbml/annotation/ModelCreator.cpp:271:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2025-09-08T03:02:32,592     271 |   if (&(email) == NULL)
2025-09-08T03:02:32,592         |                ^
2025-09-08T03:02:32,592   ./base/sbml/annotation/ModelCreator.cpp:269:43: note: ‘email’ declared here
2025-09-08T03:02:32,592     269 | ModelCreator::setEmail(const std::string& email)
2025-09-08T03:02:32,592         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:02:32,593   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T03:02:32,593   ./base/sbml/annotation/ModelCreator.cpp:287:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2025-09-08T03:02:32,593     287 |   if (&(organization) == NULL)
2025-09-08T03:02:32,593         |                       ^
2025-09-08T03:02:32,593   ./base/sbml/annotation/ModelCreator.cpp:285:50: note: ‘organization’ declared here
2025-09-08T03:02:32,594     285 | ModelCreator::setOrganization(const std::string& organization)
2025-09-08T03:02:32,594         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T03:02:32,945   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T03:02:32,946   ./base/sbml/annotation/ModelCreator.cpp:233:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:32,946     233 |   if (&(name) == NULL)
2025-09-08T03:02:32,946         |   ^~
2025-09-08T03:02:32,946   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T03:02:32,946   ./base/sbml/annotation/ModelCreator.cpp:252:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:32,946     252 |   if (&(name) == NULL)
2025-09-08T03:02:32,947         |   ^~
2025-09-08T03:02:32,947   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T03:02:32,947   ./base/sbml/annotation/ModelCreator.cpp:271:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:32,947     271 |   if (&(email) == NULL)
2025-09-08T03:02:32,947         |   ^~
2025-09-08T03:02:32,948   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T03:02:32,948   ./base/sbml/annotation/ModelCreator.cpp:287:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:32,948     287 |   if (&(organization) == NULL)
2025-09-08T03:02:32,948         |   ^~
2025-09-08T03:02:32,954   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T03:02:32,955   ./base/sbml/annotation/ModelCreator.cpp:132:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:32,955     132 |   if (&orig == NULL)
2025-09-08T03:02:32,955         |   ^~
2025-09-08T03:02:32,956   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T03:02:32,956   ./base/sbml/annotation/ModelCreator.cpp:159:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:32,956     159 |   if (&rhs == NULL)
2025-09-08T03:02:32,956         |   ^~
2025-09-08T03:02:36,020   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T03:02:36,021   ./base/sbml/annotation/ModelHistory.cpp:87:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:02:36,021      87 |   if (&orig == NULL)
2025-09-08T03:02:36,021         |             ^
2025-09-08T03:02:36,021   ./base/sbml/annotation/ModelHistory.cpp:85:48: note: ‘orig’ declared here
2025-09-08T03:02:36,021      85 | ModelHistory::ModelHistory(const ModelHistory& orig)
2025-09-08T03:02:36,021         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:02:36,024   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T03:02:36,024   ./base/sbml/annotation/ModelHistory.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:02:36,024     123 |   if (&rhs == NULL)
2025-09-08T03:02:36,024         |            ^
2025-09-08T03:02:36,024   ./base/sbml/annotation/ModelHistory.cpp:121:45: note: ‘rhs’ declared here
2025-09-08T03:02:36,024     121 | ModelHistory::operator=(const ModelHistory& rhs)
2025-09-08T03:02:36,025         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:02:36,373   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T03:02:36,373   ./base/sbml/annotation/ModelHistory.cpp:87:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:36,373      87 |   if (&orig == NULL)
2025-09-08T03:02:36,373         |   ^~
2025-09-08T03:02:36,375   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T03:02:36,375   ./base/sbml/annotation/ModelHistory.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:36,375     123 |   if (&rhs == NULL)
2025-09-08T03:02:36,375         |   ^~
2025-09-08T03:02:39,505   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:02:39,505                    from ./base//sbml/Model.h:409,
2025-09-08T03:02:39,505                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2025-09-08T03:02:39,506   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:02:39,506      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:02:39,506         |                           ^~~~~~~~~~~~~~
2025-09-08T03:02:39,507   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:02:39,507                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:02:39,507                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:02:39,507                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:29:
2025-09-08T03:02:39,507   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:02:39,507     117 |     struct unary_function
2025-09-08T03:02:39,507         |            ^~~~~~~~~~~~~~
2025-09-08T03:02:39,769   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T03:02:39,769   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:02:39,769      67 |   if (&element == NULL || stream == NULL) return;
2025-09-08T03:02:39,769         |                ^
2025-09-08T03:02:39,769   ./base/sbml/annotation/RDFAnnotationParser.cpp:64:51: note: ‘element’ declared here
2025-09-08T03:02:39,769      64 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T03:02:39,770         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:02:40,287   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:02:40,287      67 |   if (&element == NULL || stream == NULL) return;
2025-09-08T03:02:40,287         |                ^
2025-09-08T03:03:02,222   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T03:03:02,222   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:03:02,222     110 |   if (&orig == NULL)
2025-09-08T03:03:02,222         |             ^
2025-09-08T03:03:02,222   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2025-09-08T03:03:02,222     108 |   (const ConversionOption& orig)
2025-09-08T03:03:02,222         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:03:02,224   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T03:03:02,224   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:03:02,225     128 |   if (&rhs == NULL)
2025-09-08T03:03:02,225         |            ^
2025-09-08T03:03:02,225   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2025-09-08T03:03:02,225     126 | ConversionOption::operator=(const ConversionOption& rhs)
2025-09-08T03:03:02,225         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:03:02,618   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T03:03:02,619   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:02,619     110 |   if (&orig == NULL)
2025-09-08T03:03:02,619         |   ^~
2025-09-08T03:03:02,620   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T03:03:02,620   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:02,620     128 |   if (&rhs == NULL)
2025-09-08T03:03:02,620         |   ^~
2025-09-08T03:03:07,160   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T03:03:07,161   ./base/sbml/conversion/ConversionProperties.cpp:58:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:03:07,161      58 |   if (&orig == NULL)
2025-09-08T03:03:07,161         |             ^
2025-09-08T03:03:07,161   ./base/sbml/conversion/ConversionProperties.cpp:55:72: note: ‘orig’ declared here
2025-09-08T03:03:07,161      55 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2025-09-08T03:03:07,161         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:03:07,201   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T03:03:07,201   ./base/sbml/conversion/ConversionProperties.cpp:81:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:03:07,201      81 |   if (&rhs == NULL)
2025-09-08T03:03:07,201         |            ^
2025-09-08T03:03:07,201   ./base/sbml/conversion/ConversionProperties.cpp:79:61: note: ‘rhs’ declared here
2025-09-08T03:03:07,201      79 | ConversionProperties::operator=(const ConversionProperties& rhs)
2025-09-08T03:03:07,201         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:03:07,212   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T03:03:07,213   ./base/sbml/conversion/ConversionProperties.cpp:212:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2025-09-08T03:03:07,213     212 |   if (&option == NULL) return;
2025-09-08T03:03:07,213         |               ^
2025-09-08T03:03:07,213   ./base/sbml/conversion/ConversionProperties.cpp:210:57: note: ‘option’ declared here
2025-09-08T03:03:07,213     210 | ConversionProperties::addOption(const ConversionOption &option)
2025-09-08T03:03:07,213         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:03:07,712   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T03:03:07,712   ./base/sbml/conversion/ConversionProperties.cpp:58:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:07,712      58 |   if (&orig == NULL)
2025-09-08T03:03:07,712         |   ^~
2025-09-08T03:03:07,713   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T03:03:07,714   ./base/sbml/conversion/ConversionProperties.cpp:81:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:07,714      81 |   if (&rhs == NULL)
2025-09-08T03:03:07,714         |   ^~
2025-09-08T03:03:07,714   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T03:03:07,715   ./base/sbml/conversion/ConversionProperties.cpp:212:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:07,715     212 |   if (&option == NULL) return;
2025-09-08T03:03:07,715         |   ^~
2025-09-08T03:03:14,316   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:14,317                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:14,317                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:14,317                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:14,317                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:14,317                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:69,
2025-09-08T03:03:14,317                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2025-09-08T03:03:14,317   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:14,317      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:14,317         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:14,318   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:14,318                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:14,318                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:14,318                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:68:
2025-09-08T03:03:14,318   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:14,319     117 |     struct unary_function
2025-09-08T03:03:14,319         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:17,932   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:17,933                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:17,933                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:17,933                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:17,933                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:17,933                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2025-09-08T03:03:17,933   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:17,933      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:17,933         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:17,934   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:17,934                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:17,934                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:17,934                    from ./base//sbml/conversion/SBMLConverter.h:67:
2025-09-08T03:03:17,934   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:17,935     117 |     struct unary_function
2025-09-08T03:03:17,935         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:18,163   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T03:03:18,163   ./base/sbml/conversion/SBMLConverter.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:03:18,163      59 |   if (&orig == NULL)
2025-09-08T03:03:18,163         |             ^
2025-09-08T03:03:18,164   ./base/sbml/conversion/SBMLConverter.cpp:55:55: note: ‘orig’ declared here
2025-09-08T03:03:18,164      55 |     SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2025-09-08T03:03:18,164         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:03:18,166   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T03:03:18,166   ./base/sbml/conversion/SBMLConverter.cpp:94:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:03:18,166      94 |   if (&rhs == NULL)
2025-09-08T03:03:18,167         |            ^
2025-09-08T03:03:18,167   ./base/sbml/conversion/SBMLConverter.cpp:92:47: note: ‘rhs’ declared here
2025-09-08T03:03:18,167      92 | SBMLConverter::operator=(const SBMLConverter& rhs)
2025-09-08T03:03:18,167         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:03:18,582   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T03:03:18,582   ./base/sbml/conversion/SBMLConverter.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:18,583      59 |   if (&orig == NULL)
2025-09-08T03:03:18,583         |   ^~
2025-09-08T03:03:18,583   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T03:03:18,584   ./base/sbml/conversion/SBMLConverter.cpp:94:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:18,584      94 |   if (&rhs == NULL)
2025-09-08T03:03:18,584         |   ^~
2025-09-08T03:03:21,723   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:21,723                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:21,724                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:21,724                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:21,724                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:21,724                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2025-09-08T03:03:21,724                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2025-09-08T03:03:21,724   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:21,724      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:21,724         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:21,725   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T03:03:21,725                    from /usr/include/c++/14/vector:68,
2025-09-08T03:03:21,725                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2025-09-08T03:03:21,725   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:21,725     117 |     struct unary_function
2025-09-08T03:03:21,725         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:25,666   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:25,666                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:25,666                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:25,666                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:25,666                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:25,666                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:69,
2025-09-08T03:03:25,666                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2025-09-08T03:03:25,667   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:25,667      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:25,667         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:25,667   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:25,668                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:25,668                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:25,668                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:68:
2025-09-08T03:03:25,668   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:25,668     117 |     struct unary_function
2025-09-08T03:03:25,668         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:25,923   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:25,923   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:101:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:03:25,923     101 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T03:03:25,923         |              ^
2025-09-08T03:03:25,924   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:99:80: note: ‘props’ declared here
2025-09-08T03:03:25,924      99 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:03:25,924         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:03:25,930   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2025-09-08T03:03:25,930   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:205:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2025-09-08T03:03:25,930     205 |           ->isSetMath(), &idsToSkip)
2025-09-08T03:03:25,930         |                          ^~~~~~~~~~
2025-09-08T03:03:25,931   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:142:10: note: ‘idsToSkip’ declared here
2025-09-08T03:03:25,931     142 |   IdList idsToSkip;
2025-09-08T03:03:25,931         |          ^~~~~~~~~
2025-09-08T03:03:26,367   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:26,367   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:101:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:26,367     101 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T03:03:26,367         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:03:30,127   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:30,127                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:30,127                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:30,127                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:30,127                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:30,127                    from ./base//sbml/conversion/SBMLIdConverter.h:45,
2025-09-08T03:03:30,128                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2025-09-08T03:03:30,128   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:30,128      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:30,128         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:30,129   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:30,129                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:30,129                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:30,129                    from ./base//sbml/conversion/SBMLIdConverter.h:44:
2025-09-08T03:03:30,129   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:30,129     117 |     struct unary_function
2025-09-08T03:03:30,129         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:30,371   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:30,371   ./base/sbml/conversion/SBMLIdConverter.cpp:104:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:03:30,371     104 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T03:03:30,371         |              ^
2025-09-08T03:03:30,371   ./base/sbml/conversion/SBMLIdConverter.cpp:102:64: note: ‘props’ declared here
2025-09-08T03:03:30,371     102 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:03:30,371         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:03:30,939   ./base/sbml/conversion/SBMLIdConverter.cpp:104:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:30,939     104 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T03:03:30,940         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:03:35,559   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:35,559                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:35,559                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:35,559                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:35,559                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:35,559                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:51,
2025-09-08T03:03:35,559                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2025-09-08T03:03:35,559   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:35,559      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:35,560         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:35,560   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:35,560                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:35,561                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:35,561                    from ./base//sbml/conversion/SBMLConverter.h:67:
2025-09-08T03:03:35,561   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:35,561     117 |     struct unary_function
2025-09-08T03:03:35,561         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:35,799   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T03:03:35,799   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:03:35,799      91 |   if (&rhs == NULL)
2025-09-08T03:03:35,799         |            ^
2025-09-08T03:03:35,799   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2025-09-08T03:03:35,799      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2025-09-08T03:03:35,800         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:03:35,802   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:35,803   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:124:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:03:35,803     124 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T03:03:35,803         |              ^
2025-09-08T03:03:35,803   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:122:72: note: ‘props’ declared here
2025-09-08T03:03:35,803     122 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:03:35,803         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:03:36,236   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T03:03:36,236   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:36,236      91 |   if (&rhs == NULL)
2025-09-08T03:03:36,236         |   ^~
2025-09-08T03:03:36,237   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:36,237   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:124:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:36,237     124 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T03:03:36,237         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:03:39,849   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:39,849                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:39,849                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:39,849                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:39,849                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:39,849                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:87,
2025-09-08T03:03:39,849                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2025-09-08T03:03:39,849   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:39,850      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:39,850         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:39,850   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:39,851                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:39,851                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:39,851                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:86:
2025-09-08T03:03:39,851   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:39,851     117 |     struct unary_function
2025-09-08T03:03:39,851         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:40,091   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:40,091   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:98:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:03:40,091      98 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T03:03:40,091         |              ^
2025-09-08T03:03:40,091   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:96:79: note: ‘props’ declared here
2025-09-08T03:03:40,091      96 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:03:40,091         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:03:40,507   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:98:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:40,507      98 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T03:03:40,507         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:03:43,649   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:43,649                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:43,650                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:43,650                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:43,650                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:43,650                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:58,
2025-09-08T03:03:43,650                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2025-09-08T03:03:43,650   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:43,650      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:43,650         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:43,651   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:43,651                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:43,651                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:43,651                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:57:
2025-09-08T03:03:43,651   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:43,651     117 |     struct unary_function
2025-09-08T03:03:43,652         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:43,967   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T03:03:43,967   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:03:43,967      89 |   if (&rhs == NULL)
2025-09-08T03:03:43,967         |            ^
2025-09-08T03:03:43,967   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2025-09-08T03:03:43,967      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2025-09-08T03:03:43,967         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:03:43,971   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:43,971   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:125:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:03:43,971     125 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T03:03:43,971         |              ^
2025-09-08T03:03:43,972   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:123:74: note: ‘props’ declared here
2025-09-08T03:03:43,972     123 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:03:43,972         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:03:44,473   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T03:03:44,473   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:44,473      89 |   if (&rhs == NULL)
2025-09-08T03:03:44,473         |   ^~
2025-09-08T03:03:44,474   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:44,474   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:125:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:44,474     125 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T03:03:44,474         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:03:49,361   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:49,361                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:49,362                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:49,362                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:49,362                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:49,362                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:45,
2025-09-08T03:03:49,362                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2025-09-08T03:03:49,362   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:49,362      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:49,362         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:49,363   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:49,363                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:49,363                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:49,363                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:44:
2025-09-08T03:03:49,363   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:49,364     117 |     struct unary_function
2025-09-08T03:03:49,364         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:49,605   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:49,605   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:105:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:03:49,605     105 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T03:03:49,605         |              ^
2025-09-08T03:03:49,606   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:103:76: note: ‘props’ declared here
2025-09-08T03:03:49,606     103 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:03:49,606         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:03:50,064   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:105:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:50,064     105 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T03:03:50,064         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:03:53,658   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:53,658                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:53,658                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:53,659                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:53,659                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:53,659                    from ./base//sbml/conversion/SBMLReactionConverter.h:45,
2025-09-08T03:03:53,659                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2025-09-08T03:03:53,659   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:53,659      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:53,659         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:53,660   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:53,660                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:53,660                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:53,660                    from ./base//sbml/conversion/SBMLReactionConverter.h:44:
2025-09-08T03:03:53,660   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:53,660     117 |     struct unary_function
2025-09-08T03:03:53,660         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:53,923   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:53,923   ./base/sbml/conversion/SBMLReactionConverter.cpp:107:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:03:53,923     107 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T03:03:53,923         |              ^
2025-09-08T03:03:53,923   ./base/sbml/conversion/SBMLReactionConverter.cpp:105:70: note: ‘props’ declared here
2025-09-08T03:03:53,923     105 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:03:53,924         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:03:53,937   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual int SBMLReactionConverter::convert()’:
2025-09-08T03:03:53,938   ./base/sbml/conversion/SBMLReactionConverter.cpp:254:13: warning: variable ‘model’ set but not used [-Wunused-but-set-variable]
2025-09-08T03:03:53,938     254 |     Model * model = mDocument->getModel();
2025-09-08T03:03:53,938         |             ^~~~~
2025-09-08T03:03:54,437   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:54,437   ./base/sbml/conversion/SBMLReactionConverter.cpp:107:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:03:54,438     107 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T03:03:54,438         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:03:59,103   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:03:59,103                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:03:59,103                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:03:59,104                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:03:59,104                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:03:59,104                    from ./base//sbml/conversion/SBMLRuleConverter.h:96,
2025-09-08T03:03:59,104                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2025-09-08T03:03:59,104   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:03:59,104      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:03:59,104         |                           ^~~~~~~~~~~~~~
2025-09-08T03:03:59,105   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:03:59,106                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:03:59,106                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:03:59,106                    from ./base//sbml/conversion/SBMLRuleConverter.h:95:
2025-09-08T03:03:59,106   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:03:59,106     117 |     struct unary_function
2025-09-08T03:03:59,106         |            ^~~~~~~~~~~~~~
2025-09-08T03:03:59,348   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:03:59,348   ./base/sbml/conversion/SBMLRuleConverter.cpp:102:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:03:59,348     102 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T03:03:59,348         |              ^
2025-09-08T03:03:59,348   ./base/sbml/conversion/SBMLRuleConverter.cpp:100:68: note: ‘props’ declared here
2025-09-08T03:03:59,348     100 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:03:59,349         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:04:00,217   ./base/sbml/conversion/SBMLRuleConverter.cpp:102:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:00,217     102 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T03:04:00,217         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:04:08,029   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:08,030                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:08,030                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:08,030                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:04:08,030                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:04:08,030                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:54,
2025-09-08T03:04:08,030                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2025-09-08T03:04:08,030   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:08,030      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:08,030         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:08,031   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:08,031                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:04:08,031                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:04:08,032                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:53:
2025-09-08T03:04:08,032   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:08,032     117 |     struct unary_function
2025-09-08T03:04:08,032         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:08,297   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T03:04:08,297   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:04:08,297      86 |   if (&rhs == NULL)
2025-09-08T03:04:08,297         |            ^
2025-09-08T03:04:08,298   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2025-09-08T03:04:08,298      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2025-09-08T03:04:08,298         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:08,301   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:04:08,301   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:121:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:04:08,302     121 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T03:04:08,302         |              ^
2025-09-08T03:04:08,302   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:119:74: note: ‘props’ declared here
2025-09-08T03:04:08,302     119 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:04:08,302         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:04:08,712   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T03:04:08,712   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:08,712      86 |   if (&rhs == NULL)
2025-09-08T03:04:08,712         |   ^~
2025-09-08T03:04:08,713   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:04:08,713   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:121:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:08,713     121 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T03:04:08,713         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:04:12,025   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:12,025                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:12,025                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:12,025                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:04:12,025                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:04:12,025                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70,
2025-09-08T03:04:12,025                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2025-09-08T03:04:12,025   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:12,026      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:12,026         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:12,026   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:12,026                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:04:12,027                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:04:12,027                    from ./base//sbml/conversion/SBMLUnitsConverter.h:69:
2025-09-08T03:04:12,027   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:12,027     117 |     struct unary_function
2025-09-08T03:04:12,027         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:12,313   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T03:04:12,313   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:04:12,313      91 |   if (&rhs == NULL)
2025-09-08T03:04:12,313         |            ^
2025-09-08T03:04:12,313   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2025-09-08T03:04:12,313      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2025-09-08T03:04:12,314         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:12,317   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:04:12,317   ./base/sbml/conversion/SBMLUnitsConverter.cpp:126:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:04:12,317     126 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T03:04:12,317         |              ^
2025-09-08T03:04:12,318   ./base/sbml/conversion/SBMLUnitsConverter.cpp:124:67: note: ‘props’ declared here
2025-09-08T03:04:12,318     124 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:04:12,318         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:04:12,997   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T03:04:12,998   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:12,998      91 |   if (&rhs == NULL)
2025-09-08T03:04:12,998         |   ^~
2025-09-08T03:04:12,998   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:04:12,999   ./base/sbml/conversion/SBMLUnitsConverter.cpp:126:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:12,999     126 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T03:04:12,999         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:04:20,061   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:20,062                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:20,062                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:20,062                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T03:04:20,062                    from ./base/sbml/extension/ASTBasePlugin.cpp:40:
2025-09-08T03:04:20,062   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:20,062      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:20,062         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:20,063   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:20,063                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:04:20,063                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:04:20,063                    from ./base//sbml/extension/ASTBasePlugin.h:50:
2025-09-08T03:04:20,063   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:20,063     117 |     struct unary_function
2025-09-08T03:04:20,064         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:21,385   ./base/sbml/extension/ASTBasePlugin.cpp: In member function ‘unsigned int ASTBasePlugin::getPackageVersion() const’:
2025-09-08T03:04:21,385   ./base/sbml/extension/ASTBasePlugin.cpp:354:62: warning: ‘this’ pointer is null [-Wnonnull]
2025-09-08T03:04:21,385     354 |   return (mSBMLExt != NULL) ? 0 : mSBMLExt->getPackageVersion(getURI());
2025-09-08T03:04:21,385         |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T03:04:24,336   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:24,336                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:24,336                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:24,337                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:04:24,337                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:04:24,337                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T03:04:24,337                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2025-09-08T03:04:24,337   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:24,337      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:24,337         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:24,338   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:24,338                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:04:24,338                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:04:24,338                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:43,
2025-09-08T03:04:24,338                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2025-09-08T03:04:24,338   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:24,338     117 |     struct unary_function
2025-09-08T03:04:24,338         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:28,018   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:28,018                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:28,018                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:28,019                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T03:04:28,019                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2025-09-08T03:04:28,019   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:28,019      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:28,019         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:28,020   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:28,020                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:04:28,020                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:04:28,020                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2025-09-08T03:04:28,020   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:28,020     117 |     struct unary_function
2025-09-08T03:04:28,020         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:28,270   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T03:04:28,271   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T03:04:28,271     119 |   if (&attributes == NULL) return;
2025-09-08T03:04:28,271         |                   ^
2025-09-08T03:04:28,271   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2025-09-08T03:04:28,271     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2025-09-08T03:04:28,271         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T03:04:28,272   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T03:04:28,272   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T03:04:28,273     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:28,273         |                   ^
2025-09-08T03:04:28,273   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2025-09-08T03:04:28,273     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T03:04:28,273         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T03:04:28,273   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T03:04:28,274     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:28,274         |                                                  ^
2025-09-08T03:04:28,274   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2025-09-08T03:04:28,274     133 |                                     const ExpectedAttributes& expectedAttributes)
2025-09-08T03:04:28,274         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T03:04:28,277   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2025-09-08T03:04:28,277   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:04:28,277     169 |   if (&stream == NULL) return;
2025-09-08T03:04:28,277         |               ^
2025-09-08T03:04:28,277   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2025-09-08T03:04:28,277     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2025-09-08T03:04:28,278         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:04:28,708   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:28,708     169 |   if (&stream == NULL) return;
2025-09-08T03:04:28,708         |   ^~
2025-09-08T03:04:28,712   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T03:04:28,712   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:28,712     119 |   if (&attributes == NULL) return;
2025-09-08T03:04:28,712         |   ^~
2025-09-08T03:04:28,713   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T03:04:28,713   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:28,713     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:28,713         |                   ^
2025-09-08T03:04:28,714   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:28,714     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:28,714         |                                                  ^
2025-09-08T03:04:32,286   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:32,286                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:32,286                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:32,287                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T03:04:32,287                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:53,
2025-09-08T03:04:32,287                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2025-09-08T03:04:32,287   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:32,287      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:32,287         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:32,288   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:32,288                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:04:32,288                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:04:32,288                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2025-09-08T03:04:32,288   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:32,288     117 |     struct unary_function
2025-09-08T03:04:32,288         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:32,538   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T03:04:32,538   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T03:04:32,538      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:32,538         |                   ^
2025-09-08T03:04:32,538   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2025-09-08T03:04:32,539      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2025-09-08T03:04:32,539         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T03:04:32,539   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T03:04:32,539      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:32,539         |                                                  ^
2025-09-08T03:04:32,539   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2025-09-08T03:04:32,539      89 |                                           const ExpectedAttributes& expectedAttributes)
2025-09-08T03:04:32,540         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T03:04:32,950   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:32,950      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:32,950         |                   ^
2025-09-08T03:04:32,950   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:32,950      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:32,950         |                                                  ^
2025-09-08T03:04:35,957   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:35,958                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:35,958                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:35,958                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:04:35,958                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:04:35,958                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2025-09-08T03:04:35,958   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:35,958      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:35,958         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:35,959   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:35,959                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:04:35,959                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:04:35,959                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T03:04:35,959   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:35,960     117 |     struct unary_function
2025-09-08T03:04:35,960         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:36,251   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T03:04:36,251   ./base/sbml/extension/SBMLExtension.cpp:233:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T03:04:36,251     233 |   if (&extPoint == NULL) return NULL;
2025-09-08T03:04:36,251         |                 ^
2025-09-08T03:04:36,252   ./base/sbml/extension/SBMLExtension.cpp:231:65: note: ‘extPoint’ declared here
2025-09-08T03:04:36,252     231 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2025-09-08T03:04:36,252         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:04:36,256   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T03:04:36,256   ./base/sbml/extension/SBMLExtension.cpp:304:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:04:36,256     304 |   if(&uri == NULL) return false;
2025-09-08T03:04:36,256         |           ^
2025-09-08T03:04:36,256   ./base/sbml/extension/SBMLExtension.cpp:302:47: note: ‘uri’ declared here
2025-09-08T03:04:36,257     302 | SBMLExtension::isSupported(const std::string& uri) const
2025-09-08T03:04:36,257         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:36,776   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T03:04:36,777   ./base/sbml/extension/SBMLExtension.cpp:233:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:36,777     233 |   if (&extPoint == NULL) return NULL;
2025-09-08T03:04:36,777         |   ^~
2025-09-08T03:04:36,790   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T03:04:36,790   ./base/sbml/extension/SBMLExtension.cpp:304:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:36,790     304 |   if(&uri == NULL) return false;
2025-09-08T03:04:36,790         |   ^~
2025-09-08T03:04:43,406   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:43,406                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:43,406                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:43,406                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:04:43,406                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:04:43,406                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T03:04:43,406                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2025-09-08T03:04:43,407   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:43,407      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:43,407         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:43,408   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:43,408                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:04:43,408                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:04:43,408                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2025-09-08T03:04:43,408   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:43,408     117 |     struct unary_function
2025-09-08T03:04:43,408         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:47,072   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:47,072                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:47,072                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:47,073                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:04:47,073                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:04:47,073                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T03:04:47,073                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2025-09-08T03:04:47,073   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:47,073      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:47,073         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:47,073   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:47,074                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:04:47,074                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:04:47,074                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T03:04:47,074   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:47,074     117 |     struct unary_function
2025-09-08T03:04:47,074         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:47,389   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T03:04:47,389   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:04:47,389     103 |   if (&orig != NULL)
2025-09-08T03:04:47,390         |             ^
2025-09-08T03:04:47,390   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2025-09-08T03:04:47,390     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2025-09-08T03:04:47,390         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:04:47,474   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T03:04:47,474   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:04:47,474     221 |   if(&uri == NULL) return NULL;
2025-09-08T03:04:47,474         |           ^
2025-09-08T03:04:47,475   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2025-09-08T03:04:47,475     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2025-09-08T03:04:47,475         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:47,488   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T03:04:47,488   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T03:04:47,488     245 |   if (&extPoint != NULL)
2025-09-08T03:04:47,488         |                 ^
2025-09-08T03:04:47,489   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2025-09-08T03:04:47,489     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2025-09-08T03:04:47,489         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:04:47,493   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T03:04:47,493   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:04:47,493     272 |   if (&uri != NULL)
2025-09-08T03:04:47,493         |            ^
2025-09-08T03:04:47,493   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2025-09-08T03:04:47,493     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2025-09-08T03:04:47,493         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:47,495   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T03:04:47,496   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T03:04:47,496     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T03:04:47,496         |                ^
2025-09-08T03:04:47,496   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2025-09-08T03:04:47,496     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T03:04:47,496         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:04:47,497   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:04:47,497     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T03:04:47,497         |                                ^
2025-09-08T03:04:47,497   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2025-09-08T03:04:47,497     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T03:04:47,497         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:47,499   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T03:04:47,499   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T03:04:47,499     347 |   if (&extPoint == NULL) return 0;
2025-09-08T03:04:47,499         |                 ^
2025-09-08T03:04:47,500   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2025-09-08T03:04:47,500     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2025-09-08T03:04:47,500         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:04:47,502   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2025-09-08T03:04:47,502   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T03:04:47,502     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2025-09-08T03:04:47,502         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T03:04:47,502   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T03:04:48,235   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T03:04:48,235   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:48,235     272 |   if (&uri != NULL)
2025-09-08T03:04:48,235         |   ^~
2025-09-08T03:04:48,240   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T03:04:48,240   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:48,240     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T03:04:48,240         |                ^
2025-09-08T03:04:48,240   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:48,241     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T03:04:48,241         |                                ^
2025-09-08T03:04:48,242   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T03:04:48,242   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:48,242     245 |   if (&extPoint != NULL)
2025-09-08T03:04:48,242         |   ^~
2025-09-08T03:04:48,243   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T03:04:48,243   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:48,243     347 |   if (&extPoint == NULL) return 0;
2025-09-08T03:04:48,243         |   ^~
2025-09-08T03:04:48,251   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T03:04:48,251   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:48,251     221 |   if(&uri == NULL) return NULL;
2025-09-08T03:04:48,251         |   ^~
2025-09-08T03:04:48,256   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T03:04:48,256   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:48,256     103 |   if (&orig != NULL)
2025-09-08T03:04:48,256         |   ^~
2025-09-08T03:04:52,427   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T03:04:52,427   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T03:04:52,427      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T03:04:52,427         |            ^
2025-09-08T03:04:52,428   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:44: note: ‘lhs’ declared here
2025-09-08T03:04:52,428      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T03:04:52,428         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:52,428   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:04:52,428      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T03:04:52,428         |                            ^
2025-09-08T03:04:52,429   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:76: note: ‘rhs’ declared here
2025-09-08T03:04:52,429      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T03:04:52,429         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:52,430   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T03:04:52,430   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T03:04:52,430     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T03:04:52,430         |            ^
2025-09-08T03:04:52,431   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:43: note: ‘lhs’ declared here
2025-09-08T03:04:52,431     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T03:04:52,431         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:52,431   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:04:52,431     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T03:04:52,431         |                            ^
2025-09-08T03:04:52,432   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:75: note: ‘rhs’ declared here
2025-09-08T03:04:52,432     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T03:04:52,432         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:04:52,702   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T03:04:52,702   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:52,702      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T03:04:52,702         |            ^
2025-09-08T03:04:52,702   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:52,703      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T03:04:52,703         |                            ^
2025-09-08T03:04:52,704   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T03:04:52,704   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:52,704     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T03:04:52,705         |            ^
2025-09-08T03:04:52,705   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:52,705     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T03:04:52,705         |                            ^
2025-09-08T03:04:55,796   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:04:55,797                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:04:55,797                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:04:55,797                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T03:04:55,797                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2025-09-08T03:04:55,797   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:04:55,797      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:04:55,797         |                           ^~~~~~~~~~~~~~
2025-09-08T03:04:55,797   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:04:55,798                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:04:55,798                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:04:55,798                    from ./base//sbml/extension/SBasePlugin.h:252:
2025-09-08T03:04:55,798   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:04:55,798     117 |     struct unary_function
2025-09-08T03:04:55,798         |            ^~~~~~~~~~~~~~
2025-09-08T03:04:56,101   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T03:04:56,101   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T03:04:56,101     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:56,101         |                   ^
2025-09-08T03:04:56,102   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2025-09-08T03:04:56,102     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T03:04:56,102         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T03:04:56,102   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T03:04:56,102     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:56,102         |                                                  ^
2025-09-08T03:04:56,102   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2025-09-08T03:04:56,102     576 |                              const ExpectedAttributes& expectedAttributes)
2025-09-08T03:04:56,102         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T03:04:56,104   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T03:04:56,104   ./base/sbml/extension/SBasePlugin.cpp:683:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:04:56,104     683 |   if(&element == NULL) return;
2025-09-08T03:04:56,104         |               ^
2025-09-08T03:04:56,105   ./base/sbml/extension/SBasePlugin.cpp:678:51: note: ‘element’ declared here
2025-09-08T03:04:56,105     678 | SBasePlugin::logUnknownElement(const std::string &element,
2025-09-08T03:04:56,105         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:04:56,110   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T03:04:56,111   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T03:04:56,111     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:04:56,111         |                  ^
2025-09-08T03:04:56,111   ./base/sbml/extension/SBasePlugin.cpp:710:53: note: ‘attribute’ declared here
2025-09-08T03:04:56,111     710 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2025-09-08T03:04:56,111         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:04:56,111   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:04:56,111     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:04:56,112         |                                      ^
2025-09-08T03:04:56,112   ./base/sbml/extension/SBasePlugin.cpp:714:53: note: ‘element’ declared here
2025-09-08T03:04:56,112     714 |                                  const std::string& element)
2025-09-08T03:04:56,112         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:04:56,117   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T03:04:56,117   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T03:04:56,117     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:04:56,117         |                  ^
2025-09-08T03:04:56,117   ./base/sbml/extension/SBasePlugin.cpp:744:48: note: ‘attribute’ declared here
2025-09-08T03:04:56,118     744 | SBasePlugin::logEmptyString(const std::string &attribute,
2025-09-08T03:04:56,118         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:04:56,118   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:04:56,118     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:04:56,118         |                                      ^
2025-09-08T03:04:56,118   ./base/sbml/extension/SBasePlugin.cpp:748:56: note: ‘element’ declared here
2025-09-08T03:04:56,118     748 |                                     const std::string& element)
2025-09-08T03:04:56,118         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:04:56,581   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T03:04:56,582   ./base/sbml/extension/SBasePlugin.cpp:683:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:56,582     683 |   if(&element == NULL) return;
2025-09-08T03:04:56,582         |   ^~
2025-09-08T03:04:56,582   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T03:04:56,582   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:56,582     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:04:56,582         |                  ^
2025-09-08T03:04:56,582   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:56,583     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:04:56,583         |                                      ^
2025-09-08T03:04:56,583   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T03:04:56,583   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:56,583     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:04:56,583         |                  ^
2025-09-08T03:04:56,583   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:56,583     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:04:56,583         |                                      ^
2025-09-08T03:04:56,584   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T03:04:56,585   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:56,585     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:56,585         |                   ^
2025-09-08T03:04:56,585   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:04:56,585     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:04:56,585         |                                                  ^
2025-09-08T03:05:01,167   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:05:01,167                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:05:01,167                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:05:01,167                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:05:01,167                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2025-09-08T03:05:01,167   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:05:01,167      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:05:01,167         |                           ^~~~~~~~~~~~~~
2025-09-08T03:05:01,168   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:05:01,168                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:05:01,168                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:05:01,168                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T03:05:01,168   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:05:01,168     117 |     struct unary_function
2025-09-08T03:05:01,168         |            ^~~~~~~~~~~~~~
2025-09-08T03:05:01,402   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2025-09-08T03:05:01,403   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:05:01,403     148 |   if (&uri == NULL) return false;
2025-09-08T03:05:01,403         |            ^
2025-09-08T03:05:01,403   ./base/sbml/extension/SBasePluginCreatorBase.cpp:146:56: note: ‘uri’ declared here
2025-09-08T03:05:01,403     146 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2025-09-08T03:05:01,403         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:05:01,830   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:01,830     148 |   if (&uri == NULL) return false;
2025-09-08T03:05:01,830         |   ^~
2025-09-08T03:05:05,648   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:05:05,648                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:05:05,648                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:05:05,649                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:05:05,649                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:05:05,649                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2025-09-08T03:05:05,649                    from ./base/sbml/math/ASTBase.cpp:43:
2025-09-08T03:05:05,649   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:05:05,649      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:05:05,649         |                           ^~~~~~~~~~~~~~
2025-09-08T03:05:05,653   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:05:05,653                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:05:05,653                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:05:05,653                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T03:05:05,653                    from ./base/sbml/math/ASTBase.cpp:41:
2025-09-08T03:05:05,653   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:05:05,653     117 |     struct unary_function
2025-09-08T03:05:05,653         |            ^~~~~~~~~~~~~~
2025-09-08T03:05:05,943   ./base/sbml/math/ASTBase.cpp:67:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:05:05,943      67 | struct CloneASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2025-09-08T03:05:05,943         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:05:05,943   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:05:05,943     117 |     struct unary_function
2025-09-08T03:05:05,943         |            ^~~~~~~~~~~~~~
2025-09-08T03:05:05,943   ./base/sbml/math/ASTBase.cpp:75:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:05:05,944      75 | struct AssignASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2025-09-08T03:05:05,944         |                                       ^~~~~~~~~~~~~~
2025-09-08T03:05:05,944   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:05:05,944     117 |     struct unary_function
2025-09-08T03:05:05,944         |            ^~~~~~~~~~~~~~
2025-09-08T03:05:05,944   ./base/sbml/math/ASTBase.cpp:86:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:05:05,944      86 | struct CloneASTPluginEntityNoParent : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2025-09-08T03:05:05,944         |                                              ^~~~~~~~~~~~~~
2025-09-08T03:05:05,944   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:05:05,944     117 |     struct unary_function
2025-09-08T03:05:05,944         |            ^~~~~~~~~~~~~~
2025-09-08T03:05:06,003   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2025-09-08T03:05:06,003   ./base/sbml/math/ASTBase.cpp:1467:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:06,003    1467 |   if (&stream == NULL) return;
2025-09-08T03:05:06,003         |               ^
2025-09-08T03:05:06,003   ./base/sbml/math/ASTBase.cpp:1465:36: note: ‘stream’ declared here
2025-09-08T03:05:06,003    1465 |                 , XMLOutputStream& stream ) const
2025-09-08T03:05:06,003         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:06,004   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2025-09-08T03:05:06,004   ./base/sbml/math/ASTBase.cpp:1498:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2025-09-08T03:05:06,004    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T03:05:06,004         |                 ^
2025-09-08T03:05:06,004   ./base/sbml/math/ASTBase.cpp:1494:50: note: ‘mantissa’ declared here
2025-09-08T03:05:06,004    1494 | ASTBase::writeENotation (  const std::string&    mantissa
2025-09-08T03:05:06,004         |                            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:05:06,004   ./base/sbml/math/ASTBase.cpp:1498:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2025-09-08T03:05:06,004    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T03:05:06,005         |                                      ^
2025-09-08T03:05:06,005   ./base/sbml/math/ASTBase.cpp:1495:56: note: ‘exponent’ declared here
2025-09-08T03:05:06,005    1495 |                                , const std::string&    exponent
2025-09-08T03:05:06,005         |                                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:05:06,005   ./base/sbml/math/ASTBase.cpp:1498:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:06,005    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T03:05:06,005         |                                                         ^
2025-09-08T03:05:06,005   ./base/sbml/math/ASTBase.cpp:1496:36: note: ‘stream’ declared here
2025-09-08T03:05:06,005    1496 |                 , XMLOutputStream& stream ) const
2025-09-08T03:05:06,006         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:06,006   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2025-09-08T03:05:06,006   ./base/sbml/math/ASTBase.cpp:1511:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:06,006    1511 |   if (&stream == NULL) return;
2025-09-08T03:05:06,006         |               ^
2025-09-08T03:05:06,006   ./base/sbml/math/ASTBase.cpp:1509:44: note: ‘stream’ declared here
2025-09-08T03:05:06,006    1509 | ASTBase::writeNegInfinity(XMLOutputStream& stream) const
2025-09-08T03:05:06,006         |                           ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:06,013   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2025-09-08T03:05:06,013   ./base/sbml/math/ASTBase.cpp:1522:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:06,013    1522 |   if (&stream == NULL) return;
2025-09-08T03:05:06,013         |               ^
2025-09-08T03:05:06,013   ./base/sbml/math/ASTBase.cpp:1520:41: note: ‘stream’ declared here
2025-09-08T03:05:06,013    1520 | ASTBase::writeConstant(XMLOutputStream& stream, const std::string & name) const
2025-09-08T03:05:06,013         |                        ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:06,014   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2025-09-08T03:05:06,014   ./base/sbml/math/ASTBase.cpp:1532:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:06,014    1532 |   if (&stream == NULL) return;
2025-09-08T03:05:06,014         |               ^
2025-09-08T03:05:06,014   ./base/sbml/math/ASTBase.cpp:1530:49: note: ‘stream’ declared here
2025-09-08T03:05:06,014    1530 | ASTBase::writeStartEndElement (XMLOutputStream& stream) const
2025-09-08T03:05:06,014         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:06,033   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T03:05:06,033   ./base/sbml/math/ASTBase.cpp:1812:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:05:06,033    1812 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T03:05:06,033         |                ^
2025-09-08T03:05:06,033   ./base/sbml/math/ASTBase.cpp:1809:60: note: ‘element’ declared here
2025-09-08T03:05:06,033    1809 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T03:05:06,034         |                                            ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:05:06,034   ./base/sbml/math/ASTBase.cpp:1812:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:06,034    1812 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T03:05:06,034         |                                   ^
2025-09-08T03:05:06,034   ./base/sbml/math/ASTBase.cpp:1809:36: note: ‘stream’ declared here
2025-09-08T03:05:06,034    1809 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T03:05:06,034         |                    ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:06,583   ./base/sbml/math/ASTBase.cpp:1812:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:06,583    1812 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T03:05:06,583         |                                   ^
2025-09-08T03:05:06,583   ./base/sbml/math/ASTBase.cpp:1812:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:06,583    1812 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T03:05:06,583         |                ^
2025-09-08T03:05:06,600   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2025-09-08T03:05:06,600   ./base/sbml/math/ASTBase.cpp:1467:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:06,600    1467 |   if (&stream == NULL) return;
2025-09-08T03:05:06,601         |   ^~
2025-09-08T03:05:06,601   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2025-09-08T03:05:06,602   ./base/sbml/math/ASTBase.cpp:1498:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:06,602    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T03:05:06,602         |                 ^
2025-09-08T03:05:06,602   ./base/sbml/math/ASTBase.cpp:1498:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:06,602    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T03:05:06,602         |                                      ^
2025-09-08T03:05:06,602   ./base/sbml/math/ASTBase.cpp:1498:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:06,603    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T03:05:06,603         |                                              ^
2025-09-08T03:05:06,603   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2025-09-08T03:05:06,604   ./base/sbml/math/ASTBase.cpp:1511:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:06,604    1511 |   if (&stream == NULL) return;
2025-09-08T03:05:06,604         |   ^~
2025-09-08T03:05:06,606   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2025-09-08T03:05:06,606   ./base/sbml/math/ASTBase.cpp:1522:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:06,606    1522 |   if (&stream == NULL) return;
2025-09-08T03:05:06,607         |   ^~
2025-09-08T03:05:06,607   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2025-09-08T03:05:06,607   ./base/sbml/math/ASTBase.cpp:1532:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:06,607    1532 |   if (&stream == NULL) return;
2025-09-08T03:05:06,607         |   ^~
2025-09-08T03:05:13,315   ./base/sbml/math/ASTBinaryFunctionNode.cpp: In member function ‘virtual void ASTBinaryFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T03:05:13,315   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:13,315     326 |   if (&stream == NULL) return;
2025-09-08T03:05:13,315         |               ^
2025-09-08T03:05:13,315   ./base/sbml/math/ASTBinaryFunctionNode.cpp:324:47: note: ‘stream’ declared here
2025-09-08T03:05:13,316     324 | ASTBinaryFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T03:05:13,316         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:13,667   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:13,667     326 |   if (&stream == NULL) return;
2025-09-08T03:05:13,668         |   ^~
2025-09-08T03:05:17,035   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:05:17,035                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:05:17,036                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:05:17,036                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T03:05:17,036                    from ./base/sbml/math/ASTCSymbol.cpp:39:
2025-09-08T03:05:17,036   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:05:17,036      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:05:17,036         |                           ^~~~~~~~~~~~~~
2025-09-08T03:05:17,037   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:05:17,037                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:05:17,037                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:05:17,037                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T03:05:17,037                    from ./base//sbml/math/ASTCSymbol.h:42,
2025-09-08T03:05:17,037                    from ./base/sbml/math/ASTCSymbol.cpp:36:
2025-09-08T03:05:17,037   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:05:17,037     117 |     struct unary_function
2025-09-08T03:05:17,037         |            ^~~~~~~~~~~~~~
2025-09-08T03:05:21,568   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T03:05:21,568   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T03:05:21,568      54 |   if (&s == NULL) return s;
2025-09-08T03:05:21,568         |          ^
2025-09-08T03:05:21,569   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T03:05:21,569      52 | trim (const string& s)
2025-09-08T03:05:21,569         |       ~~~~~~~~~~~~~~^
2025-09-08T03:05:21,950   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:21,950      54 |   if (&s == NULL) return s;
2025-09-08T03:05:21,950         |   ^~
2025-09-08T03:05:24,951   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T03:05:24,951   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T03:05:24,951      54 |   if (&s == NULL) return s;
2025-09-08T03:05:24,951         |          ^
2025-09-08T03:05:24,951   ./base/sbml/math/ASTCSymbolDelayNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T03:05:24,952      52 | trim (const string& s)
2025-09-08T03:05:24,952         |       ~~~~~~~~~~~~~~^
2025-09-08T03:05:24,963   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2025-09-08T03:05:24,963   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:24,963     273 |   if (&stream == NULL) return;
2025-09-08T03:05:24,964         |               ^
2025-09-08T03:05:24,964   ./base/sbml/math/ASTCSymbolDelayNode.cpp:271:45: note: ‘stream’ declared here
2025-09-08T03:05:24,964     271 | ASTCSymbolDelayNode::write(XMLOutputStream& stream) const
2025-09-08T03:05:24,964         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:25,336   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T03:05:25,336   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:25,336      54 |   if (&s == NULL) return s;
2025-09-08T03:05:25,336         |   ^~
2025-09-08T03:05:25,339   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2025-09-08T03:05:25,339   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:25,340     273 |   if (&stream == NULL) return;
2025-09-08T03:05:25,340         |   ^~
2025-09-08T03:05:28,788   ./base/sbml/math/ASTCSymbolTimeNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T03:05:28,789   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T03:05:28,789      54 |   if (&s == NULL) return s;
2025-09-08T03:05:28,789         |          ^
2025-09-08T03:05:28,789   ./base/sbml/math/ASTCSymbolTimeNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T03:05:28,789      52 | trim (const string& s)
2025-09-08T03:05:28,789         |       ~~~~~~~~~~~~~~^
2025-09-08T03:05:29,167   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:29,167      54 |   if (&s == NULL) return s;
2025-09-08T03:05:29,168         |   ^~
2025-09-08T03:05:32,038   ./base/sbml/math/ASTCiFunctionNode.cpp: In member function ‘virtual void ASTCiFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T03:05:32,039   ./base/sbml/math/ASTCiFunctionNode.cpp:216:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:32,039     216 |   if (&stream == NULL) return;
2025-09-08T03:05:32,039         |               ^
2025-09-08T03:05:32,039   ./base/sbml/math/ASTCiFunctionNode.cpp:214:43: note: ‘stream’ declared here
2025-09-08T03:05:32,039     214 | ASTCiFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T03:05:32,039         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:32,391   ./base/sbml/math/ASTCiFunctionNode.cpp:216:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:32,391     216 |   if (&stream == NULL) return;
2025-09-08T03:05:32,391         |   ^~
2025-09-08T03:05:35,267   ./base/sbml/math/ASTCiNumberNode.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T03:05:35,267   ./base/sbml/math/ASTCiNumberNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T03:05:35,267      54 |   if (&s == NULL) return s;
2025-09-08T03:05:35,268         |          ^
2025-09-08T03:05:35,268   ./base/sbml/math/ASTCiNumberNode.cpp:52:21: note: ‘s’ declared here
2025-09-08T03:05:35,268      52 | trim (const string& s)
2025-09-08T03:05:35,268         |       ~~~~~~~~~~~~~~^
2025-09-08T03:05:35,647   ./base/sbml/math/ASTCiNumberNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:35,647      54 |   if (&s == NULL) return s;
2025-09-08T03:05:35,647         |   ^~
2025-09-08T03:05:38,595   ./base/sbml/math/ASTCnBase.cpp: In member function ‘int ASTCnBase::setUnits(const std::string&)’:
2025-09-08T03:05:38,596   ./base/sbml/math/ASTCnBase.cpp:116:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T03:05:38,596     116 |   if (&(units) == NULL)
2025-09-08T03:05:38,596         |                ^
2025-09-08T03:05:38,596   ./base/sbml/math/ASTCnBase.cpp:114:40: note: ‘units’ declared here
2025-09-08T03:05:38,596     114 | ASTCnBase::setUnits(const std::string& units)
2025-09-08T03:05:38,596         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:05:38,959   ./base/sbml/math/ASTCnBase.cpp:116:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:38,959     116 |   if (&(units) == NULL)
2025-09-08T03:05:38,959         |   ^~
2025-09-08T03:05:55,329   ./base/sbml/math/ASTConstantNumberNode.cpp: In member function ‘virtual void ASTConstantNumberNode::write(XMLOutputStream&) const’:
2025-09-08T03:05:55,329   ./base/sbml/math/ASTConstantNumberNode.cpp:179:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:05:55,329     179 |   if (&stream == NULL) return;
2025-09-08T03:05:55,329         |               ^
2025-09-08T03:05:55,330   ./base/sbml/math/ASTConstantNumberNode.cpp:177:47: note: ‘stream’ declared here
2025-09-08T03:05:55,330     177 | ASTConstantNumberNode::write(XMLOutputStream& stream) const
2025-09-08T03:05:55,330         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:05:55,668   ./base/sbml/math/ASTConstantNumberNode.cpp:179:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:55,668     179 |   if (&stream == NULL) return;
2025-09-08T03:05:55,668         |   ^~
2025-09-08T03:05:58,749   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:05:58,750                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:05:58,750                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:05:58,750                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T03:05:58,750                    from ./base/sbml/math/ASTFunction.cpp:38:
2025-09-08T03:05:58,750   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:05:58,750      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:05:58,750         |                           ^~~~~~~~~~~~~~
2025-09-08T03:05:58,751   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:05:58,751                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:05:58,751                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:05:58,751                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T03:05:58,751                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T03:05:58,751                    from ./base/sbml/math/ASTFunction.cpp:36:
2025-09-08T03:05:58,751   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:05:58,752     117 |     struct unary_function
2025-09-08T03:05:58,752         |            ^~~~~~~~~~~~~~
2025-09-08T03:05:58,988   ./base/sbml/math/ASTFunction.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T03:05:58,988   ./base/sbml/math/ASTFunction.cpp:148:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T03:05:58,988     148 |   if (&s == NULL) return s;
2025-09-08T03:05:58,988         |          ^
2025-09-08T03:05:58,988   ./base/sbml/math/ASTFunction.cpp:146:21: note: ‘s’ declared here
2025-09-08T03:05:58,988     146 | trim (const string& s)
2025-09-08T03:05:58,989         |       ~~~~~~~~~~~~~~^
2025-09-08T03:05:59,717   ./base/sbml/math/ASTFunction.cpp:148:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:05:59,717     148 |   if (&s == NULL) return s;
2025-09-08T03:05:59,717         |   ^~
2025-09-08T03:06:07,311   ./base/sbml/math/ASTFunctionBase.cpp: In member function ‘void ASTFunctionBase::writeArgumentsOfType(XMLOutputStream&, int) const’:
2025-09-08T03:06:07,311   ./base/sbml/math/ASTFunctionBase.cpp:349:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:06:07,312     349 |   if (&stream == NULL) return;
2025-09-08T03:06:07,312         |               ^
2025-09-08T03:06:07,312   ./base/sbml/math/ASTFunctionBase.cpp:347:56: note: ‘stream’ declared here
2025-09-08T03:06:07,312     347 | ASTFunctionBase::writeArgumentsOfType(XMLOutputStream& stream, int type) const
2025-09-08T03:06:07,312         |                                       ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:06:07,749   ./base/sbml/math/ASTFunctionBase.cpp:349:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:06:07,749     349 |   if (&stream == NULL) return;
2025-09-08T03:06:07,749         |   ^~
2025-09-08T03:06:10,976   ./base/sbml/math/ASTLambdaFunctionNode.cpp: In member function ‘virtual void ASTLambdaFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T03:06:10,977   ./base/sbml/math/ASTLambdaFunctionNode.cpp:324:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:06:10,977     324 |   if (&stream == NULL) return;
2025-09-08T03:06:10,977         |               ^
2025-09-08T03:06:10,977   ./base/sbml/math/ASTLambdaFunctionNode.cpp:322:47: note: ‘stream’ declared here
2025-09-08T03:06:10,977     322 | ASTLambdaFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T03:06:10,977         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:06:11,353   ./base/sbml/math/ASTLambdaFunctionNode.cpp:324:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:06:11,353     324 |   if (&stream == NULL) return;
2025-09-08T03:06:11,353         |   ^~
2025-09-08T03:06:13,991   ./base/sbml/math/ASTNaryFunctionNode.cpp: In member function ‘virtual void ASTNaryFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T03:06:13,992   ./base/sbml/math/ASTNaryFunctionNode.cpp:373:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:06:13,992     373 |   if (&stream == NULL) return;
2025-09-08T03:06:13,992         |               ^
2025-09-08T03:06:13,992   ./base/sbml/math/ASTNaryFunctionNode.cpp:371:45: note: ‘stream’ declared here
2025-09-08T03:06:13,992     371 | ASTNaryFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T03:06:13,992         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:06:14,360   ./base/sbml/math/ASTNaryFunctionNode.cpp:373:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:06:14,360     373 |   if (&stream == NULL) return;
2025-09-08T03:06:14,360         |   ^~
2025-09-08T03:06:17,981   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:06:17,981                    from ./base//sbml/Model.h:409,
2025-09-08T03:06:17,981                    from ./base/sbml/math/ASTNode.cpp:41:
2025-09-08T03:06:17,981   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:06:17,982      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:06:17,982         |                           ^~~~~~~~~~~~~~
2025-09-08T03:06:17,982   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:06:17,983                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:06:17,983                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:06:17,983                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T03:06:17,983                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T03:06:17,983                    from ./base//sbml/math/ASTNode.h:147,
2025-09-08T03:06:17,983                    from ./base/sbml/math/ASTNode.cpp:34:
2025-09-08T03:06:17,983   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:06:17,983     117 |     struct unary_function
2025-09-08T03:06:17,983         |            ^~~~~~~~~~~~~~
2025-09-08T03:06:18,265   ./base/sbml/math/ASTNode.cpp:141:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:06:18,265     141 | struct DeleteASTPluginEntity : public unary_function<ASTBasePlugin*, void>
2025-09-08T03:06:18,265         |                                       ^~~~~~~~~~~~~~
2025-09-08T03:06:18,266   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:06:18,266     117 |     struct unary_function
2025-09-08T03:06:18,266         |            ^~~~~~~~~~~~~~
2025-09-08T03:06:18,391   ./base/sbml/math/ASTNode.cpp: In member function ‘unsigned int ASTNode::getNumVariablesWithUndeclaredUnits(Model*) const’:
2025-09-08T03:06:18,391   ./base/sbml/math/ASTNode.cpp:3136:10: warning: variable ‘allowSpeciesRef’ set but not used [-Wunused-but-set-variable]
2025-09-08T03:06:18,391    3136 |     bool allowSpeciesRef = false;
2025-09-08T03:06:18,392         |          ^~~~~~~~~~~~~~~
2025-09-08T03:06:27,905   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:06:27,905                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:06:27,905                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:06:27,905                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T03:06:27,905                    from ./base/sbml/math/ASTNumber.cpp:38:
2025-09-08T03:06:27,905   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:06:27,906      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:06:27,906         |                           ^~~~~~~~~~~~~~
2025-09-08T03:06:27,906   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:06:27,906                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:06:27,906                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:06:27,906                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T03:06:27,906                    from ./base//sbml/math/ASTNumber.h:42,
2025-09-08T03:06:27,906                    from ./base/sbml/math/ASTNumber.cpp:36:
2025-09-08T03:06:27,906   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:06:27,907     117 |     struct unary_function
2025-09-08T03:06:27,907         |            ^~~~~~~~~~~~~~
2025-09-08T03:06:33,918   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp: In member function ‘virtual void ASTPiecewiseFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T03:06:33,918   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:06:33,918     714 |   if (&stream == NULL) return;
2025-09-08T03:06:33,918         |               ^
2025-09-08T03:06:33,918   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:712:50: note: ‘stream’ declared here
2025-09-08T03:06:33,918     712 | ASTPiecewiseFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T03:06:33,918         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:06:34,309   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:06:34,309     714 |   if (&stream == NULL) return;
2025-09-08T03:06:34,309         |   ^~
2025-09-08T03:06:37,325   ./base/sbml/math/ASTQualifierNode.cpp: In member function ‘virtual void ASTQualifierNode::write(XMLOutputStream&) const’:
2025-09-08T03:06:37,325   ./base/sbml/math/ASTQualifierNode.cpp:157:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:06:37,325     157 |   if (&stream == NULL) return;
2025-09-08T03:06:37,325         |               ^
2025-09-08T03:06:37,326   ./base/sbml/math/ASTQualifierNode.cpp:155:42: note: ‘stream’ declared here
2025-09-08T03:06:37,326     155 | ASTQualifierNode::write(XMLOutputStream& stream) const
2025-09-08T03:06:37,326         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:06:37,667   ./base/sbml/math/ASTQualifierNode.cpp:157:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:06:37,667     157 |   if (&stream == NULL) return;
2025-09-08T03:06:37,667         |   ^~
2025-09-08T03:06:40,316   ./base/sbml/math/ASTSemanticsNode.cpp: In member function ‘virtual void ASTSemanticsNode::write(XMLOutputStream&) const’:
2025-09-08T03:06:40,317   ./base/sbml/math/ASTSemanticsNode.cpp:255:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:06:40,317     255 |   if (&stream == NULL) return;
2025-09-08T03:06:40,317         |               ^
2025-09-08T03:06:40,317   ./base/sbml/math/ASTSemanticsNode.cpp:253:42: note: ‘stream’ declared here
2025-09-08T03:06:40,317     253 | ASTSemanticsNode::write(XMLOutputStream& stream) const
2025-09-08T03:06:40,317         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:06:40,684   ./base/sbml/math/ASTSemanticsNode.cpp:255:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:06:40,684     255 |   if (&stream == NULL) return;
2025-09-08T03:06:40,684         |   ^~
2025-09-08T03:06:44,245   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:06:44,245                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:06:44,245                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:06:44,245                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2025-09-08T03:06:44,245                    from ./base/sbml/math/ASTTypes.cpp:38:
2025-09-08T03:06:44,245   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:06:44,245      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:06:44,246         |                           ^~~~~~~~~~~~~~
2025-09-08T03:06:44,246   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:06:44,246                    from ./base//sbml/math/ASTTypes.h:183,
2025-09-08T03:06:44,246                    from ./base/sbml/math/ASTTypes.cpp:36:
2025-09-08T03:06:44,246   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:06:44,246     117 |     struct unary_function
2025-09-08T03:06:44,246         |            ^~~~~~~~~~~~~~
2025-09-08T03:06:44,482   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2025-09-08T03:06:44,483   ./base/sbml/math/ASTTypes.cpp:439:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:06:44,483     439 |   if (&name == NULL)
2025-09-08T03:06:44,483         |             ^
2025-09-08T03:06:44,483   ./base/sbml/math/ASTTypes.cpp:437:56: note: ‘name’ declared here
2025-09-08T03:06:44,483     437 | isCoreTopLevelMathMLFunctionNodeTag(const std::string& name)
2025-09-08T03:06:44,483         |                                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:06:44,486   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2025-09-08T03:06:44,486   ./base/sbml/math/ASTTypes.cpp:465:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:06:44,486     465 |   if (&name == NULL)
2025-09-08T03:06:44,486         |             ^
2025-09-08T03:06:44,487   ./base/sbml/math/ASTTypes.cpp:463:54: note: ‘name’ declared here
2025-09-08T03:06:44,487     463 | isCoreTopLevelMathMLNumberNodeTag(const std::string& name)
2025-09-08T03:06:44,487         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:06:44,893   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2025-09-08T03:06:44,893   ./base/sbml/math/ASTTypes.cpp:439:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:06:44,893     439 |   if (&name == NULL)
2025-09-08T03:06:44,894         |   ^~
2025-09-08T03:06:44,894   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2025-09-08T03:06:44,894   ./base/sbml/math/ASTTypes.cpp:465:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:06:44,894     465 |   if (&name == NULL)
2025-09-08T03:06:44,894         |   ^~
2025-09-08T03:06:47,292   ./base/sbml/math/ASTUnaryFunctionNode.cpp: In member function ‘virtual void ASTUnaryFunctionNode::write(XMLOutputStream&) const’:
2025-09-08T03:06:47,293   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:06:47,293     192 |   if (&stream == NULL) return;
2025-09-08T03:06:47,293         |               ^
2025-09-08T03:06:47,293   ./base/sbml/math/ASTUnaryFunctionNode.cpp:190:46: note: ‘stream’ declared here
2025-09-08T03:06:47,293     190 | ASTUnaryFunctionNode::write(XMLOutputStream& stream) const
2025-09-08T03:06:47,293         |                             ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:06:47,636   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:06:47,636     192 |   if (&stream == NULL) return;
2025-09-08T03:06:47,636         |   ^~
2025-09-08T03:06:53,259   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:06:53,259                    from ./base//sbml/Model.h:409,
2025-09-08T03:06:53,259                    from L3Parser.ypp:78:
2025-09-08T03:06:53,260   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:06:53,260      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:06:53,260         |                           ^~~~~~~~~~~~~~
2025-09-08T03:06:53,261   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:06:53,261                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:06:53,261                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:06:53,261                    from ./base//sbml/math/ASTBase.h:44,
2025-09-08T03:06:53,261                    from ./base//sbml/math/ASTFunction.h:42,
2025-09-08T03:06:53,261                    from ./base//sbml/math/ASTNode.h:147,
2025-09-08T03:06:53,261                    from ./base//sbml/math/L3Parser.h:37,
2025-09-08T03:06:53,261                    from L3Parser.ypp:77:
2025-09-08T03:06:53,261   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:06:53,261     117 |     struct unary_function
2025-09-08T03:06:53,262         |            ^~~~~~~~~~~~~~
2025-09-08T03:07:02,149   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2025-09-08T03:07:02,149   ./base/sbml/math/MathML.cpp:90:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:07:02,149      90 |   if (&stream == NULL) return NULL;
2025-09-08T03:07:02,149         |               ^
2025-09-08T03:07:02,149   ./base/sbml/math/MathML.cpp:88:29: note: ‘stream’ declared here
2025-09-08T03:07:02,150      88 | readMathML (XMLInputStream& stream, const std::string& reqd_prefix)
2025-09-08T03:07:02,150         |             ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:07:02,151   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T03:07:02,151   ./base/sbml/math/MathML.cpp:116:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:07:02,151     116 |   if (node == NULL || &stream == NULL) return;
2025-09-08T03:07:02,151         |                               ^
2025-09-08T03:07:02,152   ./base/sbml/math/MathML.cpp:114:52: note: ‘stream’ declared here
2025-09-08T03:07:02,152     114 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T03:07:02,152         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:07:02,514   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2025-09-08T03:07:02,514   ./base/sbml/math/MathML.cpp:90:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:02,514      90 |   if (&stream == NULL) return NULL;
2025-09-08T03:07:02,514         |   ^~
2025-09-08T03:07:02,515   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T03:07:02,515   ./base/sbml/math/MathML.cpp:116:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:02,515     116 |   if (node == NULL || &stream == NULL) return;
2025-09-08T03:07:02,515         |                               ^
2025-09-08T03:07:05,964   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:07:05,965                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:07:05,965                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:07:05,965                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:07:05,965                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:07:05,965                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2025-09-08T03:07:05,965                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2025-09-08T03:07:05,965   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:07:05,965      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:07:05,965         |                           ^~~~~~~~~~~~~~
2025-09-08T03:07:05,966   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:07:05,966                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:07:05,966                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:07:05,966                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T03:07:05,967   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:07:05,967     117 |     struct unary_function
2025-09-08T03:07:05,967         |            ^~~~~~~~~~~~~~
2025-09-08T03:07:11,167   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:07:11,167                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:07:11,167                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:07:11,167                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T03:07:11,167                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:63,
2025-09-08T03:07:11,168                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2025-09-08T03:07:11,168   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:07:11,168      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:07:11,168         |                           ^~~~~~~~~~~~~~
2025-09-08T03:07:11,169   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:07:11,169                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:07:11,170                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:07:11,170                    from /usr/include/c++/14/ios:44,
2025-09-08T03:07:11,170                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:07:11,170                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2025-09-08T03:07:11,170   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:07:11,170     117 |     struct unary_function
2025-09-08T03:07:11,170         |            ^~~~~~~~~~~~~~
2025-09-08T03:07:23,220   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:07:23,220                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:07:23,220                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:07:23,220                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T03:07:23,221                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:68,
2025-09-08T03:07:23,221                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2025-09-08T03:07:23,221   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:07:23,221      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:07:23,221         |                           ^~~~~~~~~~~~~~
2025-09-08T03:07:23,222   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:07:23,222                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:07:23,222                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:07:23,222                    from /usr/include/c++/14/ios:44,
2025-09-08T03:07:23,222                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:07:23,222                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2025-09-08T03:07:23,222   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:07:23,222     117 |     struct unary_function
2025-09-08T03:07:23,222         |            ^~~~~~~~~~~~~~
2025-09-08T03:07:30,762   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:07:30,762                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:07:30,763                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:07:30,763                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T03:07:30,763                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:65,
2025-09-08T03:07:30,763                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2025-09-08T03:07:30,763   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:07:30,763      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:07:30,763         |                           ^~~~~~~~~~~~~~
2025-09-08T03:07:30,764   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:07:30,764                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:07:30,764                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:07:30,764                    from /usr/include/c++/14/ios:44,
2025-09-08T03:07:30,764                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:07:30,764                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2025-09-08T03:07:30,764   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:07:30,765     117 |     struct unary_function
2025-09-08T03:07:30,765         |            ^~~~~~~~~~~~~~
2025-09-08T03:07:31,129   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2025-09-08T03:07:31,129   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T03:07:31,129     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T03:07:31,129         |                  ^
2025-09-08T03:07:31,129   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:450:50: note: ‘attribute’ declared here
2025-09-08T03:07:31,129     450 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2025-09-08T03:07:31,129         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:07:31,130   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T03:07:31,130     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T03:07:31,130         |                                             ^
2025-09-08T03:07:31,130   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:451:50: note: ‘wrongattribute’ declared here
2025-09-08T03:07:31,130     451 |                               const std::string& wrongattribute)
2025-09-08T03:07:31,130         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T03:07:31,606   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:31,606     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T03:07:31,606         |                  ^
2025-09-08T03:07:31,607   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:31,607     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T03:07:31,607         |                                             ^
2025-09-08T03:07:36,162   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:07:36,162                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:07:36,162                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:07:36,162                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:07:36,162                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:07:36,162                    from ./base//sbml/packages/comp/sbml/CompBase.h:43,
2025-09-08T03:07:36,162                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:28:
2025-09-08T03:07:36,163   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:07:36,163      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:07:36,163         |                           ^~~~~~~~~~~~~~
2025-09-08T03:07:36,163   In file included from /usr/include/c++/14/bits/stl_tree.h:65,
2025-09-08T03:07:36,163                    from /usr/include/c++/14/set:62,
2025-09-08T03:07:36,163                    from ./base//sbml/packages/comp/sbml/CompBase.h:40:
2025-09-08T03:07:36,163   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:07:36,164     117 |     struct unary_function
2025-09-08T03:07:36,164         |            ^~~~~~~~~~~~~~
2025-09-08T03:07:36,568   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T03:07:36,568   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T03:07:36,568     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:07:36,568         |                   ^
2025-09-08T03:07:36,568   ./base/sbml/packages/comp/sbml/CompBase.cpp:150:48: note: ‘attributes’ declared here
2025-09-08T03:07:36,568     150 | CompBase::readAttributes (const XMLAttributes& attributes,
2025-09-08T03:07:36,568         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T03:07:36,569   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T03:07:36,569     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:07:36,569         |                                                  ^
2025-09-08T03:07:36,569   ./base/sbml/packages/comp/sbml/CompBase.cpp:151:53: note: ‘expectedAttributes’ declared here
2025-09-08T03:07:36,569     151 |                           const ExpectedAttributes& expectedAttributes)
2025-09-08T03:07:36,569         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T03:07:36,572   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T03:07:36,572   ./base/sbml/packages/comp/sbml/CompBase.cpp:199:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:07:36,572     199 |   if(&element == NULL) return;
2025-09-08T03:07:36,572         |               ^
2025-09-08T03:07:36,573   ./base/sbml/packages/comp/sbml/CompBase.cpp:197:48: note: ‘element’ declared here
2025-09-08T03:07:36,573     197 | CompBase::logUnknownElement(const std::string &element)
2025-09-08T03:07:36,573         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:07:36,579   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T03:07:36,580   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T03:07:36,580     225 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:36,580         |                  ^
2025-09-08T03:07:36,580   ./base/sbml/packages/comp/sbml/CompBase.cpp:222:50: note: ‘attribute’ declared here
2025-09-08T03:07:36,580     222 | CompBase::logUnknownAttribute(const std::string &attribute,
2025-09-08T03:07:36,580         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:07:36,581   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:07:36,581     225 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:36,581         |                                      ^
2025-09-08T03:07:36,581   ./base/sbml/packages/comp/sbml/CompBase.cpp:223:50: note: ‘element’ declared here
2025-09-08T03:07:36,581     223 |                               const std::string& element)
2025-09-08T03:07:36,581         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:07:36,588   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T03:07:36,588   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T03:07:36,589     261 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:36,589         |                  ^
2025-09-08T03:07:36,589   ./base/sbml/packages/comp/sbml/CompBase.cpp:257:45: note: ‘attribute’ declared here
2025-09-08T03:07:36,589     257 | CompBase::logEmptyString(const std::string &attribute,
2025-09-08T03:07:36,589         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:07:36,589   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:07:36,590     261 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:36,590         |                                      ^
2025-09-08T03:07:36,590   ./base/sbml/packages/comp/sbml/CompBase.cpp:258:45: note: ‘element’ declared here
2025-09-08T03:07:36,590     258 |                          const std::string& element)
2025-09-08T03:07:36,590         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:07:36,595   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T03:07:36,595   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T03:07:36,595     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T03:07:36,595         |                  ^
2025-09-08T03:07:36,595   ./base/sbml/packages/comp/sbml/CompBase.cpp:280:43: note: ‘attribute’ declared here
2025-09-08T03:07:36,595     280 | CompBase::logInvalidId(const std::string& attribute,
2025-09-08T03:07:36,595         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:07:36,596   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T03:07:36,596     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T03:07:36,596         |                                             ^
2025-09-08T03:07:36,596   ./base/sbml/packages/comp/sbml/CompBase.cpp:281:43: note: ‘wrongattribute’ declared here
2025-09-08T03:07:36,596     281 |                        const std::string& wrongattribute,
2025-09-08T03:07:36,596         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T03:07:36,614   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T03:07:36,614   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T03:07:36,615     383 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:36,615         |                  ^
2025-09-08T03:07:36,615   ./base/sbml/packages/comp/sbml/CompBase.cpp:379:50: note: ‘attribute’ declared here
2025-09-08T03:07:36,615     379 | CompBase::logMissingAttribute(const std::string& attribute,
2025-09-08T03:07:36,615         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:07:36,615   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:07:36,616     383 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:36,616         |                                      ^
2025-09-08T03:07:36,616   ./base/sbml/packages/comp/sbml/CompBase.cpp:380:50: note: ‘element’ declared here
2025-09-08T03:07:36,616     380 |                               const std::string& element)
2025-09-08T03:07:36,616         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:07:37,186   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T03:07:37,186   ./base/sbml/packages/comp/sbml/CompBase.cpp:199:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,186     199 |   if(&element == NULL) return;
2025-09-08T03:07:37,187         |   ^~
2025-09-08T03:07:37,187   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T03:07:37,188   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,188     225 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:37,188         |                  ^
2025-09-08T03:07:37,188   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,188     225 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:37,188         |                                      ^
2025-09-08T03:07:37,189   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T03:07:37,189   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,189     261 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:37,189         |                  ^
2025-09-08T03:07:37,189   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,190     261 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:37,190         |                                      ^
2025-09-08T03:07:37,191   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T03:07:37,192   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,192     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T03:07:37,192         |                  ^
2025-09-08T03:07:37,192   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,192     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T03:07:37,192         |                                             ^
2025-09-08T03:07:37,194   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T03:07:37,194   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,194     383 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:37,194         |                  ^
2025-09-08T03:07:37,194   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,194     383 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T03:07:37,194         |                                      ^
2025-09-08T03:07:37,203   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T03:07:37,203   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,203     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:07:37,203         |                   ^
2025-09-08T03:07:37,204   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:37,204     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T03:07:37,204         |                                                  ^
2025-09-08T03:07:42,800   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:07:42,800                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:07:42,800                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:07:42,801                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:07:42,801                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:07:42,801                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:07:42,801                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2025-09-08T03:07:42,801   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:07:42,801      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:07:42,801         |                           ^~~~~~~~~~~~~~
2025-09-08T03:07:42,802   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:07:42,802                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:07:42,802                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:07:42,802                    from /usr/include/c++/14/ios:44,
2025-09-08T03:07:42,802                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:07:42,802                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:07:42,802                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2025-09-08T03:07:42,802   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:07:42,803     117 |     struct unary_function
2025-09-08T03:07:42,803         |            ^~~~~~~~~~~~~~
2025-09-08T03:07:48,320   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:07:48,321                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:07:48,321                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:07:48,321                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:07:48,321                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:07:48,321                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:07:48,321                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2025-09-08T03:07:48,321   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:07:48,321      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:07:48,321         |                           ^~~~~~~~~~~~~~
2025-09-08T03:07:48,322   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:07:48,322                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:07:48,322                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:07:48,322                    from /usr/include/c++/14/ios:44,
2025-09-08T03:07:48,323                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:07:48,323                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:07:48,323                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2025-09-08T03:07:48,323   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:07:48,323     117 |     struct unary_function
2025-09-08T03:07:48,323         |            ^~~~~~~~~~~~~~
2025-09-08T03:07:57,564   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:07:57,564                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:07:57,564                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:07:57,564                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:07:57,564                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:07:57,565                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:07:57,565                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2025-09-08T03:07:57,565   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:07:57,565      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:07:57,565         |                           ^~~~~~~~~~~~~~
2025-09-08T03:07:57,566   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:07:57,566                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:07:57,566                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:07:57,566                    from /usr/include/c++/14/ios:44,
2025-09-08T03:07:57,566                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:07:57,566                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:07:57,566                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2025-09-08T03:07:57,566   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:07:57,566     117 |     struct unary_function
2025-09-08T03:07:57,566         |            ^~~~~~~~~~~~~~
2025-09-08T03:07:57,903   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2025-09-08T03:07:57,903   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:07:57,904     118 |   if (&(sid) != NULL)
2025-09-08T03:07:57,904         |              ^
2025-09-08T03:07:57,904   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2025-09-08T03:07:57,904     113 | ListOfDeletions::remove (const std::string& sid)
2025-09-08T03:07:57,904         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:07:58,375   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:07:58,375     118 |   if (&(sid) != NULL)
2025-09-08T03:07:58,375         |   ^~
2025-09-08T03:08:02,164   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:02,164                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:02,164                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:02,164                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:02,164                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:02,164                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:02,165                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2025-09-08T03:08:02,165   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:02,165      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:02,165         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:02,166   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:02,166                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:02,166                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:02,166                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:02,166                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:02,166                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:02,166                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2025-09-08T03:08:02,166   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:02,166     117 |     struct unary_function
2025-09-08T03:08:02,166         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:07,057   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:07,057                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:07,057                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:07,057                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:07,057                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:07,057                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:07,057                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2025-09-08T03:08:07,057   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:07,057      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:07,058         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:07,058   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:07,058                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:07,058                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:07,059                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:07,059                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:07,059                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:07,059                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2025-09-08T03:08:07,059   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:07,059     117 |     struct unary_function
2025-09-08T03:08:07,059         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:11,909   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:11,909                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:11,910                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:11,910                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:11,910                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:11,910                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:11,910                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2025-09-08T03:08:11,910   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:11,910      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:11,910         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:11,911   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:11,911                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:11,911                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:11,911                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:11,911                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:11,911                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:11,912                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2025-09-08T03:08:11,912   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:11,912     117 |     struct unary_function
2025-09-08T03:08:11,912         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:12,249   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2025-09-08T03:08:12,249   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:08:12,250     113 |   if (&(sid) != NULL)
2025-09-08T03:08:12,250         |              ^
2025-09-08T03:08:12,250   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2025-09-08T03:08:12,250     108 | ListOfPorts::remove (const std::string& sid)
2025-09-08T03:08:12,250         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:08:12,715   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:08:12,715     113 |   if (&(sid) != NULL)
2025-09-08T03:08:12,715         |   ^~
2025-09-08T03:08:16,472   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:16,472                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:16,472                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:16,472                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:16,472                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:16,472                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:16,472                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2025-09-08T03:08:16,472   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:16,472      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:16,472         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:16,473   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:16,473                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:16,473                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:16,474                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:16,474                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:16,474                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:16,474                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2025-09-08T03:08:16,474   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:16,474     117 |     struct unary_function
2025-09-08T03:08:16,474         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:20,726   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:20,726                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:20,726                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:20,727                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:20,727                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:20,727                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:20,727                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2025-09-08T03:08:20,727   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:20,727      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:20,727         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:20,728   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:20,728                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:20,728                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:20,728                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:20,728                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:20,729                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:20,729                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2025-09-08T03:08:20,729   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:20,729     117 |     struct unary_function
2025-09-08T03:08:20,729         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:21,072   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2025-09-08T03:08:21,072   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T03:08:21,072     113 |   if (&(sid) != NULL)
2025-09-08T03:08:21,072         |              ^
2025-09-08T03:08:21,072   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2025-09-08T03:08:21,072     108 | ListOfSubmodels::remove (const std::string& sid)
2025-09-08T03:08:21,073         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:08:21,542   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:08:21,542     113 |   if (&(sid) != NULL)
2025-09-08T03:08:21,542         |   ^~
2025-09-08T03:08:25,350   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:25,351                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:25,351                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:25,351                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:25,351                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:25,351                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:25,351                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2025-09-08T03:08:25,351   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:25,351      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:25,351         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:25,352   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:25,352                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:25,352                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:25,353                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:25,353                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:25,353                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:25,353                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2025-09-08T03:08:25,353   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:25,353     117 |     struct unary_function
2025-09-08T03:08:25,353         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:29,730   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:29,731                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:29,731                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:29,731                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:29,731                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:29,731                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:29,731                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2025-09-08T03:08:29,731   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:29,731      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:29,731         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:29,732   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:29,732                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:29,732                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:29,732                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:29,732                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:29,733                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:29,733                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2025-09-08T03:08:29,733   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:29,733     117 |     struct unary_function
2025-09-08T03:08:29,733         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:35,198   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:56,
2025-09-08T03:08:35,198                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2025-09-08T03:08:35,198   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:35,198      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:35,198         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:35,199   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:35,199                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:35,199                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:35,199                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:35,200                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:35,200                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:35,200                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2025-09-08T03:08:35,200   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:35,200     117 |     struct unary_function
2025-09-08T03:08:35,200         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:40,005   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:40,005                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:40,005                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:40,005                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:40,005                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:40,005                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:40,005                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2025-09-08T03:08:40,005   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:40,006      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:40,006         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:40,006   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:40,007                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:40,007                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:40,007                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:40,007                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:40,007                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:40,007                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2025-09-08T03:08:40,007   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:40,007     117 |     struct unary_function
2025-09-08T03:08:40,007         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:46,897   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:46,897                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:46,897                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:46,897                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:46,897                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:46,897                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:46,898                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2025-09-08T03:08:46,898   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:46,898      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:46,898         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:46,899   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:46,899                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:46,899                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:46,899                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:46,899                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:46,899                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:46,899                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2025-09-08T03:08:46,899   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:46,899     117 |     struct unary_function
2025-09-08T03:08:46,899         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:53,957   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:08:53,957                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:08:53,957                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:08:53,957                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:08:53,957                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:08:53,958                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2025-09-08T03:08:53,958                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:36:
2025-09-08T03:08:53,958   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:08:53,958      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:08:53,958         |                           ^~~~~~~~~~~~~~
2025-09-08T03:08:53,959   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:08:53,959                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:08:53,959                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:08:53,959                    from /usr/include/c++/14/ios:44,
2025-09-08T03:08:53,959                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:08:53,959                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:08:53,959                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:27:
2025-09-08T03:08:53,959   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:08:53,959     117 |     struct unary_function
2025-09-08T03:08:53,960         |            ^~~~~~~~~~~~~~
2025-09-08T03:08:56,104   ./base/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual int SBaseRef::performDeletion()’:
2025-09-08T03:08:56,104   ./base/sbml/packages/comp/sbml/SBaseRef.cpp:987:29: warning: ‘removed’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T03:08:56,105     987 |   int ret = collectDeletions(removed, &toremove);
2025-09-08T03:08:56,105         |             ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T03:08:56,105   ./base/sbml/packages/comp/sbml/SBaseRef.cpp:974:16: note: ‘removed’ was declared here
2025-09-08T03:08:56,105     974 |   set<SBase*>* removed;
2025-09-08T03:08:56,105         |                ^~~~~~~
2025-09-08T03:09:02,756   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:09:02,756                    from ./base//sbml/RateRule.h:136,
2025-09-08T03:09:02,756                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2025-09-08T03:09:02,756   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:09:02,756      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:09:02,756         |                           ^~~~~~~~~~~~~~
2025-09-08T03:09:02,757   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:09:02,757                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:09:02,757                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:09:02,758                    from /usr/include/c++/14/ios:44,
2025-09-08T03:09:02,758                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:09:02,758                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:09:02,758                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2025-09-08T03:09:02,758   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:09:02,758     117 |     struct unary_function
2025-09-08T03:09:02,758         |            ^~~~~~~~~~~~~~
2025-09-08T03:09:15,769   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:09:15,769                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:09:15,770                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:09:15,770                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T03:09:15,770                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:63,
2025-09-08T03:09:15,770                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:34,
2025-09-08T03:09:15,770                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2025-09-08T03:09:15,770   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:09:15,770      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:09:15,770         |                           ^~~~~~~~~~~~~~
2025-09-08T03:09:15,771   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:09:15,771                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:09:15,771                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:09:15,771                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:33:
2025-09-08T03:09:15,771   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:09:15,771     117 |     struct unary_function
2025-09-08T03:09:15,772         |            ^~~~~~~~~~~~~~
2025-09-08T03:09:16,251   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:09:16,251   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:120:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:09:16,251     120 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T03:09:16,251         |              ^
2025-09-08T03:09:16,252   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:118:54: note: ‘props’ declared here
2025-09-08T03:09:16,252     118 |                         (const ConversionProperties &props) const
2025-09-08T03:09:16,252         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:09:17,015   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:120:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:09:17,015     120 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T03:09:17,015         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:09:24,468   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:09:24,469                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:09:24,469                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:09:24,469                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2025-09-08T03:09:24,469   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:09:24,469      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:09:24,469         |                           ^~~~~~~~~~~~~~
2025-09-08T03:09:24,470   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:09:24,470                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2025-09-08T03:09:24,470                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2025-09-08T03:09:24,470   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:09:24,470     117 |     struct unary_function
2025-09-08T03:09:24,470         |            ^~~~~~~~~~~~~~
2025-09-08T03:09:24,816   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T03:09:24,817   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:09:24,817      54 |   if (&orig == NULL)
2025-09-08T03:09:24,817         |             ^
2025-09-08T03:09:24,817   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2025-09-08T03:09:24,817      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2025-09-08T03:09:24,817         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:09:24,819   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2025-09-08T03:09:24,819   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:09:24,819      80 |   if (&rhs == NULL)
2025-09-08T03:09:24,820         |            ^
2025-09-08T03:09:24,820   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2025-09-08T03:09:24,820      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2025-09-08T03:09:24,820         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:09:25,295   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:09:25,295      80 |   if (&rhs == NULL)
2025-09-08T03:09:25,296         |   ^~
2025-09-08T03:09:25,303   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T03:09:25,303   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:09:25,303      54 |   if (&orig == NULL)
2025-09-08T03:09:25,303         |   ^~
2025-09-08T03:09:29,288   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:09:29,288                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:09:29,288                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:09:29,288                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2025-09-08T03:09:29,289   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:09:29,289      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:09:29,289         |                           ^~~~~~~~~~~~~~
2025-09-08T03:09:29,289   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:09:29,290                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2025-09-08T03:09:29,290                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2025-09-08T03:09:29,290   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:09:29,290     117 |     struct unary_function
2025-09-08T03:09:29,290         |            ^~~~~~~~~~~~~~
2025-09-08T03:09:29,519   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T03:09:29,520   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:09:29,520      50 |   if (&orig == NULL)
2025-09-08T03:09:29,520         |             ^
2025-09-08T03:09:29,520   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2025-09-08T03:09:29,520      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2025-09-08T03:09:29,520         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:09:29,522   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T03:09:29,522   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:09:29,522      76 |   if (&rhs == NULL)
2025-09-08T03:09:29,522         |            ^
2025-09-08T03:09:29,522   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2025-09-08T03:09:29,523      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2025-09-08T03:09:29,523         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:09:29,927   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T03:09:29,928   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:09:29,928      50 |   if (&orig == NULL)
2025-09-08T03:09:29,928         |   ^~
2025-09-08T03:09:29,928   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T03:09:29,929   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:09:29,929      76 |   if (&rhs == NULL)
2025-09-08T03:09:29,929         |   ^~
2025-09-08T03:09:32,948   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:09:32,949                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:09:32,949                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:09:32,949                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2025-09-08T03:09:32,949   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:09:32,949      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:09:32,949         |                           ^~~~~~~~~~~~~~
2025-09-08T03:09:32,950   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T03:09:32,950                    from /usr/include/c++/14/vector:68,
2025-09-08T03:09:32,950                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2025-09-08T03:09:32,950   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:09:32,950     117 |     struct unary_function
2025-09-08T03:09:32,950         |            ^~~~~~~~~~~~~~
2025-09-08T03:09:36,880   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:09:36,880                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:09:36,881                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:09:36,881                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2025-09-08T03:09:36,881   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:09:36,881      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:09:36,881         |                           ^~~~~~~~~~~~~~
2025-09-08T03:09:36,882   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:09:36,882                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2025-09-08T03:09:36,882                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2025-09-08T03:09:36,882   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:09:36,882     117 |     struct unary_function
2025-09-08T03:09:36,882         |            ^~~~~~~~~~~~~~
2025-09-08T03:09:37,115   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T03:09:37,115   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:09:37,115      53 |   if (&orig == NULL)
2025-09-08T03:09:37,115         |             ^
2025-09-08T03:09:37,115   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2025-09-08T03:09:37,115      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2025-09-08T03:09:37,115         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:09:37,118   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T03:09:37,118   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:09:37,118      83 |   if (&rhs == NULL)
2025-09-08T03:09:37,118         |            ^
2025-09-08T03:09:37,118   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2025-09-08T03:09:37,119      81 | SBMLUri::operator=(const SBMLUri& rhs)
2025-09-08T03:09:37,119         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T03:09:37,128   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2025-09-08T03:09:37,128   ./base/sbml/packages/comp/util/SBMLUri.cpp:157:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T03:09:37,128     157 |     ptr_fun<int,int>(tolower)); // scheme is icase
2025-09-08T03:09:37,128         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:09:37,129   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T03:09:37,129    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T03:09:37,129         |     ^~~~~~~
2025-09-08T03:09:37,134   ./base/sbml/packages/comp/util/SBMLUri.cpp:181:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T03:09:37,134     181 |      ptr_fun<int,int>(tolower)); // host is icase
2025-09-08T03:09:37,134         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T03:09:37,134   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T03:09:37,134    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T03:09:37,134         |     ^~~~~~~
2025-09-08T03:09:37,612   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T03:09:37,613   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:09:37,613      53 |   if (&orig == NULL)
2025-09-08T03:09:37,613         |   ^~
2025-09-08T03:09:37,614   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T03:09:37,614   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:09:37,614      83 |   if (&rhs == NULL)
2025-09-08T03:09:37,614         |   ^~
2025-09-08T03:09:41,874   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:09:41,874                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:09:41,874                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:09:41,874                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2025-09-08T03:09:41,874                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2025-09-08T03:09:41,874   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:09:41,874      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:09:41,874         |                           ^~~~~~~~~~~~~~
2025-09-08T03:09:41,875   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:09:41,875                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2025-09-08T03:09:41,875                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2025-09-08T03:09:41,876                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2025-09-08T03:09:41,876   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:09:41,876     117 |     struct unary_function
2025-09-08T03:09:41,876         |            ^~~~~~~~~~~~~~
2025-09-08T03:09:57,399   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:09:57,400                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:09:57,400                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:09:57,400                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2025-09-08T03:09:57,400                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2025-09-08T03:09:57,400   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:09:57,400      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:09:57,400         |                           ^~~~~~~~~~~~~~
2025-09-08T03:09:57,401   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:09:57,401                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2025-09-08T03:09:57,401                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2025-09-08T03:09:57,401                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2025-09-08T03:09:57,401   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:09:57,402     117 |     struct unary_function
2025-09-08T03:09:57,402         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:01,277   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:10:01,277                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:10:01,277                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:10:01,278                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2025-09-08T03:10:01,278                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2025-09-08T03:10:01,278   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:01,278      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:01,278         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:01,279   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:01,279                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2025-09-08T03:10:01,279                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2025-09-08T03:10:01,279                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2025-09-08T03:10:01,279   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:01,279     117 |     struct unary_function
2025-09-08T03:10:01,279         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:05,172   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:10:05,172                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:10:05,172                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:10:05,172                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2025-09-08T03:10:05,173   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:05,173      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:05,173         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:05,173   In file included from /usr/include/c++/14/functional:49,
2025-09-08T03:10:05,173                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2025-09-08T03:10:05,173   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:05,174     117 |     struct unary_function
2025-09-08T03:10:05,174         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:05,863   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:05,863      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T03:10:05,863         |                       ^~~~~~~~~~~~~~
2025-09-08T03:10:05,863   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:05,863     117 |     struct unary_function
2025-09-08T03:10:05,863         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:06,027   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T03:10:06,027   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T03:10:06,027     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T03:10:06,027         |            ^
2025-09-08T03:10:06,027   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2025-09-08T03:10:06,027     325 |   virtual bool visit (const SBase &x)
2025-09-08T03:10:06,027         |                       ~~~~~~~~~~~~~^
2025-09-08T03:10:06,045   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T03:10:06,045   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T03:10:06,045     481 |   if (&d == NULL) return 0;
2025-09-08T03:10:06,045         |          ^
2025-09-08T03:10:06,046   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2025-09-08T03:10:06,046     479 | CompValidator::validate (const SBMLDocument& d)
2025-09-08T03:10:06,046         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T03:10:06,060   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T03:10:06,060   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T03:10:06,060     610 |   if (&filename == NULL) return 0;
2025-09-08T03:10:06,060         |                 ^
2025-09-08T03:10:06,061   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2025-09-08T03:10:06,061     608 | CompValidator::validate (const std::string& filename)
2025-09-08T03:10:06,061         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:10:06,839   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T03:10:06,839   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:10:06,839     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T03:10:06,840         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:10:06,858   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T03:10:06,858   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:10:06,858     481 |   if (&d == NULL) return 0;
2025-09-08T03:10:06,858         |   ^~
2025-09-08T03:10:06,887   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T03:10:06,887   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:10:06,887     610 |   if (&filename == NULL) return 0;
2025-09-08T03:10:06,887         |   ^~
2025-09-08T03:10:12,063   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:10:12,063                    from ./base//sbml/Model.h:409,
2025-09-08T03:10:12,063                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2025-09-08T03:10:12,064   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:12,064      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:12,064         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:12,065   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:12,065                    from ./base//sbml/Model.h:407:
2025-09-08T03:10:12,065   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:12,065     117 |     struct unary_function
2025-09-08T03:10:12,065         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:16,357   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:10:16,358                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:10:16,358                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:10:16,358                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2025-09-08T03:10:16,358   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:16,358      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:16,358         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:16,359   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:16,359                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:10:16,359   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:16,359     117 |     struct unary_function
2025-09-08T03:10:16,359         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:20,605   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:10:20,605                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:10:20,605                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:10:20,606                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T03:10:20,606                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2025-09-08T03:10:20,606   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:20,606      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:20,606         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:20,607   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:20,607                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2025-09-08T03:10:20,607   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:20,607     117 |     struct unary_function
2025-09-08T03:10:20,607         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:24,745   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:10:24,745                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:10:24,745                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:10:24,745                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2025-09-08T03:10:24,745   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:24,746      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:24,746         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:24,746   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:24,746                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:10:24,747   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:24,747     117 |     struct unary_function
2025-09-08T03:10:24,747         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:28,558   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:10:28,559                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:10:28,559                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:10:28,559                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2025-09-08T03:10:28,559   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:28,559      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:28,559         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:28,560   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:28,560                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:10:28,560   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:28,560     117 |     struct unary_function
2025-09-08T03:10:28,560         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:32,556   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:10:32,556                    from ./base//sbml/Model.h:409,
2025-09-08T03:10:32,556                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2025-09-08T03:10:32,556   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:32,557      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:32,557         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:32,558   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:32,558                    from ./base//sbml/Model.h:407:
2025-09-08T03:10:32,558   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:32,558     117 |     struct unary_function
2025-09-08T03:10:32,558         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:39,949   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:10:39,949                    from ./base//sbml/Model.h:409,
2025-09-08T03:10:39,949                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2025-09-08T03:10:39,950   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:39,950      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:39,950         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:39,950   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:39,951                    from ./base//sbml/Model.h:407:
2025-09-08T03:10:39,951   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:39,951     117 |     struct unary_function
2025-09-08T03:10:39,951         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:44,396   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:10:44,396                    from ./base//sbml/Model.h:409,
2025-09-08T03:10:44,396                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2025-09-08T03:10:44,396   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:44,397      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:44,397         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:44,397   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:44,398                    from ./base//sbml/Model.h:407:
2025-09-08T03:10:44,398   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:44,398     117 |     struct unary_function
2025-09-08T03:10:44,398         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:51,837   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:10:51,837                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:10:51,837                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:10:51,837                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T03:10:51,838                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2025-09-08T03:10:51,838                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2025-09-08T03:10:51,838   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:51,838      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:51,838         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:51,839   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:51,839                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:10:51,839                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:10:51,839                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:10:51,839                    from ./base//sbml/SBase.h:154,
2025-09-08T03:10:51,839                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2025-09-08T03:10:51,839   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:51,839     117 |     struct unary_function
2025-09-08T03:10:51,839         |            ^~~~~~~~~~~~~~
2025-09-08T03:10:56,716   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:10:56,717                    from ./base//sbml/Model.h:409,
2025-09-08T03:10:56,717                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2025-09-08T03:10:56,717   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:10:56,717      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:10:56,717         |                           ^~~~~~~~~~~~~~
2025-09-08T03:10:56,718   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:10:56,718                    from ./base//sbml/Model.h:407:
2025-09-08T03:10:56,718   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:10:56,718     117 |     struct unary_function
2025-09-08T03:10:56,718         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:00,811   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:11:00,811                    from ./base//sbml/Model.h:409,
2025-09-08T03:11:00,812                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2025-09-08T03:11:00,812   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:00,812      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:00,812         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:00,813   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:00,813                    from ./base//sbml/Model.h:407:
2025-09-08T03:11:00,813   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:00,813     117 |     struct unary_function
2025-09-08T03:11:00,813         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:04,806   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:11:04,806                    from ./base//sbml/Model.h:409,
2025-09-08T03:11:04,807                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2025-09-08T03:11:04,807   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:04,807      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:04,807         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:04,808   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:04,808                    from ./base//sbml/Model.h:407:
2025-09-08T03:11:04,808   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:04,808     117 |     struct unary_function
2025-09-08T03:11:04,808         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:08,861   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:11:08,861                    from ./base//sbml/Model.h:409,
2025-09-08T03:11:08,861                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2025-09-08T03:11:08,861   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:08,861      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:08,861         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:08,862   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:08,862                    from ./base//sbml/Model.h:407:
2025-09-08T03:11:08,862   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:08,862     117 |     struct unary_function
2025-09-08T03:11:08,863         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:12,983   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:11:12,983                    from ./base//sbml/Model.h:409,
2025-09-08T03:11:12,984                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2025-09-08T03:11:12,984   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:12,984      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:12,984         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:12,985   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:12,985                    from ./base//sbml/Model.h:407:
2025-09-08T03:11:12,985   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:12,985     117 |     struct unary_function
2025-09-08T03:11:12,985         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:17,309   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:11:17,309                    from ./base//sbml/Model.h:409,
2025-09-08T03:11:17,309                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2025-09-08T03:11:17,309   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:17,309      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:17,309         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:17,310   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:17,310                    from ./base//sbml/Model.h:407:
2025-09-08T03:11:17,310   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:17,310     117 |     struct unary_function
2025-09-08T03:11:17,310         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:22,429   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:11:22,429                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:11:22,430                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:11:22,430                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:11:22,430                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:11:22,430                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2025-09-08T03:11:22,430                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2025-09-08T03:11:22,430   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:22,430      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:22,430         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:22,431   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:22,431                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:11:22,431                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:11:22,431                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T03:11:22,432   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:22,432     117 |     struct unary_function
2025-09-08T03:11:22,432         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:22,777   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:11:22,777                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T03:11:22,778                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2025-09-08T03:11:22,778   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:22,778     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:22,778         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:11:22,778   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:22,778     117 |     struct unary_function
2025-09-08T03:11:22,778         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:22,785   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:22,786     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:22,786         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:11:22,786   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:22,786     117 |     struct unary_function
2025-09-08T03:11:22,786         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:22,802   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T03:11:22,802   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:22,803     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:22,803         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:11:22,803   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:22,803     117 |     struct unary_function
2025-09-08T03:11:22,803         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:27,452   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:11:27,452                    from ./base//sbml/Model.h:409,
2025-09-08T03:11:27,452                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:43,
2025-09-08T03:11:27,453                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2025-09-08T03:11:27,453   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:27,453      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:27,453         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:27,453   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:27,453                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:11:27,453                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:11:27,454                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42:
2025-09-08T03:11:27,454   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:27,454     117 |     struct unary_function
2025-09-08T03:11:27,454         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:27,829   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:11:27,830                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T03:11:27,830   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:27,830     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:27,830         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:11:27,830   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:27,830     117 |     struct unary_function
2025-09-08T03:11:27,830         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:27,837   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:27,837     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:27,837         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:11:27,837   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:27,837     117 |     struct unary_function
2025-09-08T03:11:27,837         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:27,853   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T03:11:27,853   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:27,853     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:27,853         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:11:27,853   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:27,853     117 |     struct unary_function
2025-09-08T03:11:27,853         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:33,507   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:11:33,507                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:11:33,507                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:11:33,507                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T03:11:33,507                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:49,
2025-09-08T03:11:33,508                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2025-09-08T03:11:33,508   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:33,508      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:33,508         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:33,509   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:33,509                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:11:33,509                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:11:33,509                    from /usr/include/c++/14/ios:44,
2025-09-08T03:11:33,509                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:11:33,509                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2025-09-08T03:11:33,509   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:33,509     117 |     struct unary_function
2025-09-08T03:11:33,509         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:37,472   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:11:37,472                    from ./base//sbml/Model.h:409,
2025-09-08T03:11:37,472                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:45,
2025-09-08T03:11:37,472                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2025-09-08T03:11:37,472   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:37,472      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:37,473         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:37,473   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:37,473                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:11:37,473                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:11:37,473                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44:
2025-09-08T03:11:37,473   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:37,473     117 |     struct unary_function
2025-09-08T03:11:37,473         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:37,849   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:11:37,849                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2025-09-08T03:11:37,849   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:37,849     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:37,850         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:11:37,850   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:37,850     117 |     struct unary_function
2025-09-08T03:11:37,850         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:37,857   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:37,857     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:37,857         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:11:37,858   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:37,858     117 |     struct unary_function
2025-09-08T03:11:37,858         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:37,874   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:51:
2025-09-08T03:11:37,874   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:37,874     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:37,874         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:11:37,874   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:37,875     117 |     struct unary_function
2025-09-08T03:11:37,875         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:43,490   In file included from ./base//sbml/packages/fbc/sbml/Association.h:51,
2025-09-08T03:11:43,490                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2025-09-08T03:11:43,491   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:43,491      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:43,491         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:43,491   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:43,492                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:11:43,492                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:11:43,492                    from /usr/include/c++/14/ios:44,
2025-09-08T03:11:43,492                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:11:43,492                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:11:43,492                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2025-09-08T03:11:43,492   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:43,492     117 |     struct unary_function
2025-09-08T03:11:43,492         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:51,367   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:69,
2025-09-08T03:11:51,367                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2025-09-08T03:11:51,367   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:51,367      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:51,368         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:51,368   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:51,368                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:11:51,368                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:11:51,369                    from /usr/include/c++/14/ios:44,
2025-09-08T03:11:51,369                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:11:51,369                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:11:51,369                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2025-09-08T03:11:51,369   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:51,369     117 |     struct unary_function
2025-09-08T03:11:51,369         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:58,658   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:47,
2025-09-08T03:11:58,658                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2025-09-08T03:11:58,658   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:58,658      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:11:58,659         |                           ^~~~~~~~~~~~~~
2025-09-08T03:11:58,659   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:11:58,659                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:11:58,660                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:11:58,660                    from /usr/include/c++/14/ios:44,
2025-09-08T03:11:58,660                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:11:58,660                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:11:58,660                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2025-09-08T03:11:58,660   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:58,660     117 |     struct unary_function
2025-09-08T03:11:58,660         |            ^~~~~~~~~~~~~~
2025-09-08T03:11:59,176   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:11:59,176     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:11:59,176         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:11:59,176   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:11:59,176     117 |     struct unary_function
2025-09-08T03:11:59,176         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:05,365   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:47,
2025-09-08T03:12:05,365                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2025-09-08T03:12:05,365   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:05,366      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:05,366         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:05,366   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:05,366                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:12:05,367                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:12:05,367                    from /usr/include/c++/14/ios:44,
2025-09-08T03:12:05,367                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:12:05,367                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:12:05,367                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2025-09-08T03:12:05,367   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:05,367     117 |     struct unary_function
2025-09-08T03:12:05,367         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:05,895   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:05,895     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:05,895         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:12:05,895   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:05,895     117 |     struct unary_function
2025-09-08T03:12:05,895         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:11,855   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:66,
2025-09-08T03:12:11,855                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2025-09-08T03:12:11,855   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:11,855      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:11,855         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:11,856   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:11,856                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:12:11,856                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:12:11,856                    from /usr/include/c++/14/ios:44,
2025-09-08T03:12:11,857                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:12:11,857                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:12:11,857                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2025-09-08T03:12:11,857   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:11,857     117 |     struct unary_function
2025-09-08T03:12:11,857         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:12,373   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68:
2025-09-08T03:12:12,373   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:12,373     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:12,373         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:12:12,373   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:12,374     117 |     struct unary_function
2025-09-08T03:12:12,374         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:12,381   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:12,381     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:12,381         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:12:12,381   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:12,381     117 |     struct unary_function
2025-09-08T03:12:12,381         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:19,565   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:12:19,566                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:12:19,566                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:12:19,566                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:12:19,566                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:12:19,566                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:36,
2025-09-08T03:12:19,566                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2025-09-08T03:12:19,566   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:19,566      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:19,566         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:19,567   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:19,567                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:12:19,567                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:12:19,567                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35:
2025-09-08T03:12:19,568   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:19,568     117 |     struct unary_function
2025-09-08T03:12:19,568         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:19,876   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:12:19,876                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T03:12:19,876                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T03:12:19,876                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2025-09-08T03:12:19,877   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:19,877     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:19,877         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:12:19,877   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:19,877     117 |     struct unary_function
2025-09-08T03:12:19,877         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:19,884   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:19,885     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:19,885         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:12:19,885   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:19,885     117 |     struct unary_function
2025-09-08T03:12:19,885         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:19,901   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T03:12:19,901   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:19,901     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:19,901         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:12:19,901   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:19,902     117 |     struct unary_function
2025-09-08T03:12:19,902         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:19,911   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:12:19,911   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:97:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:12:19,911      97 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T03:12:19,911         |              ^
2025-09-08T03:12:19,911   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:95:70: note: ‘props’ declared here
2025-09-08T03:12:19,911      95 |   CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:12:19,912         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:12:20,615   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:97:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:12:20,615      97 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T03:12:20,615         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:12:27,200   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:12:27,200                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:12:27,200                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:12:27,200                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:12:27,201                    from ./base//sbml/conversion/SBMLConverter.h:70,
2025-09-08T03:12:27,201                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:36,
2025-09-08T03:12:27,201                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2025-09-08T03:12:27,201   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:27,201      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:27,201         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:27,202   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:27,202                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:12:27,202                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:12:27,202                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35:
2025-09-08T03:12:27,202   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:27,202     117 |     struct unary_function
2025-09-08T03:12:27,202         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:27,511   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:12:27,511                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T03:12:27,511                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T03:12:27,511                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2025-09-08T03:12:27,511   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:27,511     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:27,511         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:12:27,511   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:27,511     117 |     struct unary_function
2025-09-08T03:12:27,512         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:27,519   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:27,519     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:27,519         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:12:27,519   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:27,519     117 |     struct unary_function
2025-09-08T03:12:27,519         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:27,535   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T03:12:27,535   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:27,536     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:27,536         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:12:27,536   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:27,536     117 |     struct unary_function
2025-09-08T03:12:27,536         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:27,545   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T03:12:27,545   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:98:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T03:12:27,545      98 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T03:12:27,546         |              ^
2025-09-08T03:12:27,546   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:96:70: note: ‘props’ declared here
2025-09-08T03:12:27,546      96 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T03:12:27,546         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:12:28,223   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:98:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:12:28,224      98 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T03:12:28,224         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:12:33,490   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:12:33,490                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:12:33,490                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:12:33,490                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2025-09-08T03:12:33,490                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2025-09-08T03:12:33,491   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:33,491      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:33,491         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:33,492   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:33,492                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:63,
2025-09-08T03:12:33,492                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2025-09-08T03:12:33,492                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2025-09-08T03:12:33,492   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:33,492     117 |     struct unary_function
2025-09-08T03:12:33,493         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:34,033   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:12:34,033                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T03:12:34,034   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:34,034     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:34,034         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:12:34,034   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:34,034     117 |     struct unary_function
2025-09-08T03:12:34,034         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:34,041   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:34,042     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:34,042         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:12:34,042   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:34,042     117 |     struct unary_function
2025-09-08T03:12:34,042         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:37,609   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:12:37,610                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:12:37,610                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:12:37,610                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2025-09-08T03:12:37,610                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2025-09-08T03:12:37,610   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:37,610      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:37,610         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:37,611   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:37,611                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:63,
2025-09-08T03:12:37,611                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2025-09-08T03:12:37,611                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2025-09-08T03:12:37,611   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:37,612     117 |     struct unary_function
2025-09-08T03:12:37,612         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:41,151   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:12:41,151                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:12:41,151                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:12:41,151                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2025-09-08T03:12:41,151   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:41,151      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:41,151         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:41,152   In file included from /usr/include/c++/14/functional:49,
2025-09-08T03:12:41,152                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2025-09-08T03:12:41,152   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:41,152     117 |     struct unary_function
2025-09-08T03:12:41,152         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:41,704   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:12:41,705                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T03:12:41,705                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T03:12:41,705                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2025-09-08T03:12:41,705   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:41,705     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:41,705         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:12:41,705   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:41,705     117 |     struct unary_function
2025-09-08T03:12:41,705         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:41,713   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:41,713     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:41,713         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:12:41,713   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:41,713     117 |     struct unary_function
2025-09-08T03:12:41,713         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:41,729   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T03:12:41,729   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:41,729     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:41,729         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:12:41,730   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:41,730     117 |     struct unary_function
2025-09-08T03:12:41,730         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:41,736   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:41,736      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T03:12:41,737         |                       ^~~~~~~~~~~~~~
2025-09-08T03:12:41,737   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:41,737     117 |     struct unary_function
2025-09-08T03:12:41,737         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:41,864   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T03:12:41,864   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T03:12:41,865     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T03:12:41,865         |            ^
2025-09-08T03:12:41,865   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2025-09-08T03:12:41,865     288 |   virtual bool visit (const SBase &x)
2025-09-08T03:12:41,865         |                       ~~~~~~~~~~~~~^
2025-09-08T03:12:41,877   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T03:12:41,877   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T03:12:41,877     383 |   if (&d == NULL) return 0;
2025-09-08T03:12:41,877         |          ^
2025-09-08T03:12:41,877   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2025-09-08T03:12:41,877     381 | FbcValidator::validate (const SBMLDocument& d)
2025-09-08T03:12:41,877         |                         ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T03:12:41,879   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T03:12:41,880   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T03:12:41,880     413 |   if (&filename == NULL) return 0;
2025-09-08T03:12:41,880         |                 ^
2025-09-08T03:12:41,880   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2025-09-08T03:12:41,880     411 | FbcValidator::validate (const std::string& filename)
2025-09-08T03:12:41,880         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:12:42,584   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T03:12:42,584   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:12:42,585     383 |   if (&d == NULL) return 0;
2025-09-08T03:12:42,585         |   ^~
2025-09-08T03:12:42,595   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T03:12:42,595   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:12:42,595     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T03:12:42,596         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:12:42,607   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T03:12:42,608   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:12:42,608     413 |   if (&filename == NULL) return 0;
2025-09-08T03:12:42,608         |   ^~
2025-09-08T03:12:46,432   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:12:46,432                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:12:46,432                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:12:46,432                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2025-09-08T03:12:46,432   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:46,432      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:46,432         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:46,433   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:46,433                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:12:46,433   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:46,433     117 |     struct unary_function
2025-09-08T03:12:46,433         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:46,969   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:12:46,969                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T03:12:46,969   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:46,969     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:46,969         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:12:46,969   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:46,969     117 |     struct unary_function
2025-09-08T03:12:46,970         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:46,976   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:46,976     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:46,976         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:12:46,976   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:46,976     117 |     struct unary_function
2025-09-08T03:12:46,977         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:50,034   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:12:50,035                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:12:50,035                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:12:50,035                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2025-09-08T03:12:50,035   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:50,035      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:50,035         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:50,035   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:50,036                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:12:50,036   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:50,036     117 |     struct unary_function
2025-09-08T03:12:50,036         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:53,684   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:12:53,684                    from ./base//sbml/Model.h:409,
2025-09-08T03:12:53,684                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2025-09-08T03:12:53,684   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:53,685      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:53,685         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:53,685   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:53,685                    from ./base//sbml/Model.h:407:
2025-09-08T03:12:53,685   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:53,685     117 |     struct unary_function
2025-09-08T03:12:53,685         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:54,131   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:12:54,132                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T03:12:54,132                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2025-09-08T03:12:54,132   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:54,132     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:54,132         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:12:54,132   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:54,132     117 |     struct unary_function
2025-09-08T03:12:54,132         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:54,139   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:54,139     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:54,139         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:12:54,139   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:54,139     117 |     struct unary_function
2025-09-08T03:12:54,139         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:54,155   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T03:12:54,155   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:54,155     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:54,155         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:12:54,155   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:54,155     117 |     struct unary_function
2025-09-08T03:12:54,155         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:57,717   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:12:57,717                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:12:57,717                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:12:57,717                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2025-09-08T03:12:57,717                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2025-09-08T03:12:57,717   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:57,718      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:12:57,718         |                           ^~~~~~~~~~~~~~
2025-09-08T03:12:57,718   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:12:57,719                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2025-09-08T03:12:57,719   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:57,719     117 |     struct unary_function
2025-09-08T03:12:57,719         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:58,192   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T03:12:58,192                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2025-09-08T03:12:58,192                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2025-09-08T03:12:58,192   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:58,192     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:58,192         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:12:58,193   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:58,193     117 |     struct unary_function
2025-09-08T03:12:58,193         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:58,200   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:58,200     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:58,200         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:12:58,201   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:58,201     117 |     struct unary_function
2025-09-08T03:12:58,201         |            ^~~~~~~~~~~~~~
2025-09-08T03:12:58,217   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2025-09-08T03:12:58,217   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:12:58,217     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:12:58,217         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:12:58,217   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:12:58,218     117 |     struct unary_function
2025-09-08T03:12:58,218         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:02,836   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:13:02,836                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:13:02,836                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:13:02,836                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:13:02,836                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:13:02,836                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2025-09-08T03:13:02,836                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2025-09-08T03:13:02,836   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:02,836      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:02,837         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:02,837   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:02,837                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:13:02,838                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:13:02,838                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T03:13:02,838   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:02,838     117 |     struct unary_function
2025-09-08T03:13:02,838         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:03,168   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:13:03,168                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:13:03,168                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T03:13:03,168                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:41:
2025-09-08T03:13:03,168   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:03,168     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:03,169         |                             ^~~~~~~~
2025-09-08T03:13:03,169   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:13:03,169     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:13:03,169         |                              ^~~~~~~~
2025-09-08T03:13:03,172   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:03,172     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:03,172         |                             ^~~~~~~~
2025-09-08T03:13:03,172   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:13:03,172   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:13:03,173     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:13:03,173         |                          ^~~~~~~~
2025-09-08T03:13:03,182   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:03,182     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:03,182         |                             ^~~~~~~~
2025-09-08T03:13:03,183   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:13:03,183                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:13:03,183   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:13:03,183     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:13:03,183         |                                   ^~~~~~~~
2025-09-08T03:13:03,188   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:03,189     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:03,189         |                             ^~~~~~~~
2025-09-08T03:13:03,189   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:13:03,189     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:13:03,189         |                           ^~~~~~~~
2025-09-08T03:13:03,192   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:03,193     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:03,193         |                             ^~~~~~~~
2025-09-08T03:13:03,193   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:13:03,193   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:13:03,193     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:13:03,193         |                      ^~~~~~~~
2025-09-08T03:13:08,177   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:13:08,177                    from ./base//sbml/Model.h:409,
2025-09-08T03:13:08,178                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:50,
2025-09-08T03:13:08,178                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2025-09-08T03:13:08,178   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:08,178      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:08,178         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:08,179   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:08,179                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:13:08,179                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:13:08,179                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49:
2025-09-08T03:13:08,179   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:08,179     117 |     struct unary_function
2025-09-08T03:13:08,179         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:08,575   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:13:08,576                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:13:08,576                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55:
2025-09-08T03:13:08,576   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:08,576     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:08,576         |                             ^~~~~~~~
2025-09-08T03:13:08,576   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:13:08,576     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:13:08,576         |                              ^~~~~~~~
2025-09-08T03:13:08,579   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:08,579     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:08,579         |                             ^~~~~~~~
2025-09-08T03:13:08,580   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:13:08,580   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:13:08,580     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:13:08,580         |                          ^~~~~~~~
2025-09-08T03:13:08,589   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:08,590     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:08,590         |                             ^~~~~~~~
2025-09-08T03:13:08,590   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:13:08,590                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:13:08,590   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:13:08,590     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:13:08,591         |                                   ^~~~~~~~
2025-09-08T03:13:08,596   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:08,596     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:08,596         |                             ^~~~~~~~
2025-09-08T03:13:08,596   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:13:08,597     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:13:08,597         |                           ^~~~~~~~
2025-09-08T03:13:08,600   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:08,600     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:08,600         |                             ^~~~~~~~
2025-09-08T03:13:08,601   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:13:08,601   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:13:08,601     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:13:08,601         |                      ^~~~~~~~
2025-09-08T03:13:12,888   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:13:12,888                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:13:12,889                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:13:12,889                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T03:13:12,889                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:59,
2025-09-08T03:13:12,889                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2025-09-08T03:13:12,889   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:12,889      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:12,889         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:12,890   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:12,890                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:13:12,890                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:13:12,890                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2025-09-08T03:13:12,890   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:12,890     117 |     struct unary_function
2025-09-08T03:13:12,890         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:17,340   In file included from ./base//sbml/SpeciesReference.h:286,
2025-09-08T03:13:17,340                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:46,
2025-09-08T03:13:17,341                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2025-09-08T03:13:17,341   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:17,341      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:17,341         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:17,342   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:17,342                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:13:17,342                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:13:17,342                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45:
2025-09-08T03:13:17,342   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:17,342     117 |     struct unary_function
2025-09-08T03:13:17,342         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:17,880   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:13:17,881                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:13:17,881                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:51:
2025-09-08T03:13:17,881   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:17,881     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:17,881         |                             ^~~~~~~~
2025-09-08T03:13:17,881   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:13:17,881     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:13:17,882         |                              ^~~~~~~~
2025-09-08T03:13:17,884   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:17,885     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:17,885         |                             ^~~~~~~~
2025-09-08T03:13:17,885   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:13:17,885   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:13:17,885     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:13:17,885         |                          ^~~~~~~~
2025-09-08T03:13:17,908   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:17,909     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:17,909         |                             ^~~~~~~~
2025-09-08T03:13:17,909   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:13:17,909                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:13:17,909   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:13:17,909     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:13:17,909         |                                   ^~~~~~~~
2025-09-08T03:13:17,915   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:17,915     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:17,915         |                             ^~~~~~~~
2025-09-08T03:13:17,915   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:13:17,915     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:13:17,916         |                           ^~~~~~~~
2025-09-08T03:13:17,919   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:17,919     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:17,919         |                             ^~~~~~~~
2025-09-08T03:13:17,920   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:13:17,920   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:13:17,920     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:13:17,920         |                      ^~~~~~~~
2025-09-08T03:13:21,527   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:13:21,527                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:13:21,528                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:13:21,528                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:13:21,528                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:13:21,528                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:13:21,528                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:13:21,528                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T03:13:21,528                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2025-09-08T03:13:21,528   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:21,528      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:21,528         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:21,529   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:21,529                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2025-09-08T03:13:21,529   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:21,529     117 |     struct unary_function
2025-09-08T03:13:21,530         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:27,983   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:13:27,983                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:13:27,983                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:13:27,983                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:13:27,983                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:13:27,983                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:13:27,983                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:13:27,983                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T03:13:27,983                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T03:13:27,984                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:13:27,984                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2025-09-08T03:13:27,984   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:27,984      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:27,984         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:27,985   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:27,985                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2025-09-08T03:13:27,985   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:27,985     117 |     struct unary_function
2025-09-08T03:13:27,985         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:28,302   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:28,303     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:28,303         |                             ^~~~~~~~
2025-09-08T03:13:28,303   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:13:28,303     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:13:28,303         |                              ^~~~~~~~
2025-09-08T03:13:28,306   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:28,306     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:28,306         |                             ^~~~~~~~
2025-09-08T03:13:28,306   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61,
2025-09-08T03:13:28,307                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:33:
2025-09-08T03:13:28,307   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:13:28,307     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:13:28,307         |                          ^~~~~~~~
2025-09-08T03:13:28,316   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:28,317     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:28,317         |                             ^~~~~~~~
2025-09-08T03:13:28,317   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:13:28,317                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:13:28,317   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:13:28,317     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:13:28,318         |                                   ^~~~~~~~
2025-09-08T03:13:28,323   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:28,323     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:28,323         |                             ^~~~~~~~
2025-09-08T03:13:28,323   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:13:28,324     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:13:28,324         |                           ^~~~~~~~
2025-09-08T03:13:28,327   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:28,327     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:28,327         |                             ^~~~~~~~
2025-09-08T03:13:28,328   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:13:28,328   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:13:28,328     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:13:28,328         |                      ^~~~~~~~
2025-09-08T03:13:30,075   ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp: In member function ‘virtual void CompartmentGlyph::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T03:13:30,075   ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:481:70: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T03:13:30,075     481 |                         if (getErrorLog()->getNumErrors() == numErrs + 1 &&
2025-09-08T03:13:30,075         |                                                              ~~~~~~~~^~~
2025-09-08T03:13:30,076   ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:359:22: note: ‘numErrs’ was declared here
2025-09-08T03:13:30,076     359 |         unsigned int numErrs;
2025-09-08T03:13:30,076         |                      ^~~~~~~
2025-09-08T03:13:33,684   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:13:33,684                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:13:33,684                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:13:33,684                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:13:33,685                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:13:33,685                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:13:33,685                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:13:33,685                    from ./base//sbml/packages/layout/sbml/LineSegment.h:55,
2025-09-08T03:13:33,685                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:56,
2025-09-08T03:13:33,685                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2025-09-08T03:13:33,685   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:33,685      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:33,685         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:33,685   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:33,686                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:54:
2025-09-08T03:13:33,686   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:33,686     117 |     struct unary_function
2025-09-08T03:13:33,686         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:33,980   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:33,980     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T03:13:33,980         |                        ^~~~~~~~
2025-09-08T03:13:33,980   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T03:13:33,980     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T03:13:33,981         |                        ^~~~~~~~
2025-09-08T03:13:38,708   In file included from ./base//sbml/packages/layout/sbml/Curve.h:66,
2025-09-08T03:13:38,708                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2025-09-08T03:13:38,709   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:38,709      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:38,709         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:38,709   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:38,710                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:13:38,710                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:13:38,710                    from /usr/include/c++/14/ios:44,
2025-09-08T03:13:38,710                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:13:38,710                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:13:38,710                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2025-09-08T03:13:38,710   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:38,710     117 |     struct unary_function
2025-09-08T03:13:38,710         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:39,308   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67:
2025-09-08T03:13:39,308   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:39,309     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T03:13:39,309         |                        ^~~~~~~~
2025-09-08T03:13:39,309   In file included from ./base/sbml/packages/layout/sbml/Curve.cpp:35:
2025-09-08T03:13:39,309   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T03:13:39,309     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T03:13:39,309         |                        ^~~~~~~~
2025-09-08T03:13:44,902   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:13:44,902                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:13:44,902                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:13:44,902                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:13:44,902                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:13:44,903                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:13:44,903                    from ./base//sbml/packages/layout/sbml/Dimensions.h:57,
2025-09-08T03:13:44,903                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2025-09-08T03:13:44,903   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:44,903      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:44,903         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:44,903   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:44,903                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:13:44,904                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:13:44,904                    from /usr/include/c++/14/ios:44,
2025-09-08T03:13:44,904                    from /usr/include/c++/14/istream:40,
2025-09-08T03:13:44,904                    from /usr/include/c++/14/sstream:40,
2025-09-08T03:13:44,904                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2025-09-08T03:13:44,904   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:44,904     117 |     struct unary_function
2025-09-08T03:13:44,904         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:50,423   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:55,
2025-09-08T03:13:50,423                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2025-09-08T03:13:50,423   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:50,423      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:50,424         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:50,424   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:50,424                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:53:
2025-09-08T03:13:50,424   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:50,424     117 |     struct unary_function
2025-09-08T03:13:50,424         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:51,052   In file included from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:55,
2025-09-08T03:13:51,052                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:57:
2025-09-08T03:13:51,052   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:51,052     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:51,052         |                             ^~~~~~~~
2025-09-08T03:13:51,052   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T03:13:51,052     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T03:13:51,053         |                            ^~~~~~~~
2025-09-08T03:13:51,057   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:51,057     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:51,057         |                             ^~~~~~~~
2025-09-08T03:13:51,058   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T03:13:51,058     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T03:13:51,058         |                          ^~~~~~~~
2025-09-08T03:13:51,060   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:51,060     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:51,060         |                             ^~~~~~~~
2025-09-08T03:13:51,061   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:34:
2025-09-08T03:13:51,061   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:13:51,061     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:13:51,061         |                          ^~~~~~~~
2025-09-08T03:13:51,063   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:51,063     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:51,063         |                             ^~~~~~~~
2025-09-08T03:13:51,063   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:35:
2025-09-08T03:13:51,064   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:13:51,064     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:13:51,064         |                      ^~~~~~~~
2025-09-08T03:13:51,066   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:51,066     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:51,066         |                             ^~~~~~~~
2025-09-08T03:13:51,066   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:36:
2025-09-08T03:13:51,066   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:13:51,066     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:13:51,066         |                              ^~~~~~~~
2025-09-08T03:13:51,069   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:51,070     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:51,070         |                             ^~~~~~~~
2025-09-08T03:13:51,070   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:13:51,070                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:37:
2025-09-08T03:13:51,070   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:13:51,070     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:13:51,070         |                                   ^~~~~~~~
2025-09-08T03:13:51,075   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:51,075     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:51,075         |                             ^~~~~~~~
2025-09-08T03:13:51,075   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:13:51,075     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:13:51,075         |                           ^~~~~~~~
2025-09-08T03:13:58,405   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:13:58,405                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:13:58,405                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:13:58,405                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:13:58,405                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:13:58,405                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:13:58,405                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:13:58,406                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T03:13:58,406                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T03:13:58,406                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T03:13:58,406                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2025-09-08T03:13:58,406   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:13:58,406      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:13:58,406         |                           ^~~~~~~~~~~~~~
2025-09-08T03:13:58,406   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:13:58,406                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:13:58,407                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:13:58,407                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:13:58,407                    from ./base//sbml/SBase.h:154,
2025-09-08T03:13:58,407                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T03:13:58,407   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:13:58,407     117 |     struct unary_function
2025-09-08T03:13:58,407         |            ^~~~~~~~~~~~~~
2025-09-08T03:13:58,728   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:58,728     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:58,728         |                             ^~~~~~~~
2025-09-08T03:13:58,728   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:13:58,728                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T03:13:58,728                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T03:13:58,728                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:41:
2025-09-08T03:13:58,729   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:13:58,729     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:13:58,729         |                              ^~~~~~~~
2025-09-08T03:13:58,730   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:58,731     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:58,731         |                             ^~~~~~~~
2025-09-08T03:13:58,731   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:13:58,731   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:13:58,731     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:13:58,731         |                          ^~~~~~~~
2025-09-08T03:13:58,740   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:58,740     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:58,740         |                             ^~~~~~~~
2025-09-08T03:13:58,740   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:13:58,740                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:13:58,740   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:13:58,741     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:13:58,741         |                                   ^~~~~~~~
2025-09-08T03:13:58,745   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:58,745     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:58,745         |                             ^~~~~~~~
2025-09-08T03:13:58,746   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:13:58,746     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:13:58,746         |                           ^~~~~~~~
2025-09-08T03:13:58,748   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:58,749     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:58,749         |                             ^~~~~~~~
2025-09-08T03:13:58,749   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:13:58,749   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:13:58,749     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:13:58,749         |                      ^~~~~~~~
2025-09-08T03:13:58,770   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67,
2025-09-08T03:13:58,770                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T03:13:58,770   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:58,770     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T03:13:58,770         |                        ^~~~~~~~
2025-09-08T03:13:58,771   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T03:13:58,771   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T03:13:58,771     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T03:13:58,771         |                        ^~~~~~~~
2025-09-08T03:13:58,773   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:58,774     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:58,774         |                             ^~~~~~~~
2025-09-08T03:13:58,774   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T03:13:58,774   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T03:13:58,774     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T03:13:58,774         |                            ^~~~~~~~
2025-09-08T03:13:58,779   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:13:58,779     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:13:58,779         |                             ^~~~~~~~
2025-09-08T03:13:58,779   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T03:13:58,780   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T03:13:58,780     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T03:13:58,780         |                          ^~~~~~~~
2025-09-08T03:13:58,805   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T03:13:58,805   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-08T03:13:58,805     373 |   if (&id != NULL && id.empty())
2025-09-08T03:13:58,805         |           ^
2025-09-08T03:13:58,805   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2025-09-08T03:13:58,806     371 | int GraphicalObject::setId(const std::string& id)
2025-09-08T03:13:58,806         |                            ~~~~~~~~~~~~~~~~~~~^~
2025-09-08T03:13:58,806   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T03:13:58,806   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T03:13:58,807     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T03:13:58,807         |               ^
2025-09-08T03:13:58,807   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2025-09-08T03:13:58,807     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2025-09-08T03:13:58,807         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:13:59,364   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T03:13:59,364   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:13:59,365     373 |   if (&id != NULL && id.empty())
2025-09-08T03:13:59,365         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2025-09-08T03:13:59,365   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T03:13:59,365   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:13:59,365     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T03:13:59,365         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2025-09-08T03:14:07,310   In file included from ./base//sbml/packages/layout/sbml/Layout.h:58,
2025-09-08T03:14:07,310                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2025-09-08T03:14:07,310   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:14:07,310      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:14:07,311         |                           ^~~~~~~~~~~~~~
2025-09-08T03:14:07,311   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:14:07,311                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:14:07,312                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:14:07,312                    from /usr/include/c++/14/ios:44,
2025-09-08T03:14:07,312                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:14:07,312                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:14:07,312                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2025-09-08T03:14:07,312   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:14:07,312     117 |     struct unary_function
2025-09-08T03:14:07,312         |            ^~~~~~~~~~~~~~
2025-09-08T03:14:07,907   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:14:07,907                    from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T03:14:07,907   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:07,907     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:07,907         |                             ^~~~~~~~
2025-09-08T03:14:07,907   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:14:07,908     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:14:07,908         |                              ^~~~~~~~
2025-09-08T03:14:07,910   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:07,911     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:07,911         |                             ^~~~~~~~
2025-09-08T03:14:07,911   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:14:07,911   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:14:07,911     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:14:07,911         |                          ^~~~~~~~
2025-09-08T03:14:07,921   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:07,921     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:07,921         |                             ^~~~~~~~
2025-09-08T03:14:07,921   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:14:07,921                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:14:07,922   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:14:07,922     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:14:07,922         |                                   ^~~~~~~~
2025-09-08T03:14:07,927   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:07,927     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:07,927         |                             ^~~~~~~~
2025-09-08T03:14:07,928   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:14:07,928     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:14:07,928         |                           ^~~~~~~~
2025-09-08T03:14:07,931   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:07,931     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:07,931         |                             ^~~~~~~~
2025-09-08T03:14:07,932   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:14:07,932   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:14:07,932     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:14:07,932         |                      ^~~~~~~~
2025-09-08T03:14:07,949   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:07,949     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:07,949         |                             ^~~~~~~~
2025-09-08T03:14:07,949   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:57,
2025-09-08T03:14:07,949                    from ./base/sbml/packages/layout/sbml/Layout.cpp:37:
2025-09-08T03:14:07,949   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T03:14:07,950     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T03:14:07,950         |                            ^~~~~~~~
2025-09-08T03:14:07,955   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:07,955     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:07,955         |                             ^~~~~~~~
2025-09-08T03:14:07,956   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T03:14:07,956     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T03:14:07,956         |                          ^~~~~~~~
2025-09-08T03:14:08,000   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2025-09-08T03:14:08,001   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:14:08,001     453 |   if (&(name) == NULL)
2025-09-08T03:14:08,001         |               ^
2025-09-08T03:14:08,001   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2025-09-08T03:14:08,001     448 | int Layout::setName (const std::string& name)
2025-09-08T03:14:08,001         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:14:08,706   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:14:08,706     453 |   if (&(name) == NULL)
2025-09-08T03:14:08,706         |   ^~
2025-09-08T03:14:20,098   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:14:20,099                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:14:20,099                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:14:20,099                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:14:20,099                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:14:20,099                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:14:20,099                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:14:20,099                    from ./base//sbml/packages/layout/sbml/LineSegment.h:55,
2025-09-08T03:14:20,099                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2025-09-08T03:14:20,100   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:14:20,100      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:14:20,100         |                           ^~~~~~~~~~~~~~
2025-09-08T03:14:20,100   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:14:20,100                    from ./base//sbml/packages/layout/sbml/LineSegment.h:52:
2025-09-08T03:14:20,100   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:14:20,100     117 |     struct unary_function
2025-09-08T03:14:20,100         |            ^~~~~~~~~~~~~~
2025-09-08T03:14:25,942   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:14:25,943                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:14:25,943                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:14:25,943                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:14:25,943                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:14:25,943                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:14:25,943                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:14:25,943                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2025-09-08T03:14:25,943   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:14:25,943      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:14:25,944         |                           ^~~~~~~~~~~~~~
2025-09-08T03:14:25,944   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:14:25,944                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T03:14:25,944                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T03:14:25,944                    from /usr/include/c++/14/ios:44,
2025-09-08T03:14:25,944                    from /usr/include/c++/14/istream:40,
2025-09-08T03:14:25,944                    from /usr/include/c++/14/sstream:40,
2025-09-08T03:14:25,944                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2025-09-08T03:14:25,944   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:14:25,945     117 |     struct unary_function
2025-09-08T03:14:25,945         |            ^~~~~~~~~~~~~~
2025-09-08T03:14:31,507   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61,
2025-09-08T03:14:31,507                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2025-09-08T03:14:31,507   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:14:31,507      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:14:31,507         |                           ^~~~~~~~~~~~~~
2025-09-08T03:14:31,508   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:14:31,508                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:59:
2025-09-08T03:14:31,508   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:14:31,508     117 |     struct unary_function
2025-09-08T03:14:31,508         |            ^~~~~~~~~~~~~~
2025-09-08T03:14:32,128   In file included from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:55,
2025-09-08T03:14:32,128                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63:
2025-09-08T03:14:32,128   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:32,128     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:32,128         |                             ^~~~~~~~
2025-09-08T03:14:32,128   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:14:32,129     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:14:32,129         |                                   ^~~~~~~~
2025-09-08T03:14:32,133   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:32,133     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:32,133         |                             ^~~~~~~~
2025-09-08T03:14:32,133   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:14:32,134     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:14:32,134         |                           ^~~~~~~~
2025-09-08T03:14:32,136   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:32,136     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:32,137         |                             ^~~~~~~~
2025-09-08T03:14:32,137   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:14:32,137                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:36:
2025-09-08T03:14:32,137   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:14:32,137     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:14:32,137         |                              ^~~~~~~~
2025-09-08T03:14:32,139   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:32,139     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:32,139         |                             ^~~~~~~~
2025-09-08T03:14:32,139   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:14:32,139   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:14:32,140     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:14:32,140         |                          ^~~~~~~~
2025-09-08T03:14:32,142   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:32,142     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:32,142         |                             ^~~~~~~~
2025-09-08T03:14:32,142   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:14:32,142   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:14:32,142     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:14:32,142         |                      ^~~~~~~~
2025-09-08T03:14:38,881   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:14:38,882                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:14:38,882                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:14:38,882                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:14:38,882                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:14:38,882                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:14:38,882                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:14:38,882                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T03:14:38,882                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T03:14:38,882                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:55,
2025-09-08T03:14:38,882                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2025-09-08T03:14:38,882   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:14:38,883      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:14:38,883         |                           ^~~~~~~~~~~~~~
2025-09-08T03:14:38,883   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:14:38,884                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:53:
2025-09-08T03:14:38,884   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:14:38,884     117 |     struct unary_function
2025-09-08T03:14:38,884         |            ^~~~~~~~~~~~~~
2025-09-08T03:14:39,196   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:39,196     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:39,196         |                             ^~~~~~~~
2025-09-08T03:14:39,197   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T03:14:39,197     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T03:14:39,197         |                            ^~~~~~~~
2025-09-08T03:14:39,203   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:39,203     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:39,203         |                             ^~~~~~~~
2025-09-08T03:14:39,203   In file included from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:31:
2025-09-08T03:14:39,203   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T03:14:39,203     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T03:14:39,203         |                          ^~~~~~~~
2025-09-08T03:14:45,399   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:14:45,399                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:14:45,399                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:14:45,400                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:14:45,400                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:14:45,400                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:14:45,400                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:14:45,400                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T03:14:45,400                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T03:14:45,400                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:50,
2025-09-08T03:14:45,400                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2025-09-08T03:14:45,400   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:14:45,400      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:14:45,400         |                           ^~~~~~~~~~~~~~
2025-09-08T03:14:45,401   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:14:45,401                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49:
2025-09-08T03:14:45,402   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:14:45,402     117 |     struct unary_function
2025-09-08T03:14:45,402         |            ^~~~~~~~~~~~~~
2025-09-08T03:14:45,720   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:45,720     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:45,720         |                             ^~~~~~~~
2025-09-08T03:14:45,721   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:14:45,721     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:14:45,721         |                          ^~~~~~~~
2025-09-08T03:14:45,724   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:45,724     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:45,724         |                             ^~~~~~~~
2025-09-08T03:14:45,724   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:14:45,724                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:31:
2025-09-08T03:14:45,724   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:14:45,725     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:14:45,725         |                              ^~~~~~~~
2025-09-08T03:14:45,734   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:45,735     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:45,735         |                             ^~~~~~~~
2025-09-08T03:14:45,735   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:14:45,735                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:14:45,735   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:14:45,735     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:14:45,736         |                                   ^~~~~~~~
2025-09-08T03:14:45,741   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:45,741     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:45,741         |                             ^~~~~~~~
2025-09-08T03:14:45,741   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:14:45,742     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:14:45,742         |                           ^~~~~~~~
2025-09-08T03:14:45,745   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:45,745     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:45,745         |                             ^~~~~~~~
2025-09-08T03:14:45,746   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:14:45,746   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:14:45,746     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:14:45,746         |                      ^~~~~~~~
2025-09-08T03:14:50,864   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:14:50,864                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:14:50,865                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:14:50,865                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:14:50,865                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:14:50,865                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:14:50,865                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:14:50,865                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T03:14:50,865                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T03:14:50,865                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:55,
2025-09-08T03:14:50,865                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2025-09-08T03:14:50,865   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:14:50,865      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:14:50,866         |                           ^~~~~~~~~~~~~~
2025-09-08T03:14:50,866   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:14:50,867                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:53:
2025-09-08T03:14:50,867   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:14:50,867     117 |     struct unary_function
2025-09-08T03:14:50,867         |            ^~~~~~~~~~~~~~
2025-09-08T03:14:51,199   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:51,199     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:51,199         |                             ^~~~~~~~
2025-09-08T03:14:51,200   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:14:51,200     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:14:51,200         |                                   ^~~~~~~~
2025-09-08T03:14:51,203   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:51,203     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:51,203         |                             ^~~~~~~~
2025-09-08T03:14:51,204   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:14:51,204                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:31:
2025-09-08T03:14:51,204   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:14:51,204     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:14:51,204         |                              ^~~~~~~~
2025-09-08T03:14:51,207   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:51,207     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:51,207         |                             ^~~~~~~~
2025-09-08T03:14:51,207   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:14:51,207   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:14:51,208     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:14:51,208         |                          ^~~~~~~~
2025-09-08T03:14:51,212   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:51,213     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:51,213         |                             ^~~~~~~~
2025-09-08T03:14:51,213   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:14:51,213   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:14:51,213     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:14:51,213         |                           ^~~~~~~~
2025-09-08T03:14:51,216   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:51,216     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:51,216         |                             ^~~~~~~~
2025-09-08T03:14:51,217   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:14:51,217   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:14:51,217     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:14:51,217         |                      ^~~~~~~~
2025-09-08T03:14:57,545   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:14:57,545                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:14:57,545                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:14:57,545                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:14:57,546                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:14:57,546                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:14:57,546                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:14:57,546                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T03:14:57,546                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T03:14:57,546                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2025-09-08T03:14:57,546                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2025-09-08T03:14:57,546   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:14:57,546      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:14:57,546         |                           ^~~~~~~~~~~~~~
2025-09-08T03:14:57,547   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:14:57,547                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2025-09-08T03:14:57,548   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:14:57,548     117 |     struct unary_function
2025-09-08T03:14:57,548         |            ^~~~~~~~~~~~~~
2025-09-08T03:14:57,865   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:57,865     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:57,865         |                             ^~~~~~~~
2025-09-08T03:14:57,865   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:14:57,865     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:14:57,866         |                      ^~~~~~~~
2025-09-08T03:14:57,869   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:57,869     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:57,869         |                             ^~~~~~~~
2025-09-08T03:14:57,869   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:14:57,869                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:33:
2025-09-08T03:14:57,870   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:14:57,870     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:14:57,870         |                              ^~~~~~~~
2025-09-08T03:14:57,872   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:57,873     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:57,873         |                             ^~~~~~~~
2025-09-08T03:14:57,873   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:14:57,873   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:14:57,873     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:14:57,873         |                          ^~~~~~~~
2025-09-08T03:14:57,883   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:57,883     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:57,883         |                             ^~~~~~~~
2025-09-08T03:14:57,883   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:14:57,884                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:14:57,884   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:14:57,884     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:14:57,884         |                                   ^~~~~~~~
2025-09-08T03:14:57,889   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:14:57,889     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:14:57,889         |                             ^~~~~~~~
2025-09-08T03:14:57,890   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:14:57,890     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:14:57,890         |                           ^~~~~~~~
2025-09-08T03:15:03,536   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:15:03,536                    from ./base//sbml/Model.h:409,
2025-09-08T03:15:03,536                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2025-09-08T03:15:03,536   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:03,537      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:03,537         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:03,537   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:03,538                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:15:03,538                    from ./base//sbml/xml/XMLToken.h:45,
2025-09-08T03:15:03,538                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2025-09-08T03:15:03,538   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:03,538     117 |     struct unary_function
2025-09-08T03:15:03,538         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:03,940   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:15:03,941                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:15:03,941                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:45:
2025-09-08T03:15:03,941   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:03,941     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:03,941         |                             ^~~~~~~~
2025-09-08T03:15:03,941   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:15:03,941     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:15:03,942         |                              ^~~~~~~~
2025-09-08T03:15:03,944   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:03,944     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:03,945         |                             ^~~~~~~~
2025-09-08T03:15:03,945   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:15:03,945   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:15:03,945     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:15:03,945         |                          ^~~~~~~~
2025-09-08T03:15:03,955   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:03,955     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:03,955         |                             ^~~~~~~~
2025-09-08T03:15:03,956   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:15:03,956                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:15:03,956   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:15:03,956     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:15:03,956         |                                   ^~~~~~~~
2025-09-08T03:15:03,961   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:03,961     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:03,962         |                             ^~~~~~~~
2025-09-08T03:15:03,962   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:15:03,962     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:15:03,962         |                           ^~~~~~~~
2025-09-08T03:15:03,965   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:03,965     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:03,965         |                             ^~~~~~~~
2025-09-08T03:15:03,965   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:15:03,965   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:15:03,965     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:15:03,966         |                      ^~~~~~~~
2025-09-08T03:15:08,138   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:15:08,138                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:15:08,138                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:15:08,138                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:15:08,138                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:15:08,138                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2025-09-08T03:15:08,139                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2025-09-08T03:15:08,139                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T03:15:08,139                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2025-09-08T03:15:08,139                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T03:15:08,139                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2025-09-08T03:15:08,139   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:08,139      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:08,139         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:08,140   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:08,140                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:15:08,140                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:15:08,140                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:15:08,140                    from ./base//sbml/SBase.h:154,
2025-09-08T03:15:08,140                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T03:15:08,141   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:08,141     117 |     struct unary_function
2025-09-08T03:15:08,141         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:11,860   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:15:11,861                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:15:11,861                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:15:11,861                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2025-09-08T03:15:11,861                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2025-09-08T03:15:11,861   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:11,861      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:11,861         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:11,862   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:11,862                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:67,
2025-09-08T03:15:11,862                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2025-09-08T03:15:11,862                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2025-09-08T03:15:11,862   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:11,862     117 |     struct unary_function
2025-09-08T03:15:11,863         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:12,430   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:15:12,430                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:15:12,430                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T03:15:12,431                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T03:15:12,431                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T03:15:12,431   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:12,431     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:12,431         |                             ^~~~~~~~
2025-09-08T03:15:12,431   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:15:12,431     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:15:12,431         |                              ^~~~~~~~
2025-09-08T03:15:12,434   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:12,434     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:12,434         |                             ^~~~~~~~
2025-09-08T03:15:12,435   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:15:12,435   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:15:12,435     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:15:12,435         |                          ^~~~~~~~
2025-09-08T03:15:12,445   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:12,445     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:12,445         |                             ^~~~~~~~
2025-09-08T03:15:12,445   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:15:12,445                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:15:12,445   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:15:12,446     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:15:12,446         |                                   ^~~~~~~~
2025-09-08T03:15:12,451   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:12,451     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:12,451         |                             ^~~~~~~~
2025-09-08T03:15:12,451   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:15:12,452     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:15:12,452         |                           ^~~~~~~~
2025-09-08T03:15:12,455   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:12,455     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:12,455         |                             ^~~~~~~~
2025-09-08T03:15:12,456   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:15:12,456   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:15:12,456     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:15:12,456         |                      ^~~~~~~~
2025-09-08T03:15:12,478   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67,
2025-09-08T03:15:12,478                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T03:15:12,478   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:12,478     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T03:15:12,478         |                        ^~~~~~~~
2025-09-08T03:15:12,478   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T03:15:12,478   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T03:15:12,479     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T03:15:12,479         |                        ^~~~~~~~
2025-09-08T03:15:12,482   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:12,482     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:12,482         |                             ^~~~~~~~
2025-09-08T03:15:12,483   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T03:15:12,483   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T03:15:12,483     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T03:15:12,483         |                            ^~~~~~~~
2025-09-08T03:15:12,489   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:12,489     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:12,489         |                             ^~~~~~~~
2025-09-08T03:15:12,489   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T03:15:12,489   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T03:15:12,490     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T03:15:12,490         |                          ^~~~~~~~
2025-09-08T03:15:14,698   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintGeneralGlyphLayoutGGNoDuplicateReferences::check_(const Model&, const GeneralGlyph&)’:
2025-09-08T03:15:14,698   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:452:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T03:15:14,698     452 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2025-09-08T03:15:14,698         |       ~~~~~~~~~~~~~~~~^~
2025-09-08T03:15:14,699   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:438:11: note: ‘obj’ was declared here
2025-09-08T03:15:14,699     438 |   SBase * obj;
2025-09-08T03:15:14,699         |           ^~~
2025-09-08T03:15:15,010   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintReferenceGlyphLayoutREFGNoDuplicateReferences::check_(const Model&, const ReferenceGlyph&)’:
2025-09-08T03:15:15,010   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:807:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T03:15:15,010     807 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2025-09-08T03:15:15,010         |       ~~~~~~~~~~~~~~~~^~
2025-09-08T03:15:15,011   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:793:11: note: ‘obj’ was declared here
2025-09-08T03:15:15,011     793 |   SBase * obj;
2025-09-08T03:15:15,011         |           ^~~
2025-09-08T03:15:15,099   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintTextGlyphLayoutTGNoDuplicateReferences::check_(const Model&, const TextGlyph&)’:
2025-09-08T03:15:15,100   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:545:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T03:15:15,100     545 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2025-09-08T03:15:15,100         |       ~~~~~~~~~~~~~~~~^~
2025-09-08T03:15:15,100   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:531:11: note: ‘obj’ was declared here
2025-09-08T03:15:15,100     531 |   SBase * obj;
2025-09-08T03:15:15,100         |           ^~~
2025-09-08T03:15:15,189   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintSpeciesReferenceGlyphLayoutSRGNoDuplicateReferences::check_(const Model&, const SpeciesReferenceGlyph&)’:
2025-09-08T03:15:15,189   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:678:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2025-09-08T03:15:15,189     678 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2025-09-08T03:15:15,189         |       ~~~~~~~~~~~~~~~~^~
2025-09-08T03:15:15,190   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:664:11: note: ‘obj’ was declared here
2025-09-08T03:15:15,190     664 |   SBase * obj;
2025-09-08T03:15:15,190         |           ^~~
2025-09-08T03:15:19,185   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:15:19,185                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:15:19,185                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:15:19,185                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2025-09-08T03:15:19,185                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2025-09-08T03:15:19,186   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:19,186      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:19,186         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:19,187   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:19,187                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:67,
2025-09-08T03:15:19,187                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2025-09-08T03:15:19,187                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2025-09-08T03:15:19,187   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:19,187     117 |     struct unary_function
2025-09-08T03:15:19,187         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:22,681   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:15:22,681                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:15:22,681                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:15:22,681                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2025-09-08T03:15:22,681   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:22,681      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:22,681         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:22,682   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:22,682                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:15:22,682   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:22,683     117 |     struct unary_function
2025-09-08T03:15:22,683         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:23,248   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:15:23,248                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:15:23,248                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T03:15:23,248                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T03:15:23,249                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:35:
2025-09-08T03:15:23,249   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:23,249     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:23,249         |                             ^~~~~~~~
2025-09-08T03:15:23,249   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:15:23,249     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:15:23,249         |                              ^~~~~~~~
2025-09-08T03:15:23,252   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:23,252     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:23,252         |                             ^~~~~~~~
2025-09-08T03:15:23,253   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:15:23,253   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:15:23,253     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:15:23,253         |                          ^~~~~~~~
2025-09-08T03:15:23,263   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:23,263     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:23,263         |                             ^~~~~~~~
2025-09-08T03:15:23,263   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:15:23,263                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:15:23,264   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:15:23,264     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:15:23,264         |                                   ^~~~~~~~
2025-09-08T03:15:23,269   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:23,269     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:23,269         |                             ^~~~~~~~
2025-09-08T03:15:23,270   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:15:23,270     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:15:23,270         |                           ^~~~~~~~
2025-09-08T03:15:23,273   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:23,273     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:23,274         |                             ^~~~~~~~
2025-09-08T03:15:23,274   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:15:23,274   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:15:23,274     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:15:23,274         |                      ^~~~~~~~
2025-09-08T03:15:23,296   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67,
2025-09-08T03:15:23,296                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T03:15:23,296   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:23,296     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T03:15:23,296         |                        ^~~~~~~~
2025-09-08T03:15:23,297   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T03:15:23,297   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T03:15:23,297     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T03:15:23,297         |                        ^~~~~~~~
2025-09-08T03:15:23,300   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:23,301     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:23,301         |                             ^~~~~~~~
2025-09-08T03:15:23,301   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T03:15:23,301   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T03:15:23,301     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T03:15:23,301         |                            ^~~~~~~~
2025-09-08T03:15:23,307   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:23,307     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:23,307         |                             ^~~~~~~~
2025-09-08T03:15:23,308   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T03:15:23,308   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T03:15:23,308     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T03:15:23,308         |                          ^~~~~~~~
2025-09-08T03:15:23,310   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:23,310      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T03:15:23,310         |                       ^~~~~~~~~~~~~~
2025-09-08T03:15:23,311   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:23,311     117 |     struct unary_function
2025-09-08T03:15:23,311         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:23,553   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T03:15:23,553   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:24: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T03:15:23,553     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T03:15:23,554         |                        ^
2025-09-08T03:15:23,554   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:41: note: ‘x’ declared here
2025-09-08T03:15:23,554     417 |         virtual bool visit(const SBase &x)
2025-09-08T03:15:23,554         |                            ~~~~~~~~~~~~~^
2025-09-08T03:15:23,576   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T03:15:23,577   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T03:15:23,577     550 |   if (&d == NULL) return 0;
2025-09-08T03:15:23,577         |          ^
2025-09-08T03:15:23,577   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2025-09-08T03:15:23,577     548 | LayoutValidator::validate (const SBMLDocument& d)
2025-09-08T03:15:23,577         |                            ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T03:15:23,582   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T03:15:23,582   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T03:15:23,582     592 |   if (&filename == NULL) return 0;
2025-09-08T03:15:23,582         |                 ^
2025-09-08T03:15:23,583   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2025-09-08T03:15:23,583     590 | LayoutValidator::validate (const std::string& filename)
2025-09-08T03:15:23,583         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:15:24,536   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T03:15:24,536   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:15:24,536     550 |   if (&d == NULL) return 0;
2025-09-08T03:15:24,536         |   ^~
2025-09-08T03:15:24,560   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T03:15:24,561   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:32: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:15:24,561     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T03:15:24,561         |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:15:24,580   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T03:15:24,580   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:15:24,580     592 |   if (&filename == NULL) return 0;
2025-09-08T03:15:24,580         |   ^~
2025-09-08T03:15:29,427   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:15:29,427                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:15:29,428                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:15:29,428                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2025-09-08T03:15:29,428   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:29,428      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:29,428         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:29,429   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:29,429                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:15:29,429   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:29,429     117 |     struct unary_function
2025-09-08T03:15:29,429         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:29,998   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:15:29,999                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:15:29,999                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T03:15:29,999                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T03:15:29,999                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T03:15:29,999   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:29,999     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:29,999         |                             ^~~~~~~~
2025-09-08T03:15:30,000   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:15:30,000     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:15:30,000         |                              ^~~~~~~~
2025-09-08T03:15:30,003   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:30,003     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:30,003         |                             ^~~~~~~~
2025-09-08T03:15:30,003   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:15:30,003   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:15:30,003     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:15:30,003         |                          ^~~~~~~~
2025-09-08T03:15:30,013   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:30,013     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:30,013         |                             ^~~~~~~~
2025-09-08T03:15:30,014   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:15:30,014                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:15:30,014   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:15:30,014     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:15:30,014         |                                   ^~~~~~~~
2025-09-08T03:15:30,019   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:30,019     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:30,019         |                             ^~~~~~~~
2025-09-08T03:15:30,020   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:15:30,020     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:15:30,020         |                           ^~~~~~~~
2025-09-08T03:15:30,023   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:30,024     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:30,024         |                             ^~~~~~~~
2025-09-08T03:15:30,024   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:15:30,024   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:15:30,024     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:15:30,024         |                      ^~~~~~~~
2025-09-08T03:15:30,046   In file included from ./base//sbml/packages/layout/sbml/Curve.h:67,
2025-09-08T03:15:30,046                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T03:15:30,046   ./base//sbml/packages/layout/sbml/LineSegment.h:123:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:30,046     123 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T03:15:30,046         |                        ^~~~~~~~
2025-09-08T03:15:30,047   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T03:15:30,047   ./base//sbml/packages/layout/sbml/CubicBezier.h:155:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T03:15:30,047     155 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T03:15:30,047         |                        ^~~~~~~~
2025-09-08T03:15:30,050   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:30,051     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:30,051         |                             ^~~~~~~~
2025-09-08T03:15:30,051   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T03:15:30,051   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T03:15:30,051     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T03:15:30,051         |                            ^~~~~~~~
2025-09-08T03:15:30,057   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:30,057     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:30,057         |                             ^~~~~~~~
2025-09-08T03:15:30,058   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T03:15:30,058   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T03:15:30,058     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T03:15:30,058         |                          ^~~~~~~~
2025-09-08T03:15:33,188   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:15:33,189                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:15:33,189                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:15:33,189                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2025-09-08T03:15:33,189   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:33,189      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:33,189         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:33,190   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:33,190                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:15:33,190   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:33,190     117 |     struct unary_function
2025-09-08T03:15:33,190         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:36,721   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:15:36,722                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:15:36,722                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:15:36,722                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2025-09-08T03:15:36,722                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2025-09-08T03:15:36,722   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:36,722      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:36,722         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:36,723   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:36,723                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2025-09-08T03:15:36,723   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:36,723     117 |     struct unary_function
2025-09-08T03:15:36,723         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:37,218   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:15:37,218                    from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:15:37,218                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:55,
2025-09-08T03:15:37,218                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:36:
2025-09-08T03:15:37,218   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:37,218     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:37,218         |                             ^~~~~~~~
2025-09-08T03:15:37,219   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:15:37,219     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:15:37,219         |                              ^~~~~~~~
2025-09-08T03:15:37,222   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:37,222     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:37,222         |                             ^~~~~~~~
2025-09-08T03:15:37,222   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:15:37,222   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:112:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:15:37,223     112 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:15:37,223         |                          ^~~~~~~~
2025-09-08T03:15:37,232   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:37,232     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:37,232         |                             ^~~~~~~~
2025-09-08T03:15:37,233   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:63,
2025-09-08T03:15:37,233                    from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:15:37,233   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:125:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:15:37,233     125 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:15:37,233         |                                   ^~~~~~~~
2025-09-08T03:15:37,238   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:37,239     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:37,239         |                             ^~~~~~~~
2025-09-08T03:15:37,239   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:296:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:15:37,239     296 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:15:37,239         |                           ^~~~~~~~
2025-09-08T03:15:37,243   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:37,243     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:37,243         |                             ^~~~~~~~
2025-09-08T03:15:37,243   In file included from ./base//sbml/packages/layout/sbml/Layout.h:63:
2025-09-08T03:15:37,243   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:15:37,244     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:15:37,244         |                      ^~~~~~~~
2025-09-08T03:15:37,267   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:37,267     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:37,267         |                             ^~~~~~~~
2025-09-08T03:15:37,267   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:57,
2025-09-08T03:15:37,267                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:38:
2025-09-08T03:15:37,267   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:118:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T03:15:37,268     118 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T03:15:37,268         |                            ^~~~~~~~
2025-09-08T03:15:37,273   ./base//sbml/packages/layout/sbml/GraphicalObject.h:162:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:15:37,273     162 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:15:37,274         |                             ^~~~~~~~
2025-09-08T03:15:37,274   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:291:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T03:15:37,274     291 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T03:15:37,274         |                          ^~~~~~~~
2025-09-08T03:15:41,970   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:15:41,970                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:15:41,970                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:15:41,970                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2025-09-08T03:15:41,971                    from ./base//sbml/extension/SBMLExtension.h:521,
2025-09-08T03:15:41,971                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2025-09-08T03:15:41,971                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2025-09-08T03:15:41,971   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:41,971      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:41,971         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:41,972   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:41,972                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:15:41,972                    from ./base//sbml/SBMLError.h:447,
2025-09-08T03:15:41,972                    from ./base//sbml/SBMLDocument.h:289:
2025-09-08T03:15:41,972   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:41,972     117 |     struct unary_function
2025-09-08T03:15:41,972         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:46,815   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:15:46,815                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:15:46,816                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:15:46,816                    from ./base//sbml/extension/SBasePlugin.h:254,
2025-09-08T03:15:46,816                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:53,
2025-09-08T03:15:46,816                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2025-09-08T03:15:46,816   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:46,816      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:46,816         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:46,817   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:46,817                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:15:46,817                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:15:46,817                    from ./base//sbml/extension/SBasePlugin.h:252:
2025-09-08T03:15:46,817   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:46,817     117 |     struct unary_function
2025-09-08T03:15:46,818         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:51,805   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:15:51,806                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:15:51,806                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:15:51,806                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2025-09-08T03:15:51,806                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:59,
2025-09-08T03:15:51,806                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2025-09-08T03:15:51,806   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:51,806      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:51,806         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:51,807   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:51,807                    from ./base//sbml/xml/XMLError.h:556,
2025-09-08T03:15:51,807                    from ./base//sbml/SBMLErrorLog.h:103,
2025-09-08T03:15:51,807                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2025-09-08T03:15:51,807   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:51,807     117 |     struct unary_function
2025-09-08T03:15:51,808         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:55,731   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2025-09-08T03:15:55,732                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2025-09-08T03:15:55,732   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:15:55,732      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:15:55,732         |                           ^~~~~~~~~~~~~~
2025-09-08T03:15:55,733   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:15:55,733                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2025-09-08T03:15:55,733   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:15:55,733     117 |     struct unary_function
2025-09-08T03:15:55,733         |            ^~~~~~~~~~~~~~
2025-09-08T03:15:56,320   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T03:15:56,321   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:15:56,321      81 |   if (&orig == NULL)
2025-09-08T03:15:56,321         |             ^
2025-09-08T03:15:56,321   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2025-09-08T03:15:56,321      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2025-09-08T03:15:56,321         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:15:56,323   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T03:15:56,323   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:15:56,323      99 |   if (&rhs == NULL)
2025-09-08T03:15:56,323         |            ^
2025-09-08T03:15:56,323   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2025-09-08T03:15:56,324      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2025-09-08T03:15:56,324         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:15:56,770   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T03:15:56,770   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:15:56,770      81 |   if (&orig == NULL)
2025-09-08T03:15:56,770         |   ^~
2025-09-08T03:15:56,771   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T03:15:56,771   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:15:56,771      99 |   if (&rhs == NULL)
2025-09-08T03:15:56,771         |   ^~
2025-09-08T03:16:00,728   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:59,
2025-09-08T03:16:00,728                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2025-09-08T03:16:00,729   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:00,729      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:00,729         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:00,730   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:00,730                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:55:
2025-09-08T03:16:00,730   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:00,730     117 |     struct unary_function
2025-09-08T03:16:00,730         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:01,323   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T03:16:01,323   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:16:01,324      88 |   if (&orig == NULL)
2025-09-08T03:16:01,324         |             ^
2025-09-08T03:16:01,324   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2025-09-08T03:16:01,324      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2025-09-08T03:16:01,324         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:16:01,326   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T03:16:01,326   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:16:01,326     114 |   if (&rhs == NULL)
2025-09-08T03:16:01,326         |            ^
2025-09-08T03:16:01,326   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2025-09-08T03:16:01,327     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2025-09-08T03:16:01,327         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:16:01,349   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T03:16:01,349   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:16:01,349     651 |   if (&orig == NULL)
2025-09-08T03:16:01,349         |             ^
2025-09-08T03:16:01,349   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:648:70: note: ‘orig’ declared here
2025-09-08T03:16:01,349     648 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2025-09-08T03:16:01,350         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:16:01,351   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T03:16:01,351   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:16:01,351     673 |   if (&rhs == NULL)
2025-09-08T03:16:01,351         |            ^
2025-09-08T03:16:01,352   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:671:59: note: ‘rhs’ declared here
2025-09-08T03:16:01,352     671 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2025-09-08T03:16:01,352         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:16:01,872   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T03:16:01,872   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:01,872      88 |   if (&orig == NULL)
2025-09-08T03:16:01,872         |   ^~
2025-09-08T03:16:01,873   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T03:16:01,873   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:01,873     114 |   if (&rhs == NULL)
2025-09-08T03:16:01,873         |   ^~
2025-09-08T03:16:01,874   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T03:16:01,874   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:01,874     673 |   if (&rhs == NULL)
2025-09-08T03:16:01,874         |   ^~
2025-09-08T03:16:01,885   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T03:16:01,885   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:01,885     651 |   if (&orig == NULL)
2025-09-08T03:16:01,885         |   ^~
2025-09-08T03:16:06,952   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2025-09-08T03:16:06,953                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2025-09-08T03:16:06,953   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:06,953      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:06,953         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:06,954   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:06,954                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2025-09-08T03:16:06,954   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:06,954     117 |     struct unary_function
2025-09-08T03:16:06,954         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:07,549   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T03:16:07,549   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:16:07,549      91 |   if (&orig == NULL)
2025-09-08T03:16:07,549         |             ^
2025-09-08T03:16:07,550   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2025-09-08T03:16:07,550      88 | Input::Input (const Input& orig)
2025-09-08T03:16:07,550         |               ~~~~~~~~~~~~~^~~~
2025-09-08T03:16:07,552   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T03:16:07,552   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:16:07,552     114 |   if (&rhs == NULL)
2025-09-08T03:16:07,552         |            ^
2025-09-08T03:16:07,553   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2025-09-08T03:16:07,553     112 | Input::operator=(const Input& rhs)
2025-09-08T03:16:07,553         |                  ~~~~~~~~~~~~~^~~
2025-09-08T03:16:07,558   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T03:16:07,558   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T03:16:07,558     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T03:16:07,558         |                             ^
2025-09-08T03:16:07,558   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2025-09-08T03:16:07,558     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T03:16:07,558         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T03:16:07,560   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T03:16:07,560   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:16:07,560     328 |   if (&(name) == NULL)
2025-09-08T03:16:07,560         |               ^
2025-09-08T03:16:07,560   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2025-09-08T03:16:07,560     326 | Input::setName(const std::string& name)
2025-09-08T03:16:07,561         |                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:16:07,594   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2025-09-08T03:16:07,594   ./base/sbml/packages/qual/sbml/Input.cpp:956:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:07,595     956 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T03:16:07,595         |                             ^~~~~~~~~~~~~~
2025-09-08T03:16:07,595   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:07,595     117 |     struct unary_function
2025-09-08T03:16:07,595         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:08,131   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T03:16:08,131   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:08,131     328 |   if (&(name) == NULL)
2025-09-08T03:16:08,132         |   ^~
2025-09-08T03:16:08,148   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T03:16:08,148   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:08,148      91 |   if (&orig == NULL)
2025-09-08T03:16:08,148         |   ^~
2025-09-08T03:16:08,149   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T03:16:08,149   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:08,149     114 |   if (&rhs == NULL)
2025-09-08T03:16:08,149         |   ^~
2025-09-08T03:16:08,150   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T03:16:08,150   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:08,150     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T03:16:08,150         |   ^~
2025-09-08T03:16:14,854   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2025-09-08T03:16:14,854                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2025-09-08T03:16:14,854   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:14,854      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:14,854         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:14,855   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:14,855                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2025-09-08T03:16:14,855   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:14,856     117 |     struct unary_function
2025-09-08T03:16:14,856         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:15,457   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T03:16:15,457   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:16:15,457      89 |   if (&orig == NULL)
2025-09-08T03:16:15,457         |             ^
2025-09-08T03:16:15,457   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2025-09-08T03:16:15,458      86 | Output::Output (const Output& orig)
2025-09-08T03:16:15,458         |                 ~~~~~~~~~~~~~~^~~~
2025-09-08T03:16:15,460   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T03:16:15,460   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:16:15,460     111 |   if (&rhs == NULL)
2025-09-08T03:16:15,460         |            ^
2025-09-08T03:16:15,460   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2025-09-08T03:16:15,460     109 | Output::operator=(const Output& rhs)
2025-09-08T03:16:15,461         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T03:16:15,465   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T03:16:15,465   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T03:16:15,465     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T03:16:15,465         |                             ^
2025-09-08T03:16:15,465   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2025-09-08T03:16:15,465     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T03:16:15,466         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T03:16:15,467   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T03:16:15,467   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:16:15,467     304 |   if (&(name) == NULL)
2025-09-08T03:16:15,467         |               ^
2025-09-08T03:16:15,467   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2025-09-08T03:16:15,467     302 | Output::setName(const std::string& name)
2025-09-08T03:16:15,468         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:16:15,498   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2025-09-08T03:16:15,498   ./base/sbml/packages/qual/sbml/Output.cpp:873:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:15,498     873 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T03:16:15,499         |                             ^~~~~~~~~~~~~~
2025-09-08T03:16:15,499   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:15,499     117 |     struct unary_function
2025-09-08T03:16:15,499         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:16,015   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T03:16:16,015   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:16,015     304 |   if (&(name) == NULL)
2025-09-08T03:16:16,015         |   ^~
2025-09-08T03:16:16,031   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T03:16:16,031   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:16,031      89 |   if (&orig == NULL)
2025-09-08T03:16:16,031         |   ^~
2025-09-08T03:16:16,032   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T03:16:16,032   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:16,032     111 |   if (&rhs == NULL)
2025-09-08T03:16:16,032         |   ^~
2025-09-08T03:16:16,033   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T03:16:16,033   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:16,033     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T03:16:16,033         |   ^~
2025-09-08T03:16:22,450   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:70,
2025-09-08T03:16:22,451                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2025-09-08T03:16:22,451   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:22,451      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:22,451         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:22,452   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:22,452                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:66:
2025-09-08T03:16:22,452   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:22,452     117 |     struct unary_function
2025-09-08T03:16:22,452         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:23,046   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T03:16:23,047   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:16:23,047      95 |   if (&orig == NULL)
2025-09-08T03:16:23,047         |             ^
2025-09-08T03:16:23,047   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2025-09-08T03:16:23,047      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2025-09-08T03:16:23,047         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:16:23,049   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T03:16:23,050   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:16:23,050     120 |   if (&rhs == NULL)
2025-09-08T03:16:23,050         |            ^
2025-09-08T03:16:23,050   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2025-09-08T03:16:23,050     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2025-09-08T03:16:23,050         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:16:23,054   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T03:16:23,054   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2025-09-08T03:16:23,054     295 |   if (&(compartment) == NULL)
2025-09-08T03:16:23,054         |                      ^
2025-09-08T03:16:23,055   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2025-09-08T03:16:23,055     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2025-09-08T03:16:23,055         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T03:16:23,056   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2025-09-08T03:16:23,056   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:16:23,056     329 |   if (&(name) == NULL)
2025-09-08T03:16:23,056         |               ^
2025-09-08T03:16:23,057   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2025-09-08T03:16:23,057     327 | QualitativeSpecies::setName(const std::string& name)
2025-09-08T03:16:23,057         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:16:23,609   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:23,610     329 |   if (&(name) == NULL)
2025-09-08T03:16:23,610         |   ^~
2025-09-08T03:16:23,624   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T03:16:23,624   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:23,624      95 |   if (&orig == NULL)
2025-09-08T03:16:23,624         |   ^~
2025-09-08T03:16:23,625   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T03:16:23,625   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:23,625     120 |   if (&rhs == NULL)
2025-09-08T03:16:23,625         |   ^~
2025-09-08T03:16:23,626   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T03:16:23,626   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:23,626     295 |   if (&(compartment) == NULL)
2025-09-08T03:16:23,626         |   ^~
2025-09-08T03:16:30,585   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2025-09-08T03:16:30,585                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2025-09-08T03:16:30,585   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:30,586      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:30,586         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:30,587   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:30,587                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2025-09-08T03:16:30,587   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:30,587     117 |     struct unary_function
2025-09-08T03:16:30,587         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:31,204   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T03:16:31,204   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:16:31,204      94 |   if (&orig == NULL)
2025-09-08T03:16:31,204         |             ^
2025-09-08T03:16:31,204   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2025-09-08T03:16:31,205      91 | Transition::Transition (const Transition& orig)
2025-09-08T03:16:31,205         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:16:31,207   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T03:16:31,207   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:16:31,207     118 |   if (&rhs == NULL)
2025-09-08T03:16:31,208         |            ^
2025-09-08T03:16:31,208   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2025-09-08T03:16:31,208     116 | Transition::operator=(const Transition& rhs)
2025-09-08T03:16:31,208         |                       ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:16:31,215   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2025-09-08T03:16:31,215   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:16:31,216     257 |   if (&(name) == NULL)
2025-09-08T03:16:31,216         |               ^
2025-09-08T03:16:31,216   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2025-09-08T03:16:31,216     255 | Transition::setName(const std::string& name)
2025-09-08T03:16:31,216         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:16:31,797   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:31,798     257 |   if (&(name) == NULL)
2025-09-08T03:16:31,798         |   ^~
2025-09-08T03:16:31,814   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T03:16:31,814   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:31,814     118 |   if (&rhs == NULL)
2025-09-08T03:16:31,814         |   ^~
2025-09-08T03:16:31,829   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T03:16:31,830   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:31,830      94 |   if (&orig == NULL)
2025-09-08T03:16:31,830         |   ^~
2025-09-08T03:16:38,487   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:16:38,487                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:16:38,487                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:16:38,487                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2025-09-08T03:16:38,488                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2025-09-08T03:16:38,488   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:38,488      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:38,488         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:38,489   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:38,489                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2025-09-08T03:16:38,489                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2025-09-08T03:16:38,489                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2025-09-08T03:16:38,489   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:38,489     117 |     struct unary_function
2025-09-08T03:16:38,489         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:43,415   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:16:43,415                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:16:43,416                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:16:43,416                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2025-09-08T03:16:43,416                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2025-09-08T03:16:43,416   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:43,416      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:43,416         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:43,417   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:43,417                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2025-09-08T03:16:43,417                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2025-09-08T03:16:43,417                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2025-09-08T03:16:43,417   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:43,417     117 |     struct unary_function
2025-09-08T03:16:43,417         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:47,386   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:16:47,386                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:16:47,386                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:16:47,386                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2025-09-08T03:16:47,387                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2025-09-08T03:16:47,387   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:47,387      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:47,387         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:47,388   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:47,388                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2025-09-08T03:16:47,388                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2025-09-08T03:16:47,388                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2025-09-08T03:16:47,388   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:47,388     117 |     struct unary_function
2025-09-08T03:16:47,388         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:51,077   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:16:51,077                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:16:51,077                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:16:51,078                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2025-09-08T03:16:51,078   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:51,078      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:51,078         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:51,079   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:51,079                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:16:51,079   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:51,079     117 |     struct unary_function
2025-09-08T03:16:51,079         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:51,645   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:51,645      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T03:16:51,645         |                       ^~~~~~~~~~~~~~
2025-09-08T03:16:51,645   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:51,645     117 |     struct unary_function
2025-09-08T03:16:51,645         |            ^~~~~~~~~~~~~~
2025-09-08T03:16:51,794   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T03:16:51,794   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T03:16:51,794     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T03:16:51,794         |           ^
2025-09-08T03:16:51,795   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2025-09-08T03:16:51,795     313 |   virtual bool visit (const SBase &x)
2025-09-08T03:16:51,795         |                       ~~~~~~~~~~~~~^
2025-09-08T03:16:51,822   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T03:16:51,822   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T03:16:51,823     419 |   if (&d == NULL) return 0;
2025-09-08T03:16:51,823         |          ^
2025-09-08T03:16:51,823   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2025-09-08T03:16:51,823     417 | QualValidator::validate (const SBMLDocument& d)
2025-09-08T03:16:51,823         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T03:16:51,825   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T03:16:51,825   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T03:16:51,825     449 |   if (&filename == NULL) return 0;
2025-09-08T03:16:51,825         |                 ^
2025-09-08T03:16:51,826   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2025-09-08T03:16:51,826     447 | QualValidator::validate (const std::string& filename)
2025-09-08T03:16:51,826         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:16:52,569   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T03:16:52,569   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:52,569     419 |   if (&d == NULL) return 0;
2025-09-08T03:16:52,569         |   ^~
2025-09-08T03:16:52,583   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T03:16:52,583   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:52,583     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T03:16:52,583         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:16:52,596   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T03:16:52,596   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:16:52,596     449 |   if (&filename == NULL) return 0;
2025-09-08T03:16:52,596         |   ^~
2025-09-08T03:16:56,800   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:16:56,800                    from ./base//sbml/Model.h:409,
2025-09-08T03:16:56,800                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2025-09-08T03:16:56,800   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:16:56,800      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:16:56,800         |                           ^~~~~~~~~~~~~~
2025-09-08T03:16:56,801   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:16:56,801                    from ./base//sbml/Model.h:407:
2025-09-08T03:16:56,801   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:16:56,801     117 |     struct unary_function
2025-09-08T03:16:56,801         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:00,880   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:17:00,880                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:17:00,880                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:17:00,880                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2025-09-08T03:17:00,880                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2025-09-08T03:17:00,880   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:00,880      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:00,880         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:00,881   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:00,881                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2025-09-08T03:17:00,881   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:00,882     117 |     struct unary_function
2025-09-08T03:17:00,882         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:01,450   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:17:01,450   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:17:01,450      97 |   if (&(node) == NULL)
2025-09-08T03:17:01,450         |               ^
2025-09-08T03:17:01,451   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2025-09-08T03:17:01,451      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:17:01,451         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:17:01,891   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:17:01,891      97 |   if (&(node) == NULL)
2025-09-08T03:17:01,891         |   ^~
2025-09-08T03:17:04,812   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:17:04,812                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:17:04,812                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:17:04,813                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2025-09-08T03:17:04,813   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:04,813      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:04,813         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:04,813   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:04,813                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:17:04,813   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:04,813     117 |     struct unary_function
2025-09-08T03:17:04,814         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:08,450   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:17:08,450                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:17:08,450                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:17:08,451                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2025-09-08T03:17:08,451   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:08,451      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:08,451         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:08,452   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:08,452                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:17:08,452   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:08,452     117 |     struct unary_function
2025-09-08T03:17:08,452         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:12,355   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:17:12,355                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:17:12,355                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:17:12,355                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2025-09-08T03:17:12,355   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:12,355      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:12,355         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:12,356   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:12,356                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:17:12,356   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:12,356     117 |     struct unary_function
2025-09-08T03:17:12,356         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:16,025   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:17:16,025                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:17:16,025                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:17:16,025                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2025-09-08T03:17:16,025                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2025-09-08T03:17:16,025   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:16,026      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:16,026         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:16,026   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:16,026                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2025-09-08T03:17:16,027   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:16,027     117 |     struct unary_function
2025-09-08T03:17:16,027         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:21,044   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:17:21,045                    from ./base//sbml/Model.h:409,
2025-09-08T03:17:21,045                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2025-09-08T03:17:21,045   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:21,045      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:21,045         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:21,046   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:21,046                    from ./base//sbml/Model.h:407:
2025-09-08T03:17:21,046   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:21,046     117 |     struct unary_function
2025-09-08T03:17:21,046         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:24,974   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:17:24,975                    from ./base//sbml/Model.h:409,
2025-09-08T03:17:24,975                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2025-09-08T03:17:24,975   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:24,975      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:24,975         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:24,976   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:24,976                    from ./base//sbml/Model.h:407:
2025-09-08T03:17:24,976   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:24,976     117 |     struct unary_function
2025-09-08T03:17:24,976         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:29,343   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:17:29,343                    from ./base//sbml/Model.h:409,
2025-09-08T03:17:29,343                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2025-09-08T03:17:29,343   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:29,344      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:29,344         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:29,345   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:29,345                    from ./base//sbml/Model.h:407:
2025-09-08T03:17:29,345   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:29,345     117 |     struct unary_function
2025-09-08T03:17:29,345         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:29,719   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T03:17:29,719   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:17:29,719      74 |   if (&orig == NULL)
2025-09-08T03:17:29,719         |             ^
2025-09-08T03:17:29,719   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2025-09-08T03:17:29,719      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2025-09-08T03:17:29,719         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:17:29,722   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T03:17:29,723   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:17:29,723     138 |   if (&rhs == NULL)
2025-09-08T03:17:29,723         |            ^
2025-09-08T03:17:29,723   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2025-09-08T03:17:29,723     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2025-09-08T03:17:29,723         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:17:30,158   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T03:17:30,159   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:17:30,159      74 |   if (&orig == NULL)
2025-09-08T03:17:30,159         |   ^~
2025-09-08T03:17:30,160   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T03:17:30,160   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:17:30,160     138 |   if (&rhs == NULL)
2025-09-08T03:17:30,160         |   ^~
2025-09-08T03:17:34,034   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:17:34,034                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:17:34,034                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2025-09-08T03:17:34,034   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:34,034      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:34,035         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:34,035   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:34,036                    from ./base//sbml/UnitDefinition.h:277:
2025-09-08T03:17:34,036   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:34,036     117 |     struct unary_function
2025-09-08T03:17:34,036         |            ^~~~~~~~~~~~~~
2025-09-08T03:17:46,187   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T03:17:46,188   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2025-09-08T03:17:46,188      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T03:17:46,188         |                       ^
2025-09-08T03:17:46,188   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2025-09-08T03:17:46,188      48 | IdList::IdList(const std::string& commaSeparated)
2025-09-08T03:17:46,189         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T03:17:46,438   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T03:17:46,438   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:17:46,438      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T03:17:46,439         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T03:17:56,575   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:17:56,575                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:17:56,575                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2025-09-08T03:17:56,575   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:17:56,576      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:17:56,576         |                           ^~~~~~~~~~~~~~
2025-09-08T03:17:56,576   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:17:56,577                    from ./base//sbml/UnitDefinition.h:277:
2025-09-08T03:17:56,577   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:17:56,577     117 |     struct unary_function
2025-09-08T03:17:56,577         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:06,529   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:18:06,529                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:18:06,529                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2025-09-08T03:18:06,529   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:06,529      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:06,530         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:06,530   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:06,530                    from ./base//sbml/UnitDefinition.h:277:
2025-09-08T03:18:06,531   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:06,531     117 |     struct unary_function
2025-09-08T03:18:06,531         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:10,923   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:18:10,924                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:18:10,924                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2025-09-08T03:18:10,924   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:10,924      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:10,924         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:10,925   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:10,925                    from ./base//sbml/UnitDefinition.h:277:
2025-09-08T03:18:10,925   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:10,925     117 |     struct unary_function
2025-09-08T03:18:10,925         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:17,677   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:18:17,677                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:18:17,677                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2025-09-08T03:18:17,677                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2025-09-08T03:18:17,677   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:17,677      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:17,677         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:17,678   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:17,678                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T03:18:17,678                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2025-09-08T03:18:17,678                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2025-09-08T03:18:17,678   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:17,679     117 |     struct unary_function
2025-09-08T03:18:17,679         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:22,980   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:18:22,980                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:18:22,980                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2025-09-08T03:18:22,980                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2025-09-08T03:18:22,980   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:22,980      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:22,980         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:22,981   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:22,981                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T03:18:22,981                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2025-09-08T03:18:22,982                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2025-09-08T03:18:22,982   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:22,982     117 |     struct unary_function
2025-09-08T03:18:22,982         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:28,644   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:18:28,644                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:18:28,644                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2025-09-08T03:18:28,644                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2025-09-08T03:18:28,644   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:28,645      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:28,645         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:28,645   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:28,646                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T03:18:28,646                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2025-09-08T03:18:28,646                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2025-09-08T03:18:28,646   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:28,646     117 |     struct unary_function
2025-09-08T03:18:28,646         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:34,006   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:18:34,006                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:18:34,006                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2025-09-08T03:18:34,006                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2025-09-08T03:18:34,006   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:34,006      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:34,006         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:34,007   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:34,007                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T03:18:34,008                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2025-09-08T03:18:34,008                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2025-09-08T03:18:34,008   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:34,008     117 |     struct unary_function
2025-09-08T03:18:34,008         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:39,136   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:18:39,136                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:18:39,136                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2025-09-08T03:18:39,137                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2025-09-08T03:18:39,137   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:39,137      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:39,137         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:39,138   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:39,138                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T03:18:39,138                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2025-09-08T03:18:39,138                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2025-09-08T03:18:39,138   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:39,138     117 |     struct unary_function
2025-09-08T03:18:39,138         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:44,192   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:18:44,192                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:18:44,192                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:18:44,192                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2025-09-08T03:18:44,193                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2025-09-08T03:18:44,193   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:44,193      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:44,193         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:44,193   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:44,193                    from ./base//sbml/validator/Validator.h:70,
2025-09-08T03:18:44,193                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2025-09-08T03:18:44,194                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2025-09-08T03:18:44,194   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:44,194     117 |     struct unary_function
2025-09-08T03:18:44,194         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:48,020   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:18:48,020                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:18:48,020                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2025-09-08T03:18:48,020   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:48,020      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:48,021         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:48,021   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:48,021                    from ./base//sbml/UnitDefinition.h:277:
2025-09-08T03:18:48,022   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:48,022     117 |     struct unary_function
2025-09-08T03:18:48,022         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:51,595   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:18:51,595                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:18:51,595                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2025-09-08T03:18:51,595   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:51,596      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:51,596         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:51,596   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:51,597                    from ./base//sbml/UnitDefinition.h:277:
2025-09-08T03:18:51,597   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:51,597     117 |     struct unary_function
2025-09-08T03:18:51,597         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:55,237   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:18:55,237                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:18:55,237                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2025-09-08T03:18:55,237   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:55,238      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:55,238         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:55,238   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:55,239                    from ./base//sbml/UnitDefinition.h:277:
2025-09-08T03:18:55,239   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:55,239     117 |     struct unary_function
2025-09-08T03:18:55,239         |            ^~~~~~~~~~~~~~
2025-09-08T03:18:59,074   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:18:59,074                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:18:59,075                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:18:59,075                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:18:59,075                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T03:18:59,075                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2025-09-08T03:18:59,075                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2025-09-08T03:18:59,075   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:18:59,075      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:18:59,075         |                           ^~~~~~~~~~~~~~
2025-09-08T03:18:59,076   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:18:59,076                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:18:59,076                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:18:59,076                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2025-09-08T03:18:59,076   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:18:59,076     117 |     struct unary_function
2025-09-08T03:18:59,077         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:04,758   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:19:04,758                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:19:04,758                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:19:04,758                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:19:04,758                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T03:19:04,758                    from ./base//sbml/validator/SBMLInternalValidator.h:64,
2025-09-08T03:19:04,759                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2025-09-08T03:19:04,759   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:04,759      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:04,759         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:04,760   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:19:04,760                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:19:04,760                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:19:04,760                    from ./base//sbml/validator/SBMLInternalValidator.h:63:
2025-09-08T03:19:04,760   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:04,760     117 |     struct unary_function
2025-09-08T03:19:04,760         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:09,352   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:19:09,352                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T03:19:09,352                    from ./base//sbml/SBMLDocument.h:292,
2025-09-08T03:19:09,352                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T03:19:09,352                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T03:19:09,353                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2025-09-08T03:19:09,353   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:09,353      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:09,353         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:09,353   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:19:09,353                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:19:09,353                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:19:09,354                    from ./base//sbml/validator/SBMLValidator.h:73:
2025-09-08T03:19:09,354   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:09,354     117 |     struct unary_function
2025-09-08T03:19:09,354         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:09,596   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T03:19:09,596   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:19:09,597      59 |   if (&orig == NULL)
2025-09-08T03:19:09,597         |             ^
2025-09-08T03:19:09,597   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2025-09-08T03:19:09,597      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2025-09-08T03:19:09,597         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:19:09,598   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T03:19:09,598   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:19:09,598      87 |   if (&rhs == NULL)
2025-09-08T03:19:09,598         |            ^
2025-09-08T03:19:09,598   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2025-09-08T03:19:09,599      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2025-09-08T03:19:09,599         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:19:09,600   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T03:19:09,600   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T03:19:09,600     168 |   if (&msg == NULL) return;
2025-09-08T03:19:09,600         |            ^
2025-09-08T03:19:09,600   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2025-09-08T03:19:09,601     166 | SBMLValidator::logFailure (const SBMLError& msg)
2025-09-08T03:19:09,601         |                            ~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:19:09,601   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T03:19:09,601   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T03:19:09,601     182 |   if (&filename == NULL) return 0;
2025-09-08T03:19:09,601         |                 ^
2025-09-08T03:19:09,601   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2025-09-08T03:19:09,601     180 | SBMLValidator::validate (const std::string& filename)
2025-09-08T03:19:09,601         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:19:10,046   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T03:19:10,046   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:19:10,046      87 |   if (&rhs == NULL)
2025-09-08T03:19:10,046         |   ^~
2025-09-08T03:19:10,046   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T03:19:10,046   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:19:10,047      59 |   if (&orig == NULL)
2025-09-08T03:19:10,047         |   ^~
2025-09-08T03:19:10,050   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T03:19:10,050   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:19:10,050     168 |   if (&msg == NULL) return;
2025-09-08T03:19:10,051         |   ^~
2025-09-08T03:19:10,051   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T03:19:10,051   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:19:10,051     182 |   if (&filename == NULL) return 0;
2025-09-08T03:19:10,051         |   ^~
2025-09-08T03:19:13,011   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:19:13,011                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:19:13,012                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2025-09-08T03:19:13,012   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:13,012      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:13,012         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:13,012   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:19:13,012                    from ./base//sbml/UnitDefinition.h:277:
2025-09-08T03:19:13,012   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:13,012     117 |     struct unary_function
2025-09-08T03:19:13,013         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:19,984   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:19:19,985                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:19:19,985                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2025-09-08T03:19:19,985   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:19,985      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:19,985         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:19,986   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:19:19,986                    from ./base//sbml/UnitDefinition.h:277:
2025-09-08T03:19:19,986   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:19,986     117 |     struct unary_function
2025-09-08T03:19:19,986         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:28,866   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:19:28,866                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:19:28,867                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:19:28,867                    from ./base/sbml/validator/VConstraint.cpp:33:
2025-09-08T03:19:28,867   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:28,867      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:28,867         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:28,868   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:19:28,868                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:19:28,868   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:28,868     117 |     struct unary_function
2025-09-08T03:19:28,868         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:29,278   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2025-09-08T03:19:29,279   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2025-09-08T03:19:29,279      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T03:19:29,279         |               ^
2025-09-08T03:19:29,279   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2025-09-08T03:19:29,279      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T03:19:29,279         |                          ~~~~~~~~~~~~~^~~~~~
2025-09-08T03:19:29,280   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2025-09-08T03:19:29,280      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T03:19:29,280         |                                   ^
2025-09-08T03:19:29,280   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2025-09-08T03:19:29,280      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T03:19:29,280         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:19:29,670   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:19:29,670      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T03:19:29,670         |               ^
2025-09-08T03:19:29,670   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:19:29,670      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T03:19:29,671         |                                   ^
2025-09-08T03:19:32,383   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2025-09-08T03:19:32,383                    from ./base/sbml/validator/Validator.cpp:39:
2025-09-08T03:19:32,384   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:32,384      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:32,384         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:32,384   In file included from /usr/include/c++/14/functional:49,
2025-09-08T03:19:32,385                    from ./base/sbml/validator/Validator.cpp:34:
2025-09-08T03:19:32,385   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:32,385     117 |     struct unary_function
2025-09-08T03:19:32,385         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:32,917   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:32,917      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T03:19:32,917         |                       ^~~~~~~~~~~~~~
2025-09-08T03:19:32,918   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:32,918     117 |     struct unary_function
2025-09-08T03:19:32,918         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:33,293   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T03:19:33,293   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T03:19:33,293     709 |   if (&msg == NULL) return;
2025-09-08T03:19:33,294         |            ^
2025-09-08T03:19:33,294   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2025-09-08T03:19:33,294     707 | Validator::logFailure (const SBMLError& msg)
2025-09-08T03:19:33,294         |                        ~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:19:33,296   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T03:19:33,296   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T03:19:33,296     754 |   if (&d == NULL) return 0;
2025-09-08T03:19:33,296         |          ^
2025-09-08T03:19:33,296   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2025-09-08T03:19:33,296     752 | Validator::validate (const SBMLDocument& d)
2025-09-08T03:19:33,296         |                      ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T03:19:33,302   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T03:19:33,303   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T03:19:33,303     815 |   if (&filename == NULL) return 0;
2025-09-08T03:19:33,303         |                 ^
2025-09-08T03:19:33,303   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2025-09-08T03:19:33,303     813 | Validator::validate (const std::string& filename)
2025-09-08T03:19:33,303         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:19:34,594   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T03:19:34,594   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:19:34,594     709 |   if (&msg == NULL) return;
2025-09-08T03:19:34,594         |   ^~
2025-09-08T03:19:34,615   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T03:19:34,615   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:19:34,615     754 |   if (&d == NULL) return 0;
2025-09-08T03:19:34,615         |   ^~
2025-09-08T03:19:34,616   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T03:19:34,616   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:19:34,616     815 |   if (&filename == NULL) return 0;
2025-09-08T03:19:34,616         |   ^~
2025-09-08T03:19:40,932   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:19:40,932                    from ./base//sbml/Model.h:409,
2025-09-08T03:19:40,932                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2025-09-08T03:19:40,932   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:40,933      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:40,933         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:40,933   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:19:40,933                    from ./base//sbml/Model.h:407:
2025-09-08T03:19:40,933   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:40,934     117 |     struct unary_function
2025-09-08T03:19:40,934         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:45,142   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:19:45,142                    from ./base//sbml/Model.h:409,
2025-09-08T03:19:45,142                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2025-09-08T03:19:45,142   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:45,143      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:45,143         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:45,143   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:19:45,143                    from ./base//sbml/Model.h:407:
2025-09-08T03:19:45,143   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:45,143     117 |     struct unary_function
2025-09-08T03:19:45,143         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:49,047   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:19:49,047                    from ./base//sbml/Model.h:409,
2025-09-08T03:19:49,048                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2025-09-08T03:19:49,048   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:49,048      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:49,048         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:49,049   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:19:49,049                    from ./base//sbml/Model.h:407:
2025-09-08T03:19:49,049   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:49,049     117 |     struct unary_function
2025-09-08T03:19:49,049         |            ^~~~~~~~~~~~~~
2025-09-08T03:19:57,058   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:19:57,059                    from ./base//sbml/Model.h:409,
2025-09-08T03:19:57,059                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2025-09-08T03:19:57,059   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:19:57,059      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:19:57,059         |                           ^~~~~~~~~~~~~~
2025-09-08T03:19:57,059   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:19:57,059                    from ./base//sbml/Model.h:407:
2025-09-08T03:19:57,059   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:19:57,059     117 |     struct unary_function
2025-09-08T03:19:57,060         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:01,430   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:01,430                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:01,431                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2025-09-08T03:20:01,431   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:01,431      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:01,431         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:01,432   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:01,432                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:01,432   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:01,432     117 |     struct unary_function
2025-09-08T03:20:01,432         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:01,750   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:20:01,750   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:20:01,750     104 |   if (&(node) == NULL)
2025-09-08T03:20:01,750         |               ^
2025-09-08T03:20:01,751   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2025-09-08T03:20:01,751     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:20:01,751         |                                                ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:20:02,174   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:20:02,175     104 |   if (&(node) == NULL)
2025-09-08T03:20:02,175         |   ^~
2025-09-08T03:20:05,387   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:05,387                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:05,387                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2025-09-08T03:20:05,387   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:05,387      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:05,387         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:05,388   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:05,388                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:05,389   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:05,389     117 |     struct unary_function
2025-09-08T03:20:05,389         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:05,720   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:05,720     119 | struct CycleContains : public unary_function<IdList, bool>
2025-09-08T03:20:05,720         |                               ^~~~~~~~~~~~~~
2025-09-08T03:20:05,720   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:05,721     117 |     struct unary_function
2025-09-08T03:20:05,721         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:10,608   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:20:10,609                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:20:10,609                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:20:10,609                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2025-09-08T03:20:10,609   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:10,609      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:10,609         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:10,610   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:10,610                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:20:10,610                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:20:10,610                    from ./base//sbml/SBO.h:197,
2025-09-08T03:20:10,610                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2025-09-08T03:20:10,610   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:10,610     117 |     struct unary_function
2025-09-08T03:20:10,610         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:14,391   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:14,391                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:14,391                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2025-09-08T03:20:14,391   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:14,391      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:14,391         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:14,392   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:14,392                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:14,392   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:14,392     117 |     struct unary_function
2025-09-08T03:20:14,392         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:18,704   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:18,704                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:18,704                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2025-09-08T03:20:18,704   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:18,704      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:18,704         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:18,705   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:18,705                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:18,705   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:18,706     117 |     struct unary_function
2025-09-08T03:20:18,706         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:19,021   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:20:19,021   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:20:19,021     101 |   if (&(node) == NULL)
2025-09-08T03:20:19,022         |               ^
2025-09-08T03:20:19,022   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2025-09-08T03:20:19,022      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:20:19,022         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:20:19,424   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:20:19,424     101 |   if (&(node) == NULL)
2025-09-08T03:20:19,424         |   ^~
2025-09-08T03:20:22,499   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:22,499                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:22,499                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2025-09-08T03:20:22,499   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:22,500      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:22,500         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:22,500   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:22,501                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:22,501   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:22,501     117 |     struct unary_function
2025-09-08T03:20:22,501         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:26,729   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:26,730                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:26,730                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2025-09-08T03:20:26,730   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:26,730      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:26,730         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:26,731   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:26,731                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:26,731   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:26,731     117 |     struct unary_function
2025-09-08T03:20:26,731         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:27,056   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:20:27,056   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:20:27,056     103 |   if (&(node) == NULL)
2025-09-08T03:20:27,056         |               ^
2025-09-08T03:20:27,056   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2025-09-08T03:20:27,056     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:20:27,056         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:20:27,465   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:20:27,466     103 |   if (&(node) == NULL)
2025-09-08T03:20:27,466         |   ^~
2025-09-08T03:20:30,561   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:30,561                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:30,561                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2025-09-08T03:20:30,561   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:30,562      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:30,562         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:30,562   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:30,563                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:30,563   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:30,563     117 |     struct unary_function
2025-09-08T03:20:30,563         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:34,289   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:34,289                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:34,289                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2025-09-08T03:20:34,289   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:34,289      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:34,289         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:34,290   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:34,290                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:34,290   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:34,290     117 |     struct unary_function
2025-09-08T03:20:34,290         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:34,606   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:20:34,607   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:20:34,607     104 |   if (&(node) == NULL)
2025-09-08T03:20:34,607         |               ^
2025-09-08T03:20:34,607   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T03:20:34,607     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:20:34,607         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:20:35,018   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:20:35,018     104 |   if (&(node) == NULL)
2025-09-08T03:20:35,018         |   ^~
2025-09-08T03:20:38,209   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:38,210                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:38,210                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2025-09-08T03:20:38,210   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:38,210      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:38,210         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:38,210   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:38,210                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:38,210   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:38,210     117 |     struct unary_function
2025-09-08T03:20:38,211         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:42,089   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:20:42,089                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:20:42,089                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:20:42,089                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T03:20:42,089                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2025-09-08T03:20:42,089   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:42,089      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:42,089         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:42,090   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:42,090                    from ./base/sbml/validator/constraints/IdBase.h:42:
2025-09-08T03:20:42,090   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:42,090     117 |     struct unary_function
2025-09-08T03:20:42,090         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:45,799   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:20:45,799                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:20:45,799                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:20:45,800                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2025-09-08T03:20:45,800   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:45,800      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:45,800         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:45,800   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:45,800                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:20:45,800   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:45,800     117 |     struct unary_function
2025-09-08T03:20:45,800         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:49,488   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:20:49,489                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:20:49,489                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:20:49,489                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2025-09-08T03:20:49,489   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:49,489      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:49,489         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:49,489   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:49,489                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:20:49,489                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:20:49,490                    from ./base//sbml/SBO.h:197,
2025-09-08T03:20:49,490                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2025-09-08T03:20:49,490   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:49,490     117 |     struct unary_function
2025-09-08T03:20:49,490         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:53,277   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:53,278                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:53,278                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2025-09-08T03:20:53,278   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:53,278      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:53,278         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:53,278   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:53,278                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:53,278   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:53,278     117 |     struct unary_function
2025-09-08T03:20:53,279         |            ^~~~~~~~~~~~~~
2025-09-08T03:20:57,786   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:20:57,787                    from ./base//sbml/Model.h:409,
2025-09-08T03:20:57,787                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2025-09-08T03:20:57,787   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:20:57,787      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:20:57,787         |                           ^~~~~~~~~~~~~~
2025-09-08T03:20:57,787   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:20:57,787                    from ./base//sbml/Model.h:407:
2025-09-08T03:20:57,787   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:20:57,788     117 |     struct unary_function
2025-09-08T03:20:57,788         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:01,782   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:21:01,782                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:21:01,782                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2025-09-08T03:21:01,782   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:01,782      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:01,783         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:01,783   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:01,783                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:21:01,783                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:21:01,783                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:21:01,783                    from ./base//sbml/SBase.h:154,
2025-09-08T03:21:01,783                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2025-09-08T03:21:01,783   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:01,783     117 |     struct unary_function
2025-09-08T03:21:01,784         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:05,244   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:21:05,244                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:21:05,244                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2025-09-08T03:21:05,244   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:05,244      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:05,244         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:05,244   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:05,245                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:21:05,245                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:21:05,245                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:21:05,245                    from ./base//sbml/SBase.h:154,
2025-09-08T03:21:05,245                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2025-09-08T03:21:05,245   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:05,245     117 |     struct unary_function
2025-09-08T03:21:05,245         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:08,729   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:21:08,730                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:21:08,730                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2025-09-08T03:21:08,730   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:08,730      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:08,730         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:08,730   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:08,730                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:21:08,730                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:21:08,731                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:21:08,731                    from ./base//sbml/SBase.h:154,
2025-09-08T03:21:08,731                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2025-09-08T03:21:08,731   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:08,731     117 |     struct unary_function
2025-09-08T03:21:08,731         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:12,219   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:21:12,220                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:21:12,220                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2025-09-08T03:21:12,220   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:12,220      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:12,220         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:12,220   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:12,220                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:21:12,220                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:21:12,221                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:21:12,221                    from ./base//sbml/SBase.h:154,
2025-09-08T03:21:12,221                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2025-09-08T03:21:12,221   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:12,221     117 |     struct unary_function
2025-09-08T03:21:12,221         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:15,704   In file included from ./base//sbml/Rule.h:140,
2025-09-08T03:21:15,705                    from ./base//sbml/AssignmentRule.h:170,
2025-09-08T03:21:15,705                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2025-09-08T03:21:15,705   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:15,705      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:15,705         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:15,705   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:15,705                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:21:15,705                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:21:15,706                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:21:15,706                    from ./base//sbml/SBase.h:154,
2025-09-08T03:21:15,706                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2025-09-08T03:21:15,706   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:15,706     117 |     struct unary_function
2025-09-08T03:21:15,706         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:19,249   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:21:19,249                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:21:19,249                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:21:19,249                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2025-09-08T03:21:19,249   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:19,249      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:19,249         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:19,250   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:19,250                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:21:19,250                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:21:19,250                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:21:19,250                    from ./base//sbml/SBase.h:154,
2025-09-08T03:21:19,251                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2025-09-08T03:21:19,251   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:19,251     117 |     struct unary_function
2025-09-08T03:21:19,251         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:22,842   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:21:22,842                    from ./base//sbml/Model.h:409,
2025-09-08T03:21:22,842                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2025-09-08T03:21:22,843   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:22,843      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:22,843         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:22,843   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:22,843                    from ./base//sbml/Model.h:407:
2025-09-08T03:21:22,843   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:22,843     117 |     struct unary_function
2025-09-08T03:21:22,843         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:23,159   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:21:23,159   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:21:23,159     104 |   if (&(node) == NULL)
2025-09-08T03:21:23,159         |               ^
2025-09-08T03:21:23,159   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2025-09-08T03:21:23,159     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:21:23,159         |                                             ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:21:23,559   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:21:23,559     104 |   if (&(node) == NULL)
2025-09-08T03:21:23,559         |   ^~
2025-09-08T03:21:26,595   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:21:26,595                    from ./base//sbml/Model.h:409,
2025-09-08T03:21:26,595                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2025-09-08T03:21:26,595   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:26,595      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:26,595         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:26,596   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:26,596                    from ./base//sbml/Model.h:407:
2025-09-08T03:21:26,596   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:26,596     117 |     struct unary_function
2025-09-08T03:21:26,596         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:26,911   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:21:26,911   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:21:26,911     104 |   if (&(node) == NULL)
2025-09-08T03:21:26,911         |               ^
2025-09-08T03:21:26,912   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T03:21:26,912     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:21:26,912         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:21:27,334   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:21:27,334     104 |   if (&(node) == NULL)
2025-09-08T03:21:27,334         |   ^~
2025-09-08T03:21:30,522   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:21:30,522                    from ./base//sbml/Model.h:409,
2025-09-08T03:21:30,522                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2025-09-08T03:21:30,522   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:30,522      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:30,523         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:30,523   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:30,523                    from ./base//sbml/Model.h:407:
2025-09-08T03:21:30,523   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:30,523     117 |     struct unary_function
2025-09-08T03:21:30,523         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:34,912   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:21:34,913                    from ./base//sbml/Model.h:409,
2025-09-08T03:21:34,913                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2025-09-08T03:21:34,913   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:34,913      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:34,913         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:34,913   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:34,913                    from ./base//sbml/Model.h:407:
2025-09-08T03:21:34,913   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:34,914     117 |     struct unary_function
2025-09-08T03:21:34,914         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:35,228   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:21:35,228   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:21:35,228     100 |   if (&(node) == NULL)
2025-09-08T03:21:35,228         |               ^
2025-09-08T03:21:35,229   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2025-09-08T03:21:35,229      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:21:35,229         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:21:35,630   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:21:35,631     100 |   if (&(node) == NULL)
2025-09-08T03:21:35,631         |   ^~
2025-09-08T03:21:38,676   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:21:38,676                    from ./base//sbml/Model.h:409,
2025-09-08T03:21:38,676                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2025-09-08T03:21:38,676   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:38,677      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:38,677         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:38,677   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:38,677                    from ./base//sbml/Model.h:407:
2025-09-08T03:21:38,677   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:38,677     117 |     struct unary_function
2025-09-08T03:21:38,677         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:42,944   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:21:42,944                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:21:42,945                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:21:42,945                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2025-09-08T03:21:42,945   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:42,945      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:42,945         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:42,945   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:42,945                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:21:42,945   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:42,945     117 |     struct unary_function
2025-09-08T03:21:42,946         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:46,364   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:21:46,364                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:21:46,364                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:21:46,364                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2025-09-08T03:21:46,364   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:46,365      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:46,365         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:46,365   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:46,365                    from ./base//sbml/validator/VConstraint.h:48:
2025-09-08T03:21:46,365   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:46,365     117 |     struct unary_function
2025-09-08T03:21:46,365         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:49,964   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:21:49,964                    from ./base//sbml/Model.h:409,
2025-09-08T03:21:49,964                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2025-09-08T03:21:49,964   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:49,964      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:49,964         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:49,964   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:49,965                    from ./base//sbml/Model.h:407:
2025-09-08T03:21:49,965   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:49,965     117 |     struct unary_function
2025-09-08T03:21:49,965         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:50,281   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:21:50,281   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:21:50,281     100 |   if (&(node) == NULL)
2025-09-08T03:21:50,281         |               ^
2025-09-08T03:21:50,281   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2025-09-08T03:21:50,281      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:21:50,281         |                                                 ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:21:50,696   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:21:50,696     100 |   if (&(node) == NULL)
2025-09-08T03:21:50,697         |   ^~
2025-09-08T03:21:53,933   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:21:53,934                    from ./base//sbml/Model.h:409,
2025-09-08T03:21:53,934                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2025-09-08T03:21:53,934   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:53,934      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:53,934         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:53,934   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:53,934                    from ./base//sbml/Model.h:407:
2025-09-08T03:21:53,934   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:53,934     117 |     struct unary_function
2025-09-08T03:21:53,935         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:54,251   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:21:54,251   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:21:54,252     105 |   if (&(node) == NULL)
2025-09-08T03:21:54,252         |               ^
2025-09-08T03:21:54,252   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2025-09-08T03:21:54,252     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:21:54,252         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:21:54,656   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:21:54,657     105 |   if (&(node) == NULL)
2025-09-08T03:21:54,657         |   ^~
2025-09-08T03:21:57,710   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:21:57,710                    from ./base//sbml/Model.h:409,
2025-09-08T03:21:57,710                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2025-09-08T03:21:57,710   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:21:57,710      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:21:57,710         |                           ^~~~~~~~~~~~~~
2025-09-08T03:21:57,710   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:21:57,711                    from ./base//sbml/Model.h:407:
2025-09-08T03:21:57,711   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:21:57,711     117 |     struct unary_function
2025-09-08T03:21:57,711         |            ^~~~~~~~~~~~~~
2025-09-08T03:21:58,025   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:21:58,025   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:21:58,026     104 |   if (&(node) == NULL)
2025-09-08T03:21:58,026         |               ^
2025-09-08T03:21:58,026   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2025-09-08T03:21:58,026     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:21:58,026         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:21:58,428   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:21:58,429     104 |   if (&(node) == NULL)
2025-09-08T03:21:58,429         |   ^~
2025-09-08T03:22:01,471   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:22:01,471                    from ./base//sbml/Model.h:409,
2025-09-08T03:22:01,471                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2025-09-08T03:22:01,471   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:01,472      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:01,472         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:01,472   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:01,472                    from ./base//sbml/Model.h:407:
2025-09-08T03:22:01,472   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:01,472     117 |     struct unary_function
2025-09-08T03:22:01,472         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:04,124   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2025-09-08T03:22:04,124   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2025-09-08T03:22:04,124     188 |       sprintf(react, "KL_%u", n);
2025-09-08T03:22:04,124         |                          ^~
2025-09-08T03:22:04,124   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2025-09-08T03:22:04,124     188 |       sprintf(react, "KL_%u", n);
2025-09-08T03:22:04,125         |                      ^~~~~~~
2025-09-08T03:22:04,125   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2025-09-08T03:22:04,125     188 |       sprintf(react, "KL_%u", n);
2025-09-08T03:22:04,125         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T03:22:04,125   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2025-09-08T03:22:04,125     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T03:22:04,125         |                         ^~
2025-09-08T03:22:04,125   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2025-09-08T03:22:04,125     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T03:22:04,126         |                   ^~~~~~~~~
2025-09-08T03:22:04,126   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2025-09-08T03:22:04,126     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T03:22:04,126         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T03:22:15,025   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:22:15,025                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:22:15,025                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:22:15,025                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2025-09-08T03:22:15,025                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2025-09-08T03:22:15,025   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:15,025      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:15,025         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:15,026   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:15,026                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2025-09-08T03:22:15,026   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:15,026     117 |     struct unary_function
2025-09-08T03:22:15,026         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:18,560   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:22:18,560                    from ./base//sbml/Model.h:409,
2025-09-08T03:22:18,560                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2025-09-08T03:22:18,560   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:18,560      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:18,560         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:18,560   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:18,561                    from ./base//sbml/Model.h:407:
2025-09-08T03:22:18,561   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:18,561     117 |     struct unary_function
2025-09-08T03:22:18,561         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:18,882   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:22:18,883   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:22:18,883     100 |   if (&(node) == NULL)
2025-09-08T03:22:18,883         |               ^
2025-09-08T03:22:18,883   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2025-09-08T03:22:18,883      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:22:18,883         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:22:19,285   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:22:19,285     100 |   if (&(node) == NULL)
2025-09-08T03:22:19,285         |   ^~
2025-09-08T03:22:22,367   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:22:22,367                    from ./base//sbml/Model.h:409,
2025-09-08T03:22:22,367                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2025-09-08T03:22:22,367   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:22,367      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:22,367         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:22,368   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:22,368                    from ./base//sbml/Model.h:407:
2025-09-08T03:22:22,368   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:22,368     117 |     struct unary_function
2025-09-08T03:22:22,368         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:22,684   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:22:22,685   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:22:22,685     103 |   if (&(node) == NULL)
2025-09-08T03:22:22,685         |               ^
2025-09-08T03:22:22,685   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2025-09-08T03:22:22,685     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:22:22,685         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:22:23,088   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:22:23,089     103 |   if (&(node) == NULL)
2025-09-08T03:22:23,089         |   ^~
2025-09-08T03:22:26,166   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:22:26,166                    from ./base//sbml/Model.h:409,
2025-09-08T03:22:26,166                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2025-09-08T03:22:26,166   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:26,166      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:26,166         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:26,166   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:26,167                    from ./base//sbml/Model.h:407:
2025-09-08T03:22:26,167   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:26,167     117 |     struct unary_function
2025-09-08T03:22:26,167         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:30,770   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:22:30,770                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:22:30,770                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:22:30,770                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2025-09-08T03:22:30,770   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:30,770      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:30,771         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:30,771   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:30,771                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:22:30,771                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:22:30,771                    from ./base//sbml/SBO.h:197,
2025-09-08T03:22:30,771                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2025-09-08T03:22:30,771   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:30,771     117 |     struct unary_function
2025-09-08T03:22:30,771         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:34,429   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:22:34,429                    from ./base//sbml/Model.h:409,
2025-09-08T03:22:34,429                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2025-09-08T03:22:34,429   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:34,429      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:34,429         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:34,430   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:34,430                    from ./base//sbml/Model.h:407:
2025-09-08T03:22:34,430   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:34,430     117 |     struct unary_function
2025-09-08T03:22:34,430         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:38,469   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:22:38,469                    from ./base//sbml/Model.h:409,
2025-09-08T03:22:38,469                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2025-09-08T03:22:38,469   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:38,469      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:38,469         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:38,470   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:38,470                    from ./base//sbml/Model.h:407:
2025-09-08T03:22:38,470   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:38,470     117 |     struct unary_function
2025-09-08T03:22:38,471         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:42,749   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:22:42,750                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:22:42,750                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:22:42,750                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T03:22:42,750                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2025-09-08T03:22:42,750                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2025-09-08T03:22:42,750   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:42,750      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:42,750         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:42,750   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:42,751                    from ./base//sbml/xml/XMLAttributes.h:51,
2025-09-08T03:22:42,751                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2025-09-08T03:22:42,751                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T03:22:42,751                    from ./base//sbml/SBase.h:154,
2025-09-08T03:22:42,751                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2025-09-08T03:22:42,751   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:42,751     117 |     struct unary_function
2025-09-08T03:22:42,751         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:47,270   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:22:47,270                    from ./base//sbml/Model.h:409,
2025-09-08T03:22:47,270                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2025-09-08T03:22:47,270   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:47,270      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:47,270         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:47,270   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:47,271                    from ./base//sbml/Model.h:407:
2025-09-08T03:22:47,271   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:47,271     117 |     struct unary_function
2025-09-08T03:22:47,271         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:50,835   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:22:50,835                    from ./base//sbml/Model.h:409,
2025-09-08T03:22:50,835                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2025-09-08T03:22:50,835   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:50,835      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:50,835         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:50,835   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:50,835                    from ./base//sbml/Model.h:407:
2025-09-08T03:22:50,836   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:50,836     117 |     struct unary_function
2025-09-08T03:22:50,836         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:54,414   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:22:54,414                    from ./base//sbml/Model.h:409,
2025-09-08T03:22:54,414                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2025-09-08T03:22:54,414   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:54,414      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:54,414         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:54,414   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:54,414                    from ./base//sbml/Model.h:407:
2025-09-08T03:22:54,415   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:54,415     117 |     struct unary_function
2025-09-08T03:22:54,415         |            ^~~~~~~~~~~~~~
2025-09-08T03:22:57,986   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:22:57,986                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:22:57,986                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:22:57,986                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2025-09-08T03:22:57,986                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2025-09-08T03:22:57,986   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:22:57,987      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:22:57,987         |                           ^~~~~~~~~~~~~~
2025-09-08T03:22:57,987   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:22:57,987                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2025-09-08T03:22:57,987   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:22:57,987     117 |     struct unary_function
2025-09-08T03:22:57,987         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:02,901   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:23:02,901                    from ./base//sbml/Model.h:409,
2025-09-08T03:23:02,901                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2025-09-08T03:23:02,901   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:02,901      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:23:02,901         |                           ^~~~~~~~~~~~~~
2025-09-08T03:23:02,901   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:23:02,902                    from ./base//sbml/Model.h:407:
2025-09-08T03:23:02,902   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:02,902     117 |     struct unary_function
2025-09-08T03:23:02,902         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:07,131   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:23:07,131                    from ./base//sbml/Model.h:409,
2025-09-08T03:23:07,131                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2025-09-08T03:23:07,132   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:07,132      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:23:07,132         |                           ^~~~~~~~~~~~~~
2025-09-08T03:23:07,132   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:23:07,132                    from ./base//sbml/Model.h:407:
2025-09-08T03:23:07,132   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:07,132     117 |     struct unary_function
2025-09-08T03:23:07,132         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:10,687   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:23:10,687                    from ./base//sbml/Model.h:409,
2025-09-08T03:23:10,687                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2025-09-08T03:23:10,687   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:10,687      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:23:10,687         |                           ^~~~~~~~~~~~~~
2025-09-08T03:23:10,688   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:23:10,688                    from ./base//sbml/Model.h:407:
2025-09-08T03:23:10,688   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:10,688     117 |     struct unary_function
2025-09-08T03:23:10,688         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:14,342   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:23:14,342                    from ./base//sbml/Model.h:409,
2025-09-08T03:23:14,342                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2025-09-08T03:23:14,342   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:14,342      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:23:14,342         |                           ^~~~~~~~~~~~~~
2025-09-08T03:23:14,343   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:23:14,343                    from ./base//sbml/Model.h:407:
2025-09-08T03:23:14,343   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:14,343     117 |     struct unary_function
2025-09-08T03:23:14,343         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:17,980   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:23:17,980                    from ./base//sbml/Model.h:409,
2025-09-08T03:23:17,980                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2025-09-08T03:23:17,980   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:17,980      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:23:17,980         |                           ^~~~~~~~~~~~~~
2025-09-08T03:23:17,980   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:23:17,981                    from ./base//sbml/Model.h:407:
2025-09-08T03:23:17,981   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:17,981     117 |     struct unary_function
2025-09-08T03:23:17,981         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:21,649   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:23:21,650                    from ./base//sbml/Model.h:409,
2025-09-08T03:23:21,650                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2025-09-08T03:23:21,650   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:21,650      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:23:21,650         |                           ^~~~~~~~~~~~~~
2025-09-08T03:23:21,650   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:23:21,650                    from ./base//sbml/Model.h:407:
2025-09-08T03:23:21,650   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:21,650     117 |     struct unary_function
2025-09-08T03:23:21,651         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:25,291   In file included from ./base//sbml/UnitDefinition.h:280,
2025-09-08T03:23:25,291                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T03:23:25,291                    from ./base//sbml/validator/VConstraint.h:52,
2025-09-08T03:23:25,291                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2025-09-08T03:23:25,291   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:25,292      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:23:25,292         |                           ^~~~~~~~~~~~~~
2025-09-08T03:23:25,292   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:23:25,292                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T03:23:25,292                    from ./base//sbml/SBMLNamespaces.h:100,
2025-09-08T03:23:25,292                    from ./base//sbml/SBO.h:197,
2025-09-08T03:23:25,292                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2025-09-08T03:23:25,292   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:25,292     117 |     struct unary_function
2025-09-08T03:23:25,293         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:29,007   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:23:29,007                    from ./base//sbml/Model.h:409,
2025-09-08T03:23:29,007                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2025-09-08T03:23:29,007   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:29,007      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:23:29,007         |                           ^~~~~~~~~~~~~~
2025-09-08T03:23:29,008   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:23:29,008                    from ./base//sbml/Model.h:407:
2025-09-08T03:23:29,008   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:29,008     117 |     struct unary_function
2025-09-08T03:23:29,008         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:32,928   In file included from ./base//sbml/FunctionDefinition.h:148,
2025-09-08T03:23:32,928                    from ./base//sbml/Model.h:409,
2025-09-08T03:23:32,928                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2025-09-08T03:23:32,928   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:32,928      78 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:23:32,928         |                           ^~~~~~~~~~~~~~
2025-09-08T03:23:32,929   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:23:32,929                    from ./base//sbml/Model.h:407:
2025-09-08T03:23:32,929   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:32,929     117 |     struct unary_function
2025-09-08T03:23:32,929         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:33,245   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T03:23:33,245   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:23:33,245     100 |   if (&(node) == NULL)
2025-09-08T03:23:33,245         |               ^
2025-09-08T03:23:33,246   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2025-09-08T03:23:33,246      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T03:23:33,246         |                                               ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:33,644   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:33,645     100 |   if (&(node) == NULL)
2025-09-08T03:23:33,645         |   ^~
2025-09-08T03:23:44,464   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T03:23:44,465   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:23:44,465      90 |   if (&orig == NULL)
2025-09-08T03:23:44,465         |             ^
2025-09-08T03:23:44,465   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2025-09-08T03:23:44,465      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2025-09-08T03:23:44,465         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:44,469   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T03:23:44,469   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:23:44,469     110 |   if (&rhs == NULL)
2025-09-08T03:23:44,469         |            ^
2025-09-08T03:23:44,470   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2025-09-08T03:23:44,470     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2025-09-08T03:23:44,470         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:23:44,471   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T03:23:44,471   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:23:44,471     149 |   if (&name == NULL || &value == NULL
2025-09-08T03:23:44,471         |             ^
2025-09-08T03:23:44,471   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2025-09-08T03:23:44,471     144 | XMLAttributes::add (const std::string& name,
2025-09-08T03:23:44,472         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:44,472   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:23:44,472     149 |   if (&name == NULL || &value == NULL
2025-09-08T03:23:44,472         |                               ^
2025-09-08T03:23:44,472   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2025-09-08T03:23:44,472     145 |                     const std::string& value,
2025-09-08T03:23:44,472         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:23:44,472   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2025-09-08T03:23:44,472     150 |                     || &namespaceURI == NULL
2025-09-08T03:23:44,473         |                                      ^
2025-09-08T03:23:44,473   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2025-09-08T03:23:44,473     146 |                     const std::string& namespaceURI,
2025-09-08T03:23:44,473         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T03:23:44,473   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T03:23:44,473     151 |                     || &prefix == NULL)
2025-09-08T03:23:44,473         |                                ^
2025-09-08T03:23:44,473   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2025-09-08T03:23:44,473     147 |                     const std::string& prefix)
2025-09-08T03:23:44,474         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:23:44,474   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T03:23:44,474   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:23:44,474     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:23:44,474         |               ^
2025-09-08T03:23:44,474   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2025-09-08T03:23:44,474     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T03:23:44,474         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:23:44,474   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:23:44,474     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:23:44,475         |                                 ^
2025-09-08T03:23:44,475   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2025-09-08T03:23:44,475     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T03:23:44,475         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:23:44,479   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T03:23:44,479   ./base/sbml/xml/XMLAttributes.cpp:279:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:23:44,479     279 |   if (&name == NULL) return -1;
2025-09-08T03:23:44,479         |             ^
2025-09-08T03:23:44,479   ./base/sbml/xml/XMLAttributes.cpp:277:45: note: ‘name’ declared here
2025-09-08T03:23:44,480     277 | XMLAttributes::getIndex (const std::string& name) const
2025-09-08T03:23:44,480         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:44,480   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T03:23:44,481   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:23:44,481     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T03:23:44,481         |             ^
2025-09-08T03:23:44,481   ./base/sbml/xml/XMLAttributes.cpp:297:45: note: ‘name’ declared here
2025-09-08T03:23:44,481     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T03:23:44,481         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:44,481   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:23:44,481     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T03:23:44,482         |                             ^
2025-09-08T03:23:44,482   ./base/sbml/xml/XMLAttributes.cpp:297:70: note: ‘uri’ declared here
2025-09-08T03:23:44,482     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T03:23:44,482         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:23:44,482   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T03:23:44,483   ./base/sbml/xml/XMLAttributes.cpp:318:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:23:44,483     318 |   if (&triple  == NULL) return -1;
2025-09-08T03:23:44,483         |                ^
2025-09-08T03:23:44,483   ./base/sbml/xml/XMLAttributes.cpp:316:43: note: ‘triple’ declared here
2025-09-08T03:23:44,483     316 | XMLAttributes::getIndex (const XMLTriple& triple) const
2025-09-08T03:23:44,483         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:23:44,488   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,488   ./base/sbml/xml/XMLAttributes.cpp:539:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:23:44,489     539 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T03:23:44,489         |                ^
2025-09-08T03:23:44,489   ./base/sbml/xml/XMLAttributes.cpp:527:41: note: ‘value’ declared here
2025-09-08T03:23:44,489     527 |                          , bool&        value
2025-09-08T03:23:44,489         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T03:23:44,490   ./base/sbml/xml/XMLAttributes.cpp:558:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:23:44,491     558 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T03:23:44,491         |                                          ^
2025-09-08T03:23:44,491   ./base/sbml/xml/XMLAttributes.cpp:526:47: note: ‘name’ declared here
2025-09-08T03:23:44,491     526 |                          , const std::string& name
2025-09-08T03:23:44,491         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:44,492   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,492   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:23:44,492     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T03:23:44,492         |               ^
2025-09-08T03:23:44,492   ./base/sbml/xml/XMLAttributes.cpp:609:45: note: ‘triple’ declared here
2025-09-08T03:23:44,492     609 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T03:23:44,493         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:23:44,493   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:23:44,493     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T03:23:44,493         |                                 ^
2025-09-08T03:23:44,493   ./base/sbml/xml/XMLAttributes.cpp:610:45: note: ‘value’ declared here
2025-09-08T03:23:44,493     610 |                          , bool&            value
2025-09-08T03:23:44,493         |                            ~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:23:44,493   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,493   ./base/sbml/xml/XMLAttributes.cpp:653:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:23:44,494     653 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T03:23:44,494         |                 ^
2025-09-08T03:23:44,494   ./base/sbml/xml/XMLAttributes.cpp:641:41: note: ‘value’ declared here
2025-09-08T03:23:44,494     641 |                          , double&      value
2025-09-08T03:23:44,494         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T03:23:44,496   ./base/sbml/xml/XMLAttributes.cpp:701:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:23:44,497     701 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T03:23:44,497         |                                          ^
2025-09-08T03:23:44,497   ./base/sbml/xml/XMLAttributes.cpp:640:47: note: ‘name’ declared here
2025-09-08T03:23:44,497     640 |                          , const std::string& name
2025-09-08T03:23:44,497         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:44,499   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,499   ./base/sbml/xml/XMLAttributes.cpp:799:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:23:44,499     799 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T03:23:44,499         |                                     ^
2025-09-08T03:23:44,499   ./base/sbml/xml/XMLAttributes.cpp:787:41: note: ‘value’ declared here
2025-09-08T03:23:44,499     787 |                          , long&        value
2025-09-08T03:23:44,499         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T03:23:44,499   ./base/sbml/xml/XMLAttributes.cpp:819:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:23:44,500     819 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T03:23:44,500         |                                          ^
2025-09-08T03:23:44,500   ./base/sbml/xml/XMLAttributes.cpp:786:65: note: ‘name’ declared here
2025-09-08T03:23:44,500     786 |                                            , const std::string& name
2025-09-08T03:23:44,500         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:44,500   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,501   ./base/sbml/xml/XMLAttributes.cpp:854:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:23:44,501     854 |   if (&triple == NULL) return false;
2025-09-08T03:23:44,501         |               ^
2025-09-08T03:23:44,501   ./base/sbml/xml/XMLAttributes.cpp:847:45: note: ‘triple’ declared here
2025-09-08T03:23:44,501     847 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T03:23:44,501         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:23:44,502   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,502   ./base/sbml/xml/XMLAttributes.cpp:943:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:23:44,502     943 |   if (&triple == NULL) return false;
2025-09-08T03:23:44,502         |               ^
2025-09-08T03:23:44,503   ./base/sbml/xml/XMLAttributes.cpp:936:45: note: ‘triple’ declared here
2025-09-08T03:23:44,503     936 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T03:23:44,503         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:23:44,504   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,504   ./base/sbml/xml/XMLAttributes.cpp:1035:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:23:44,504    1035 |   if (&triple == NULL) return false;
2025-09-08T03:23:44,504         |               ^
2025-09-08T03:23:44,504   ./base/sbml/xml/XMLAttributes.cpp:1028:45: note: ‘triple’ declared here
2025-09-08T03:23:44,505    1028 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T03:23:44,505         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:23:44,505   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,505   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:23:44,506    1089 |   if ( index != -1 && &value != NULL)
2025-09-08T03:23:44,506         |                              ^
2025-09-08T03:23:44,506   ./base/sbml/xml/XMLAttributes.cpp:1081:41: note: ‘value’ declared here
2025-09-08T03:23:44,506    1081 |                          , std::string& value
2025-09-08T03:23:44,506         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T03:23:44,506   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:23:44,506    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T03:23:44,506         |                                                      ^
2025-09-08T03:23:44,507   ./base/sbml/xml/XMLAttributes.cpp:1080:47: note: ‘name’ declared here
2025-09-08T03:23:44,507    1080 |                          , const std::string& name
2025-09-08T03:23:44,507         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:44,507   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,507   ./base/sbml/xml/XMLAttributes.cpp:1125:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:23:44,507    1125 |   if (&triple == NULL) return false;
2025-09-08T03:23:44,507         |               ^
2025-09-08T03:23:44,507   ./base/sbml/xml/XMLAttributes.cpp:1118:45: note: ‘triple’ declared here
2025-09-08T03:23:44,507    1118 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T03:23:44,508         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:23:44,870   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T03:23:44,870   ./base/sbml/xml/XMLAttributes.cpp:318:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,870     318 |   if (&triple  == NULL) return -1;
2025-09-08T03:23:44,870         |   ^~
2025-09-08T03:23:44,882   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T03:23:44,882   ./base/sbml/xml/XMLAttributes.cpp:279:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,882     279 |   if (&name == NULL) return -1;
2025-09-08T03:23:44,882         |   ^~
2025-09-08T03:23:44,883   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T03:23:44,883   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,883     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T03:23:44,883         |             ^
2025-09-08T03:23:44,884   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,884     299 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T03:23:44,884         |                             ^
2025-09-08T03:23:44,895   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T03:23:44,895   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,895      90 |   if (&orig == NULL)
2025-09-08T03:23:44,895         |   ^~
2025-09-08T03:23:44,896   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T03:23:44,896   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,896     110 |   if (&rhs == NULL)
2025-09-08T03:23:44,896         |   ^~
2025-09-08T03:23:44,900   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T03:23:44,901   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,901     149 |   if (&name == NULL || &value == NULL
2025-09-08T03:23:44,901         |             ^
2025-09-08T03:23:44,901   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,901     149 |   if (&name == NULL || &value == NULL
2025-09-08T03:23:44,901         |                               ^
2025-09-08T03:23:44,901   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,901     150 |                     || &namespaceURI == NULL
2025-09-08T03:23:44,901         |                                      ^
2025-09-08T03:23:44,901   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,902     151 |                     || &prefix == NULL)
2025-09-08T03:23:44,902         |                                ^
2025-09-08T03:23:44,902   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T03:23:44,902   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,902     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:23:44,902         |               ^
2025-09-08T03:23:44,902   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,902     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:23:44,902         |                                 ^
2025-09-08T03:23:44,903   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,903   ./base/sbml/xml/XMLAttributes.cpp:558:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,903     558 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T03:23:44,903         |                                 ^
2025-09-08T03:23:44,904   ./base/sbml/xml/XMLAttributes.cpp:539:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,904     539 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T03:23:44,904         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T03:23:44,904   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,904   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,904     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T03:23:44,904         |               ^
2025-09-08T03:23:44,904   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,904     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T03:23:44,904         |                                 ^
2025-09-08T03:23:44,905   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,905   ./base/sbml/xml/XMLAttributes.cpp:701:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,905     701 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T03:23:44,905         |                                 ^
2025-09-08T03:23:44,905   ./base/sbml/xml/XMLAttributes.cpp:653:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,905     653 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T03:23:44,905         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T03:23:44,906   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,906   ./base/sbml/xml/XMLAttributes.cpp:819:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,906     819 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T03:23:44,906         |                                 ^
2025-09-08T03:23:44,906   ./base/sbml/xml/XMLAttributes.cpp:799:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,907     799 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T03:23:44,907         |                           ^
2025-09-08T03:23:44,907   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,907   ./base/sbml/xml/XMLAttributes.cpp:854:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,907     854 |   if (&triple == NULL) return false;
2025-09-08T03:23:44,907         |   ^~
2025-09-08T03:23:44,907   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,907   ./base/sbml/xml/XMLAttributes.cpp:943:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,907     943 |   if (&triple == NULL) return false;
2025-09-08T03:23:44,907         |   ^~
2025-09-08T03:23:44,908   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,908   ./base/sbml/xml/XMLAttributes.cpp:1035:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,908    1035 |   if (&triple == NULL) return false;
2025-09-08T03:23:44,908         |   ^~
2025-09-08T03:23:44,909   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,909   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,909    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T03:23:44,909         |                                                      ^
2025-09-08T03:23:44,909   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,909    1089 |   if ( index != -1 && &value != NULL)
2025-09-08T03:23:44,909         |                              ^
2025-09-08T03:23:44,909   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T03:23:44,909   ./base/sbml/xml/XMLAttributes.cpp:1125:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:44,910    1125 |   if (&triple == NULL) return false;
2025-09-08T03:23:44,910         |   ^~
2025-09-08T03:23:52,432   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T03:23:52,432   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T03:23:52,432     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T03:23:52,432         |                       ^
2025-09-08T03:23:52,432   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T03:23:52,432     322 |                     , const std::string& details
2025-09-08T03:23:52,433         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:23:52,433   ./base/sbml/xml/XMLError.cpp:382:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T03:23:52,434     382 |     if ( &details != NULL && !details.empty() )
2025-09-08T03:23:52,434         |                   ^
2025-09-08T03:23:52,434   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T03:23:52,434     322 |                     , const std::string& details
2025-09-08T03:23:52,434         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:23:52,434   ./base/sbml/xml/XMLError.cpp:403:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T03:23:52,434     403 |   if (&details == NULL)
2025-09-08T03:23:52,435         |                ^
2025-09-08T03:23:52,435   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T03:23:52,435     322 |                     , const std::string& details
2025-09-08T03:23:52,435         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:23:52,438   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T03:23:52,438   ./base/sbml/xml/XMLError.cpp:428:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:23:52,438     428 |   if (&orig == NULL)
2025-09-08T03:23:52,438         |             ^
2025-09-08T03:23:52,438   ./base/sbml/xml/XMLError.cpp:426:36: note: ‘orig’ declared here
2025-09-08T03:23:52,438     426 | XMLError::XMLError(const XMLError& orig)
2025-09-08T03:23:52,438         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:23:52,440   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T03:23:52,440   ./base/sbml/xml/XMLError.cpp:455:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:23:52,440     455 |   if (&rhs == NULL)
2025-09-08T03:23:52,441         |            ^
2025-09-08T03:23:52,441   ./base/sbml/xml/XMLError.cpp:453:37: note: ‘rhs’ declared here
2025-09-08T03:23:52,441     453 | XMLError::operator=(const XMLError& rhs)
2025-09-08T03:23:52,441         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T03:23:52,780   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T03:23:52,780   ./base/sbml/xml/XMLError.cpp:428:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:52,780     428 |   if (&orig == NULL)
2025-09-08T03:23:52,780         |   ^~
2025-09-08T03:23:52,780   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T03:23:52,781   ./base/sbml/xml/XMLError.cpp:455:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:52,781     455 |   if (&rhs == NULL)
2025-09-08T03:23:52,781         |   ^~
2025-09-08T03:23:52,783   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T03:23:52,783   ./base/sbml/xml/XMLError.cpp:403:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:52,783     403 |   if (&details == NULL)
2025-09-08T03:23:52,784         |   ^~
2025-09-08T03:23:52,784   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:52,784     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T03:23:52,784         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T03:23:52,784   ./base/sbml/xml/XMLError.cpp:382:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:52,784     382 |     if ( &details != NULL && !details.empty() )
2025-09-08T03:23:52,784         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T03:23:55,810   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:23:55,810      96 | struct Delete : public unary_function<XMLError*, void>
2025-09-08T03:23:55,811         |                        ^~~~~~~~~~~~~~
2025-09-08T03:23:55,811   In file included from /usr/include/c++/14/functional:49,
2025-09-08T03:23:55,811                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2025-09-08T03:23:55,811   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:23:55,811     117 |     struct unary_function
2025-09-08T03:23:55,811         |            ^~~~~~~~~~~~~~
2025-09-08T03:23:55,813   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2025-09-08T03:23:55,814   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2025-09-08T03:23:55,814     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T03:23:55,814         |              ^
2025-09-08T03:23:55,814   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2025-09-08T03:23:55,814     118 | XMLErrorLog::add (const XMLError& error)
2025-09-08T03:23:55,814         |                   ~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:23:56,063   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:56,064     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T03:23:56,064         |   ^~
2025-09-08T03:23:58,001   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T03:23:58,001   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T03:23:58,002      57 |   if (&filename == NULL) return;
2025-09-08T03:23:58,002         |                 ^
2025-09-08T03:23:58,002   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2025-09-08T03:23:58,002      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2025-09-08T03:23:58,002         |                               ~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T03:23:58,153   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T03:23:58,153   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:23:58,153      57 |   if (&filename == NULL) return;
2025-09-08T03:23:58,153         |   ^~
2025-09-08T03:24:06,083   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T03:24:06,083   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:24:06,083      76 |   if (&orig == NULL)
2025-09-08T03:24:06,084         |             ^
2025-09-08T03:24:06,084   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2025-09-08T03:24:06,084      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2025-09-08T03:24:06,084         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:06,086   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T03:24:06,086   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:24:06,087      93 |   if (&rhs == NULL)
2025-09-08T03:24:06,087         |            ^
2025-09-08T03:24:06,087   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2025-09-08T03:24:06,087      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2025-09-08T03:24:06,087         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:24:06,088   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T03:24:06,088   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:24:06,088     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:24:06,088         |            ^
2025-09-08T03:24:06,088   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2025-09-08T03:24:06,088     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T03:24:06,088         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:24:06,089   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T03:24:06,089     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:24:06,089         |                               ^
2025-09-08T03:24:06,089   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2025-09-08T03:24:06,089     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T03:24:06,089         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:06,104   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T03:24:06,104   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T03:24:06,104     322 |   if (&prefix == NULL) return std::string();
2025-09-08T03:24:06,104         |               ^
2025-09-08T03:24:06,104   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2025-09-08T03:24:06,105     320 | XMLNamespaces::getURI (const std::string& prefix) const
2025-09-08T03:24:06,105         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:06,106   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T03:24:06,106   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:24:06,106     348 |   if (&uri == NULL) return false;
2025-09-08T03:24:06,106         |            ^
2025-09-08T03:24:06,106   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2025-09-08T03:24:06,106     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2025-09-08T03:24:06,106         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:24:06,106   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T03:24:06,106   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T03:24:06,107     359 |   if (&prefix == NULL) return false;
2025-09-08T03:24:06,107         |               ^
2025-09-08T03:24:06,107   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2025-09-08T03:24:06,107     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2025-09-08T03:24:06,107         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:06,107   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T03:24:06,107   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:24:06,107     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T03:24:06,107         |            ^
2025-09-08T03:24:06,108   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2025-09-08T03:24:06,108     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T03:24:06,108         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:24:06,108   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T03:24:06,108     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T03:24:06,108         |                               ^
2025-09-08T03:24:06,108   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2025-09-08T03:24:06,108     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T03:24:06,108         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:06,500   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T03:24:06,500   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:06,500     322 |   if (&prefix == NULL) return std::string();
2025-09-08T03:24:06,500         |   ^~
2025-09-08T03:24:06,501   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T03:24:06,501   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:06,501     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T03:24:06,501         |            ^
2025-09-08T03:24:06,501   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:06,501     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T03:24:06,501         |                               ^
2025-09-08T03:24:06,502   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T03:24:06,502   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:06,502     348 |   if (&uri == NULL) return false;
2025-09-08T03:24:06,502         |   ^~
2025-09-08T03:24:06,502   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T03:24:06,503   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:06,503     359 |   if (&prefix == NULL) return false;
2025-09-08T03:24:06,503         |   ^~
2025-09-08T03:24:06,508   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T03:24:06,509   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:06,509      76 |   if (&orig == NULL)
2025-09-08T03:24:06,509         |   ^~
2025-09-08T03:24:06,509   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T03:24:06,509   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:06,509      93 |   if (&rhs == NULL)
2025-09-08T03:24:06,509         |   ^~
2025-09-08T03:24:06,511   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T03:24:06,512   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:06,512     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:24:06,512         |            ^
2025-09-08T03:24:06,512   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:06,512     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:24:06,512         |                               ^
2025-09-08T03:24:10,907   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T03:24:10,908   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:24:10,908     197 |   if (&rhs == NULL)
2025-09-08T03:24:10,908         |            ^
2025-09-08T03:24:10,908   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2025-09-08T03:24:10,908     195 | XMLNode::operator=(const XMLNode& rhs)
2025-09-08T03:24:10,908         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T03:24:10,909   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T03:24:10,910   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:24:10,910     230 |   if (&(node) == NULL)
2025-09-08T03:24:10,910         |               ^
2025-09-08T03:24:10,910   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2025-09-08T03:24:10,910     226 | XMLNode::addChild (const XMLNode& node)
2025-09-08T03:24:10,910         |                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:10,910   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T03:24:10,911   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T03:24:10,911     267 |   if (&(node) == NULL)
2025-09-08T03:24:10,911         |               ^
2025-09-08T03:24:10,911   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2025-09-08T03:24:10,911     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2025-09-08T03:24:10,911         |                                       ~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:10,916   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T03:24:10,916   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:10,916     413 |   if (&name == NULL) return -1;
2025-09-08T03:24:10,917         |             ^
2025-09-08T03:24:10,917   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2025-09-08T03:24:10,917     411 | XMLNode::getIndex (const std::string& name) const
2025-09-08T03:24:10,917         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:10,917   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T03:24:10,918   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2025-09-08T03:24:10,918     435 |   if (&other == NULL) return false;
2025-09-08T03:24:10,918         |              ^
2025-09-08T03:24:10,918   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2025-09-08T03:24:10,918     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2025-09-08T03:24:10,918         |                 ~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:24:10,924   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T03:24:10,924   ./base/sbml/xml/XMLNode.cpp:505:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:24:10,924     505 |   if (&stream == NULL) return;
2025-09-08T03:24:10,924         |               ^
2025-09-08T03:24:10,924   ./base/sbml/xml/XMLNode.cpp:503:34: note: ‘stream’ declared here
2025-09-08T03:24:10,924     503 | XMLNode::write (XMLOutputStream& stream) const
2025-09-08T03:24:10,925         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:10,928   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T03:24:10,928   ./base/sbml/xml/XMLNode.cpp:575:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2025-09-08T03:24:10,928     575 |   if (&xmlstr == NULL) return NULL;
2025-09-08T03:24:10,928         |               ^
2025-09-08T03:24:10,928   ./base/sbml/xml/XMLNode.cpp:573:61: note: ‘xmlstr’ declared here
2025-09-08T03:24:10,928     573 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2025-09-08T03:24:10,928         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:11,401   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T03:24:11,401   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:11,401     413 |   if (&name == NULL) return -1;
2025-09-08T03:24:11,401         |   ^~
2025-09-08T03:24:11,401   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T03:24:11,401   ./base/sbml/xml/XMLNode.cpp:505:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:11,402     505 |   if (&stream == NULL) return;
2025-09-08T03:24:11,402         |   ^~
2025-09-08T03:24:11,419   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T03:24:11,419   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:11,419     197 |   if (&rhs == NULL)
2025-09-08T03:24:11,420         |   ^~
2025-09-08T03:24:11,421   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T03:24:11,421   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:11,421     230 |   if (&(node) == NULL)
2025-09-08T03:24:11,421         |   ^~
2025-09-08T03:24:11,423   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T03:24:11,423   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:11,423     267 |   if (&(node) == NULL)
2025-09-08T03:24:11,423         |   ^~
2025-09-08T03:24:11,426   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T03:24:11,426   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:11,426     435 |   if (&other == NULL) return false;
2025-09-08T03:24:11,426         |   ^~
2025-09-08T03:24:11,428   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T03:24:11,428   ./base/sbml/xml/XMLNode.cpp:575:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:11,428     575 |   if (&xmlstr == NULL) return NULL;
2025-09-08T03:24:11,429         |   ^~
2025-09-08T03:24:17,777   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T03:24:17,777   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T03:24:17,777     220 |   if (&stream == NULL)
2025-09-08T03:24:17,777         |               ^
2025-09-08T03:24:17,777   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2025-09-08T03:24:17,778     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2025-09-08T03:24:17,778         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:17,779   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T03:24:17,779   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:17,779     236 |   if(&name == NULL) return;
2025-09-08T03:24:17,779         |            ^
2025-09-08T03:24:17,780   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2025-09-08T03:24:17,780     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2025-09-08T03:24:17,780         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:17,782   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T03:24:17,783   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:24:17,783     270 |   if(&triple == NULL) return;
2025-09-08T03:24:17,783         |              ^
2025-09-08T03:24:17,783   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2025-09-08T03:24:17,783     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2025-09-08T03:24:17,783         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:17,785   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T03:24:17,786   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:17,786     313 |   if (&name == NULL) return;
2025-09-08T03:24:17,786         |             ^
2025-09-08T03:24:17,786   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2025-09-08T03:24:17,786     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2025-09-08T03:24:17,786         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:17,787   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T03:24:17,787   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:24:17,787     344 |   if (&triple == NULL) return;
2025-09-08T03:24:17,787         |               ^
2025-09-08T03:24:17,787   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2025-09-08T03:24:17,787     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2025-09-08T03:24:17,788         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:17,788   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T03:24:17,789   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:17,789     374 |   if (&name == NULL) return;
2025-09-08T03:24:17,789         |             ^
2025-09-08T03:24:17,789   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2025-09-08T03:24:17,789     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2025-09-08T03:24:17,789         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:17,790   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T03:24:17,790   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:24:17,791     409 |   if (&triple == NULL) return;
2025-09-08T03:24:17,791         |               ^
2025-09-08T03:24:17,791   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2025-09-08T03:24:17,791     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2025-09-08T03:24:17,791         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:17,792   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T03:24:17,792   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:17,793     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T03:24:17,793         |              ^
2025-09-08T03:24:17,793   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2025-09-08T03:24:17,793     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T03:24:17,793         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:17,793   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:24:17,793     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T03:24:17,793         |                                ^
2025-09-08T03:24:17,794   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2025-09-08T03:24:17,794     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T03:24:17,794         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:24:17,798   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T03:24:17,798   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:17,798     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,798         |             ^
2025-09-08T03:24:17,798   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2025-09-08T03:24:17,798     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T03:24:17,799         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:17,799   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:24:17,799     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,799         |                               ^
2025-09-08T03:24:17,799   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2025-09-08T03:24:17,799     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T03:24:17,799         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T03:24:17,800   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T03:24:17,800   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:24:17,800     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:17,800         |               ^
2025-09-08T03:24:17,800   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2025-09-08T03:24:17,801     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T03:24:17,801         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:17,801   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:24:17,801     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:17,801         |                                 ^
2025-09-08T03:24:17,801   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2025-09-08T03:24:17,801     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T03:24:17,801         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T03:24:17,801   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T03:24:17,802   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:17,802     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,802         |             ^
2025-09-08T03:24:17,802   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2025-09-08T03:24:17,802     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T03:24:17,802         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:17,802   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:24:17,802     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,802         |                               ^
2025-09-08T03:24:17,802   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2025-09-08T03:24:17,803     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T03:24:17,803         |                                                           ~~~~~~~~~~~~~~^~~~~
2025-09-08T03:24:17,804   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T03:24:17,804   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:17,804     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,804         |             ^
2025-09-08T03:24:17,805   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2025-09-08T03:24:17,805     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T03:24:17,805         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:17,805   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:24:17,805     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,805         |                               ^
2025-09-08T03:24:17,805   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2025-09-08T03:24:17,805     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T03:24:17,805         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T03:24:17,807   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T03:24:17,807   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:17,807     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,807         |             ^
2025-09-08T03:24:17,807   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2025-09-08T03:24:17,807     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T03:24:17,807         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:17,808   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:24:17,808     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,808         |                               ^
2025-09-08T03:24:17,808   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2025-09-08T03:24:17,808     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T03:24:17,808         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T03:24:17,809   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T03:24:17,809   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:24:17,809     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:17,809         |               ^
2025-09-08T03:24:17,809   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2025-09-08T03:24:17,809     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T03:24:17,810         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:17,810   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:24:17,810     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:17,810         |                                 ^
2025-09-08T03:24:17,810   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2025-09-08T03:24:17,810     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T03:24:17,810         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T03:24:17,810   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T03:24:17,810   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:17,810     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,811         |             ^
2025-09-08T03:24:17,811   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2025-09-08T03:24:17,811     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T03:24:17,811         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:17,811   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:24:17,811     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:17,811         |                               ^
2025-09-08T03:24:17,811   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2025-09-08T03:24:17,811     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T03:24:17,812         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:24:17,812   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T03:24:17,812   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:24:17,812     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:17,813         |               ^
2025-09-08T03:24:17,813   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2025-09-08T03:24:17,813     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2025-09-08T03:24:17,813         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:17,813   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T03:24:17,813     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:17,813         |                                 ^
2025-09-08T03:24:17,813   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2025-09-08T03:24:17,813     734 |                                  , const unsigned int&  value )
2025-09-08T03:24:17,814         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:24:18,203   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T03:24:18,204   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,204     236 |   if(&name == NULL) return;
2025-09-08T03:24:18,204         |   ^~
2025-09-08T03:24:18,204   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T03:24:18,204   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,204     313 |   if (&name == NULL) return;
2025-09-08T03:24:18,204         |   ^~
2025-09-08T03:24:18,204   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T03:24:18,204   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,205     374 |   if (&name == NULL) return;
2025-09-08T03:24:18,205         |   ^~
2025-09-08T03:24:18,205   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T03:24:18,205   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,205     270 |   if(&triple == NULL) return;
2025-09-08T03:24:18,205         |   ^~
2025-09-08T03:24:18,205   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T03:24:18,205   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,205     344 |   if (&triple == NULL) return;
2025-09-08T03:24:18,205         |   ^~
2025-09-08T03:24:18,206   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T03:24:18,206   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,206     409 |   if (&triple == NULL) return;
2025-09-08T03:24:18,206         |   ^~
2025-09-08T03:24:18,206   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T03:24:18,206   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,206     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:18,206         |               ^
2025-09-08T03:24:18,206   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,206     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:18,207         |                                 ^
2025-09-08T03:24:18,207   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T03:24:18,207   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,207     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:18,207         |               ^
2025-09-08T03:24:18,207   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,207     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:18,207         |                                 ^
2025-09-08T03:24:18,207   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T03:24:18,207   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,208     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:18,208         |               ^
2025-09-08T03:24:18,208   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,208     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T03:24:18,208         |                                 ^
2025-09-08T03:24:18,208   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T03:24:18,208   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,208     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T03:24:18,208         |              ^
2025-09-08T03:24:18,208   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,208     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T03:24:18,209         |                                ^
2025-09-08T03:24:18,209   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T03:24:18,209   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,209     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,209         |             ^
2025-09-08T03:24:18,209   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,209     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,209         |                               ^
2025-09-08T03:24:18,209   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T03:24:18,209   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,210     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,210         |             ^
2025-09-08T03:24:18,210   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,210     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,210         |                               ^
2025-09-08T03:24:18,210   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T03:24:18,210   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,210     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,210         |             ^
2025-09-08T03:24:18,210   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,210     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,211         |                               ^
2025-09-08T03:24:18,211   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T03:24:18,211   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,211     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,211         |             ^
2025-09-08T03:24:18,211   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,211     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,211         |                               ^
2025-09-08T03:24:18,211   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T03:24:18,211   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,211     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,212         |             ^
2025-09-08T03:24:18,212   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,212     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T03:24:18,212         |                               ^
2025-09-08T03:24:18,214   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T03:24:18,214   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:18,214     220 |   if (&stream == NULL)
2025-09-08T03:24:18,214         |   ^~
2025-09-08T03:24:24,559   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T03:24:24,559   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2025-09-08T03:24:24,559     132 |   if (&chars == NULL)
2025-09-08T03:24:24,559         |              ^
2025-09-08T03:24:24,560   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2025-09-08T03:24:24,560     123 | XMLToken::XMLToken (  const std::string&  chars
2025-09-08T03:24:24,560         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:24:24,562   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T03:24:24,562   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:24:24,562     156 |   if (&orig == NULL)
2025-09-08T03:24:24,562         |             ^
2025-09-08T03:24:24,562   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2025-09-08T03:24:24,562     154 | XMLToken::XMLToken(const XMLToken& orig)
2025-09-08T03:24:24,562         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:24,565   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T03:24:24,565   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:24:24,565     195 |   if (&rhs == NULL)
2025-09-08T03:24:24,565         |            ^
2025-09-08T03:24:24,565   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2025-09-08T03:24:24,565     193 | XMLToken::operator=(const XMLToken& rhs)
2025-09-08T03:24:24,565         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T03:24:24,568   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T03:24:24,568   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T03:24:24,568     312 |         if(&attributes == NULL)
2025-09-08T03:24:24,568         |                        ^
2025-09-08T03:24:24,568   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2025-09-08T03:24:24,568     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2025-09-08T03:24:24,569         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T03:24:24,573   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T03:24:24,573   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2025-09-08T03:24:24,573     783 |         if(&namespaces == NULL)
2025-09-08T03:24:24,573         |                        ^
2025-09-08T03:24:24,573   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2025-09-08T03:24:24,574     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2025-09-08T03:24:24,574         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T03:24:24,574   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T03:24:24,574   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:24:24,574     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:24:24,574         |            ^
2025-09-08T03:24:24,574   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2025-09-08T03:24:24,574     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T03:24:24,574         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:24:24,574   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T03:24:24,575     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:24:24,575         |                               ^
2025-09-08T03:24:24,575   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2025-09-08T03:24:24,575     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T03:24:24,575         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:24,577   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T03:24:24,577   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T03:24:24,578    1058 |         if(&triple == NULL)
2025-09-08T03:24:24,578         |                    ^
2025-09-08T03:24:24,578   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2025-09-08T03:24:24,578    1055 | XMLToken::setTriple(const XMLTriple& triple)
2025-09-08T03:24:24,578         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:24,809   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T03:24:24,809   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:24,809     312 |         if(&attributes == NULL)
2025-09-08T03:24:24,809         |         ^~
2025-09-08T03:24:24,811   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T03:24:24,811   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:24,811     783 |         if(&namespaces == NULL)
2025-09-08T03:24:24,811         |         ^~
2025-09-08T03:24:24,811   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T03:24:24,811   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:24,811     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:24:24,811         |            ^
2025-09-08T03:24:24,811   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:24,812     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T03:24:24,812         |                               ^
2025-09-08T03:24:24,812   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T03:24:24,812   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:24,812    1058 |         if(&triple == NULL)
2025-09-08T03:24:24,812         |         ^~
2025-09-08T03:24:24,828   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T03:24:24,828   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:24,828     132 |   if (&chars == NULL)
2025-09-08T03:24:24,828         |   ^~
2025-09-08T03:24:24,829   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T03:24:24,829   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:24,829     156 |   if (&orig == NULL)
2025-09-08T03:24:24,829         |   ^~
2025-09-08T03:24:24,830   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T03:24:24,830   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:24,830     195 |   if (&rhs == NULL)
2025-09-08T03:24:24,830         |   ^~
2025-09-08T03:24:25,590   ./base/sbml/xml/XMLToken.cpp: In function ‘int XMLToken_append(XMLToken_t*, const char*)’:
2025-09-08T03:24:25,590   ./base/sbml/xml/XMLToken.cpp:1367:25: warning: ‘this’ pointer is null [-Wnonnull]
2025-09-08T03:24:25,590    1367 |     return token->append(text);
2025-09-08T03:24:25,590         |            ~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:25,590   ./base/sbml/xml/XMLToken.cpp:245:1: note: in a call to non-static member function ‘int XMLToken::append(const std::string&)’
2025-09-08T03:24:25,591     245 | XMLToken::append (const std::string& chars)
2025-09-08T03:24:25,591         | ^~~~~~~~
2025-09-08T03:24:29,588   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T03:24:29,589   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:24:29,589     188 |   if (&element == NULL) return;
2025-09-08T03:24:29,589         |                ^
2025-09-08T03:24:29,589   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2025-09-08T03:24:29,589     186 | XMLTokenizer::startElement (const XMLToken& element)
2025-09-08T03:24:29,589         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:24:29,589   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T03:24:29,590   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T03:24:29,590     234 |   else if (&element != NULL)
2025-09-08T03:24:29,590         |                     ^
2025-09-08T03:24:29,590   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2025-09-08T03:24:29,590     220 | XMLTokenizer::endElement (const XMLToken& element)
2025-09-08T03:24:29,590         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:24:29,590   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T03:24:29,590   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2025-09-08T03:24:29,590     247 |   if (&data == NULL) return;
2025-09-08T03:24:29,591         |             ^
2025-09-08T03:24:29,591   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2025-09-08T03:24:29,591     245 | XMLTokenizer::characters (const XMLToken& data)
2025-09-08T03:24:29,591         |                           ~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:29,862   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T03:24:29,862   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:29,862     188 |   if (&element == NULL) return;
2025-09-08T03:24:29,863         |   ^~
2025-09-08T03:24:29,863   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T03:24:29,863   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:29,863     234 |   else if (&element != NULL)
2025-09-08T03:24:29,863         |        ^~
2025-09-08T03:24:29,863   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T03:24:29,863   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:29,863     247 |   if (&data == NULL) return;
2025-09-08T03:24:29,863         |   ^~
2025-09-08T03:24:32,918   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T03:24:32,919   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T03:24:32,919      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T03:24:32,919         |              ^
2025-09-08T03:24:32,919   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2025-09-08T03:24:32,919      58 | XMLTriple::XMLTriple (  const std::string&  name
2025-09-08T03:24:32,919         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:32,919   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T03:24:32,919      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T03:24:32,920         |                                ^
2025-09-08T03:24:32,920   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2025-09-08T03:24:32,920      59 |                       , const std::string&  uri
2025-09-08T03:24:32,920         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:24:32,920   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T03:24:32,920      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T03:24:32,920         |                                                     ^
2025-09-08T03:24:32,920   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2025-09-08T03:24:32,920      60 |                       , const std::string&  prefix )
2025-09-08T03:24:32,920         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T03:24:32,921   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T03:24:32,921   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2025-09-08T03:24:32,921      81 |   if (&triplet == NULL)
2025-09-08T03:24:32,921         |                ^
2025-09-08T03:24:32,921   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2025-09-08T03:24:32,921      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2025-09-08T03:24:32,922         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T03:24:32,924   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T03:24:32,924   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T03:24:32,924     117 |   if (&orig == NULL)
2025-09-08T03:24:32,924         |             ^
2025-09-08T03:24:32,925   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2025-09-08T03:24:32,925     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2025-09-08T03:24:32,925         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:24:32,925   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T03:24:32,926   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T03:24:32,926     136 |   if (&rhs == NULL)
2025-09-08T03:24:32,926         |            ^
2025-09-08T03:24:32,926   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2025-09-08T03:24:32,926     134 | XMLTriple::operator=(const XMLTriple& rhs)
2025-09-08T03:24:32,926         |                      ~~~~~~~~~~~~~~~~~^~~
2025-09-08T03:24:33,087   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T03:24:33,087   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:33,087      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T03:24:33,087         |       ~~~~~~~^~~~~~~~
2025-09-08T03:24:33,087   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:33,087      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T03:24:33,087         |                          ~~~~~~^~~~~~~~
2025-09-08T03:24:33,087   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:33,088      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T03:24:33,088         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T03:24:33,088   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T03:24:33,088   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:33,088     117 |   if (&orig == NULL)
2025-09-08T03:24:33,088         |   ^~
2025-09-08T03:24:33,088   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T03:24:33,088   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:33,088     136 |   if (&rhs == NULL)
2025-09-08T03:24:33,088         |   ^~
2025-09-08T03:24:33,089   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T03:24:33,089   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2025-09-08T03:24:33,089      81 |   if (&triplet == NULL)
2025-09-08T03:24:33,089         |   ^~
2025-09-08T03:24:39,215   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T03:24:39,215   !!

2025-09-08T03:24:39,215           ********************************************************************************
2025-09-08T03:24:39,215           Please avoid running ``setup.py`` directly.
2025-09-08T03:24:39,215           Instead, use pypa/build, pypa/installer or other
2025-09-08T03:24:39,215           standards-based tools.

2025-09-08T03:24:39,216           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T03:24:39,216           or your builds will no longer be supported.

2025-09-08T03:24:39,216           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T03:24:39,216           ********************************************************************************

2025-09-08T03:24:39,216   !!
2025-09-08T03:24:39,216     self.initialize_options()
2025-09-08T03:24:56,480   Building wheel for python-libsbml (setup.py): finished with status 'done'
2025-09-08T03:24:56,804   Created wheel for python-libsbml: filename=python_libsbml-5.10.0-cp313-cp313-linux_armv7l.whl size=32378604 sha256=5a08e55a4cf51bb07abeb527f2cb4cb54b7cb171d894bea2f34996775f4ef351
2025-09-08T03:24:56,804   Stored in directory: /tmp/pip-ephem-wheel-cache-vnbyr_os/wheels/52/fe/0e/625b9027336142dd858677496a3f0fe85ce7faf5d397a2142b
2025-09-08T03:24:56,812 Successfully built python-libsbml
2025-09-08T03:24:56,878 Removed build tracker: '/tmp/pip-build-tracker-b6qhcn02'