2025-09-08T04:03:48,737 Created temporary directory: /tmp/pip-build-tracker-gc71atsy 2025-09-08T04:03:48,738 Initialized build tracking at /tmp/pip-build-tracker-gc71atsy 2025-09-08T04:03:48,738 Created build tracker: /tmp/pip-build-tracker-gc71atsy 2025-09-08T04:03:48,738 Entered build tracker: /tmp/pip-build-tracker-gc71atsy 2025-09-08T04:03:48,738 Created temporary directory: /tmp/pip-wheel-vzljjq19 2025-09-08T04:03:48,741 Created temporary directory: /tmp/pip-ephem-wheel-cache-wd4zguj7 2025-09-08T04:03:48,800 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T04:03:48,802 2 location(s) to search for versions of scikit-bio: 2025-09-08T04:03:48,802 * https://pypi.org/simple/scikit-bio/ 2025-09-08T04:03:48,802 * https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T04:03:48,803 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2025-09-08T04:03:48,803 Getting page https://pypi.org/simple/scikit-bio/ 2025-09-08T04:03:48,804 Found index url https://pypi.org/simple/ 2025-09-08T04:03:48,876 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2025-09-08T04:03:48,883 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2025-09-08T04:03:48,883 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2025-09-08T04:03:48,884 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2025-09-08T04:03:48,884 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2025-09-08T04:03:48,884 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2025-09-08T04:03:48,884 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2025-09-08T04:03:48,885 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2025-09-08T04:03:48,885 Found link 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https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2025-09-08T04:03:48,887 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2025-09-08T04:03:48,887 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2025-09-08T04:03:48,887 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2025-09-08T04:03:48,887 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2025-09-08T04:03:48,888 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2025-09-08T04:03:48,888 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2025-09-08T04:03:48,888 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2025-09-08T04:03:48,888 Found link https://files.pythonhosted.org/packages/9d/77/531cf69c99cb398c5abf8545259b88ee256bfdb72e5972bcfdbcb9942751/scikit-bio-0.6.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.0 2025-09-08T04:03:48,889 Found link https://files.pythonhosted.org/packages/12/6b/1a01f3df88503d9a11916972f0b0c2aed13d516f159336b4bdcfcd04098a/scikit-bio-0.6.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.1 2025-09-08T04:03:48,889 Found link https://files.pythonhosted.org/packages/29/28/07326aa931c67d491d3053e2875b6c8f2904e661d9ab7c2840c3ae6b3780/scikit-bio-0.6.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.2 2025-09-08T04:03:48,889 Found link https://files.pythonhosted.org/packages/65/59/31e499edc0d045acab799b7117130e9c9de22371be57ac311f2f0b235dc4/scikit-bio-0.6.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.3 2025-09-08T04:03:48,889 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/59/8b/f90ee0325c7f59573bdf8d4a5a5717ca710f067a081fd46f3768600a200d/scikit_bio-0.7.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,889 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/57/c6/0864476e63935459eb4d474f210e70ca1b0aa9689bb1beccbeae582587ce/scikit_bio-0.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,889 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/ca/087675f3fd6608142be8c53e6875a1a730e0fa1250a85421677570445839/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,890 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c8/69/da203001d9a0d4f2dc14426617e5eed76c9ff059f6c2a94023bf48e204cb/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,890 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/45/97/3b928b1f075a6033326244e125f0e3a518fe75c17278359d1835ca4ccb24/scikit_bio-0.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,890 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/66/5f238ff8fa25080d5baf82287297bfd1e6dbeab45ef3ff1b0f6e1a7c017e/scikit_bio-0.7.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,890 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f9/8b/8ef6e40a818067bdaf57fa779eadbc8ef73f333dbd50fb09daeae13de1f2/scikit_bio-0.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,890 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f0/66/6cb6e9ba1e67f65a27b34fcd33b457cb0fea73f93dc184ea1bf38562f012/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,890 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/27/e359f131018cf988f1e4f5e7380db7db43ba4202ffc9ba9e8f6cfb1988f5/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,890 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/db/99/6b0ce81f81e2cfe06c899455b149e7f8393cd3ba9a8905efe18c36894420/scikit_bio-0.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,891 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/43/9b/bf339d439568a4fa0ab6e7e545c4487b1cf86e6245f98be0d922f4677ddc/scikit_bio-0.7.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,891 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1d/e9/7a5dd2e04bbd361907f5a1942fa4b6aeecfa453801f4c047c55b51036df2/scikit_bio-0.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,891 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/19/4b/b63123cf09c3375fa90cbfc02febf32cc20429a49c03d71f37febed7c52d/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,891 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f5/02/b178ca48305a230e080732dd02233e0824b1a9b41b273acf2444de116be2/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,891 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5f/a8/199cafe05bb77bf274f0a3db8f5199f4b2966db37589f9e5ec6a212c0b9c/scikit_bio-0.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,891 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d4/31/b943fcf7d4579b4751002ad9a48e62e9f0c7db542dd440f7e3e82f50f58b/scikit_bio-0.7.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,891 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e7/af/5f3452f0dce0f0a3c7ccb9f067e410b50a8d188c4fb56426f8785317333d/scikit_bio-0.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,892 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7d/20/ef1d2a8accb946cc31b5b987a46d197f69d1e89bab76b5e9cb4235a355f9/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,892 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/46/3f05eedb58e13c21f5ab7496e9735da2f008aa66038b268ea46138a3e48d/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,892 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/40/e9/2f7d72ef933e9328b929295ada98ad2c5fbdc5b3c6bd2f4d886f14d4f90a/scikit_bio-0.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,892 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b5/fa/3a7770c445111c6b957aba701887f22506faef8145965a6b9d2816cfd896/scikit_bio-0.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,892 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4e/07/e2a29ccbb31208c98ff2c7b61b00614885f781474891ebf249d85495e238/scikit_bio-0.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,892 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/89/15/829f7da8e5083f4d2e3dd1ef24faa6b32da2bf492547bd6d385e92fda127/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,892 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4a/34/687f9e4dc73e39a56277e2aa900577fccb3c99ef28a5acc5fc258028e2ac/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,893 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6c/a5/75fd40c8bf70836216fffe57bdd80c78959d5cc21c23927ada892b246f3d/scikit_bio-0.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-09-08T04:03:48,893 Found link https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9), version: 0.7.0 2025-09-08T04:03:48,894 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T04:03:48,894 Getting page https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T04:03:48,895 Found index url https://www.piwheels.org/simple/ 2025-09-08T04:03:49,215 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2025-09-08T04:03:49,230 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv6l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,230 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv7l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,231 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,231 Skipping link: No binaries permitted for scikit-bio: 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https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,233 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,234 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,234 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv6l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,234 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv7l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,235 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,235 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,235 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,236 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,236 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,236 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,236 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,237 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,237 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv6l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,237 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv7l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,237 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,237 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,238 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,238 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,238 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,238 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,238 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,238 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,238 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,238 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-09-08T04:03:49,239 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2025-09-08T04:03:49,239 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2025-09-08T04:03:49,263 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2025-09-08T04:03:49,264 Collecting scikit-bio==0.4.2 2025-09-08T04:03:49,265 Created temporary directory: /tmp/pip-unpack-8oxrkzdv 2025-09-08T04:03:49,409 Downloading scikit-bio-0.4.2.tar.gz (8.1 MB) 2025-09-08T04:03:50,956 Added scikit-bio==0.4.2 from https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-gc71atsy' 2025-09-08T04:03:50,957 Running setup.py (path:/tmp/pip-wheel-vzljjq19/scikit-bio_36291d2c073242e4a11b4be00b3290e2/setup.py) egg_info for package scikit-bio 2025-09-08T04:03:50,957 Created temporary directory: /tmp/pip-pip-egg-info-j38cvbdn 2025-09-08T04:03:50,958 Preparing metadata (setup.py): started 2025-09-08T04:03:50,958 Running command python setup.py egg_info 2025-09-08T04:03:51,777 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T04:03:51,777 !! 2025-09-08T04:03:51,777 ******************************************************************************** 2025-09-08T04:03:51,777 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T04:03:51,777 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T04:03:51,777 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T04:03:51,778 or your builds will no longer be supported. 2025-09-08T04:03:51,778 ******************************************************************************** 2025-09-08T04:03:51,778 !! 2025-09-08T04:03:51,778 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T04:03:52,092 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T04:03:52,092 !! 2025-09-08T04:03:52,093 ******************************************************************************** 2025-09-08T04:03:52,093 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T04:03:52,093 License :: OSI Approved :: BSD License 2025-09-08T04:03:52,093 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T04:03:52,093 ******************************************************************************** 2025-09-08T04:03:52,093 !! 2025-09-08T04:03:52,093 self._finalize_license_expression() 2025-09-08T04:03:52,167 running egg_info 2025-09-08T04:03:52,242 creating /tmp/pip-pip-egg-info-j38cvbdn/scikit_bio.egg-info 2025-09-08T04:03:52,242 writing /tmp/pip-pip-egg-info-j38cvbdn/scikit_bio.egg-info/PKG-INFO 2025-09-08T04:03:52,244 writing dependency_links to /tmp/pip-pip-egg-info-j38cvbdn/scikit_bio.egg-info/dependency_links.txt 2025-09-08T04:03:52,245 writing requirements to /tmp/pip-pip-egg-info-j38cvbdn/scikit_bio.egg-info/requires.txt 2025-09-08T04:03:52,245 writing top-level names to /tmp/pip-pip-egg-info-j38cvbdn/scikit_bio.egg-info/top_level.txt 2025-09-08T04:03:52,245 writing manifest file '/tmp/pip-pip-egg-info-j38cvbdn/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T04:03:52,739 reading manifest file '/tmp/pip-pip-egg-info-j38cvbdn/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T04:03:52,740 reading manifest template 'MANIFEST.in' 2025-09-08T04:03:52,764 no previously-included directories found matching 'doc/build' 2025-09-08T04:03:52,765 no previously-included directories found matching 'doc/source/generated' 2025-09-08T04:03:52,768 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-09-08T04:03:52,771 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-09-08T04:03:52,774 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-09-08T04:03:52,777 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2025-09-08T04:03:52,777 adding license file 'COPYING.txt' 2025-09-08T04:03:52,803 writing manifest file '/tmp/pip-pip-egg-info-j38cvbdn/scikit_bio.egg-info/SOURCES.txt' 2025-09-08T04:03:52,941 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T04:03:52,946 Source in /tmp/pip-wheel-vzljjq19/scikit-bio_36291d2c073242e4a11b4be00b3290e2 has version 0.4.2, which satisfies requirement scikit-bio==0.4.2 from https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz 2025-09-08T04:03:52,946 Removed scikit-bio==0.4.2 from https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-gc71atsy' 2025-09-08T04:03:52,955 Created temporary directory: /tmp/pip-unpack-dnxcsn1r 2025-09-08T04:03:52,955 Created temporary directory: /tmp/pip-unpack-z06jq5cq 2025-09-08T04:03:52,956 Building wheels for collected packages: scikit-bio 2025-09-08T04:03:52,957 Created temporary directory: /tmp/pip-wheel-azw6vdap 2025-09-08T04:03:52,957 DEPRECATION: Building 'scikit-bio' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'scikit-bio'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T04:03:52,959 Building wheel for scikit-bio (setup.py): started 2025-09-08T04:03:52,959 Destination directory: /tmp/pip-wheel-azw6vdap 2025-09-08T04:03:52,959 Running command python setup.py bdist_wheel 2025-09-08T04:03:53,775 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T04:03:53,775 !! 2025-09-08T04:03:53,776 ******************************************************************************** 2025-09-08T04:03:53,776 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T04:03:53,776 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T04:03:53,776 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T04:03:53,776 or your builds will no longer be supported. 2025-09-08T04:03:53,776 ******************************************************************************** 2025-09-08T04:03:53,776 !! 2025-09-08T04:03:53,776 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T04:03:54,096 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T04:03:54,096 !! 2025-09-08T04:03:54,096 ******************************************************************************** 2025-09-08T04:03:54,096 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T04:03:54,096 License :: OSI Approved :: BSD License 2025-09-08T04:03:54,097 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T04:03:54,097 ******************************************************************************** 2025-09-08T04:03:54,097 !! 2025-09-08T04:03:54,097 self._finalize_license_expression() 2025-09-08T04:03:54,097 running bdist_wheel 2025-09-08T04:03:54,389 running build 2025-09-08T04:03:54,389 running build_py 2025-09-08T04:03:54,466 creating build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T04:03:54,467 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T04:03:54,467 copying skbio/test.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T04:03:54,468 copying skbio/_base.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T04:03:54,468 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio 2025-09-08T04:03:54,469 creating build/lib.linux-armv7l-cpython-313/benchmarks 2025-09-08T04:03:54,469 copying benchmarks/benchmarks.py -> build/lib.linux-armv7l-cpython-313/benchmarks 2025-09-08T04:03:54,470 copying benchmarks/__init__.py -> build/lib.linux-armv7l-cpython-313/benchmarks 2025-09-08T04:03:54,471 creating build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T04:03:54,471 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T04:03:54,471 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T04:03:54,472 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T04:03:54,473 copying skbio/util/_metadata_repr.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T04:03:54,473 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T04:03:54,474 copying skbio/util/_decorator.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T04:03:54,474 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util 2025-09-08T04:03:54,475 creating build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T04:03:54,475 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T04:03:54,476 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T04:03:54,477 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T04:03:54,477 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T04:03:54,478 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree 2025-09-08T04:03:54,479 creating build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T04:03:54,479 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T04:03:54,479 copying skbio/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T04:03:54,480 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tests 2025-09-08T04:03:54,481 creating build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T04:03:54,481 copying skbio/stats/power.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T04:03:54,482 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T04:03:54,482 copying skbio/stats/composition.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T04:03:54,483 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T04:03:54,483 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T04:03:54,484 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats 2025-09-08T04:03:54,485 creating build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,485 copying skbio/sequence/distance.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,486 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,486 copying skbio/sequence/_rna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,487 copying skbio/sequence/_repr.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,487 copying skbio/sequence/_protein.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,488 copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,489 copying skbio/sequence/_grammared_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,489 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,490 copying skbio/sequence/_dna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,490 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence 2025-09-08T04:03:54,491 creating build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T04:03:54,491 copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T04:03:54,492 copying skbio/io/registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T04:03:54,493 copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T04:03:54,493 copying skbio/io/_iosources.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T04:03:54,494 copying skbio/io/_fileobject.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T04:03:54,494 copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T04:03:54,495 copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io 2025-09-08T04:03:54,496 creating build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T04:03:54,496 copying skbio/diversity/_util.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T04:03:54,496 copying skbio/diversity/_driver.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T04:03:54,497 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity 2025-09-08T04:03:54,498 creating build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T04:03:54,498 copying skbio/alignment/_tabular_msa.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T04:03:54,499 copying skbio/alignment/_repr.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T04:03:54,499 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T04:03:54,500 copying skbio/alignment/_indexing.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T04:03:54,500 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment 2025-09-08T04:03:54,501 creating build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T04:03:54,502 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T04:03:54,502 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T04:03:54,503 copying skbio/util/tests/test_decorator.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T04:03:54,503 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/util/tests 2025-09-08T04:03:54,504 creating build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T04:03:54,504 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T04:03:54,505 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T04:03:54,505 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T04:03:54,506 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/tree/tests 2025-09-08T04:03:54,507 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T04:03:54,507 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T04:03:54,508 copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T04:03:54,508 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T04:03:54,509 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T04:03:54,509 copying skbio/stats/tests/test_composition.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T04:03:54,510 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests 2025-09-08T04:03:54,511 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T04:03:54,511 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T04:03:54,512 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T04:03:54,512 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T04:03:54,513 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T04:03:54,513 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T04:03:54,514 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination 2025-09-08T04:03:54,514 creating build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T04:03:54,515 copying skbio/stats/evolve/_hommola.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T04:03:54,515 copying skbio/stats/evolve/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve 2025-09-08T04:03:54,516 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T04:03:54,516 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T04:03:54,517 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T04:03:54,517 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T04:03:54,518 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T04:03:54,519 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T04:03:54,519 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance 2025-09-08T04:03:54,520 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T04:03:54,520 copying skbio/stats/ordination/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T04:03:54,521 copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T04:03:54,521 copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T04:03:54,522 copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T04:03:54,522 copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T04:03:54,523 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests 2025-09-08T04:03:54,523 creating build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T04:03:54,524 copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T04:03:54,524 copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/evolve/tests 2025-09-08T04:03:54,525 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T04:03:54,525 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T04:03:54,526 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T04:03:54,527 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T04:03:54,527 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T04:03:54,528 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T04:03:54,528 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests 2025-09-08T04:03:54,529 creating build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,529 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,530 copying skbio/sequence/tests/test_rna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,531 copying skbio/sequence/tests/test_protein.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,531 copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,532 copying skbio/sequence/tests/test_grammared_sequence.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,532 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,533 copying skbio/sequence/tests/test_dna.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,534 copying skbio/sequence/tests/test_distance.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,534 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/sequence/tests 2025-09-08T04:03:54,535 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T04:03:54,535 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T04:03:54,536 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T04:03:54,536 copying skbio/io/tests/test_iosources.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T04:03:54,537 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/tests 2025-09-08T04:03:54,538 creating build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,538 copying skbio/io/format/stockholm.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,539 copying skbio/io/format/qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,539 copying skbio/io/format/phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,540 copying skbio/io/format/ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,540 copying skbio/io/format/newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,541 copying skbio/io/format/lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,542 copying skbio/io/format/genbank.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,542 copying skbio/io/format/fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,543 copying skbio/io/format/fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,543 copying skbio/io/format/emptyfile.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,544 copying skbio/io/format/clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,545 copying skbio/io/format/blast7.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,545 copying skbio/io/format/blast6.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,546 copying skbio/io/format/_blast.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,546 copying skbio/io/format/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,547 copying skbio/io/format/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format 2025-09-08T04:03:54,548 creating build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,548 copying skbio/io/format/tests/test_stockholm.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,549 copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,549 copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,550 copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,551 copying skbio/io/format/tests/test_newick.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,551 copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,552 copying skbio/io/format/tests/test_genbank.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,552 copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,553 copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,553 copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,554 copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,555 copying skbio/io/format/tests/test_blast7.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,555 copying skbio/io/format/tests/test_blast6.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,556 copying skbio/io/format/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,556 copying skbio/io/format/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests 2025-09-08T04:03:54,557 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T04:03:54,557 copying skbio/diversity/tests/test_util.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T04:03:54,558 copying skbio/diversity/tests/test_driver.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T04:03:54,558 copying skbio/diversity/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/tests 2025-09-08T04:03:54,559 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T04:03:54,559 copying skbio/diversity/beta/_unifrac.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T04:03:54,560 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta 2025-09-08T04:03:54,561 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T04:03:54,561 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T04:03:54,561 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T04:03:54,562 copying skbio/diversity/alpha/_faith_pd.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T04:03:54,562 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T04:03:54,563 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T04:03:54,564 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T04:03:54,564 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha 2025-09-08T04:03:54,565 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T04:03:54,565 copying skbio/diversity/beta/tests/test_unifrac.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T04:03:54,566 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests 2025-09-08T04:03:54,567 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T04:03:54,567 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T04:03:54,567 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T04:03:54,568 copying skbio/diversity/alpha/tests/test_faith_pd.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T04:03:54,568 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T04:03:54,569 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T04:03:54,570 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T04:03:54,570 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests 2025-09-08T04:03:54,571 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T04:03:54,571 copying skbio/alignment/tests/test_tabular_msa.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T04:03:54,572 copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T04:03:54,573 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T04:03:54,573 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/tests 2025-09-08T04:03:54,574 creating build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T04:03:54,574 copying skbio/alignment/_lib/__init__.py -> build/lib.linux-armv7l-cpython-313/skbio/alignment/_lib 2025-09-08T04:03:54,602 creating build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,603 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,603 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,604 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,605 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,605 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,606 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,606 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,607 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,607 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,608 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,608 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,609 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-313/skbio/stats/tests/data 2025-09-08T04:03:54,609 creating build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,609 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,610 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,610 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,611 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,611 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,612 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,612 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,613 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,613 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,614 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,615 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,615 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,616 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,616 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,617 copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,617 copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,618 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,618 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,619 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,619 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,620 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,620 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,621 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,621 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,622 copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,622 copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/lib.linux-armv7l-cpython-313/skbio/stats/ordination/tests/data 2025-09-08T04:03:54,623 creating build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,623 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,624 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,624 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,625 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,625 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,626 copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,626 copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,627 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,627 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,628 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,628 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,629 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,630 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,630 copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,631 copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,631 copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,631 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,632 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,632 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,633 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,633 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,634 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-313/skbio/stats/distance/tests/data 2025-09-08T04:03:54,635 creating build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T04:03:54,635 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T04:03:54,635 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T04:03:54,636 copying skbio/io/tests/data/example_file.gz -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T04:03:54,636 copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T04:03:54,637 copying skbio/io/tests/data/example_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T04:03:54,637 copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T04:03:54,638 copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T04:03:54,638 copying skbio/io/tests/data/big5_file -> build/lib.linux-armv7l-cpython-313/skbio/io/tests/data 2025-09-08T04:03:54,639 creating build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,639 copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,639 copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,640 copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,640 copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,641 copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,641 copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,642 copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,642 copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,643 copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,644 copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,644 copying skbio/io/format/tests/data/stockholm_runon_gs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,645 copying skbio/io/format/tests/data/stockholm_runon_gf -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,645 copying skbio/io/format/tests/data/stockholm_rna -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,646 copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,646 copying skbio/io/format/tests/data/stockholm_no_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,647 copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,647 copying skbio/io/format/tests/data/stockholm_multiple_msa -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,648 copying skbio/io/format/tests/data/stockholm_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,648 copying skbio/io/format/tests/data/stockholm_missing_footer -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,649 copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,649 copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,650 copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,650 copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,651 copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,651 copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,652 copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,652 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,653 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,653 copying skbio/io/format/tests/data/stockholm_invalid_data_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,654 copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,654 copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,655 copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,655 copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,656 copying skbio/io/format/tests/data/stockholm_duplicate_gr -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,656 copying skbio/io/format/tests/data/stockholm_duplicate_gc -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,657 copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,657 copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,658 copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,658 copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,659 copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,659 copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,660 copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,660 copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,661 copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,661 copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,662 copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,662 copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,663 copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,663 copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,664 copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,664 copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,665 copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,665 copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,666 copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,666 copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,667 copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,667 copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,668 copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,668 copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,669 copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,670 copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,670 copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,671 copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,671 copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,672 copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,672 copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,673 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,673 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,674 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,674 copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,675 copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,675 copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,676 copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,676 copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,677 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,677 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,678 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,678 copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,679 copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,679 copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,680 copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,680 copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,681 copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,681 copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,682 copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,682 copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,683 copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,683 copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,684 copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,684 copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,685 copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,685 copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,686 copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,686 copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,687 copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,687 copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,688 copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,688 copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,689 copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,689 copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,690 copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,690 copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,691 copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,691 copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,692 copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,692 copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,693 copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,693 copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,694 copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,695 copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,695 copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,696 copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,696 copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,697 copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,697 copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,698 copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,698 copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,698 copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,699 copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,700 copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,700 copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,701 copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,701 copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,702 copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,702 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,703 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,703 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,704 copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,704 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,705 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,705 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,706 copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,706 copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,707 copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,707 copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,708 copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,708 copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,709 copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,709 copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,710 copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,710 copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,711 copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,711 copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,712 copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,712 copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,713 copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,713 copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,714 copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,714 copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,715 copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,715 copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,716 copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,716 copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,717 copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,717 copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,718 copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,718 copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,719 copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,719 copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,720 copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,720 copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,721 copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,721 copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,722 copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,722 copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,723 copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,724 copying skbio/io/format/tests/data/legacy9_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,724 copying skbio/io/format/tests/data/legacy9_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,725 copying skbio/io/format/tests/data/legacy9_mixed_nans -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,725 copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,726 copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,726 copying skbio/io/format/tests/data/legacy9_and_blast7_default -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,727 copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,727 copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,728 copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,728 copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,729 copying skbio/io/format/tests/data/genbank_single_record_upper -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,729 copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,730 copying skbio/io/format/tests/data/genbank_single_record -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,730 copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,731 copying skbio/io/format/tests/data/genbank_missing_locus_name -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,731 copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,732 copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,732 copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,733 copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,733 copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,734 copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,734 copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,735 copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,735 copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,736 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,736 copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,737 copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,737 copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,738 copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,738 copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,739 copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,739 copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,740 copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,740 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,741 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,741 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,742 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,742 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,743 copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,743 copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,744 copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,745 copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,745 copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,746 copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,746 copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,747 copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,747 copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,748 copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,748 copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,749 copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,749 copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,750 copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,750 copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,751 copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,751 copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,752 copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,752 copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,753 copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,753 copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,753 copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,754 copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,755 copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,755 copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,756 copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,756 copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,757 copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,757 copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,758 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,758 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,759 copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,759 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,760 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,760 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,760 copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,761 copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,761 copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,762 copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,762 copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,763 copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,763 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,764 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,765 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,765 copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,766 copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,766 copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,767 copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,767 copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,768 copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,768 copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,769 copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,769 copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,769 copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,770 copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,770 copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,771 copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,771 copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,772 copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,772 copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,773 copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,773 copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,774 copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,775 copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,775 copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,776 copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,776 copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,777 copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,777 copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,777 copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,778 copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,778 copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,779 copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,779 copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,780 copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,780 copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,781 copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,781 copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,782 copying skbio/io/format/tests/data/empty -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,782 copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,783 copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,783 copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,784 copying skbio/io/format/tests/data/blast7_invalid_gibberish -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,784 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,785 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,785 copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,786 copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,786 copying skbio/io/format/tests/data/blast7_default_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,787 copying skbio/io/format/tests/data/blast7_custom_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,787 copying skbio/io/format/tests/data/blast7_custom_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,788 copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,788 copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,789 copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,789 copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,790 copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,790 copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,791 copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,791 copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,792 copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,792 copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,793 copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.linux-armv7l-cpython-313/skbio/io/format/tests/data 2025-09-08T04:03:54,793 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T04:03:54,794 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T04:03:54,794 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T04:03:54,795 copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T04:03:54,796 copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T04:03:54,796 copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T04:03:54,797 copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-313/skbio/diversity/beta/tests/data/qiime-191-tt 2025-09-08T04:03:54,797 creating build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T04:03:54,797 copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T04:03:54,798 copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T04:03:54,798 copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T04:03:54,799 copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/lib.linux-armv7l-cpython-313/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-09-08T04:03:54,807 running build_ext 2025-09-08T04:03:55,333 building 'skbio.stats.__subsample' extension 2025-09-08T04:03:55,334 creating build/temp.linux-armv7l-cpython-313/skbio/stats 2025-09-08T04:03:55,334 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include/python3.13 -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -c skbio/stats/__subsample.c -o build/temp.linux-armv7l-cpython-313/skbio/stats/__subsample.o 2025-09-08T04:03:55,784 skbio/stats/__subsample.c: In function ‘__pyx_pf_5numpy_7ndarray___getbuffer__’: 2025-09-08T04:03:55,785 skbio/stats/__subsample.c:1866:50: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_C_CONTIGUOUS’? 2025-09-08T04:03:55,786 1866 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); 2025-09-08T04:03:55,786 | ^~~~~~~~~~~~~~~~ 2025-09-08T04:03:55,786 | PyBUF_C_CONTIGUOUS 2025-09-08T04:03:55,786 skbio/stats/__subsample.c:1866:50: note: each undeclared identifier is reported only once for each function it appears in 2025-09-08T04:03:55,809 skbio/stats/__subsample.c:1922:50: error: ‘NPY_F_CONTIGUOUS’ undeclared (first use in this function); did you mean ‘PyBUF_F_CONTIGUOUS’? 2025-09-08T04:03:55,809 1922 | __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); 2025-09-08T04:03:55,809 | ^~~~~~~~~~~~~~~~ 2025-09-08T04:03:55,809 | PyBUF_F_CONTIGUOUS 2025-09-08T04:03:55,816 skbio/stats/__subsample.c: In function ‘__pyx_f_5numpy__util_dtypestring’: 2025-09-08T04:03:55,819 skbio/stats/__subsample.c:2988:29: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T04:03:55,819 2988 | if (unlikely(__pyx_v_descr->names == Py_None)) { 2025-09-08T04:03:55,819 | ^~ 2025-09-08T04:03:55,819 skbio/stats/__subsample.c:442:43: note: in definition of macro ‘unlikely’ 2025-09-08T04:03:55,819 442 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T04:03:55,819 | ^ 2025-09-08T04:03:55,822 skbio/stats/__subsample.c:2992:28: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘names’ 2025-09-08T04:03:55,822 2992 | __pyx_t_1 = __pyx_v_descr->names; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0; 2025-09-08T04:03:55,822 | ^~ 2025-09-08T04:03:55,825 skbio/stats/__subsample.c:3011:31: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T04:03:55,825 3011 | if (unlikely(__pyx_v_descr->fields == Py_None)) { 2025-09-08T04:03:55,825 | ^~ 2025-09-08T04:03:55,825 skbio/stats/__subsample.c:442:43: note: in definition of macro ‘unlikely’ 2025-09-08T04:03:55,826 442 | #define unlikely(x) __builtin_expect(!!(x), 0) 2025-09-08T04:03:55,826 | ^ 2025-09-08T04:03:55,828 skbio/stats/__subsample.c:3015:51: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘fields’ 2025-09-08T04:03:55,828 3015 | __pyx_t_3 = __Pyx_PyDict_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 795; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; 2025-09-08T04:03:55,828 | ^~ 2025-09-08T04:03:55,836 skbio/stats/__subsample.c:3220:79: error: ‘PyArray_Descr’ {aka ‘struct _PyArray_Descr’} has no member named ‘elsize’ 2025-09-08T04:03:55,836 3220 | (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize); 2025-09-08T04:03:55,836 | ^~ 2025-09-08T04:03:55,849 skbio/stats/__subsample.c: In function ‘__Pyx_InitCachedConstants’: 2025-09-08T04:03:55,852 skbio/stats/__subsample.c:4004:3: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T04:03:55,853 4004 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T04:03:55,853 | ^~~~~~~~~~~~~~~~ 2025-09-08T04:03:55,853 In file included from /usr/include/python3.13/Python.h:101, 2025-09-08T04:03:55,853 from skbio/stats/__subsample.c:12: 2025-09-08T04:03:55,853 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T04:03:55,853 213 | PyCode_New( 2025-09-08T04:03:55,853 | ^~~~~~~~~~ 2025-09-08T04:03:55,857 skbio/stats/__subsample.c:4004:264: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T04:03:55,857 4004 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T04:03:55,857 | ^~ 2025-09-08T04:03:55,857 | | 2025-09-08T04:03:55,857 | int 2025-09-08T04:03:55,858 skbio/stats/__subsample.c:69:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T04:03:55,858 69 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T04:03:55,858 | ^~~~~ 2025-09-08T04:03:55,858 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T04:03:55,858 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T04:03:55,858 | ~~~~~~~~~~^ 2025-09-08T04:03:55,861 skbio/stats/__subsample.c:4004:268: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T04:03:55,861 4004 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T04:03:55,862 | ^~~~~~~~~~~~~~~~~ 2025-09-08T04:03:55,862 | | 2025-09-08T04:03:55,862 | PyObject * {aka struct _object *} 2025-09-08T04:03:55,862 skbio/stats/__subsample.c:69:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T04:03:55,862 69 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T04:03:55,862 | ^~~~ 2025-09-08T04:03:55,862 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T04:03:55,862 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T04:03:55,862 | ~~~~^ 2025-09-08T04:03:55,866 skbio/stats/__subsample.c:69:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T04:03:55,866 69 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T04:03:55,866 | ^~~~~~~~~~ 2025-09-08T04:03:55,866 skbio/stats/__subsample.c:4004:33: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T04:03:55,866 4004 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2025-09-08T04:03:55,866 | ^~~~~~~~~~~~~~~~ 2025-09-08T04:03:55,866 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T04:03:55,866 213 | PyCode_New( 2025-09-08T04:03:55,866 | ^~~~~~~~~~ 2025-09-08T04:03:55,890 skbio/stats/__subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2025-09-08T04:03:55,896 skbio/stats/__subsample.c:4305:22: error: implicit declaration of function ‘PyUnicode_GET_SIZE’; did you mean ‘PyDict_GET_SIZE’? [-Wimplicit-function-declaration] 2025-09-08T04:03:55,896 4305 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2025-09-08T04:03:55,896 | ^~~~~~~~~~~~~~~~~~ 2025-09-08T04:03:55,897 | PyDict_GET_SIZE 2025-09-08T04:03:55,945 skbio/stats/__subsample.c: In function ‘__Pyx_ErrRestore’: 2025-09-08T04:03:55,950 skbio/stats/__subsample.c:5145:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T04:03:55,950 5145 | tmp_type = tstate->curexc_type; 2025-09-08T04:03:55,950 | ^~ 2025-09-08T04:03:55,955 skbio/stats/__subsample.c:5146:23: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T04:03:55,955 5146 | tmp_value = tstate->curexc_value; 2025-09-08T04:03:55,955 | ^~ 2025-09-08T04:03:55,960 skbio/stats/__subsample.c:5147:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T04:03:55,960 5147 | tmp_tb = tstate->curexc_traceback; 2025-09-08T04:03:55,960 | ^~ 2025-09-08T04:03:55,965 skbio/stats/__subsample.c:5148:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T04:03:55,965 5148 | tstate->curexc_type = type; 2025-09-08T04:03:55,965 | ^~ 2025-09-08T04:03:55,970 skbio/stats/__subsample.c:5149:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T04:03:55,970 5149 | tstate->curexc_value = value; 2025-09-08T04:03:55,970 | ^~ 2025-09-08T04:03:55,974 skbio/stats/__subsample.c:5150:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T04:03:55,975 5150 | tstate->curexc_traceback = tb; 2025-09-08T04:03:55,975 | ^~ 2025-09-08T04:03:55,975 skbio/stats/__subsample.c: In function ‘__Pyx_ErrFetch’: 2025-09-08T04:03:55,980 skbio/stats/__subsample.c:5161:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T04:03:55,980 5161 | *type = tstate->curexc_type; 2025-09-08T04:03:55,980 | ^~ 2025-09-08T04:03:55,985 skbio/stats/__subsample.c:5162:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T04:03:55,985 5162 | *value = tstate->curexc_value; 2025-09-08T04:03:55,985 | ^~ 2025-09-08T04:03:55,990 skbio/stats/__subsample.c:5163:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T04:03:55,990 5163 | *tb = tstate->curexc_traceback; 2025-09-08T04:03:55,990 | ^~ 2025-09-08T04:03:55,994 skbio/stats/__subsample.c:5164:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_type’ 2025-09-08T04:03:55,995 5164 | tstate->curexc_type = 0; 2025-09-08T04:03:55,995 | ^~ 2025-09-08T04:03:55,999 skbio/stats/__subsample.c:5165:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_value’ 2025-09-08T04:03:55,999 5165 | tstate->curexc_value = 0; 2025-09-08T04:03:56,000 | ^~ 2025-09-08T04:03:56,004 skbio/stats/__subsample.c:5166:11: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T04:03:56,004 5166 | tstate->curexc_traceback = 0; 2025-09-08T04:03:56,005 | ^~ 2025-09-08T04:03:56,016 skbio/stats/__subsample.c: In function ‘__Pyx_Raise’: 2025-09-08T04:03:56,021 skbio/stats/__subsample.c:5318:34: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T04:03:56,021 5318 | PyObject* tmp_tb = tstate->curexc_traceback; 2025-09-08T04:03:56,021 | ^~ 2025-09-08T04:03:56,026 skbio/stats/__subsample.c:5321:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’ 2025-09-08T04:03:56,027 5321 | tstate->curexc_traceback = tb; 2025-09-08T04:03:56,027 | ^~ 2025-09-08T04:03:56,038 skbio/stats/__subsample.c: In function ‘__Pyx_CreateCodeObjectForTraceback’: 2025-09-08T04:03:56,043 skbio/stats/__subsample.c:5529:5: warning: ‘PyCode_New’ is deprecated [-Wdeprecated-declarations] 2025-09-08T04:03:56,043 5529 | py_code = __Pyx_PyCode_New( 2025-09-08T04:03:56,043 | ^~~~~~~ 2025-09-08T04:03:56,043 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T04:03:56,043 213 | PyCode_New( 2025-09-08T04:03:56,043 | ^~~~~~~~~~ 2025-09-08T04:03:56,048 skbio/stats/__subsample.c:5543:9: error: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2025-09-08T04:03:56,048 5543 | py_line, 2025-09-08T04:03:56,048 | ^~~~~~~ 2025-09-08T04:03:56,049 | | 2025-09-08T04:03:56,049 | int 2025-09-08T04:03:56,049 skbio/stats/__subsample.c:69:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T04:03:56,049 69 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T04:03:56,049 | ^~~~~ 2025-09-08T04:03:56,049 /usr/include/python3.13/cpython/code.h:216:45: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2025-09-08T04:03:56,049 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T04:03:56,049 | ~~~~~~~~~~^ 2025-09-08T04:03:56,054 skbio/stats/__subsample.c:5544:9: error: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2025-09-08T04:03:56,054 5544 | __pyx_empty_bytes /*PyObject *lnotab*/ 2025-09-08T04:03:56,054 | ^~~~~~~~~~~~~~~~~ 2025-09-08T04:03:56,054 | | 2025-09-08T04:03:56,055 | PyObject * {aka struct _object *} 2025-09-08T04:03:56,055 skbio/stats/__subsample.c:69:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2025-09-08T04:03:56,055 69 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T04:03:56,055 | ^~~~ 2025-09-08T04:03:56,055 /usr/include/python3.13/cpython/code.h:216:52: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2025-09-08T04:03:56,055 216 | PyObject *l, PyObject *m, PyObject *n, int o, PyObject *p, 2025-09-08T04:03:56,055 | ~~~~^ 2025-09-08T04:03:56,060 skbio/stats/__subsample.c:69:11: error: too few arguments to function ‘PyCode_New’ 2025-09-08T04:03:56,060 69 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2025-09-08T04:03:56,060 | ^~~~~~~~~~ 2025-09-08T04:03:56,060 skbio/stats/__subsample.c:5529:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2025-09-08T04:03:56,060 5529 | py_code = __Pyx_PyCode_New( 2025-09-08T04:03:56,061 | ^~~~~~~~~~~~~~~~ 2025-09-08T04:03:56,061 /usr/include/python3.13/cpython/code.h:213:1: note: declared here 2025-09-08T04:03:56,061 213 | PyCode_New( 2025-09-08T04:03:56,061 | ^~~~~~~~~~ 2025-09-08T04:03:56,063 skbio/stats/__subsample.c: In function ‘__Pyx_AddTraceback’: 2025-09-08T04:03:56,068 skbio/stats/__subsample.c:5572:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2025-09-08T04:03:56,068 5572 | py_frame->f_lineno = py_line; 2025-09-08T04:03:56,069 | ^~ 2025-09-08T04:03:56,070 skbio/stats/__subsample.c: At top level: 2025-09-08T04:03:56,075 skbio/stats/__subsample.c:5674:12: fatal error: longintrepr.h: No such file or directory 2025-09-08T04:03:56,075 5674 | #include "longintrepr.h" 2025-09-08T04:03:56,075 | ^~~~~~~~~~~~~~~ 2025-09-08T04:03:56,075 compilation terminated. 2025-09-08T04:03:56,079 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T04:03:56,255 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T04:03:56,267 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T04:03:56,267 exec(compile('"'"''"'"''"'"' 2025-09-08T04:03:56,267 # This is -- a caller that pip uses to run setup.py 2025-09-08T04:03:56,267 # 2025-09-08T04:03:56,267 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T04:03:56,267 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T04:03:56,267 # - It provides a clear error message when setuptools is not installed. 2025-09-08T04:03:56,267 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T04:03:56,267 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T04:03:56,267 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T04:03:56,267 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T04:03:56,267 import os, sys, tokenize, traceback 2025-09-08T04:03:56,267 2025-09-08T04:03:56,267 try: 2025-09-08T04:03:56,267 import setuptools 2025-09-08T04:03:56,267 except ImportError: 2025-09-08T04:03:56,267 print( 2025-09-08T04:03:56,267 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T04:03:56,267 "the build environment with exception:", 2025-09-08T04:03:56,267 file=sys.stderr, 2025-09-08T04:03:56,267 ) 2025-09-08T04:03:56,267 traceback.print_exc() 2025-09-08T04:03:56,267 sys.exit(1) 2025-09-08T04:03:56,267 2025-09-08T04:03:56,267 __file__ = %r 2025-09-08T04:03:56,267 sys.argv[0] = __file__ 2025-09-08T04:03:56,267 2025-09-08T04:03:56,267 if os.path.exists(__file__): 2025-09-08T04:03:56,267 filename = __file__ 2025-09-08T04:03:56,267 with tokenize.open(__file__) as f: 2025-09-08T04:03:56,267 setup_py_code = f.read() 2025-09-08T04:03:56,267 else: 2025-09-08T04:03:56,267 filename = "" 2025-09-08T04:03:56,267 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T04:03:56,267 2025-09-08T04:03:56,267 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T04:03:56,267 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-vzljjq19/scikit-bio_36291d2c073242e4a11b4be00b3290e2/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-azw6vdap[/] 2025-09-08T04:03:56,267 [bold magenta]cwd[/]: /tmp/pip-wheel-vzljjq19/scikit-bio_36291d2c073242e4a11b4be00b3290e2/ 2025-09-08T04:03:56,267 Building wheel for scikit-bio (setup.py): finished with status 'error' 2025-09-08T04:03:56,268 ERROR: Failed building wheel for scikit-bio 2025-09-08T04:03:56,268 Running setup.py clean for scikit-bio 2025-09-08T04:03:56,269 Running command python setup.py clean 2025-09-08T04:03:57,101 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T04:03:57,101 !! 2025-09-08T04:03:57,101 ******************************************************************************** 2025-09-08T04:03:57,102 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T04:03:57,102 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T04:03:57,102 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T04:03:57,102 or your builds will no longer be supported. 2025-09-08T04:03:57,102 ******************************************************************************** 2025-09-08T04:03:57,102 !! 2025-09-08T04:03:57,102 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T04:03:57,423 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T04:03:57,423 !! 2025-09-08T04:03:57,423 ******************************************************************************** 2025-09-08T04:03:57,423 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T04:03:57,424 License :: OSI Approved :: BSD License 2025-09-08T04:03:57,424 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T04:03:57,424 ******************************************************************************** 2025-09-08T04:03:57,424 !! 2025-09-08T04:03:57,424 self._finalize_license_expression() 2025-09-08T04:03:57,498 running clean 2025-09-08T04:03:57,643 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T04:03:57,643 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T04:03:57,662 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T04:03:57,662 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T04:03:57,662 removing 'build' 2025-09-08T04:03:57,777 Failed to build scikit-bio 2025-09-08T04:03:57,778 ERROR: Failed to build one or more wheels 2025-09-08T04:03:57,779 Exception information: 2025-09-08T04:03:57,779 Traceback (most recent call last): 2025-09-08T04:03:57,779 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T04:03:57,779 status = _inner_run() 2025-09-08T04:03:57,779 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T04:03:57,779 return self.run(options, args) 2025-09-08T04:03:57,779 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T04:03:57,779 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T04:03:57,779 return func(self, options, args) 2025-09-08T04:03:57,779 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T04:03:57,779 raise CommandError("Failed to build one or more wheels") 2025-09-08T04:03:57,779 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T04:03:57,783 Removed build tracker: '/tmp/pip-build-tracker-gc71atsy'