2025-09-08T04:04:42,687 Created temporary directory: /tmp/pip-build-tracker-yqj0dccd 2025-09-08T04:04:42,687 Initialized build tracking at /tmp/pip-build-tracker-yqj0dccd 2025-09-08T04:04:42,687 Created build tracker: /tmp/pip-build-tracker-yqj0dccd 2025-09-08T04:04:42,688 Entered build tracker: /tmp/pip-build-tracker-yqj0dccd 2025-09-08T04:04:42,688 Created temporary directory: /tmp/pip-wheel-az06znqw 2025-09-08T04:04:42,691 Created temporary directory: /tmp/pip-ephem-wheel-cache-fc8uvryu 2025-09-08T04:04:42,749 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T04:04:42,751 2 location(s) to search for versions of chemlab: 2025-09-08T04:04:42,751 * https://pypi.org/simple/chemlab/ 2025-09-08T04:04:42,751 * https://www.piwheels.org/simple/chemlab/ 2025-09-08T04:04:42,751 Fetching project page and analyzing links: https://pypi.org/simple/chemlab/ 2025-09-08T04:04:42,752 Getting page https://pypi.org/simple/chemlab/ 2025-09-08T04:04:42,753 Found index url https://pypi.org/simple/ 2025-09-08T04:04:42,822 Fetched page https://pypi.org/simple/chemlab/ as application/vnd.pypi.simple.v1+json 2025-09-08T04:04:42,824 Found link https://files.pythonhosted.org/packages/fe/92/0485eac4092638f1369c0b69db145fc1ac1552a3d98597b49f5790505078/chemlab-0.1.tar.gz (from https://pypi.org/simple/chemlab/), version: 0.1 2025-09-08T04:04:42,824 Found link https://files.pythonhosted.org/packages/fc/bb/c3809f22dc4bb43786328f757ccd9f0aba85a3e3a31799b8f72dcec278c6/chemlab-0.2.tar.gz (from https://pypi.org/simple/chemlab/), version: 0.2 2025-09-08T04:04:42,824 Found link https://files.pythonhosted.org/packages/32/fc/ef64d2415ad8d45fd5c7c2fa1a1ea707d8c27709cb75e37c7f2a70e8a752/chemlab-0.3.tar.gz (from https://pypi.org/simple/chemlab/), version: 0.3 2025-09-08T04:04:42,825 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d0/3f/5822787996d3371adeec9fda448708cddeff6d0043ce9f09210bae17d8c7/chemlab-1.0b1-py2.7-linux-x86_64.egg (from https://pypi.org/simple/chemlab/) 2025-09-08T04:04:42,825 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8b/91/0080f381cb320dda5541de750726c1ec75995da7387e757dcb62fc2e03d2/chemlab-1.0b1-py3.5-linux-x86_64.egg (from https://pypi.org/simple/chemlab/) 2025-09-08T04:04:42,825 Found link https://files.pythonhosted.org/packages/54/78/33ac14d7ceb7068a34e6e1bb3474c18e79991faba2d9cda35ceb20d7d54e/chemlab-1.0b1.tar.gz (from https://pypi.org/simple/chemlab/), version: 1.0b1 2025-09-08T04:04:42,825 Found link https://files.pythonhosted.org/packages/66/ce/d4f243223b4bbc13839d5977056cc86424c66bede936ebc463c9ce40ce97/chemlab-1.1.tar.gz (from https://pypi.org/simple/chemlab/), version: 1.1 2025-09-08T04:04:42,826 Fetching project page and analyzing links: https://www.piwheels.org/simple/chemlab/ 2025-09-08T04:04:42,826 Getting page https://www.piwheels.org/simple/chemlab/ 2025-09-08T04:04:42,827 Found index url https://www.piwheels.org/simple/ 2025-09-08T04:04:42,920 Fetched page https://www.piwheels.org/simple/chemlab/ as text/html 2025-09-08T04:04:42,923 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.1-cp35-cp35m-linux_armv7l.whl#sha256=6143ed551835453f9a1e6f17729f85725670f37ae46e74d010fedb0d35f9a7c0 (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,923 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.1-cp35-cp35m-linux_armv6l.whl#sha256=6143ed551835453f9a1e6f17729f85725670f37ae46e74d010fedb0d35f9a7c0 (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,923 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.1-cp34-cp34m-linux_armv6l.whl#sha256=b856c0503c36b63d8a6e83d3a11e363f1124a0b7f3262716accf2121ed82afb7 (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,924 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.1-cp34-cp34m-linux_armv7l.whl#sha256=b856c0503c36b63d8a6e83d3a11e363f1124a0b7f3262716accf2121ed82afb7 (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,924 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.0b1-cp37-cp37m-linux_armv7l.whl#sha256=4c29fac657765a9984487834c5e8df2ab870e43f0ca053fe5b5805f37b3256dd (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,924 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.0b1-cp37-cp37m-linux_armv6l.whl#sha256=4c29fac657765a9984487834c5e8df2ab870e43f0ca053fe5b5805f37b3256dd (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,924 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.0b1-cp34-cp34m-linux_armv6l.whl#sha256=15812879f6421a4184032d2ff4b2541291e403a240e05ba18e054ccbc008272a (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,924 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.0b1-cp34-cp34m-linux_armv7l.whl#sha256=15812879f6421a4184032d2ff4b2541291e403a240e05ba18e054ccbc008272a (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,924 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.0b1-cp35-cp35m-linux_armv7l.whl#sha256=6330ed1a2efbbfaa58adb4beb0dfebf92c83d6dc2940bca8afc250fee7d3e2e0 (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,924 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.0b1-cp35-cp35m-linux_armv6l.whl#sha256=6330ed1a2efbbfaa58adb4beb0dfebf92c83d6dc2940bca8afc250fee7d3e2e0 (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,925 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.0b1-cp39-cp39-linux_armv6l.whl#sha256=01759ff6bcf247337fc81e17bade582f937b96dd51011fd0834f548faeea4df3 (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,925 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-1.0b1-cp39-cp39-linux_armv7l.whl#sha256=01759ff6bcf247337fc81e17bade582f937b96dd51011fd0834f548faeea4df3 (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,925 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-0.3-cp34-cp34m-linux_armv6l.whl#sha256=b3d51ae34dbdc8851ecf8580b17b8e520650a1472f2305727016f30e57fde44e (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,925 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-0.3-cp34-cp34m-linux_armv7l.whl#sha256=b3d51ae34dbdc8851ecf8580b17b8e520650a1472f2305727016f30e57fde44e (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,925 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-0.1-cp34-cp34m-linux_armv6l.whl#sha256=5b32aa8cadf361c90abc48afc2f30c74789ce765d17ca4a74105d575b863551f (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,925 Skipping link: No binaries permitted for chemlab: https://archive1.piwheels.org/simple/chemlab/chemlab-0.1-cp34-cp34m-linux_armv7l.whl#sha256=5b32aa8cadf361c90abc48afc2f30c74789ce765d17ca4a74105d575b863551f (from https://www.piwheels.org/simple/chemlab/) 2025-09-08T04:04:42,925 Skipping link: not a file: https://www.piwheels.org/simple/chemlab/ 2025-09-08T04:04:42,925 Skipping link: not a file: https://pypi.org/simple/chemlab/ 2025-09-08T04:04:42,948 Given no hashes to check 1 links for project 'chemlab': discarding no candidates 2025-09-08T04:04:42,950 Collecting chemlab==1.0b1 2025-09-08T04:04:42,952 Created temporary directory: /tmp/pip-unpack-9x_nirso 2025-09-08T04:04:43,111 Downloading chemlab-1.0b1.tar.gz (9.9 MB) 2025-09-08T04:04:44,964 Added chemlab==1.0b1 from https://files.pythonhosted.org/packages/54/78/33ac14d7ceb7068a34e6e1bb3474c18e79991faba2d9cda35ceb20d7d54e/chemlab-1.0b1.tar.gz to build tracker '/tmp/pip-build-tracker-yqj0dccd' 2025-09-08T04:04:44,965 Running setup.py (path:/tmp/pip-wheel-az06znqw/chemlab_712f84daa9a5499f9d6da2c4bb01b792/setup.py) egg_info for package chemlab 2025-09-08T04:04:44,966 Created temporary directory: /tmp/pip-pip-egg-info-tt6o8jpt 2025-09-08T04:04:44,966 Preparing metadata (setup.py): started 2025-09-08T04:04:44,967 Running command python setup.py egg_info 2025-09-08T04:04:46,089 running egg_info 2025-09-08T04:04:46,160 creating /tmp/pip-pip-egg-info-tt6o8jpt/chemlab.egg-info 2025-09-08T04:04:46,160 writing /tmp/pip-pip-egg-info-tt6o8jpt/chemlab.egg-info/PKG-INFO 2025-09-08T04:04:46,161 writing dependency_links to /tmp/pip-pip-egg-info-tt6o8jpt/chemlab.egg-info/dependency_links.txt 2025-09-08T04:04:46,162 writing requirements to /tmp/pip-pip-egg-info-tt6o8jpt/chemlab.egg-info/requires.txt 2025-09-08T04:04:46,162 writing top-level names to /tmp/pip-pip-egg-info-tt6o8jpt/chemlab.egg-info/top_level.txt 2025-09-08T04:04:46,162 writing manifest file '/tmp/pip-pip-egg-info-tt6o8jpt/chemlab.egg-info/SOURCES.txt' 2025-09-08T04:04:46,464 reading manifest file '/tmp/pip-pip-egg-info-tt6o8jpt/chemlab.egg-info/SOURCES.txt' 2025-09-08T04:04:46,465 reading manifest template 'MANIFEST.in' 2025-09-08T04:04:46,466 warning: no files found matching 'distribute_setup.py' 2025-09-08T04:04:46,523 warning: manifest_maker: MANIFEST.in, line 4: 'recursive-exclude' expects ... 2025-09-08T04:04:46,529 no previously-included directories found matching 'docs/_build' 2025-09-08T04:04:46,529 adding license file 'COPYING' 2025-09-08T04:04:46,540 writing manifest file '/tmp/pip-pip-egg-info-tt6o8jpt/chemlab.egg-info/SOURCES.txt' 2025-09-08T04:04:46,659 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T04:04:46,664 Source in /tmp/pip-wheel-az06znqw/chemlab_712f84daa9a5499f9d6da2c4bb01b792 has version 1.0b1, which satisfies requirement chemlab==1.0b1 from https://files.pythonhosted.org/packages/54/78/33ac14d7ceb7068a34e6e1bb3474c18e79991faba2d9cda35ceb20d7d54e/chemlab-1.0b1.tar.gz 2025-09-08T04:04:46,664 Removed chemlab==1.0b1 from https://files.pythonhosted.org/packages/54/78/33ac14d7ceb7068a34e6e1bb3474c18e79991faba2d9cda35ceb20d7d54e/chemlab-1.0b1.tar.gz from build tracker '/tmp/pip-build-tracker-yqj0dccd' 2025-09-08T04:04:46,668 Created temporary directory: /tmp/pip-unpack-1oem6_2q 2025-09-08T04:04:46,669 Created temporary directory: /tmp/pip-unpack-g1brrjcj 2025-09-08T04:04:46,669 Building wheels for collected packages: chemlab 2025-09-08T04:04:46,670 Created temporary directory: /tmp/pip-wheel-s9unjp0x 2025-09-08T04:04:46,670 DEPRECATION: Building 'chemlab' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'chemlab'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T04:04:46,671 Building wheel for chemlab (setup.py): started 2025-09-08T04:04:46,672 Destination directory: /tmp/pip-wheel-s9unjp0x 2025-09-08T04:04:46,672 Running command python setup.py bdist_wheel 2025-09-08T04:04:47,739 running bdist_wheel 2025-09-08T04:04:48,014 running build 2025-09-08T04:04:48,014 running build_py 2025-09-08T04:04:48,085 creating build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,086 copying tests/testtools.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,086 copying tests/test_utils.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,087 copying tests/test_trajectory.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,087 copying tests/test_table.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,088 copying tests/test_md.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,088 copying tests/test_io.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,089 copying tests/test_db.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,089 copying tests/test_covertree.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,090 copying tests/test_core.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,090 copying tests/test_base.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,091 copying tests/mock.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,092 copying tests/__init__.py -> build/lib.linux-armv7l-cpython-313/tests 2025-09-08T04:04:48,092 creating build/lib.linux-armv7l-cpython-313/examples 2025-09-08T04:04:48,093 copying examples/view_trajectory.py -> build/lib.linux-armv7l-cpython-313/examples 2025-09-08T04:04:48,093 copying examples/tetrahedra_tutorial.py -> build/lib.linux-armv7l-cpython-313/examples 2025-09-08T04:04:48,094 copying examples/offline_rendering.py -> build/lib.linux-armv7l-cpython-313/examples 2025-09-08T04:04:48,094 copying examples/nacl.py -> build/lib.linux-armv7l-cpython-313/examples 2025-09-08T04:04:48,095 copying examples/__init__.py -> build/lib.linux-armv7l-cpython-313/examples 2025-09-08T04:04:48,095 creating build/lib.linux-armv7l-cpython-313/chemlab 2025-09-08T04:04:48,096 copying chemlab/table.py -> build/lib.linux-armv7l-cpython-313/chemlab 2025-09-08T04:04:48,096 copying chemlab/ipython.py -> build/lib.linux-armv7l-cpython-313/chemlab 2025-09-08T04:04:48,097 copying chemlab/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab 2025-09-08T04:04:48,098 creating build/lib.linux-armv7l-cpython-313/chemlab/utils 2025-09-08T04:04:48,098 copying chemlab/utils/progressbar.py -> build/lib.linux-armv7l-cpython-313/chemlab/utils 2025-09-08T04:04:48,098 copying chemlab/utils/pbc.py -> build/lib.linux-armv7l-cpython-313/chemlab/utils 2025-09-08T04:04:48,099 copying chemlab/utils/neighbors.py -> build/lib.linux-armv7l-cpython-313/chemlab/utils 2025-09-08T04:04:48,099 copying chemlab/utils/geometry.py -> build/lib.linux-armv7l-cpython-313/chemlab/utils 2025-09-08T04:04:48,100 copying chemlab/utils/formula.py -> build/lib.linux-armv7l-cpython-313/chemlab/utils 2025-09-08T04:04:48,100 copying chemlab/utils/distances.py -> build/lib.linux-armv7l-cpython-313/chemlab/utils 2025-09-08T04:04:48,101 copying chemlab/utils/covertree.py -> build/lib.linux-armv7l-cpython-313/chemlab/utils 2025-09-08T04:04:48,101 copying chemlab/utils/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/utils 2025-09-08T04:04:48,102 creating build/lib.linux-armv7l-cpython-313/chemlab/resources 2025-09-08T04:04:48,102 copying chemlab/resources/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/resources 2025-09-08T04:04:48,103 creating build/lib.linux-armv7l-cpython-313/chemlab/qc 2025-09-08T04:04:48,103 copying chemlab/qc/wavefunction.py -> build/lib.linux-armv7l-cpython-313/chemlab/qc 2025-09-08T04:04:48,104 copying chemlab/qc/utils.py -> build/lib.linux-armv7l-cpython-313/chemlab/qc 2025-09-08T04:04:48,104 copying chemlab/qc/pgbf.py -> build/lib.linux-armv7l-cpython-313/chemlab/qc 2025-09-08T04:04:48,105 copying chemlab/qc/one.py -> build/lib.linux-armv7l-cpython-313/chemlab/qc 2025-09-08T04:04:48,105 copying chemlab/qc/cgbf.py -> build/lib.linux-armv7l-cpython-313/chemlab/qc 2025-09-08T04:04:48,106 copying chemlab/qc/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/qc 2025-09-08T04:04:48,107 creating build/lib.linux-armv7l-cpython-313/chemlab/notebook 2025-09-08T04:04:48,107 copying chemlab/notebook/display.py -> build/lib.linux-armv7l-cpython-313/chemlab/notebook 2025-09-08T04:04:48,107 copying chemlab/notebook/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/notebook 2025-09-08T04:04:48,108 creating build/lib.linux-armv7l-cpython-313/chemlab/mviewer 2025-09-08T04:04:48,108 copying chemlab/mviewer/qtmolecularviewer.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer 2025-09-08T04:04:48,109 copying chemlab/mviewer/events.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer 2025-09-08T04:04:48,109 copying chemlab/mviewer/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer 2025-09-08T04:04:48,110 copying chemlab/mviewer/QIPythonWidget.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer 2025-09-08T04:04:48,111 creating build/lib.linux-armv7l-cpython-313/chemlab/md 2025-09-08T04:04:48,111 copying chemlab/md/simulation.py -> build/lib.linux-armv7l-cpython-313/chemlab/md 2025-09-08T04:04:48,112 copying chemlab/md/potential.py -> build/lib.linux-armv7l-cpython-313/chemlab/md 2025-09-08T04:04:48,112 copying chemlab/md/energy.py -> build/lib.linux-armv7l-cpython-313/chemlab/md 2025-09-08T04:04:48,113 copying chemlab/md/analysis.py -> build/lib.linux-armv7l-cpython-313/chemlab/md 2025-09-08T04:04:48,113 copying chemlab/md/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/md 2025-09-08T04:04:48,114 creating build/lib.linux-armv7l-cpython-313/chemlab/libs 2025-09-08T04:04:48,114 copying chemlab/libs/termcolor.py -> build/lib.linux-armv7l-cpython-313/chemlab/libs 2025-09-08T04:04:48,115 copying chemlab/libs/periodic_kdtree.py -> build/lib.linux-armv7l-cpython-313/chemlab/libs 2025-09-08T04:04:48,115 copying chemlab/libs/cirpy.py -> build/lib.linux-armv7l-cpython-313/chemlab/libs 2025-09-08T04:04:48,116 copying chemlab/libs/chemspipy.py -> build/lib.linux-armv7l-cpython-313/chemlab/libs 2025-09-08T04:04:48,116 copying chemlab/libs/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/libs 2025-09-08T04:04:48,117 creating build/lib.linux-armv7l-cpython-313/chemlab/io 2025-09-08T04:04:48,117 copying chemlab/io/trajectory.py -> build/lib.linux-armv7l-cpython-313/chemlab/io 2025-09-08T04:04:48,118 copying chemlab/io/textutils.py -> build/lib.linux-armv7l-cpython-313/chemlab/io 2025-09-08T04:04:48,118 copying chemlab/io/datafile.py -> build/lib.linux-armv7l-cpython-313/chemlab/io 2025-09-08T04:04:48,119 copying chemlab/io/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/io 2025-09-08T04:04:48,120 creating build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,120 copying chemlab/graphics/uis.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,120 copying chemlab/graphics/transformations.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,121 copying chemlab/graphics/textures.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,122 copying chemlab/graphics/shapes.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,122 copying chemlab/graphics/shaders.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,123 copying chemlab/graphics/qtviewer.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,123 copying chemlab/graphics/qttrajectory.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,124 copying chemlab/graphics/qchemlabwidget.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,124 copying chemlab/graphics/processviewer.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,125 copying chemlab/graphics/pickers.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,125 copying chemlab/graphics/octree.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,126 copying chemlab/graphics/colors.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,126 copying chemlab/graphics/camera.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,127 copying chemlab/graphics/buffers.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,127 copying chemlab/graphics/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics 2025-09-08T04:04:48,128 creating build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,129 copying chemlab/db/utils.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,129 copying chemlab/db/units.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,130 copying chemlab/db/toxnetdb.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,130 copying chemlab/db/rcsbdb.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,131 copying chemlab/db/local.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,131 copying chemlab/db/lj.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,132 copying chemlab/db/cirdb.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,132 copying chemlab/db/chemspiderdb.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,133 copying chemlab/db/chemlabdb.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,133 copying chemlab/db/base.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,134 copying chemlab/db/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/db 2025-09-08T04:04:48,134 creating build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,135 copying chemlab/core/trajectory.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,135 copying chemlab/core/system.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,136 copying chemlab/core/serialization.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,136 copying chemlab/core/random.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,137 copying chemlab/core/molecule.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,137 copying chemlab/core/fields.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,138 copying chemlab/core/base.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,138 copying chemlab/core/attributes.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,139 copying chemlab/core/atom.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,139 copying chemlab/core/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/core 2025-09-08T04:04:48,140 creating build/lib.linux-armv7l-cpython-313/chemlab/contrib 2025-09-08T04:04:48,140 copying chemlab/contrib/gromacs.py -> build/lib.linux-armv7l-cpython-313/chemlab/contrib 2025-09-08T04:04:48,141 copying chemlab/contrib/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/contrib 2025-09-08T04:04:48,142 creating build/lib.linux-armv7l-cpython-313/chemlab/mviewer/representations 2025-09-08T04:04:48,142 copying chemlab/mviewer/representations/vdw.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/representations 2025-09-08T04:04:48,143 copying chemlab/mviewer/representations/state.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/representations 2025-09-08T04:04:48,143 copying chemlab/mviewer/representations/obsarray.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/representations 2025-09-08T04:04:48,144 copying chemlab/mviewer/representations/ballandstick.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/representations 2025-09-08T04:04:48,144 copying chemlab/mviewer/representations/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/representations 2025-09-08T04:04:48,145 creating build/lib.linux-armv7l-cpython-313/chemlab/mviewer/api 2025-09-08T04:04:48,145 copying chemlab/mviewer/api/ui.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/api 2025-09-08T04:04:48,146 copying chemlab/mviewer/api/selections.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/api 2025-09-08T04:04:48,146 copying chemlab/mviewer/api/init.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/api 2025-09-08T04:04:48,147 copying chemlab/mviewer/api/display.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/api 2025-09-08T04:04:48,147 copying chemlab/mviewer/api/core.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/api 2025-09-08T04:04:48,148 copying chemlab/mviewer/api/appeareance.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/api 2025-09-08T04:04:48,148 copying chemlab/mviewer/api/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/mviewer/api 2025-09-08T04:04:48,149 creating build/lib.linux-armv7l-cpython-313/chemlab/libs/pyxdr 2025-09-08T04:04:48,149 copying chemlab/libs/pyxdr/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/libs/pyxdr 2025-09-08T04:04:48,150 creating build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,151 copying chemlab/io/handlers/xyz.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,151 copying chemlab/io/handlers/xtctrr.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,152 copying chemlab/io/handlers/utils.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,152 copying chemlab/io/handlers/tinker.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,153 copying chemlab/io/handlers/pdb.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,153 copying chemlab/io/handlers/mol2.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,154 copying chemlab/io/handlers/mol.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,154 copying chemlab/io/handlers/hdf.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,155 copying chemlab/io/handlers/gro_map.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,155 copying chemlab/io/handlers/gro.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,156 copying chemlab/io/handlers/gamess.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,156 copying chemlab/io/handlers/edr.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,157 copying chemlab/io/handlers/cml.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,157 copying chemlab/io/handlers/cif.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,158 copying chemlab/io/handlers/base.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,158 copying chemlab/io/handlers/_cclib.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,159 copying chemlab/io/handlers/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/io/handlers 2025-09-08T04:04:48,160 creating build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,160 copying chemlab/graphics/renderers/wireframe.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,161 copying chemlab/graphics/renderers/triangles.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,161 copying chemlab/graphics/renderers/sphere_imp.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,162 copying chemlab/graphics/renderers/sphere.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,162 copying chemlab/graphics/renderers/point.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,163 copying chemlab/graphics/renderers/line.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,163 copying chemlab/graphics/renderers/cylinder_imp.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,164 copying chemlab/graphics/renderers/cylinder.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,164 copying chemlab/graphics/renderers/box.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,165 copying chemlab/graphics/renderers/bond.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,165 copying chemlab/graphics/renderers/base.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,166 copying chemlab/graphics/renderers/ballandstick.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,166 copying chemlab/graphics/renderers/atom.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,167 copying chemlab/graphics/renderers/arrow.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,167 copying chemlab/graphics/renderers/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers 2025-09-08T04:04:48,168 creating build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing 2025-09-08T04:04:48,168 copying chemlab/graphics/postprocessing/ssao.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing 2025-09-08T04:04:48,169 copying chemlab/graphics/postprocessing/outline.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing 2025-09-08T04:04:48,169 copying chemlab/graphics/postprocessing/noeffect.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing 2025-09-08T04:04:48,170 copying chemlab/graphics/postprocessing/glow.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing 2025-09-08T04:04:48,170 copying chemlab/graphics/postprocessing/gamma.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing 2025-09-08T04:04:48,171 copying chemlab/graphics/postprocessing/fxaa.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing 2025-09-08T04:04:48,171 copying chemlab/graphics/postprocessing/base.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing 2025-09-08T04:04:48,172 copying chemlab/graphics/postprocessing/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing 2025-09-08T04:04:48,173 creating build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,173 copying chemlab/graphics/renderers/shaders/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,174 creating build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,174 copying chemlab/graphics/postprocessing/shaders/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,175 creating build/lib.linux-armv7l-cpython-313/chemlab/db/localdb 2025-09-08T04:04:48,175 copying chemlab/db/localdb/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb 2025-09-08T04:04:48,176 creating build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,176 copying chemlab/db/localdb/molecule/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,176 creating build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/data 2025-09-08T04:04:48,177 copying chemlab/db/localdb/data/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/data 2025-09-08T04:04:48,177 creating build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,178 copying chemlab/core/spacegroup/spacegroup.py -> build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,178 copying chemlab/core/spacegroup/crystal.py -> build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,179 copying chemlab/core/spacegroup/cell.py -> build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,179 copying chemlab/core/spacegroup/__init__.py -> build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,200 copying chemlab/resources/show_icon.svg -> build/lib.linux-armv7l-cpython-313/chemlab/resources 2025-09-08T04:04:48,201 copying chemlab/resources/settings_icon.svg -> build/lib.linux-armv7l-cpython-313/chemlab/resources 2025-09-08T04:04:48,201 copying chemlab/resources/select_molecules.svg -> build/lib.linux-armv7l-cpython-313/chemlab/resources 2025-09-08T04:04:48,202 copying chemlab/resources/select_atoms.svg -> build/lib.linux-armv7l-cpython-313/chemlab/resources 2025-09-08T04:04:48,202 copying chemlab/resources/play_icon.svg -> build/lib.linux-armv7l-cpython-313/chemlab/resources 2025-09-08T04:04:48,203 copying chemlab/resources/pause_icon.svg -> build/lib.linux-armv7l-cpython-313/chemlab/resources 2025-09-08T04:04:48,203 copying chemlab/resources/hide_icon.svg -> build/lib.linux-armv7l-cpython-313/chemlab/resources 2025-09-08T04:04:48,204 copying chemlab/graphics/renderers/shaders/sphereimp.vert -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,205 copying chemlab/graphics/renderers/shaders/default_persp.vert -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,205 copying chemlab/graphics/renderers/shaders/cylinderimp.vert -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,206 copying chemlab/graphics/renderers/shaders/sphereimp_writenormal.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,206 copying chemlab/graphics/renderers/shaders/sphereimp.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,207 copying chemlab/graphics/renderers/shaders/no_light.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,207 copying chemlab/graphics/renderers/shaders/default_light.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,208 copying chemlab/graphics/renderers/shaders/cylinderimp.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/renderers/shaders 2025-09-08T04:04:48,208 copying chemlab/graphics/postprocessing/shaders/text.vert -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,209 copying chemlab/graphics/postprocessing/shaders/noeffect.vert -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,209 copying chemlab/graphics/postprocessing/shaders/text.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,210 copying chemlab/graphics/postprocessing/shaders/ssao_blur.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,210 copying chemlab/graphics/postprocessing/shaders/ssao.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,211 copying chemlab/graphics/postprocessing/shaders/outline.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,211 copying chemlab/graphics/postprocessing/shaders/noeffect.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,212 copying chemlab/graphics/postprocessing/shaders/glow3.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,212 copying chemlab/graphics/postprocessing/shaders/glow2.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,213 copying chemlab/graphics/postprocessing/shaders/glow1.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,213 copying chemlab/graphics/postprocessing/shaders/gamma.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,214 copying chemlab/graphics/postprocessing/shaders/fxaa.frag -> build/lib.linux-armv7l-cpython-313/chemlab/graphics/postprocessing/shaders 2025-09-08T04:04:48,215 copying chemlab/db/localdb/molecule/gromacs.urea.json -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,215 copying chemlab/db/localdb/molecule/gromacs.spce.json -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,216 copying chemlab/db/localdb/molecule/gromacs.spc.json -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,216 copying chemlab/db/localdb/molecule/gromacs.na+.json -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,217 copying chemlab/db/localdb/molecule/gromacs.li+.json -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,217 copying chemlab/db/localdb/molecule/gromacs.cl-.json -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,218 copying chemlab/db/localdb/molecule/gromacs.br-.json -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,218 copying chemlab/db/localdb/molecule/example.water.json -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,219 copying chemlab/db/localdb/molecule/example.norbornene.json -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/molecule 2025-09-08T04:04:48,219 copying chemlab/db/localdb/data/element.txt -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/data 2025-09-08T04:04:48,220 copying chemlab/db/localdb/data/covalent_radii.dat -> build/lib.linux-armv7l-cpython-313/chemlab/db/localdb/data 2025-09-08T04:04:48,221 copying chemlab/core/spacegroup/spacegroup.pyc -> build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,221 copying chemlab/core/spacegroup/spacegroup.dat -> build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,223 copying chemlab/core/spacegroup/crystal.pyc -> build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,224 copying chemlab/core/spacegroup/cell.pyc -> build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,225 copying chemlab/core/spacegroup/__init__.pyc -> build/lib.linux-armv7l-cpython-313/chemlab/core/spacegroup 2025-09-08T04:04:48,232 running build_ext 2025-09-08T04:04:48,861 Compiling chemlab/libs/ckdtree.pyx because it changed. 2025-09-08T04:04:48,862 [1/1] Cythonizing chemlab/libs/ckdtree.pyx 2025-09-08T04:04:50,639 warning: chemlab/libs/ckdtree.pyx:206:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,639 warning: chemlab/libs/ckdtree.pyx:206:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,715 warning: chemlab/libs/ckdtree.pyx:1414:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,715 warning: chemlab/libs/ckdtree.pyx:1414:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,716 warning: chemlab/libs/ckdtree.pyx:1447:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,716 warning: chemlab/libs/ckdtree.pyx:1447:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,718 warning: chemlab/libs/ckdtree.pyx:1581:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,718 warning: chemlab/libs/ckdtree.pyx:1581:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,720 warning: chemlab/libs/ckdtree.pyx:1627:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,720 warning: chemlab/libs/ckdtree.pyx:1627:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,722 warning: chemlab/libs/ckdtree.pyx:1768:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,722 warning: chemlab/libs/ckdtree.pyx:1768:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,726 warning: chemlab/libs/ckdtree.pyx:1953:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:50,726 warning: chemlab/libs/ckdtree.pyx:1953:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2025-09-08T04:04:51,117 warning: chemlab/libs/ckdtree.pyx:1214:24: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2025-09-08T04:04:51,120 warning: chemlab/libs/ckdtree.pyx:1224:33: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2025-09-08T04:04:51,284 Error compiling Cython file: 2025-09-08T04:04:51,284 ------------------------------------------------------------ 2025-09-08T04:04:51,284 ... 2025-09-08T04:04:51,284 r += dabs(x[i]-y[i]) 2025-09-08T04:04:51,284 if r>upperbound: 2025-09-08T04:04:51,285 return r 2025-09-08T04:04:51,285 else: 2025-09-08T04:04:51,285 for i in range(k): 2025-09-08T04:04:51,285 r += dabs(x[i]-y[i])**p 2025-09-08T04:04:51,285 ^ 2025-09-08T04:04:51,285 ------------------------------------------------------------ 2025-09-08T04:04:51,285 chemlab/libs/ckdtree.pyx:280:12: Cannot assign type 'npy_float64 complex' to 'float64_t' (alias of 'double') 2025-09-08T04:04:51,465 Traceback (most recent call last): 2025-09-08T04:04:51,473 File "", line 2, in 2025-09-08T04:04:51,473 exec(compile(''' 2025-09-08T04:04:51,473 ~~~~^^^^^^^^^^^^ 2025-09-08T04:04:51,473 # This is -- a caller that pip uses to run setup.py 2025-09-08T04:04:51,473 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T04:04:51,474 ...<32 lines>... 2025-09-08T04:04:51,474 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T04:04:51,474 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T04:04:51,474 ''' % ('/tmp/pip-wheel-az06znqw/chemlab_712f84daa9a5499f9d6da2c4bb01b792/setup.py',), "", "exec")) 2025-09-08T04:04:51,474 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T04:04:51,474 File "", line 35, in 2025-09-08T04:04:51,474 File "/tmp/pip-wheel-az06znqw/chemlab_712f84daa9a5499f9d6da2c4bb01b792/setup.py", line 20, in 2025-09-08T04:04:51,475 setup( 2025-09-08T04:04:51,475 ~~~~~^ 2025-09-08T04:04:51,475 name = "chemlab", 2025-09-08T04:04:51,475 ^^^^^^^^^^^^^^^^^ 2025-09-08T04:04:51,475 ...<44 lines>... 2025-09-08T04:04:51,475 url = "https://chemlab.github.com/chemlab" 2025-09-08T04:04:51,475 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T04:04:51,475 ) 2025-09-08T04:04:51,475 ^ 2025-09-08T04:04:51,475 File "/usr/local/lib/python3.13/dist-packages/setuptools/__init__.py", line 115, in setup 2025-09-08T04:04:51,476 return distutils.core.setup(**attrs) 2025-09-08T04:04:51,476 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T04:04:51,476 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-09-08T04:04:51,476 return run_commands(dist) 2025-09-08T04:04:51,476 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-09-08T04:04:51,476 dist.run_commands() 2025-09-08T04:04:51,476 ~~~~~~~~~~~~~~~~~^^ 2025-09-08T04:04:51,476 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-09-08T04:04:51,476 self.run_command(cmd) 2025-09-08T04:04:51,477 ~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T04:04:51,477 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T04:04:51,477 super().run_command(command) 2025-09-08T04:04:51,477 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T04:04:51,477 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T04:04:51,477 cmd_obj.run() 2025-09-08T04:04:51,477 ~~~~~~~~~~~^^ 2025-09-08T04:04:51,477 File "/usr/local/lib/python3.13/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-09-08T04:04:51,477 self.run_command("build") 2025-09-08T04:04:51,477 ~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T04:04:51,478 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T04:04:51,478 self.distribution.run_command(command) 2025-09-08T04:04:51,478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T04:04:51,478 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T04:04:51,478 super().run_command(command) 2025-09-08T04:04:51,478 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T04:04:51,478 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T04:04:51,478 cmd_obj.run() 2025-09-08T04:04:51,479 ~~~~~~~~~~~^^ 2025-09-08T04:04:51,479 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-09-08T04:04:51,479 self.run_command(cmd_name) 2025-09-08T04:04:51,479 ~~~~~~~~~~~~~~~~^^^^^^^^^^ 2025-09-08T04:04:51,479 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-09-08T04:04:51,479 self.distribution.run_command(command) 2025-09-08T04:04:51,479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T04:04:51,479 File "/usr/local/lib/python3.13/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-09-08T04:04:51,479 super().run_command(command) 2025-09-08T04:04:51,479 ~~~~~~~~~~~~~~~~~~~^^^^^^^^^ 2025-09-08T04:04:51,480 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-09-08T04:04:51,480 cmd_obj.run() 2025-09-08T04:04:51,480 ~~~~~~~~~~~^^ 2025-09-08T04:04:51,480 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 368, in run 2025-09-08T04:04:51,480 self.build_extensions() 2025-09-08T04:04:51,480 ~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T04:04:51,480 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 484, in build_extensions 2025-09-08T04:04:51,480 self._build_extensions_serial() 2025-09-08T04:04:51,480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T04:04:51,481 File "/usr/local/lib/python3.13/dist-packages/setuptools/_distutils/command/build_ext.py", line 510, in _build_extensions_serial 2025-09-08T04:04:51,481 self.build_extension(ext) 2025-09-08T04:04:51,481 ~~~~~~~~~~~~~~~~~~~~^^^^^ 2025-09-08T04:04:51,481 File "/usr/local/lib/python3.13/dist-packages/Cython/Distutils/build_ext.py", line 131, in build_extension 2025-09-08T04:04:51,481 new_ext = cythonize( 2025-09-08T04:04:51,481 ~~~~~~~~~^ 2025-09-08T04:04:51,481 ext,force=self.force, quiet=self.verbose == 0, **options 2025-09-08T04:04:51,481 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T04:04:51,481 )[0] 2025-09-08T04:04:51,482 ^ 2025-09-08T04:04:51,482 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T04:04:51,482 cythonize_one(*args) 2025-09-08T04:04:51,482 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T04:04:51,482 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T04:04:51,482 raise CompileError(None, pyx_file) 2025-09-08T04:04:51,482 Cython.Compiler.Errors.CompileError: chemlab/libs/ckdtree.pyx 2025-09-08T04:04:51,883 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T04:04:51,896 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T04:04:51,896 exec(compile('"'"''"'"''"'"' 2025-09-08T04:04:51,896 # This is -- a caller that pip uses to run setup.py 2025-09-08T04:04:51,896 # 2025-09-08T04:04:51,896 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T04:04:51,896 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T04:04:51,896 # - It provides a clear error message when setuptools is not installed. 2025-09-08T04:04:51,896 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T04:04:51,896 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T04:04:51,896 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T04:04:51,896 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T04:04:51,896 import os, sys, tokenize, traceback 2025-09-08T04:04:51,896 2025-09-08T04:04:51,896 try: 2025-09-08T04:04:51,896 import setuptools 2025-09-08T04:04:51,896 except ImportError: 2025-09-08T04:04:51,896 print( 2025-09-08T04:04:51,896 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T04:04:51,896 "the build environment with exception:", 2025-09-08T04:04:51,896 file=sys.stderr, 2025-09-08T04:04:51,896 ) 2025-09-08T04:04:51,896 traceback.print_exc() 2025-09-08T04:04:51,896 sys.exit(1) 2025-09-08T04:04:51,896 2025-09-08T04:04:51,896 __file__ = %r 2025-09-08T04:04:51,896 sys.argv[0] = __file__ 2025-09-08T04:04:51,896 2025-09-08T04:04:51,896 if os.path.exists(__file__): 2025-09-08T04:04:51,896 filename = __file__ 2025-09-08T04:04:51,896 with tokenize.open(__file__) as f: 2025-09-08T04:04:51,896 setup_py_code = f.read() 2025-09-08T04:04:51,896 else: 2025-09-08T04:04:51,896 filename = "" 2025-09-08T04:04:51,896 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T04:04:51,896 2025-09-08T04:04:51,896 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T04:04:51,896 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-az06znqw/chemlab_712f84daa9a5499f9d6da2c4bb01b792/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-s9unjp0x[/] 2025-09-08T04:04:51,896 [bold magenta]cwd[/]: /tmp/pip-wheel-az06znqw/chemlab_712f84daa9a5499f9d6da2c4bb01b792/ 2025-09-08T04:04:51,896 Building wheel for chemlab (setup.py): finished with status 'error' 2025-09-08T04:04:51,897 ERROR: Failed building wheel for chemlab 2025-09-08T04:04:51,898 Running setup.py clean for chemlab 2025-09-08T04:04:51,898 Running command python setup.py clean 2025-09-08T04:04:53,014 running clean 2025-09-08T04:04:53,153 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T04:04:53,160 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T04:04:53,160 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T04:04:53,161 removing 'build' 2025-09-08T04:04:53,281 Failed to build chemlab 2025-09-08T04:04:53,281 ERROR: Failed to build one or more wheels 2025-09-08T04:04:53,282 Exception information: 2025-09-08T04:04:53,282 Traceback (most recent call last): 2025-09-08T04:04:53,282 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T04:04:53,282 status = _inner_run() 2025-09-08T04:04:53,282 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T04:04:53,282 return self.run(options, args) 2025-09-08T04:04:53,282 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T04:04:53,282 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T04:04:53,282 return func(self, options, args) 2025-09-08T04:04:53,282 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T04:04:53,282 raise CommandError("Failed to build one or more wheels") 2025-09-08T04:04:53,282 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T04:04:53,287 Removed build tracker: '/tmp/pip-build-tracker-yqj0dccd'