2025-09-08T03:59:19,102 Created temporary directory: /tmp/pip-build-tracker-kjyzfjmv
2025-09-08T03:59:19,102 Initialized build tracking at /tmp/pip-build-tracker-kjyzfjmv
2025-09-08T03:59:19,103 Created build tracker: /tmp/pip-build-tracker-kjyzfjmv
2025-09-08T03:59:19,103 Entered build tracker: /tmp/pip-build-tracker-kjyzfjmv
2025-09-08T03:59:19,103 Created temporary directory: /tmp/pip-wheel-8tapybj8
2025-09-08T03:59:19,106 Created temporary directory: /tmp/pip-ephem-wheel-cache-_k3iz1wp
2025-09-08T03:59:19,167 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T03:59:19,169 2 location(s) to search for versions of python-libsbml:
2025-09-08T03:59:19,169 * https://pypi.org/simple/python-libsbml/
2025-09-08T03:59:19,169 * https://www.piwheels.org/simple/python-libsbml/
2025-09-08T03:59:19,169 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2025-09-08T03:59:19,170 Getting page https://pypi.org/simple/python-libsbml/
2025-09-08T03:59:19,171 Found index url https://pypi.org/simple/
2025-09-08T03:59:19,266 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2025-09-08T03:59:19,348   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2025-09-08T03:59:19,348   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2025-09-08T03:59:19,349   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2025-09-08T03:59:19,349   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2025-09-08T03:59:19,349   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2025-09-08T03:59:19,349   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,349   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2025-09-08T03:59:19,350   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,350   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,350   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,350   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,350   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,350   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,352   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,352   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,352   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,352   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,352   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,352   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,352   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,353   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,353   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,353   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,353   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,353   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,353   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,353   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,354   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,354   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,354   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,354   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,354   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,354   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,354   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2025-09-08T03:59:19,355   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,355   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,355   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2025-09-08T03:59:19,355   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,355   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,355   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,356   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,356   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,356   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,356   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,356   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,356   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,356   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,357   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,357   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,357   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,357   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,357   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,357   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,357   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,358   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,358   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,358   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,358   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,358   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,358   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,358   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,359   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,359   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,359   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,359   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2025-09-08T03:59:19,359   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,359   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,359   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,360   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,360   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,360   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,360   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,360   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,360   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,360   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,361   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,361   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,361   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,361   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,361   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,361   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,361   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,362   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,362   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,362   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,362   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,362   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,362   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,362   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2025-09-08T03:59:19,363   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,363   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,363   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,363   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,363   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,363   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,363   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,364   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,364   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,364   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,364   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,364   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,364   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,364   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,365   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,365   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,365   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,365   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,365   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,365   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,365   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,366   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2025-09-08T03:59:19,366   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,366   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,366   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,366   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,366   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,366   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,367   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,367   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,367   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,367   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,367   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,367   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,367   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,369   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,369   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,369   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,369   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,369   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,369   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,369   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,370   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,370   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,370   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,370   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,370   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,370   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,370   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,371   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,371   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,371   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,371   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,371   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,371   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2025-09-08T03:59:19,371   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,372   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,372   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,372   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,372   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,372   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,372   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,372   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,373   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,373   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,373   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,373   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,373   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,373   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,373   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,374   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,374   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,374   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,374   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,374   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,374   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,374   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,376   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,376   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2025-09-08T03:59:19,376   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,376   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,376   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,376   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,377   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,377   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,377   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,377   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,377   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,378   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,378   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,378   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,378   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,378   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,378   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,378   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,380   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,380   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,380   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,380   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,380   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,380   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,380   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,381   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,381   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,381   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,381   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,381   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,381   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,381   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,383   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,383   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,383   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,383   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,383   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,383   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,383   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,383   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,384   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,384   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,384   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,384   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,384   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,384   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,384   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,385   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,385   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,385   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,385   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,385   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,385   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,385   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,386   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,386   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,386   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,386   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,386   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,386   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,386   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,387   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,387   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,387   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,387   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,387   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,387   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,387   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,388   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,388   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,388   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,388   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,388   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,388   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,388   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,388   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,389   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,389   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,389   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,389   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,389   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,389   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,389   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,390   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,390   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,390   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,390   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,390   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,390   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,390   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,392   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,392   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,392   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,392   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,392   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,392   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,392   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,393   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,393   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,393   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,393   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,393   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,393   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,393   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,394   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,394   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,394   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,394   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,394   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,394   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,394   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,394   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,395   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,395   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,395   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,395   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,395   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,395   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,395   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,396   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,396   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,396   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,396   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,396   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,396   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,396   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,398   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2025-09-08T03:59:19,398   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,398   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,398   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,398   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,398   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,400   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,400   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,400   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,400   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,400   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,400   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,400   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,401   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,401   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,401   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,401   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,401   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,401   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,401   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,403   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,403   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,403   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,403   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,403   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,403   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,403   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,404   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,404   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,404   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,404   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,404   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,404   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,404   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2025-09-08T03:59:19,405   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,405   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,405   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,405   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,405   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,405   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,405   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,406   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,406   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,406   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,406   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,406   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,406   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,406   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,407   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,407   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,407   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,407   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,407   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,407   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,407   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,408   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,408   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,408   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,408   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,408   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,408   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,408   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,409   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,409   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,409   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,409   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,409   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,409   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,409   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,411   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,411   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,411   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,411   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,411   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,411   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2025-09-08T03:59:19,412   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,412   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,412   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,412   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,412   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,412   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,412   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,413   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,413   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,413   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,413   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,413   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,413   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,413   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,414   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,414   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,414   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,414   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,414   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,414   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,414   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,416   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,416   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,416   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,416   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,416   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,416   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,416   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,417   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,417   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,417   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,417   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,417   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,417   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,417   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,418   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,418   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,418   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,418   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,418   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,418   Found link https://files.pythonhosted.org/packages/b5/47/7a6063cb8de95b786a93ad3cef3760a72ca2f344db333c1694b7abd228b7/python-libsbml-5.20.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.2
2025-09-08T03:59:19,419   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/04/26903a22496521f7d74ba196d9cc5657ed9349c68deb29766081d9e50414/python_libsbml-5.20.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,419   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3d/45/98defd138e1901f301b49dd88290617a1d9d9d0e8e595ab515380429773a/python_libsbml-5.20.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,419   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/c6/2e18caa75409aa36d434f9d166f8624d9b7b8be63f959a9598bffa504e3d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,419   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/8f/2e6b389d653ab757abc10231f6e31f842fc3443c03429243d583134a88b6/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,419   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/7f/6788f019fd747df56978e3e76a871541e1986fc32fbad7f9b2d1a044125d/python_libsbml-5.20.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,419   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/91/dabd7be439071b41738e023671cefb6585bc5c5c87412462355615d51529/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,419   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/53/ac/3a753b37ce8d257b7d15d011368b99595a533d409c6d1e576d8b2e4e95f0/python_libsbml-5.20.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,420   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/3a/f45a1ce0190e30a3445cf8084e127f09607746dc1ae6af1897a33bfacaac/python_libsbml-5.20.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,420   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/9991bb8e94f9bdec1429634355471845a6a3dd1cd87ef25b414c8e6f4525/python_libsbml-5.20.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,420   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/3f/61a99c450a4cce58ac209f73489a899d771e575a0cd4c78af239d087d51a/python_libsbml-5.20.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,420   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/76/be1c1d1d631048857c1251385f1ea4e98434ac51292df86bfefc95c75f31/python_libsbml-5.20.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,420   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/63/d668630e42dacce62517fd5e12f220813057a29e50fca69d9009fac89332/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,420   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/74/e38a3ff2e270458108a7ff73df4017320634ba58af0dce728f74910bddc0/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,420   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/65/0040257a7dac93d053643baa798919df5368c19b661699e03a11897ab5f9/python_libsbml-5.20.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,421   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/57/0e/650eb72f69d0d77b11bb85bf5f533ab8561910fd263cab7ba1bc08a2fc5e/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,421   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c5/3ac9cf395c7ff268eebc649dd0a8d540772c5ab516e2ac9fc45cad43f8b7/python_libsbml-5.20.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,421   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/e5/331030fb11adce42e0920dd66451dbd78794d53bc4d3b4bb42e88f59d78b/python_libsbml-5.20.2-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,421   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ac/45/d6188b56f4928a1ba7a1f55ee0153ab7e8b03f4538a6235c2cd95a3d1a07/python_libsbml-5.20.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,421   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/22/58/3e9ffea465efca2b604e3d9a05e599d4bf3034f9bed3a11647821e1281b0/python_libsbml-5.20.2-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,421   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ed/7c/07e507837f43eeffc97b7a3d0e2f975c53455cbdfbf75ab0a207ae286173/python_libsbml-5.20.2-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,421   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/db/96d432ed90795b06677cb2fb1173ada6af6bb8b490889994edfb7d459484/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,421   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/72/6d50597e242f809325d800e5298f914b1502f005f9250f5ed1924b91201d/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,422   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/51/c34bb7e4cf57e935b245769fe43953b10e8275a5254964bd77c6c24a2909/python_libsbml-5.20.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,422   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/92/6705ad6d9f565efcc903f2e05c525fab20e041637d58789e64e75ce554f4/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,422   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/3e/f4e038e6eda9583dbc301655feca81fffe7e47d2472d1aa3994ced906fcf/python_libsbml-5.20.2-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,422   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/05/19694615bdbce9662022a7e4cb1c9a32827e2b6333369d82fc229b570be4/python_libsbml-5.20.2-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,422   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/dc/ce7fd468c172856d691c02cabd70869fd0cf096ef27514b1926a4f985006/python_libsbml-5.20.2-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,422   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/74/218dd9f207049d9bc314f4e721edac2b542a73275db7acf599372086152a/python_libsbml-5.20.2-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,422   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/3b/08a0aea25adae6be135f663849c3877fc7766501ee7b0f2765699b9c6661/python_libsbml-5.20.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,423   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e6/1b/d623d8731b75797ac27d51a408f785b84b1fef320b0bf25cbe5e156dc53b/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,423   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/fe/f1df672a5ee732cd2d137672d2deafe97c0677670e928d4c225071f8c079/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,423   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/da/3631b93a3326fe174ee1507d113a4f3b5d3e62ebe5d717ddadb2725c726d/python_libsbml-5.20.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,423   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/56/c6cdf2f7913be720110279b1c1c0f12fdc8ddf1b4494798d35ba78afe0b5/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,423   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/95/e3b6b579c4942a6f2e476454cc18c3f8bd703eac1741aed2e8d1a000d892/python_libsbml-5.20.2-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,423   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/6f/c1e9afda82db0e6243e9e11c95a2e8276e59669b129cffc1e788b56baac4/python_libsbml-5.20.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,423   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/88/bb18a417cafaffecf7545454eaf8d66ea505b050146780d04584429d09ef/python_libsbml-5.20.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,424   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/c8/350c41479d55ba7faa7684a47470aad4d7a64187e13fffb63bdf64f1c6b1/python_libsbml-5.20.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,424   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fa/28/920e87bd0ac86ce4fa39405e04531b5aef65e81bd2692cf6d32d74ab1f6e/python_libsbml-5.20.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,424   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/52/34006a61844de53a1343e6424bcbfbfba7a69ecf604e298b09719cf3f776/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,424   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/51/06c2893ae9924ab7ab969438354397180c15517381e2407ffeee01f2ffd1/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,424   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/a8/f692640f8dd26dd80b5b1e52d35288cd66dce3aef45ce33389b4908b8a96/python_libsbml-5.20.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,424   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/9a/a23ed03cc9843587c159ed7dfe87a0fc5981620a8c4239d0b7cb5d1ced3d/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,424   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/dd/5ba423e743e6a1248f7a260addd96ae0ed8877a9d3fc673cc9fc04d1e583/python_libsbml-5.20.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/2e/1aa54758d80c73dcad2ac7be72f94c2e6a80231e41cc4f181e756c312ff8/python_libsbml-5.20.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/66/e9/3aa778c48058f73596a284c9da221edb0f4064fd0c6718c5a2b090376291/python_libsbml-5.20.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/3e/40f8ddd356ac0da9d7a68f7e76fe2d1f1b6e493ac1d7d84e85c7db0a5151/python_libsbml-5.20.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/8e/412f7feb28529a9d74f2f268d19e339215453b2ddc403fa722543327e9c4/python_libsbml-5.20.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/c1/b6224136f86d061d660706b6baff0aca9c5b93b9065b27ce5e60679b8c32/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/a9/d826781ff9cba1fc25819f0b0784190fb0aed6cedd017f6d275203fa9f20/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/d6/f81f1223273281bf4926750f7ffe3ce8e4b7b6b03456fe9fe40e1d48ce9f/python_libsbml-5.20.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/78/bcbfa20734ed0b28b76f9237f4ff8fc786d8e97d43d402bcb06e39f3d7e9/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,426   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/f0/8a9d7920dce46184777baa3b5b368ebf09de0a6c4408def6d33797aff2fc/python_libsbml-5.20.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,426   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/36/4df59c750ded7484a98b90b3265d884b993c1eb636c394885c5fdaa54c88/python_libsbml-5.20.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,426   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/65/9dae381f8856cd9bc8b84282ce79179a410ae56468120935b592168425f0/python_libsbml-5.20.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,426   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/c7/e8b736a73a77b9f445bf4ab3d21e944f5c3b9fe09b4e13545458bfa3032f/python_libsbml-5.20.2-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,426   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/94/991c7ca6a639d5dde00928ed1b1be8afeba72c1afd54b229f47b55bbfab9/python_libsbml-5.20.2-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,426   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/fc/79e5a26756c3e7d93085b18d2cc4dcf6aa083a3bd9a6929829ee0dc2fd53/python_libsbml-5.20.2-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,427   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/c1/1cc74cd93fdd9a80f280fed49ac11860d493cf0b00f5ae423dec0c56ed55/python_libsbml-5.20.2-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,427   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/16/ca/572dd53742081b13f59f57a4f114d6fd32ee177cf7cff45eadc38b26e70e/python_libsbml-5.20.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,427   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/16/b92b5d1607b08b29df6636cef1d3d0c4e6ab0a7af8abc858e6564c1750a4/python_libsbml-5.20.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,427   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/14/60557f93f37dbdd0a58796e0fd832b6cc3e8194caaadc7a4e78d83ef15e6/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,427   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/91/968a70814dceb1a1002c313ac80de94c6515c6ed9d580d569371581ec549/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,427   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/3f/b7bb4c06c4de558a71117a18d5e59f30f0719e43244c7e0e9010370eff11/python_libsbml-5.20.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,427   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/10/33/78752be98d7cb891266d15758057efc3ac392ffa5203a2947506fa15856f/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/20/429e411767983fd38d520470acf8c34d08299d25bf05e6456210796256a3/python_libsbml-5.20.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/0f/558289f95919730d7e341337b14d880c89912277550f03a3f78e585706b3/python_libsbml-5.20.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/5a/f435f7a12f11f1cc8cf505452814f21cde6ef6d8e2f75a4a323ab47bd0da/python_libsbml-5.20.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/5a/9b2d31a91f5e94ff44bca259fb8ea57dab7e2cadd66d54888dedbd7efdb7/python_libsbml-5.20.4-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/e4/79a57f56cc0fcb9ccf74a480a2102a5b91109958fbd830f92c2e6435e905/python_libsbml-5.20.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/a7/18dbc2129f0187cb00404de81ff51fd7a907a11dedfed28c10d3b03eac32/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/91/53c5c6a005eb529fc844ef5cc6f079cd85070d2a2e96227cd3644eceec88/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/4b/f11aab01f1483ca770ef7af61a41005a1fc5a3b1004c097b0a92e7046e61/python_libsbml-5.20.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,429   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/7f/57e791cf4495ba2e8e07386ee070373eb925cbb7ffb80f4dc2db42e1f7ac/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,429   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/13/a97e56c822875a7ea616277e1801e2bea3f536ecbb292297cf947bb11bee/python_libsbml-5.20.4-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,429   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/24/53784997e5bae3def9e6279fdc71c70c59e4efeea8a31adce5816778d2e1/python_libsbml-5.20.4-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,429   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/15/bd/6838154413a83a8f6dc5b60bafd80ba73f1554c47c99f39cfe958c64d907/python_libsbml-5.20.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,429   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/6c/43a8b4e49ac8885d9a9ae856c8a442864d987a40e82b32358ea718a75441/python_libsbml-5.20.4-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,429   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4d/3bad65cbb54ba14d5d983874d47d2352efe6f45cd737573d64d6091980ba/python_libsbml-5.20.4-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,429   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/db/3f9f75d42106144df9cec628a4c9f24a024256372f7155f24f4608932c14/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,430   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/0a/a0ac99ea56235166b5441bd9c605fbbfa5130f8611a725da6368d628d4a4/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,430   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/d3/9db568a391f82ec47da42ae557f3e429acfee6364b205a06ae2ccb602af1/python_libsbml-5.20.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,430   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/b2/3dae1e7f2d5742f1b9aae565aea55d2a978059c324a891a9bfd921b75024/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,430   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/48/79f5737c66329717f1c98f7ffad4af5bcf053477ef76f4e65c71b20c573e/python_libsbml-5.20.4-cp312-cp312-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,430   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/28/b5049445492235606844c1d8e88317bd0545417ce1c268a4c34f98946d3a/python_libsbml-5.20.4-cp312-cp312-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,430   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/ee/4bbb01a4c7ce916fc2f26d836aa5aa0e3a90f9e526f8d6effefdf06079bc/python_libsbml-5.20.4-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,430   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/25/ec5b2921781757dbfc030f6b4502580662e156223f1358676858a27cf9b9/python_libsbml-5.20.4-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,431   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/28/cbd7a16304666555af50adafceb85796c633fecee649e72f2fef8b34d296/python_libsbml-5.20.4-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,431   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7c/1db267adce246d8b18d46d80a4cd4efb8ee0f56eb25d42e4a4a27474166c/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,431   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/78/5dd03cddfaa1a2ed43b32b984135b8fe0469835eaaf3a432224fc2347862/python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,431   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5c/c4/800ff7ccb91390d67eca1bf4e5fd479f201e849bd4ac6aee39782f395127/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,431   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/ac/d6607f3ce489b82b4a51f86172b48ae6c4d8f278fa46fd4117fffe6097c0/python_libsbml-5.20.4-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,431   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/17/0a4504d7851a8b6ad704148e72e00d4fcd8172a7e4b02b09f521632ceb35/python_libsbml-5.20.4-cp313-cp313-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,431   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/80/bf/e94a0cee6f9c9413d070b4285ba055a44e8b912426fed66fb0bb26ab0818/python_libsbml-5.20.4-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,432   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/a7/7f319330d9eabacbf32b0ed9bde3f8387088548f62756b4d14048c830ffe/python_libsbml-5.20.4-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,432   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/ac/a5fba140496a4c18259ceaa81c3292a139d626a791f9c621cd733f64f727/python_libsbml-5.20.4-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,432   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/ee/ee8fb79daf7133def31a34eb5efe53205924b5b9c640d4febbff1fe6ca64/python_libsbml-5.20.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,432   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/90/c7/1a6998b0cee736c2380345bdc27ae2bd8840c806cb36833028667a3b2605/python_libsbml-5.20.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,432   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/68/24d9b592da6a5416c533c659d208fed08ddcc10b442b1d1d2ee270a915aa/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,432   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/1d/75a7565e1af082e72b7a63fa4f186600a297ece167db2360627ebb71193a/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,432   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/6b/b1ee160b127ca459beb2fcf51285208fc223bcc40b1bc6ac43879352d632/python_libsbml-5.20.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,433   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/62/f0c26ed535543f6bfb205e87e4418c3c37c12d7825fd30f247f0132f08a3/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,433   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/e6/d8f7554548e6fa79691301726fc9d6c3e0eedadbfb65992e1d917ab4b4f2/python_libsbml-5.20.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,433   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/0d/686219eb0c02627571575cc73eb46dcfd1c9a43bd97fae491da105aa84a3/python_libsbml-5.20.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,433   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/5f/92323c94c8a96c498eca5673aa39228f48984a5f5443d887a86ceb9a2e62/python_libsbml-5.20.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,433   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/94/47/c55da9ac26a7992f720000338f92b8eeb87c50fced41eb7cf56a6e9b4c67/python_libsbml-5.20.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,433   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f7/e7af5fa8941eeef5883eab1c6dc241f58950715c72f793e4d89f04cb51b0/python_libsbml-5.20.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,433   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/d1/32b0f68766364b51adcf147717b4f56f374df7ae78a08436e8719f6df888/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,433   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/be/10f32360a55cb8b1395b2ba26476455cec3a870b518eb0d910e277f20fc8/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,434   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/c9/5e56a08bf385080b9a9a1b8e41eb04c4a4bd649a7f6eb46dc5f72c8db420/python_libsbml-5.20.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,434   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/64/f8404da7ba27cb4905df4713048e8194a9c711c7dae312d33b2b3a821bd6/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,434   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e8/10/ff8ab1d3a721b60827124c14f5252b7d332f3351c1e517ca4d429f1ba4c2/python_libsbml-5.20.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,434   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/dd/659e49b36e545bdecdc3394aae0a51d55655fb7e6a5e122eb417e2ea17ea/python_libsbml-5.20.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,434   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/f4/93b12b7433288cd57c91d66401cc029fed14163b47753fdeecb7b9ec72e8/python_libsbml-5.20.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,434   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/39/85ff81ad6a098f069e6680accd97659d02efc62c32a81416717e65c00f09/python_libsbml-5.20.4-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,434   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/be/910bbd6c0c8669be8df6764bee0e6c39729c0ab6212834ecf68d24ea5be8/python_libsbml-5.20.4-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,435   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/db/7cb8f4a9d6e4d6a96072df1f409414d5628f0aa58dc91a45c601e3d711f1/python_libsbml-5.20.4-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,435   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/38/2d9c53cd3e4f3d2bb3e0dbea03ec7ec9de4507ba6e5ce73b1982e858298f/python_libsbml-5.20.4-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,435   Found link https://files.pythonhosted.org/packages/5d/74/1bf1b9883de7bc928e1727e4502c690ec09a8f7b9f2d53edb8fa452d23c3/python_libsbml-5.20.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.4
2025-09-08T03:59:19,435   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/56/40b610acdbde447a90b91503c81d5cc591dec29815cd427a26280fad5c84/python_libsbml-5.20.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,435   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/72/96520783019f16ec6b0189b66ea8fea7f43d11c269feaf68c42fd6c79500/python_libsbml-5.20.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,435   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e1/9f/66466d20861c14bdc18fc393bb065da7da9e0a3972b5533557f956ac1d0c/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,436   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/36/a1e96927d948b9d5bc1b3e57ea6154677c06e234ad190a2f726c331465c8/python_libsbml-5.20.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,436   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/51/da98b3adc80c3d89a9b997b16d4a6448207d26e15c99bf464c4decbe852a/python_libsbml-5.20.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,436   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/ef/d44ea1ff0042439c29cc864c353e1ca9a062a753d5e8288ca6e6e4ba853c/python_libsbml-5.20.5-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,436   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/66/d5fc713d4a369d17522e3816be5234289cd27fc731c112ce698387382d89/python_libsbml-5.20.5-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,436   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/3f/199d494311da757de5a94404e88a0c6bbae99e64865c98dcf415b03d595a/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,436   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/17/7f1f0ad2f3b0054d1e762b6cbdd25153fd904135ce07561b0fd79dd83d90/python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,436   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/a5/ef3cdd88c805181ed3da79a9ec85ee707872bacb7bc1cbc736efa9c3cd78/python_libsbml-5.20.5-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a6/d6/269bd9d7dfb69025e98c7afe2285a9c6d66b980209bbdbd54ffd995c592f/python_libsbml-5.20.5-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/c0/3ba180b1d18c5d1427e3772fa1402f72ce6edaac345e4aab14af61f50916/python_libsbml-5.20.5-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/7f/59669e43e75428a6e740bb11bf40f0a5f4afc7a6604f7071560dd1f7fab3/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/02/696c5a0dc72a3949224207534219afe54951381f2ad4ee1df5e03833edbe/python_libsbml-5.20.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/68/528c874841022d90fc93854197d327aab7c65b36c8a8d954a5280e9520b4/python_libsbml-5.20.5-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/8f/e98feeb2d0a6ef95716123cb808b25723dabbcde5d0f555e89360be1d8d6/python_libsbml-5.20.5-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/45/2e64419d50428b67a7592850121afee11f83448781506bbc389f737c2597/python_libsbml-5.20.5-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/8f/3e211bbdaf69ca0c789530353cdf02711f95e70ac8581a08ce0c45903c80/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,438   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/92/a8a86812776326ffdfac6c5addc7581f6399f7b825b31dd90e211f63739f/python_libsbml-5.20.5-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,438   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/49/70f6288db3ce3ef006627318d518235836c47b34e4aa7716760e33b639b9/python_libsbml-5.20.5-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,438   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/ed/28754b6c5043e55437f0175dd5f4132ff8ace0af32040c129f564ba88fe8/python_libsbml-5.20.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,438   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f2/678c5dd13f67c229c5a4edd57fefaa653311bb2bfeaf47ed02e9671af61f/python_libsbml-5.20.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,438   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/92/41/c0d5007db0988a242562f8ef8cf303302c70497effda82c6459dce4b600c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,438   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2c/5d/bb31237034edc0654363ce7e0d667cb0303da88def3083ad538b03cdee7c/python_libsbml-5.20.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,438   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/d2/c0d8c2166310a5c6fb201c05f9817fc66f17bbb3d70bde3faae15016eec1/python_libsbml-5.20.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2025-09-08T03:59:19,439   Found link https://files.pythonhosted.org/packages/5d/4b/b49fe7384cc9e727e88c58713edc3b4a1c469673937d8d31cafe23261120/python_libsbml-5.20.5.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.5
2025-09-08T03:59:19,439 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2025-09-08T03:59:19,439 Getting page https://www.piwheels.org/simple/python-libsbml/
2025-09-08T03:59:19,440 Found index url https://www.piwheels.org/simple/
2025-09-08T03:59:19,524 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2025-09-08T03:59:19,545   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,545   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv7l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,545   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv6l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,546   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv7l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,546   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp311-cp311-linux_armv6l.whl#sha256=4faec8be0d9c1f8accb40055cbf08bb3f266b740242ce421e848f1de997d87db (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,546   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp311-cp311-linux_armv7l.whl#sha256=4faec8be0d9c1f8accb40055cbf08bb3f266b740242ce421e848f1de997d87db (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,546   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv6l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,546   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv7l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,546   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv6l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,546   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv7l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,547   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,547   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv7l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,547   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv6l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,547   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv7l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,547   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv6l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,547   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv7l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,547   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv6l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,548   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv7l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,548   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv6l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,548   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv7l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,548   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv7l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,548   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv6l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,548   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv7l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,548   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv6l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,549   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv6l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,549   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv7l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,549   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv6l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,549   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv7l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,549   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv6l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,549   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv7l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,549   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv7l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,549   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv6l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,550   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp311-cp311-linux_armv6l.whl#sha256=99f3bc173559c37c1f788969eb598026cafc9e944158e2023b737c9101dfcafa (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,550   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp311-cp311-linux_armv7l.whl#sha256=99f3bc173559c37c1f788969eb598026cafc9e944158e2023b737c9101dfcafa (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,550   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp39-cp39-linux_armv6l.whl#sha256=03f09a2a301fb92a748c27cfaca2c913aa216f5b77f0d6615cc6261c06a5b8f1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,550   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp39-cp39-linux_armv7l.whl#sha256=03f09a2a301fb92a748c27cfaca2c913aa216f5b77f0d6615cc6261c06a5b8f1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,550   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,550   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,550   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv6l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,551   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv7l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,551   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp311-cp311-linux_armv6l.whl#sha256=fd840f49adf057ea4cb0cf91aa5289ecaf17045a69d326cded46d006149ea6f6 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,551   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp311-cp311-linux_armv7l.whl#sha256=fd840f49adf057ea4cb0cf91aa5289ecaf17045a69d326cded46d006149ea6f6 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,551   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,551   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,551   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv6l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,551   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,552   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,552   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,552   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,552   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,552   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,552   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,552   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv6l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,552   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv7l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,553   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv6l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,553   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,553   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp313-cp313-linux_armv6l.whl#sha256=754444f02719fb0c2031d7831da0f9a201cf15ca5788b5cb80271c51d93dbe2e (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,553   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp313-cp313-linux_armv7l.whl#sha256=754444f02719fb0c2031d7831da0f9a201cf15ca5788b5cb80271c51d93dbe2e (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,553   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,553   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,553   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,554   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,554   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv6l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,554   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp311-cp311-linux_armv7l.whl#sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,554   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,554   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,554   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,554   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,554   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,555   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,555   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv6l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,555   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,555   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,555   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,555   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp313-cp313-linux_armv6l.whl#sha256=4116db01590acb483d09a7db34dd504438979b6ecb01749ea563f941a41973c9 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,555   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp313-cp313-linux_armv7l.whl#sha256=4116db01590acb483d09a7db34dd504438979b6ecb01749ea563f941a41973c9 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,556   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,556   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,556   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,556   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,556   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv6l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,556   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv7l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,556   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,557   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,557   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp313-cp313-linux_armv6l.whl#sha256=6bff6959ed7c7720928e60e4bf6c80864e16dd558367d38f266ca4c633177080 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,557   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp313-cp313-linux_armv7l.whl#sha256=6bff6959ed7c7720928e60e4bf6c80864e16dd558367d38f266ca4c633177080 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,557   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,557   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,557   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,557   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,558   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv6l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,558   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv7l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,558   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,558   Skipping link: No binaries permitted for python-libsbml: https://archive1.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,558   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp313-cp313-linux_armv6l.whl#sha256=5a08e55a4cf51bb07abeb527f2cb4cb54b7cb171d894bea2f34996775f4ef351 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,558   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp313-cp313-linux_armv7l.whl#sha256=5a08e55a4cf51bb07abeb527f2cb4cb54b7cb171d894bea2f34996775f4ef351 (from https://www.piwheels.org/simple/python-libsbml/)
2025-09-08T03:59:19,558 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2025-09-08T03:59:19,559 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2025-09-08T03:59:19,582 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2025-09-08T03:59:19,583 Collecting python-libsbml==5.11.0
2025-09-08T03:59:19,585   Created temporary directory: /tmp/pip-unpack-d4a0bdo7
2025-09-08T03:59:19,644   Downloading python-libsbml-5.11.0.tar.gz (3.6 MB)
2025-09-08T03:59:20,758   Added python-libsbml==5.11.0 from https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz to build tracker '/tmp/pip-build-tracker-kjyzfjmv'
2025-09-08T03:59:20,759   Running setup.py (path:/tmp/pip-wheel-8tapybj8/python-libsbml_a03b32e8100648bfb73e86f74a7cd106/setup.py) egg_info for package python-libsbml
2025-09-08T03:59:20,759   Created temporary directory: /tmp/pip-pip-egg-info-emutzutv
2025-09-08T03:59:20,760   Preparing metadata (setup.py): started
2025-09-08T03:59:20,760   Running command python setup.py egg_info
2025-09-08T03:59:21,277   /tmp/pip-wheel-8tapybj8/python-libsbml_a03b32e8100648bfb73e86f74a7cd106/setup.py:78: SyntaxWarning: invalid escape sequence '\D'
2025-09-08T03:59:21,278     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-08T03:59:22,343   Preparing metadata (setup.py): finished with status 'done'
2025-09-08T03:59:22,347   Source in /tmp/pip-wheel-8tapybj8/python-libsbml_a03b32e8100648bfb73e86f74a7cd106 has version 5.11.0, which satisfies requirement python-libsbml==5.11.0 from https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz
2025-09-08T03:59:22,348   Removed python-libsbml==5.11.0 from https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz from build tracker '/tmp/pip-build-tracker-kjyzfjmv'
2025-09-08T03:59:22,351 Created temporary directory: /tmp/pip-unpack-cy689p2w
2025-09-08T03:59:22,351 Created temporary directory: /tmp/pip-unpack-p33i3f_g
2025-09-08T03:59:22,351 Building wheels for collected packages: python-libsbml
2025-09-08T03:59:22,352   Created temporary directory: /tmp/pip-wheel-kq7ofh_1
2025-09-08T03:59:22,353   DEPRECATION: Building 'python-libsbml' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'python-libsbml'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-08T03:59:22,354   Building wheel for python-libsbml (setup.py): started
2025-09-08T03:59:22,354   Destination directory: /tmp/pip-wheel-kq7ofh_1
2025-09-08T03:59:22,354   Running command python setup.py bdist_wheel
2025-09-08T03:59:22,876   /tmp/pip-wheel-8tapybj8/python-libsbml_a03b32e8100648bfb73e86f74a7cd106/setup.py:78: SyntaxWarning: invalid escape sequence '\D'
2025-09-08T03:59:22,876     dependency_dir = 'D:\Development\libsbml_dependencies\install_vs9_release_x86'
2025-09-08T03:59:28,037   ./base/libsbml_wrap.cpp:3179:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:28,037    3179 |     UnknownExceptionHandler(std::unexpected_handler nh = handler) {
2025-09-08T03:59:28,037         |                                                                 ^
2025-09-08T03:59:28,043   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2025-09-08T03:59:28,044   ./base/libsbml_wrap.cpp:3180:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:28,044    3180 |       old = std::set_unexpected(nh);
2025-09-08T03:59:28,044         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T03:59:28,044   In file included from /usr/include/c++/14/ios:41,
2025-09-08T03:59:28,044                    from /usr/include/c++/14/ostream:40,
2025-09-08T03:59:28,044                    from /usr/include/c++/14/iostream:41,
2025-09-08T03:59:28,044                    from ./base/libsbml_wrap.cpp:2949:
2025-09-08T03:59:28,044   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-08T03:59:28,044      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-08T03:59:28,045         |                      ^~~~~~~~~~~~~~
2025-09-08T03:59:28,045   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2025-09-08T03:59:28,045   ./base/libsbml_wrap.cpp:3184:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:28,045    3184 |       std::set_unexpected(old);
2025-09-08T03:59:28,045         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T03:59:28,045   /usr/include/c++/14/exception:92:22: note: declared here
2025-09-08T03:59:28,046      92 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2025-09-08T03:59:28,046         |                      ^~~~~~~~~~~~~~
2025-09-08T03:59:28,766   In file included from ./base/libsbml.h:45,
2025-09-08T03:59:28,766                    from ./base/libsbml_wrap.cpp:3748:
2025-09-08T03:59:28,766   ./base//sbml/ListOf.h: At global scope:
2025-09-08T03:59:28,766   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:28,766      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T03:59:28,766         |                           ^~~~~~~~~~~~~~
2025-09-08T03:59:28,767   In file included from /usr/include/c++/14/string:49,
2025-09-08T03:59:28,767                    from ./base/libsbml_wrap.cpp:2948:
2025-09-08T03:59:28,767   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:59:28,767     117 |     struct unary_function
2025-09-08T03:59:28,767         |            ^~~~~~~~~~~~~~
2025-09-08T03:59:29,548   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T03:59:29,549                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T03:59:29,549                    from ./base/../swig/fbc-package.h:31,
2025-09-08T03:59:29,549                    from ./base/../swig/libsbml-packages.h:4,
2025-09-08T03:59:29,549                    from ./base/libsbml_wrap.cpp:3752:
2025-09-08T03:59:29,549   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:29,549     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T03:59:29,549         |                                          ^~~~~~~~~~~~~~
2025-09-08T03:59:29,549   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:59:29,550     117 |     struct unary_function
2025-09-08T03:59:29,550         |            ^~~~~~~~~~~~~~
2025-09-08T03:59:29,555   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:29,556     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T03:59:29,556         |                                      ^~~~~~~~~~~~~~
2025-09-08T03:59:29,556   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:59:29,556     117 |     struct unary_function
2025-09-08T03:59:29,556         |            ^~~~~~~~~~~~~~
2025-09-08T03:59:29,571   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T03:59:29,572   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:29,572     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T03:59:29,572         |                                            ^~~~~~~~~~~~~~
2025-09-08T03:59:29,572   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T03:59:29,572     117 |     struct unary_function
2025-09-08T03:59:29,572         |            ^~~~~~~~~~~~~~
2025-09-08T03:59:29,594   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T03:59:29,594                    from ./base/../swig/layout-package.h:49,
2025-09-08T03:59:29,595                    from ./base/../swig/libsbml-packages.h:5:
2025-09-08T03:59:29,595   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:59:29,595     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:59:29,595         |                             ^~~~~~~~
2025-09-08T03:59:29,595   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T03:59:29,595     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T03:59:29,595         |                              ^~~~~~~~
2025-09-08T03:59:29,600   In file included from ./base//sbml/packages/layout/sbml/CubicBezier.h:55,
2025-09-08T03:59:29,600                    from ./base/../swig/layout-package.h:50:
2025-09-08T03:59:29,600   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:59:29,601     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T03:59:29,601         |                        ^~~~~~~~
2025-09-08T03:59:29,601   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T03:59:29,601     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T03:59:29,601         |                        ^~~~~~~~
2025-09-08T03:59:29,606   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:59:29,606     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:59:29,606         |                             ^~~~~~~~
2025-09-08T03:59:29,607   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T03:59:29,607                    from ./base/../swig/layout-package.h:54:
2025-09-08T03:59:29,607   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T03:59:29,607     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T03:59:29,607         |                          ^~~~~~~~
2025-09-08T03:59:29,609   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:59:29,610     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:59:29,610         |                             ^~~~~~~~
2025-09-08T03:59:29,610   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T03:59:29,610                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T03:59:29,610   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T03:59:29,610     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T03:59:29,610         |                                   ^~~~~~~~
2025-09-08T03:59:29,615   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:59:29,615     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:59:29,615         |                             ^~~~~~~~
2025-09-08T03:59:29,615   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T03:59:29,615     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T03:59:29,615         |                           ^~~~~~~~
2025-09-08T03:59:29,618   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:59:29,618     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:59:29,618         |                             ^~~~~~~~
2025-09-08T03:59:29,618   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T03:59:29,618   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T03:59:29,618     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T03:59:29,619         |                      ^~~~~~~~
2025-09-08T03:59:29,634   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:59:29,634     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:59:29,634         |                             ^~~~~~~~
2025-09-08T03:59:29,634   In file included from ./base/../swig/layout-package.h:57:
2025-09-08T03:59:29,634   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T03:59:29,634     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T03:59:29,635         |                            ^~~~~~~~
2025-09-08T03:59:29,639   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T03:59:29,639     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T03:59:29,640         |                             ^~~~~~~~
2025-09-08T03:59:29,640   In file included from ./base/../swig/layout-package.h:58:
2025-09-08T03:59:29,640   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T03:59:29,640     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T03:59:29,640         |                          ^~~~~~~~
2025-09-08T03:59:29,767   ./base/libsbml_wrap.cpp:4675:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:29,767    4675 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2025-09-08T03:59:29,768         |                                    ^~~~~~~~~~~~~~~
2025-09-08T03:59:29,768   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T03:59:29,768     131 |     struct binary_function
2025-09-08T03:59:29,768         |            ^~~~~~~~~~~~~~~
2025-09-08T03:59:29,771   ./base/libsbml_wrap.cpp:4700:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:29,772    4700 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2025-09-08T03:59:29,772         |                                                ^~~~~~~~~~~~~~~
2025-09-08T03:59:29,772   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T03:59:29,772     131 |     struct binary_function
2025-09-08T03:59:29,772         |            ^~~~~~~~~~~~~~~
2025-09-08T03:59:29,776   ./base/libsbml_wrap.cpp:4710:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T03:59:29,776    4710 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2025-09-08T03:59:29,776         |                                                ^~~~~~~~~~~~~~~
2025-09-08T03:59:29,777   /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
2025-09-08T03:59:29,777     131 |     struct binary_function
2025-09-08T03:59:29,777         |            ^~~~~~~~~~~~~~~
2025-09-08T04:05:03,147   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:03,148                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:05:03,148                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:05:03,148                    from ./base/sbml/AlgebraicRule.cpp:49:
2025-09-08T04:05:03,148   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:03,148      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:03,148         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:03,148   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:03,149                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:03,149                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:03,149                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:03,149                    from ./base/sbml/AlgebraicRule.cpp:34:
2025-09-08T04:05:03,149   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:03,149     117 |     struct unary_function
2025-09-08T04:05:03,149         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:03,388   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)’:
2025-09-08T04:05:03,388   ./base/sbml/AlgebraicRule.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:03,388     163 |   catch (SBMLConstructorException)
2025-09-08T04:05:03,388         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:03,388   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:03,389   ./base/sbml/AlgebraicRule.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:03,389     179 |   catch (SBMLConstructorException)
2025-09-08T04:05:03,389         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:06,992   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:06,992                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:05:06,992                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:05:06,992                    from ./base/sbml/AssignmentRule.cpp:49:
2025-09-08T04:05:06,992   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:06,992      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:06,992         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:06,993   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:06,993                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:06,994                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:06,994                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:06,994                    from ./base/sbml/AssignmentRule.cpp:34:
2025-09-08T04:05:06,994   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:06,994     117 |     struct unary_function
2025-09-08T04:05:06,994         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:07,226   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)’:
2025-09-08T04:05:07,226   ./base/sbml/AssignmentRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:07,226     154 |   catch (SBMLConstructorException)
2025-09-08T04:05:07,226         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:07,227   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:07,227   ./base/sbml/AssignmentRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:07,227     170 |   catch (SBMLConstructorException)
2025-09-08T04:05:07,227         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:10,922   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:10,922                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:05:10,922                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:05:10,922                    from ./base/sbml/Compartment.cpp:41:
2025-09-08T04:05:10,922   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:10,922      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:10,923         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:10,923   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:10,923                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:10,923                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:10,923                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:10,923                    from ./base/sbml/Compartment.cpp:35:
2025-09-08T04:05:10,923   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:10,923     117 |     struct unary_function
2025-09-08T04:05:10,923         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:11,167   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-08T04:05:11,167   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:05:11,168     146 |   if (&orig == NULL)
2025-09-08T04:05:11,168         |             ^
2025-09-08T04:05:11,168   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2025-09-08T04:05:11,168     143 | Compartment::Compartment(const Compartment& orig) :
2025-09-08T04:05:11,168         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:11,170   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-08T04:05:11,170   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:05:11,170     175 |   if (&rhs == NULL)
2025-09-08T04:05:11,170         |            ^
2025-09-08T04:05:11,170   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2025-09-08T04:05:11,170     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2025-09-08T04:05:11,170         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:11,176   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-08T04:05:11,176   ./base/sbml/Compartment.cpp:496:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:11,176     496 |   if (&(sid) == NULL)
2025-09-08T04:05:11,176         |              ^
2025-09-08T04:05:11,176   ./base/sbml/Compartment.cpp:485:40: note: ‘sid’ declared here
2025-09-08T04:05:11,177     485 | Compartment::setId (const std::string& sid)
2025-09-08T04:05:11,177         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:11,177   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-08T04:05:11,177   ./base/sbml/Compartment.cpp:521:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:05:11,177     521 |   if (&(name) == NULL)
2025-09-08T04:05:11,177         |               ^
2025-09-08T04:05:11,177   ./base/sbml/Compartment.cpp:516:42: note: ‘name’ declared here
2025-09-08T04:05:11,177     516 | Compartment::setName (const std::string& name)
2025-09-08T04:05:11,178         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:11,178   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-08T04:05:11,178   ./base/sbml/Compartment.cpp:551:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:11,178     551 |   if (&(sid) == NULL)
2025-09-08T04:05:11,178         |              ^
2025-09-08T04:05:11,178   ./base/sbml/Compartment.cpp:549:53: note: ‘sid’ declared here
2025-09-08T04:05:11,178     549 | Compartment::setCompartmentType (const std::string& sid)
2025-09-08T04:05:11,178         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:11,180   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-08T04:05:11,180   ./base/sbml/Compartment.cpp:673:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:11,181     673 |   if (&(sid) == NULL)
2025-09-08T04:05:11,181         |              ^
2025-09-08T04:05:11,181   ./base/sbml/Compartment.cpp:671:43: note: ‘sid’ declared here
2025-09-08T04:05:11,181     671 | Compartment::setUnits (const std::string& sid)
2025-09-08T04:05:11,181         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:11,181   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-08T04:05:11,181   ./base/sbml/Compartment.cpp:695:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:11,181     695 |   if (&(sid) == NULL)
2025-09-08T04:05:11,182         |              ^
2025-09-08T04:05:11,182   ./base/sbml/Compartment.cpp:693:45: note: ‘sid’ declared here
2025-09-08T04:05:11,182     693 | Compartment::setOutside (const std::string& sid)
2025-09-08T04:05:11,182         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:11,221   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-08T04:05:11,221   ./base/sbml/Compartment.cpp:1534:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:11,221    1534 |   if (&(sid) == NULL)
2025-09-08T04:05:11,221         |              ^
2025-09-08T04:05:11,221   ./base/sbml/Compartment.cpp:1530:45: note: ‘sid’ declared here
2025-09-08T04:05:11,221    1530 | ListOfCompartments::get (const std::string& sid) const
2025-09-08T04:05:11,221         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:11,224   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-08T04:05:11,225   ./base/sbml/Compartment.cpp:1562:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:11,225    1562 |   if (&(sid) != NULL)
2025-09-08T04:05:11,225         |              ^
2025-09-08T04:05:11,225   ./base/sbml/Compartment.cpp:1557:48: note: ‘sid’ declared here
2025-09-08T04:05:11,225    1557 | ListOfCompartments::remove (const std::string& sid)
2025-09-08T04:05:11,225         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:11,230   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2025-09-08T04:05:11,230   ./base/sbml/Compartment.cpp:1640:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:11,230    1640 |   catch (SBMLConstructorException)
2025-09-08T04:05:11,230         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:11,231   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:11,231   ./base/sbml/Compartment.cpp:1656:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:11,231    1656 |   catch (SBMLConstructorException)
2025-09-08T04:05:11,231         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:11,754   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2025-09-08T04:05:11,754   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:11,754     146 |   if (&orig == NULL)
2025-09-08T04:05:11,754         |   ^~
2025-09-08T04:05:11,754   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2025-09-08T04:05:11,754   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:11,755     175 |   if (&rhs == NULL)
2025-09-08T04:05:11,755         |   ^~
2025-09-08T04:05:11,757   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2025-09-08T04:05:11,757   ./base/sbml/Compartment.cpp:496:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:11,758     496 |   if (&(sid) == NULL)
2025-09-08T04:05:11,758         |   ^~
2025-09-08T04:05:11,758   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2025-09-08T04:05:11,758   ./base/sbml/Compartment.cpp:521:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:11,758     521 |   if (&(name) == NULL)
2025-09-08T04:05:11,758         |   ^~
2025-09-08T04:05:11,758   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2025-09-08T04:05:11,758   ./base/sbml/Compartment.cpp:551:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:11,758     551 |   if (&(sid) == NULL)
2025-09-08T04:05:11,758         |   ^~
2025-09-08T04:05:11,759   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2025-09-08T04:05:11,759   ./base/sbml/Compartment.cpp:673:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:11,759     673 |   if (&(sid) == NULL)
2025-09-08T04:05:11,759         |   ^~
2025-09-08T04:05:11,759   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2025-09-08T04:05:11,759   ./base/sbml/Compartment.cpp:695:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:11,759     695 |   if (&(sid) == NULL)
2025-09-08T04:05:11,759         |   ^~
2025-09-08T04:05:11,764   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2025-09-08T04:05:11,764   ./base/sbml/Compartment.cpp:1534:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:11,764    1534 |   if (&(sid) == NULL)
2025-09-08T04:05:11,764         |   ^~
2025-09-08T04:05:11,772   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2025-09-08T04:05:11,772   ./base/sbml/Compartment.cpp:1562:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:11,772    1562 |   if (&(sid) != NULL)
2025-09-08T04:05:11,772         |   ^~
2025-09-08T04:05:19,503   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:19,504                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:05:19,504                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:05:19,504                    from ./base/sbml/CompartmentType.cpp:40:
2025-09-08T04:05:19,504   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:19,504      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:19,504         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:19,504   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:19,504                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:19,505                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:19,505                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:19,505                    from ./base/sbml/CompartmentType.cpp:33:
2025-09-08T04:05:19,505   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:19,505     117 |     struct unary_function
2025-09-08T04:05:19,505         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:19,748   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-08T04:05:19,748   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:05:19,749      92 |   if (&orig == NULL)
2025-09-08T04:05:19,749         |             ^
2025-09-08T04:05:19,749   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2025-09-08T04:05:19,749      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2025-09-08T04:05:19,749         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:19,750   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-08T04:05:19,750   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:05:19,750     110 |   if (&rhs == NULL)
2025-09-08T04:05:19,750         |            ^
2025-09-08T04:05:19,750   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2025-09-08T04:05:19,750     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2025-09-08T04:05:19,750         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:19,754   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-08T04:05:19,754   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:19,754     207 |   if (&(sid) == NULL)
2025-09-08T04:05:19,754         |              ^
2025-09-08T04:05:19,754   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2025-09-08T04:05:19,755     196 | CompartmentType::setId (const std::string& sid)
2025-09-08T04:05:19,755         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:19,755   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-08T04:05:19,755   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:05:19,755     232 |   if (&(name) == NULL)
2025-09-08T04:05:19,755         |               ^
2025-09-08T04:05:19,755   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2025-09-08T04:05:19,755     227 | CompartmentType::setName (const std::string& name)
2025-09-08T04:05:19,755         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:19,765   ./base/sbml/CompartmentType.cpp: At global scope:
2025-09-08T04:05:19,766   ./base/sbml/CompartmentType.cpp:543:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:19,766     543 | struct IdEqCT : public unary_function<SBase*, bool>
2025-09-08T04:05:19,766         |                        ^~~~~~~~~~~~~~
2025-09-08T04:05:19,766   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:19,766     117 |     struct unary_function
2025-09-08T04:05:19,766         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:19,769   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-08T04:05:19,769   ./base/sbml/CompartmentType.cpp:568:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:19,769     568 |   if (&(sid) == NULL)
2025-09-08T04:05:19,770         |              ^
2025-09-08T04:05:19,770   ./base/sbml/CompartmentType.cpp:564:49: note: ‘sid’ declared here
2025-09-08T04:05:19,770     564 | ListOfCompartmentTypes::get (const std::string& sid) const
2025-09-08T04:05:19,770         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:19,773   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-08T04:05:19,773   ./base/sbml/CompartmentType.cpp:596:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:19,773     596 |   if (&(sid) != NULL)
2025-09-08T04:05:19,773         |              ^
2025-09-08T04:05:19,773   ./base/sbml/CompartmentType.cpp:591:52: note: ‘sid’ declared here
2025-09-08T04:05:19,773     591 | ListOfCompartmentTypes::remove (const std::string& sid)
2025-09-08T04:05:19,773         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:19,778   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2025-09-08T04:05:19,778   ./base/sbml/CompartmentType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:19,778     674 |   catch (SBMLConstructorException)
2025-09-08T04:05:19,778         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:19,779   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:19,779   ./base/sbml/CompartmentType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:19,779     690 |   catch (SBMLConstructorException)
2025-09-08T04:05:19,779         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:20,265   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2025-09-08T04:05:20,265   ./base/sbml/CompartmentType.cpp:568:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:20,265     568 |   if (&(sid) == NULL)
2025-09-08T04:05:20,265         |   ^~
2025-09-08T04:05:20,268   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2025-09-08T04:05:20,268   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:20,268      92 |   if (&orig == NULL)
2025-09-08T04:05:20,269         |   ^~
2025-09-08T04:05:20,269   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2025-09-08T04:05:20,269   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:20,269     110 |   if (&rhs == NULL)
2025-09-08T04:05:20,269         |   ^~
2025-09-08T04:05:20,271   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2025-09-08T04:05:20,271   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:20,271     207 |   if (&(sid) == NULL)
2025-09-08T04:05:20,271         |   ^~
2025-09-08T04:05:20,271   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2025-09-08T04:05:20,271   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:20,271     232 |   if (&(name) == NULL)
2025-09-08T04:05:20,272         |   ^~
2025-09-08T04:05:20,279   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2025-09-08T04:05:20,279   ./base/sbml/CompartmentType.cpp:596:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:20,279     596 |   if (&(sid) != NULL)
2025-09-08T04:05:20,279         |   ^~
2025-09-08T04:05:25,067   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:25,067                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:05:25,067                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:05:25,067                    from ./base/sbml/Constraint.cpp:43:
2025-09-08T04:05:25,067   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:25,067      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:25,067         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:25,068   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:25,068                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:25,068                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:25,068                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:25,068                    from ./base/sbml/Constraint.cpp:33:
2025-09-08T04:05:25,068   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:25,068     117 |     struct unary_function
2025-09-08T04:05:25,068         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:25,317   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-08T04:05:25,317   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:05:25,317     101 |   if (&orig == NULL)
2025-09-08T04:05:25,318         |             ^
2025-09-08T04:05:25,318   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2025-09-08T04:05:25,318      96 | Constraint::Constraint (const Constraint& orig) :
2025-09-08T04:05:25,318         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:25,320   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-08T04:05:25,320   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:05:25,320     122 |   if (&rhs == NULL)
2025-09-08T04:05:25,320         |            ^
2025-09-08T04:05:25,320   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2025-09-08T04:05:25,321     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2025-09-08T04:05:25,321         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:25,345   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2025-09-08T04:05:25,345   ./base/sbml/Constraint.cpp:773:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:25,346     773 |   catch (SBMLConstructorException)
2025-09-08T04:05:25,346         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:25,347   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:25,347   ./base/sbml/Constraint.cpp:789:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:25,347     789 |   catch (SBMLConstructorException)
2025-09-08T04:05:25,347         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:25,798   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2025-09-08T04:05:25,798   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:25,798     101 |   if (&orig == NULL)
2025-09-08T04:05:25,798         |   ^~
2025-09-08T04:05:25,799   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2025-09-08T04:05:25,800   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:25,800     122 |   if (&rhs == NULL)
2025-09-08T04:05:25,800         |   ^~
2025-09-08T04:05:30,090   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:30,091                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:05:30,091                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:05:30,091                    from ./base/sbml/Delay.cpp:45:
2025-09-08T04:05:30,091   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:30,091      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:30,091         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:30,091   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:30,091                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:30,092                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:30,092                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:30,092                    from ./base/sbml/Delay.cpp:33:
2025-09-08T04:05:30,092   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:30,092     117 |     struct unary_function
2025-09-08T04:05:30,092         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:30,321   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-08T04:05:30,321   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:05:30,321     100 |   if (&orig == NULL)
2025-09-08T04:05:30,321         |             ^
2025-09-08T04:05:30,321   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2025-09-08T04:05:30,322      96 | Delay::Delay (const Delay& orig) :
2025-09-08T04:05:30,322         |               ~~~~~~~~~~~~~^~~~
2025-09-08T04:05:30,322   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-08T04:05:30,323   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:05:30,323     122 |   if (&rhs == NULL)
2025-09-08T04:05:30,323         |            ^
2025-09-08T04:05:30,323   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2025-09-08T04:05:30,323     120 | Delay& Delay::operator=(const Delay& rhs)
2025-09-08T04:05:30,323         |                         ~~~~~~~~~~~~~^~~
2025-09-08T04:05:30,353   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2025-09-08T04:05:30,353   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:30,353     648 |   catch (SBMLConstructorException)
2025-09-08T04:05:30,353         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:30,353   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:30,354   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:30,354     664 |   catch (SBMLConstructorException)
2025-09-08T04:05:30,354         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:30,770   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2025-09-08T04:05:30,770   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:30,770     100 |   if (&orig == NULL)
2025-09-08T04:05:30,770         |   ^~
2025-09-08T04:05:30,770   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2025-09-08T04:05:30,770   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:30,770     122 |   if (&rhs == NULL)
2025-09-08T04:05:30,770         |   ^~
2025-09-08T04:05:34,533   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:34,533                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:05:34,533                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:05:34,533                    from ./base/sbml/Event.cpp:44:
2025-09-08T04:05:34,534   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:34,534      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:34,534         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:34,534   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:34,534                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:34,534                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:34,534                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:34,534                    from ./base/sbml/Event.cpp:33:
2025-09-08T04:05:34,534   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:34,535     117 |     struct unary_function
2025-09-08T04:05:34,535         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:34,779   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-08T04:05:34,779   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:05:34,779     134 |   if (&orig == NULL)
2025-09-08T04:05:34,779         |             ^
2025-09-08T04:05:34,780   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2025-09-08T04:05:34,780     127 | Event::Event (const Event& orig) :
2025-09-08T04:05:34,780         |               ~~~~~~~~~~~~~^~~~
2025-09-08T04:05:34,782   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-08T04:05:34,782   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:05:34,782     171 |   if (&rhs == NULL)
2025-09-08T04:05:34,782         |            ^
2025-09-08T04:05:34,782   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2025-09-08T04:05:34,783     169 | Event& Event::operator=(const Event& rhs)
2025-09-08T04:05:34,783         |                         ~~~~~~~~~~~~~^~~
2025-09-08T04:05:34,798   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-08T04:05:34,798   ./base/sbml/Event.cpp:530:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:34,798     530 |   if (&(sid) == NULL)
2025-09-08T04:05:34,798         |              ^
2025-09-08T04:05:34,798   ./base/sbml/Event.cpp:519:34: note: ‘sid’ declared here
2025-09-08T04:05:34,798     519 | Event::setId (const std::string& sid)
2025-09-08T04:05:34,798         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:34,799   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-08T04:05:34,799   ./base/sbml/Event.cpp:556:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:05:34,799     556 |   if (&(name) == NULL)
2025-09-08T04:05:34,799         |               ^
2025-09-08T04:05:34,799   ./base/sbml/Event.cpp:551:36: note: ‘name’ declared here
2025-09-08T04:05:34,799     551 | Event::setName (const std::string& name)
2025-09-08T04:05:34,799         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:34,805   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-08T04:05:34,805   ./base/sbml/Event.cpp:704:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:34,805     704 |   if (&(sid) == NULL)
2025-09-08T04:05:34,805         |              ^
2025-09-08T04:05:34,805   ./base/sbml/Event.cpp:702:41: note: ‘sid’ declared here
2025-09-08T04:05:34,805     702 | Event::setTimeUnits (const std::string& sid)
2025-09-08T04:05:34,805         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:34,812   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-08T04:05:34,812   ./base/sbml/Event.cpp:1079:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T04:05:34,812    1079 |   return (&variable != NULL ) ?
2025-09-08T04:05:34,813         |                     ^
2025-09-08T04:05:34,813   ./base/sbml/Event.cpp:1077:47: note: ‘variable’ declared here
2025-09-08T04:05:34,813    1077 | Event::getEventAssignment (const std::string& variable) const
2025-09-08T04:05:34,813         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:05:34,813   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-08T04:05:34,813   ./base/sbml/Event.cpp:1091:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T04:05:34,813    1091 |   return (&variable != NULL ) ?
2025-09-08T04:05:34,813         |                     ^
2025-09-08T04:05:34,813   ./base/sbml/Event.cpp:1089:47: note: ‘variable’ declared here
2025-09-08T04:05:34,814    1089 | Event::getEventAssignment (const std::string& variable)
2025-09-08T04:05:34,814         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:05:34,814   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-08T04:05:34,814   ./base/sbml/Event.cpp:1124:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2025-09-08T04:05:34,814    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-08T04:05:34,814         |                     ^
2025-09-08T04:05:34,814   ./base/sbml/Event.cpp:1122:50: note: ‘variable’ declared here
2025-09-08T04:05:34,814    1122 | Event::removeEventAssignment (const std::string& variable)
2025-09-08T04:05:34,814         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:05:34,842   ./base/sbml/Event.cpp: At global scope:
2025-09-08T04:05:34,843   ./base/sbml/Event.cpp:1741:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:34,843    1741 | struct IdEqE : public unary_function<SBase*, bool>
2025-09-08T04:05:34,843         |                       ^~~~~~~~~~~~~~
2025-09-08T04:05:34,843   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:34,843     117 |     struct unary_function
2025-09-08T04:05:34,843         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:34,844   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-08T04:05:34,844   ./base/sbml/Event.cpp:1755:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:34,845    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-08T04:05:34,845         |                ^
2025-09-08T04:05:34,845   ./base/sbml/Event.cpp:1753:39: note: ‘sid’ declared here
2025-09-08T04:05:34,845    1753 | ListOfEvents::get (const std::string& sid)
2025-09-08T04:05:34,845         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:34,845   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-08T04:05:34,845   ./base/sbml/Event.cpp:1764:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:34,845    1764 |   if (&sid == NULL) return NULL;
2025-09-08T04:05:34,845         |            ^
2025-09-08T04:05:34,846   ./base/sbml/Event.cpp:1762:39: note: ‘sid’ declared here
2025-09-08T04:05:34,846    1762 | ListOfEvents::get (const std::string& sid) const
2025-09-08T04:05:34,846         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:34,850   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-08T04:05:34,850   ./base/sbml/Event.cpp:1787:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:34,850    1787 |   if (&(sid) != NULL)
2025-09-08T04:05:34,850         |              ^
2025-09-08T04:05:34,850   ./base/sbml/Event.cpp:1782:42: note: ‘sid’ declared here
2025-09-08T04:05:34,850    1782 | ListOfEvents::remove (const std::string& sid)
2025-09-08T04:05:34,850         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:34,855   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2025-09-08T04:05:34,855   ./base/sbml/Event.cpp:1866:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:34,855    1866 |   catch (SBMLConstructorException)
2025-09-08T04:05:34,855         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:34,856   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:34,856   ./base/sbml/Event.cpp:1882:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:34,856    1882 |   catch (SBMLConstructorException)
2025-09-08T04:05:34,856         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:35,366   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2025-09-08T04:05:35,366   ./base/sbml/Event.cpp:1755:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,366    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2025-09-08T04:05:35,366         |                         ^
2025-09-08T04:05:35,374   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2025-09-08T04:05:35,374   ./base/sbml/Event.cpp:1079:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,374    1079 |   return (&variable != NULL ) ?
2025-09-08T04:05:35,375         |                               ^
2025-09-08T04:05:35,375   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2025-09-08T04:05:35,375   ./base/sbml/Event.cpp:1091:31: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,375    1091 |   return (&variable != NULL ) ?
2025-09-08T04:05:35,375         |                               ^
2025-09-08T04:05:35,375   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2025-09-08T04:05:35,375   ./base/sbml/Event.cpp:1124:30: warning: ‘nonnull’ argument ‘variable’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,375    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2025-09-08T04:05:35,375         |                              ^
2025-09-08T04:05:35,385   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2025-09-08T04:05:35,386   ./base/sbml/Event.cpp:1764:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,386    1764 |   if (&sid == NULL) return NULL;
2025-09-08T04:05:35,386         |   ^~
2025-09-08T04:05:35,389   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2025-09-08T04:05:35,389   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,389     171 |   if (&rhs == NULL)
2025-09-08T04:05:35,389         |   ^~
2025-09-08T04:05:35,394   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2025-09-08T04:05:35,394   ./base/sbml/Event.cpp:530:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,394     530 |   if (&(sid) == NULL)
2025-09-08T04:05:35,394         |   ^~
2025-09-08T04:05:35,395   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2025-09-08T04:05:35,395   ./base/sbml/Event.cpp:556:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,395     556 |   if (&(name) == NULL)
2025-09-08T04:05:35,395         |   ^~
2025-09-08T04:05:35,395   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2025-09-08T04:05:35,395   ./base/sbml/Event.cpp:704:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,395     704 |   if (&(sid) == NULL)
2025-09-08T04:05:35,395         |   ^~
2025-09-08T04:05:35,403   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2025-09-08T04:05:35,403   ./base/sbml/Event.cpp:1787:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,403    1787 |   if (&(sid) != NULL)
2025-09-08T04:05:35,403         |   ^~
2025-09-08T04:05:35,406   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2025-09-08T04:05:35,406   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:35,406     134 |   if (&orig == NULL)
2025-09-08T04:05:35,406         |   ^~
2025-09-08T04:05:42,401   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:42,402                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:05:42,402                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:05:42,402                    from ./base/sbml/EventAssignment.cpp:44:
2025-09-08T04:05:42,402   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:42,402      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:42,402         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:42,402   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:42,402                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:42,403                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:42,403                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:42,403                    from ./base/sbml/EventAssignment.cpp:33:
2025-09-08T04:05:42,403   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:42,403     117 |     struct unary_function
2025-09-08T04:05:42,403         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:42,643   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-08T04:05:42,643   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:05:42,643     100 |   if (&orig == NULL)
2025-09-08T04:05:42,644         |             ^
2025-09-08T04:05:42,644   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2025-09-08T04:05:42,644      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2025-09-08T04:05:42,644         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:42,645   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-08T04:05:42,645   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:05:42,645     122 |   if (&rhs == NULL)
2025-09-08T04:05:42,645         |            ^
2025-09-08T04:05:42,645   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2025-09-08T04:05:42,645     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2025-09-08T04:05:42,646         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:42,648   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-08T04:05:42,648   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:42,648     219 |   if (&(sid) == NULL)
2025-09-08T04:05:42,648         |              ^
2025-09-08T04:05:42,648   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2025-09-08T04:05:42,648     217 | EventAssignment::setVariable (const std::string& sid)
2025-09-08T04:05:42,649         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:42,673   ./base/sbml/EventAssignment.cpp: At global scope:
2025-09-08T04:05:42,673   ./base/sbml/EventAssignment.cpp:846:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:42,674     846 | struct IdEqEA : public unary_function<SBase*, bool>
2025-09-08T04:05:42,674         |                        ^~~~~~~~~~~~~~
2025-09-08T04:05:42,674   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:42,674     117 |     struct unary_function
2025-09-08T04:05:42,674         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:42,677   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-08T04:05:42,677   ./base/sbml/EventAssignment.cpp:871:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:42,677     871 |   if (&(sid) == NULL)
2025-09-08T04:05:42,677         |              ^
2025-09-08T04:05:42,677   ./base/sbml/EventAssignment.cpp:867:49: note: ‘sid’ declared here
2025-09-08T04:05:42,677     867 | ListOfEventAssignments::get (const std::string& sid) const
2025-09-08T04:05:42,677         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:42,680   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-08T04:05:42,680   ./base/sbml/EventAssignment.cpp:899:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:42,680     899 |   if (&(sid) != NULL)
2025-09-08T04:05:42,680         |              ^
2025-09-08T04:05:42,681   ./base/sbml/EventAssignment.cpp:894:52: note: ‘sid’ declared here
2025-09-08T04:05:42,681     894 | ListOfEventAssignments::remove (const std::string& sid)
2025-09-08T04:05:42,681         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:42,686   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2025-09-08T04:05:42,686   ./base/sbml/EventAssignment.cpp:992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:42,686     992 |   catch (SBMLConstructorException)
2025-09-08T04:05:42,686         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:42,687   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:42,687   ./base/sbml/EventAssignment.cpp:1008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:42,687    1008 |   catch (SBMLConstructorException)
2025-09-08T04:05:42,687         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:43,184   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2025-09-08T04:05:43,185   ./base/sbml/EventAssignment.cpp:871:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:43,185     871 |   if (&(sid) == NULL)
2025-09-08T04:05:43,185         |   ^~
2025-09-08T04:05:43,187   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2025-09-08T04:05:43,188   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:43,188     100 |   if (&orig == NULL)
2025-09-08T04:05:43,188         |   ^~
2025-09-08T04:05:43,188   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2025-09-08T04:05:43,188   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:43,188     122 |   if (&rhs == NULL)
2025-09-08T04:05:43,188         |   ^~
2025-09-08T04:05:43,190   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2025-09-08T04:05:43,190   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:43,190     219 |   if (&(sid) == NULL)
2025-09-08T04:05:43,190         |   ^~
2025-09-08T04:05:43,200   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2025-09-08T04:05:43,201   ./base/sbml/EventAssignment.cpp:899:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:43,201     899 |   if (&(sid) != NULL)
2025-09-08T04:05:43,201         |   ^~
2025-09-08T04:05:50,838   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:50,838                    from ./base/sbml/FunctionDefinition.cpp:47:
2025-09-08T04:05:50,838   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:50,838      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:50,838         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:50,839   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:50,839                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:50,839                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:50,839                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:50,839                    from ./base/sbml/FunctionDefinition.cpp:35:
2025-09-08T04:05:50,839   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:50,839     117 |     struct unary_function
2025-09-08T04:05:50,839         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:51,131   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-08T04:05:51,131   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:05:51,131     102 |   if (&orig == NULL)
2025-09-08T04:05:51,131         |             ^
2025-09-08T04:05:51,131   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2025-09-08T04:05:51,132      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2025-09-08T04:05:51,132         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:51,133   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-08T04:05:51,133   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:05:51,133     125 |   if (&rhs == NULL)
2025-09-08T04:05:51,133         |            ^
2025-09-08T04:05:51,133   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2025-09-08T04:05:51,133     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2025-09-08T04:05:51,133         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:51,136   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-08T04:05:51,136   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:51,137     253 |   if (&(sid) == NULL)
2025-09-08T04:05:51,137         |              ^
2025-09-08T04:05:51,137   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2025-09-08T04:05:51,137     242 | FunctionDefinition::setId (const std::string& sid)
2025-09-08T04:05:51,137         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:51,137   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-08T04:05:51,137   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:05:51,137     278 |   if (&(name) == NULL)
2025-09-08T04:05:51,137         |               ^
2025-09-08T04:05:51,138   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2025-09-08T04:05:51,138     273 | FunctionDefinition::setName (const std::string& name)
2025-09-08T04:05:51,138         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:51,161   ./base/sbml/FunctionDefinition.cpp: At global scope:
2025-09-08T04:05:51,162   ./base/sbml/FunctionDefinition.cpp:996:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:51,162     996 | struct IdEqFD : public unary_function<SBase*, bool>
2025-09-08T04:05:51,162         |                        ^~~~~~~~~~~~~~
2025-09-08T04:05:51,162   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:51,162     117 |     struct unary_function
2025-09-08T04:05:51,162         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:51,165   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-08T04:05:51,165   ./base/sbml/FunctionDefinition.cpp:1021:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:51,165    1021 |   if (&(sid) == NULL)
2025-09-08T04:05:51,165         |              ^
2025-09-08T04:05:51,165   ./base/sbml/FunctionDefinition.cpp:1017:52: note: ‘sid’ declared here
2025-09-08T04:05:51,165    1017 | ListOfFunctionDefinitions::get (const std::string& sid) const
2025-09-08T04:05:51,166         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:51,168   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-08T04:05:51,169   ./base/sbml/FunctionDefinition.cpp:1049:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:51,169    1049 |   if (&(sid) != NULL)
2025-09-08T04:05:51,169         |              ^
2025-09-08T04:05:51,169   ./base/sbml/FunctionDefinition.cpp:1044:55: note: ‘sid’ declared here
2025-09-08T04:05:51,169    1044 | ListOfFunctionDefinitions::remove (const std::string& sid)
2025-09-08T04:05:51,169         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:51,174   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2025-09-08T04:05:51,174   ./base/sbml/FunctionDefinition.cpp:1126:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:51,174    1126 |   catch (SBMLConstructorException)
2025-09-08T04:05:51,174         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:51,174   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:51,174   ./base/sbml/FunctionDefinition.cpp:1142:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:51,175    1142 |   catch (SBMLConstructorException)
2025-09-08T04:05:51,175         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:51,677   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2025-09-08T04:05:51,677   ./base/sbml/FunctionDefinition.cpp:1021:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:51,677    1021 |   if (&(sid) == NULL)
2025-09-08T04:05:51,678         |   ^~
2025-09-08T04:05:51,680   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2025-09-08T04:05:51,680   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:51,681     102 |   if (&orig == NULL)
2025-09-08T04:05:51,681         |   ^~
2025-09-08T04:05:51,681   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2025-09-08T04:05:51,681   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:51,681     125 |   if (&rhs == NULL)
2025-09-08T04:05:51,681         |   ^~
2025-09-08T04:05:51,683   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2025-09-08T04:05:51,683   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:51,683     253 |   if (&(sid) == NULL)
2025-09-08T04:05:51,684         |   ^~
2025-09-08T04:05:51,684   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2025-09-08T04:05:51,684   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:51,684     278 |   if (&(name) == NULL)
2025-09-08T04:05:51,684         |   ^~
2025-09-08T04:05:51,692   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2025-09-08T04:05:51,693   ./base/sbml/FunctionDefinition.cpp:1049:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:51,693    1049 |   if (&(sid) != NULL)
2025-09-08T04:05:51,693         |   ^~
2025-09-08T04:05:57,178   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:05:57,178                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:05:57,178                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:05:57,179                    from ./base/sbml/InitialAssignment.cpp:43:
2025-09-08T04:05:57,179   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:57,179      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:05:57,179         |                           ^~~~~~~~~~~~~~
2025-09-08T04:05:57,179   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:05:57,179                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:05:57,179                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:05:57,179                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:05:57,179                    from ./base/sbml/InitialAssignment.cpp:33:
2025-09-08T04:05:57,180   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:57,180     117 |     struct unary_function
2025-09-08T04:05:57,180         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:57,422   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-08T04:05:57,423   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:05:57,423      97 |   if (&orig == NULL)
2025-09-08T04:05:57,423         |             ^
2025-09-08T04:05:57,423   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2025-09-08T04:05:57,423      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2025-09-08T04:05:57,423         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:05:57,424   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-08T04:05:57,424   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:05:57,424     119 |   if (&rhs == NULL)
2025-09-08T04:05:57,424         |            ^
2025-09-08T04:05:57,425   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2025-09-08T04:05:57,425     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2025-09-08T04:05:57,425         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:57,427   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-08T04:05:57,427   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:57,427     232 |   if (&(sid) == NULL)
2025-09-08T04:05:57,428         |              ^
2025-09-08T04:05:57,428   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2025-09-08T04:05:57,428     230 | InitialAssignment::setSymbol (const std::string& sid)
2025-09-08T04:05:57,428         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:57,452   ./base/sbml/InitialAssignment.cpp: At global scope:
2025-09-08T04:05:57,452   ./base/sbml/InitialAssignment.cpp:845:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:05:57,452     845 | struct IdEqIA : public unary_function<SBase*, bool>
2025-09-08T04:05:57,452         |                        ^~~~~~~~~~~~~~
2025-09-08T04:05:57,453   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:05:57,453     117 |     struct unary_function
2025-09-08T04:05:57,453         |            ^~~~~~~~~~~~~~
2025-09-08T04:05:57,455   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-08T04:05:57,456   ./base/sbml/InitialAssignment.cpp:870:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:57,456     870 |   if (&(sid) == NULL)
2025-09-08T04:05:57,456         |              ^
2025-09-08T04:05:57,456   ./base/sbml/InitialAssignment.cpp:866:51: note: ‘sid’ declared here
2025-09-08T04:05:57,456     866 | ListOfInitialAssignments::get (const std::string& sid) const
2025-09-08T04:05:57,456         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:57,459   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-08T04:05:57,459   ./base/sbml/InitialAssignment.cpp:898:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:05:57,459     898 |   if (&(sid) != NULL)
2025-09-08T04:05:57,459         |              ^
2025-09-08T04:05:57,459   ./base/sbml/InitialAssignment.cpp:893:54: note: ‘sid’ declared here
2025-09-08T04:05:57,460     893 | ListOfInitialAssignments::remove (const std::string& sid)
2025-09-08T04:05:57,460         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:05:57,465   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2025-09-08T04:05:57,465   ./base/sbml/InitialAssignment.cpp:991:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:57,465     991 |   catch (SBMLConstructorException)
2025-09-08T04:05:57,465         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:57,466   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:05:57,466   ./base/sbml/InitialAssignment.cpp:1007:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:05:57,466    1007 |   catch (SBMLConstructorException)
2025-09-08T04:05:57,466         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:05:57,962   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2025-09-08T04:05:57,962   ./base/sbml/InitialAssignment.cpp:870:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:57,963     870 |   if (&(sid) == NULL)
2025-09-08T04:05:57,963         |   ^~
2025-09-08T04:05:57,965   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2025-09-08T04:05:57,965   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:57,966      97 |   if (&orig == NULL)
2025-09-08T04:05:57,966         |   ^~
2025-09-08T04:05:57,966   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2025-09-08T04:05:57,966   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:57,966     119 |   if (&rhs == NULL)
2025-09-08T04:05:57,966         |   ^~
2025-09-08T04:05:57,969   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2025-09-08T04:05:57,969   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:57,969     232 |   if (&(sid) == NULL)
2025-09-08T04:05:57,969         |   ^~
2025-09-08T04:05:57,978   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2025-09-08T04:05:57,978   ./base/sbml/InitialAssignment.cpp:898:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:05:57,978     898 |   if (&(sid) != NULL)
2025-09-08T04:05:57,979         |   ^~
2025-09-08T04:06:03,431   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:06:03,431                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:06:03,431                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:06:03,432                    from ./base/sbml/KineticLaw.cpp:45:
2025-09-08T04:06:03,432   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:03,432      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:06:03,432         |                           ^~~~~~~~~~~~~~
2025-09-08T04:06:03,432   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:06:03,432                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:06:03,432                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:06:03,432                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:06:03,432                    from ./base/sbml/KineticLaw.cpp:33:
2025-09-08T04:06:03,433   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:03,433     117 |     struct unary_function
2025-09-08T04:06:03,433         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:03,678   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-08T04:06:03,678   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:06:03,679     117 |   if (&orig == NULL)
2025-09-08T04:06:03,679         |             ^
2025-09-08T04:06:03,679   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2025-09-08T04:06:03,679     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2025-09-08T04:06:03,679         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:06:03,681   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-08T04:06:03,681   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:06:03,681     143 |   if (&rhs == NULL)
2025-09-08T04:06:03,681         |            ^
2025-09-08T04:06:03,681   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2025-09-08T04:06:03,681     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2025-09-08T04:06:03,681         |                                   ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:03,691   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-08T04:06:03,692   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-08T04:06:03,692     363 |   if (&(formula) == NULL)
2025-09-08T04:06:03,692         |                  ^
2025-09-08T04:06:03,692   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2025-09-08T04:06:03,692     361 | KineticLaw::setFormula (const std::string& formula)
2025-09-08T04:06:03,692         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:06:03,695   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-08T04:06:03,695   ./base/sbml/KineticLaw.cpp:437:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:03,695     437 |   if (&(sid) == NULL)
2025-09-08T04:06:03,695         |              ^
2025-09-08T04:06:03,695   ./base/sbml/KineticLaw.cpp:434:46: note: ‘sid’ declared here
2025-09-08T04:06:03,695     434 | KineticLaw::setTimeUnits (const std::string& sid)
2025-09-08T04:06:03,695         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:03,696   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-08T04:06:03,696   ./base/sbml/KineticLaw.cpp:465:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:03,696     465 |   if (&(sid) == NULL)
2025-09-08T04:06:03,696         |              ^
2025-09-08T04:06:03,696   ./base/sbml/KineticLaw.cpp:462:51: note: ‘sid’ declared here
2025-09-08T04:06:03,696     462 | KineticLaw::setSubstanceUnits (const std::string& sid)
2025-09-08T04:06:03,696         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:03,710   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-08T04:06:03,710   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:03,710    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-08T04:06:03,710         |                ^
2025-09-08T04:06:03,710   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2025-09-08T04:06:03,711    1032 | KineticLaw::removeParameter (const std::string& sid)
2025-09-08T04:06:03,711         |                              ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:03,711   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-08T04:06:03,711   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:03,711    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-08T04:06:03,711         |                ^
2025-09-08T04:06:03,711   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2025-09-08T04:06:03,711    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2025-09-08T04:06:03,711         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:03,736   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2025-09-08T04:06:03,736   ./base/sbml/KineticLaw.cpp:1612:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:03,737    1612 |   catch (SBMLConstructorException)
2025-09-08T04:06:03,737         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:03,737   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:06:03,737   ./base/sbml/KineticLaw.cpp:1628:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:03,737    1628 |   catch (SBMLConstructorException)
2025-09-08T04:06:03,737         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:04,192   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2025-09-08T04:06:04,193   ./base/sbml/KineticLaw.cpp:1034:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:04,193    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2025-09-08T04:06:04,193         |                         ^
2025-09-08T04:06:04,193   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2025-09-08T04:06:04,193   ./base/sbml/KineticLaw.cpp:1045:25: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:04,193    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2025-09-08T04:06:04,193         |                         ^
2025-09-08T04:06:04,197   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2025-09-08T04:06:04,197   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:04,197     363 |   if (&(formula) == NULL)
2025-09-08T04:06:04,197         |   ^~
2025-09-08T04:06:04,202   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2025-09-08T04:06:04,202   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:04,202     143 |   if (&rhs == NULL)
2025-09-08T04:06:04,202         |   ^~
2025-09-08T04:06:04,205   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2025-09-08T04:06:04,206   ./base/sbml/KineticLaw.cpp:437:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:04,206     437 |   if (&(sid) == NULL)
2025-09-08T04:06:04,206         |   ^~
2025-09-08T04:06:04,206   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2025-09-08T04:06:04,206   ./base/sbml/KineticLaw.cpp:465:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:04,206     465 |   if (&(sid) == NULL)
2025-09-08T04:06:04,206         |   ^~
2025-09-08T04:06:04,213   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2025-09-08T04:06:04,213   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:04,213     117 |   if (&orig == NULL)
2025-09-08T04:06:04,213         |   ^~
2025-09-08T04:06:09,914   In file included from ./base/sbml/ListOf.cpp:37:
2025-09-08T04:06:09,915   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:09,915      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:06:09,915         |                           ^~~~~~~~~~~~~~
2025-09-08T04:06:09,915   In file included from /usr/include/c++/14/functional:49,
2025-09-08T04:06:09,915                    from ./base/sbml/ListOf.cpp:34:
2025-09-08T04:06:09,915   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:09,915     117 |     struct unary_function
2025-09-08T04:06:09,915         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:10,088   ./base/sbml/ListOf.cpp:76:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:10,088      76 | struct Delete : public unary_function<SBase*, void>
2025-09-08T04:06:10,088         |                        ^~~~~~~~~~~~~~
2025-09-08T04:06:10,089   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:10,089     117 |     struct unary_function
2025-09-08T04:06:10,089         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:10,090   ./base/sbml/ListOf.cpp:94:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:10,091      94 | struct Clone : public unary_function<SBase*, SBase*>
2025-09-08T04:06:10,091         |                       ^~~~~~~~~~~~~~
2025-09-08T04:06:10,091   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:10,091     117 |     struct unary_function
2025-09-08T04:06:10,091         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:10,109   ./base/sbml/ListOf.cpp:458:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:10,109     458 | struct SetSBMLDocument : public unary_function<SBase*, void>
2025-09-08T04:06:10,109         |                                 ^~~~~~~~~~~~~~
2025-09-08T04:06:10,109   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:10,109     117 |     struct unary_function
2025-09-08T04:06:10,109         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:10,109   ./base/sbml/ListOf.cpp:470:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:10,109     470 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2025-09-08T04:06:10,110         |                                     ^~~~~~~~~~~~~~
2025-09-08T04:06:10,110   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:10,110     117 |     struct unary_function
2025-09-08T04:06:10,110         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:10,112   ./base/sbml/ListOf.cpp:542:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:10,112     542 | struct Write : public unary_function<SBase*, void>
2025-09-08T04:06:10,112         |                       ^~~~~~~~~~~~~~
2025-09-08T04:06:10,113   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:10,113     117 |     struct unary_function
2025-09-08T04:06:10,113         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:14,802   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:06:14,802                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:06:14,802                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:06:14,802                    from ./base/sbml/LocalParameter.cpp:42:
2025-09-08T04:06:14,802   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:14,803      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:06:14,803         |                           ^~~~~~~~~~~~~~
2025-09-08T04:06:14,803   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:06:14,803                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:06:14,803                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:06:14,803                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:06:14,803                    from ./base/sbml/LocalParameter.cpp:35:
2025-09-08T04:06:14,803   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:14,803     117 |     struct unary_function
2025-09-08T04:06:14,804         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:15,044   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-08T04:06:15,044   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:06:15,044     103 |   if (&orig == NULL)
2025-09-08T04:06:15,044         |             ^
2025-09-08T04:06:15,044   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2025-09-08T04:06:15,045     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2025-09-08T04:06:15,045         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:06:15,045   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-08T04:06:15,045   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:06:15,045     116 |   if (&orig == NULL)
2025-09-08T04:06:15,045         |             ^
2025-09-08T04:06:15,046   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2025-09-08T04:06:15,046     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2025-09-08T04:06:15,046         |                                ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:06:15,046   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-08T04:06:15,046   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:06:15,046     126 |   if (&rhs == NULL)
2025-09-08T04:06:15,047         |            ^
2025-09-08T04:06:15,047   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2025-09-08T04:06:15,047     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2025-09-08T04:06:15,047         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:15,054   ./base/sbml/LocalParameter.cpp: At global scope:
2025-09-08T04:06:15,054   ./base/sbml/LocalParameter.cpp:386:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:15,055     386 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-08T04:06:15,055         |                       ^~~~~~~~~~~~~~
2025-09-08T04:06:15,055   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:15,055     117 |     struct unary_function
2025-09-08T04:06:15,055         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:15,058   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-08T04:06:15,058   ./base/sbml/LocalParameter.cpp:411:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:15,058     411 |   if (&(sid) == NULL)
2025-09-08T04:06:15,058         |              ^
2025-09-08T04:06:15,058   ./base/sbml/LocalParameter.cpp:407:48: note: ‘sid’ declared here
2025-09-08T04:06:15,059     407 | ListOfLocalParameters::get (const std::string& sid) const
2025-09-08T04:06:15,059         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:15,062   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-08T04:06:15,062   ./base/sbml/LocalParameter.cpp:453:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:15,063     453 |   if (&(sid) != NULL)
2025-09-08T04:06:15,063         |              ^
2025-09-08T04:06:15,063   ./base/sbml/LocalParameter.cpp:448:51: note: ‘sid’ declared here
2025-09-08T04:06:15,063     448 | ListOfLocalParameters::remove (const std::string& sid)
2025-09-08T04:06:15,063         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:15,068   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2025-09-08T04:06:15,068   ./base/sbml/LocalParameter.cpp:533:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:15,068     533 |   catch (SBMLConstructorException)
2025-09-08T04:06:15,068         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:15,068   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:06:15,069   ./base/sbml/LocalParameter.cpp:549:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:15,069     549 |   catch (SBMLConstructorException)
2025-09-08T04:06:15,069         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:15,549   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2025-09-08T04:06:15,549   ./base/sbml/LocalParameter.cpp:411:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:15,549     411 |   if (&(sid) == NULL)
2025-09-08T04:06:15,549         |   ^~
2025-09-08T04:06:15,552   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2025-09-08T04:06:15,552   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:15,552     103 |   if (&orig == NULL)
2025-09-08T04:06:15,552         |   ^~
2025-09-08T04:06:15,552   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2025-09-08T04:06:15,552   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:15,552     116 |   if (&orig == NULL)
2025-09-08T04:06:15,553         |   ^~
2025-09-08T04:06:15,553   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2025-09-08T04:06:15,553   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:15,553     126 |   if (&rhs == NULL)
2025-09-08T04:06:15,553         |   ^~
2025-09-08T04:06:15,560   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2025-09-08T04:06:15,560   ./base/sbml/LocalParameter.cpp:453:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:15,560     453 |   if (&(sid) != NULL)
2025-09-08T04:06:15,560         |   ^~
2025-09-08T04:06:19,767   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:06:19,768                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:06:19,768                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:06:19,768                    from ./base/sbml/Model.cpp:41:
2025-09-08T04:06:19,768   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:19,768      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:06:19,768         |                           ^~~~~~~~~~~~~~
2025-09-08T04:06:19,769   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:06:19,769                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:06:19,769                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:06:19,769                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:06:19,769                    from ./base/sbml/Model.cpp:33:
2025-09-08T04:06:19,770   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:19,770     117 |     struct unary_function
2025-09-08T04:06:19,770         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:20,065   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-08T04:06:20,065   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:06:20,065     175 |   if (&orig == NULL)
2025-09-08T04:06:20,066         |             ^
2025-09-08T04:06:20,066   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2025-09-08T04:06:20,066     160 | Model::Model(const Model& orig) :
2025-09-08T04:06:20,066         |              ~~~~~~~~~~~~~^~~~
2025-09-08T04:06:20,070   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-08T04:06:20,070   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:06:20,070     216 |   if (&rhs == NULL)
2025-09-08T04:06:20,070         |            ^
2025-09-08T04:06:20,071   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2025-09-08T04:06:20,071     214 | Model& Model::operator=(const Model& rhs)
2025-09-08T04:06:20,071         |                         ~~~~~~~~~~~~~^~~
2025-09-08T04:06:20,115   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-08T04:06:20,115   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:20,115     718 |   if (&(sid) == NULL)
2025-09-08T04:06:20,115         |              ^
2025-09-08T04:06:20,115   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2025-09-08T04:06:20,116     707 | Model::setId (const std::string& sid)
2025-09-08T04:06:20,116         |               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:20,117   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-08T04:06:20,117   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:06:20,117     743 |   if (&(name) == NULL)
2025-09-08T04:06:20,117         |               ^
2025-09-08T04:06:20,117   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2025-09-08T04:06:20,117     738 | Model::setName (const std::string& name)
2025-09-08T04:06:20,118         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:06:20,119   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-08T04:06:20,119   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T04:06:20,119     773 |   if (&(units) == NULL)
2025-09-08T04:06:20,119         |                ^
2025-09-08T04:06:20,119   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2025-09-08T04:06:20,119     771 | Model::setSubstanceUnits (const std::string& units)
2025-09-08T04:06:20,120         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:06:20,121   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-08T04:06:20,121   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T04:06:20,121     799 |   if (&(units) == NULL)
2025-09-08T04:06:20,121         |                ^
2025-09-08T04:06:20,121   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2025-09-08T04:06:20,121     797 | Model::setTimeUnits (const std::string& units)
2025-09-08T04:06:20,121         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:06:20,123   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-08T04:06:20,123   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T04:06:20,123     825 |   if (&(units) == NULL)
2025-09-08T04:06:20,123         |                ^
2025-09-08T04:06:20,123   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2025-09-08T04:06:20,123     823 | Model::setVolumeUnits (const std::string& units)
2025-09-08T04:06:20,123         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:06:20,125   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-08T04:06:20,125   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T04:06:20,125     851 |   if (&(units) == NULL)
2025-09-08T04:06:20,125         |                ^
2025-09-08T04:06:20,125   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2025-09-08T04:06:20,125     849 | Model::setAreaUnits (const std::string& units)
2025-09-08T04:06:20,125         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:06:20,126   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-08T04:06:20,127   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T04:06:20,127     877 |   if (&(units) == NULL)
2025-09-08T04:06:20,127         |                ^
2025-09-08T04:06:20,127   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2025-09-08T04:06:20,127     875 | Model::setLengthUnits (const std::string& units)
2025-09-08T04:06:20,127         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:06:20,128   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-08T04:06:20,129   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T04:06:20,129     903 |   if (&(units) == NULL)
2025-09-08T04:06:20,129         |                ^
2025-09-08T04:06:20,129   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2025-09-08T04:06:20,129     901 | Model::setExtentUnits (const std::string& units)
2025-09-08T04:06:20,129         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:06:20,130   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-08T04:06:20,131   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-08T04:06:20,131     929 |   if (&(id) == NULL)
2025-09-08T04:06:20,131         |             ^
2025-09-08T04:06:20,131   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2025-09-08T04:06:20,131     927 | Model::setConversionFactor (const std::string& id)
2025-09-08T04:06:20,131         |                             ~~~~~~~~~~~~~~~~~~~^~
2025-09-08T04:06:20,313   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2025-09-08T04:06:20,313   ./base/sbml/Model.cpp:6185:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:20,313    6185 |   catch (SBMLConstructorException)
2025-09-08T04:06:20,313         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:20,314   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:06:20,314   ./base/sbml/Model.cpp:6201:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:20,315    6201 |   catch (SBMLConstructorException)
2025-09-08T04:06:20,315         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:21,007   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2025-09-08T04:06:21,007   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,007     216 |   if (&rhs == NULL)
2025-09-08T04:06:21,008         |   ^~
2025-09-08T04:06:21,024   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2025-09-08T04:06:21,024   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,024     718 |   if (&(sid) == NULL)
2025-09-08T04:06:21,024         |   ^~
2025-09-08T04:06:21,025   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2025-09-08T04:06:21,025   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,025     743 |   if (&(name) == NULL)
2025-09-08T04:06:21,025         |   ^~
2025-09-08T04:06:21,026   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2025-09-08T04:06:21,026   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,026     773 |   if (&(units) == NULL)
2025-09-08T04:06:21,026         |   ^~
2025-09-08T04:06:21,027   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2025-09-08T04:06:21,027   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,027     799 |   if (&(units) == NULL)
2025-09-08T04:06:21,027         |   ^~
2025-09-08T04:06:21,028   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2025-09-08T04:06:21,028   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,028     825 |   if (&(units) == NULL)
2025-09-08T04:06:21,028         |   ^~
2025-09-08T04:06:21,029   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2025-09-08T04:06:21,029   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,029     851 |   if (&(units) == NULL)
2025-09-08T04:06:21,029         |   ^~
2025-09-08T04:06:21,030   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2025-09-08T04:06:21,030   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,030     877 |   if (&(units) == NULL)
2025-09-08T04:06:21,030         |   ^~
2025-09-08T04:06:21,031   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2025-09-08T04:06:21,031   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,031     903 |   if (&(units) == NULL)
2025-09-08T04:06:21,031         |   ^~
2025-09-08T04:06:21,032   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2025-09-08T04:06:21,032   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,032     929 |   if (&(id) == NULL)
2025-09-08T04:06:21,032         |   ^~
2025-09-08T04:06:21,056   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2025-09-08T04:06:21,056   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:21,056     175 |   if (&orig == NULL)
2025-09-08T04:06:21,056         |   ^~
2025-09-08T04:06:35,604   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:06:35,605                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:06:35,605                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:06:35,605                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2025-09-08T04:06:35,605   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:35,605      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:06:35,605         |                           ^~~~~~~~~~~~~~
2025-09-08T04:06:35,605   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:06:35,605                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:06:35,606                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:06:35,606                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:06:35,606                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2025-09-08T04:06:35,606   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:35,606     117 |     struct unary_function
2025-09-08T04:06:35,606         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:35,872   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)’:
2025-09-08T04:06:35,873   ./base/sbml/ModifierSpeciesReference.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:35,873     163 |   catch (SBMLConstructorException)
2025-09-08T04:06:35,873         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:35,873   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:06:35,873   ./base/sbml/ModifierSpeciesReference.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:35,873     179 |   catch (SBMLConstructorException)
2025-09-08T04:06:35,874         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:39,707   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:06:39,707                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:06:39,707                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:06:39,707                    from ./base/sbml/Parameter.cpp:42:
2025-09-08T04:06:39,708   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:39,708      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:06:39,708         |                           ^~~~~~~~~~~~~~
2025-09-08T04:06:39,708   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:06:39,708                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:06:39,708                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:06:39,708                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:06:39,708                    from ./base/sbml/Parameter.cpp:35:
2025-09-08T04:06:39,708   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:39,708     117 |     struct unary_function
2025-09-08T04:06:39,709         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:39,955   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-08T04:06:39,955   ./base/sbml/Parameter.cpp:155:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:06:39,955     155 |   if (&orig == NULL)
2025-09-08T04:06:39,955         |             ^
2025-09-08T04:06:39,955   ./base/sbml/Parameter.cpp:152:39: note: ‘orig’ declared here
2025-09-08T04:06:39,955     152 | Parameter::Parameter(const Parameter& orig) :
2025-09-08T04:06:39,956         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:06:39,957   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-08T04:06:39,957   ./base/sbml/Parameter.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:06:39,957     179 |   if (&rhs == NULL)
2025-09-08T04:06:39,957         |            ^
2025-09-08T04:06:39,957   ./base/sbml/Parameter.cpp:177:50: note: ‘rhs’ declared here
2025-09-08T04:06:39,957     177 | Parameter& Parameter::operator=(const Parameter& rhs)
2025-09-08T04:06:39,957         |                                 ~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:39,961   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-08T04:06:39,961   ./base/sbml/Parameter.cpp:366:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:39,961     366 |   if (&(sid) == NULL)
2025-09-08T04:06:39,961         |              ^
2025-09-08T04:06:39,961   ./base/sbml/Parameter.cpp:355:38: note: ‘sid’ declared here
2025-09-08T04:06:39,961     355 | Parameter::setId (const std::string& sid)
2025-09-08T04:06:39,962         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:39,962   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-08T04:06:39,962   ./base/sbml/Parameter.cpp:391:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:06:39,962     391 |   if (&(name) == NULL)
2025-09-08T04:06:39,962         |               ^
2025-09-08T04:06:39,962   ./base/sbml/Parameter.cpp:386:40: note: ‘name’ declared here
2025-09-08T04:06:39,962     386 | Parameter::setName (const std::string& name)
2025-09-08T04:06:39,962         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:06:39,963   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-08T04:06:39,963   ./base/sbml/Parameter.cpp:433:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2025-09-08T04:06:39,963     433 |   if (&(units) == NULL)
2025-09-08T04:06:39,963         |                ^
2025-09-08T04:06:39,963   ./base/sbml/Parameter.cpp:431:41: note: ‘units’ declared here
2025-09-08T04:06:39,964     431 | Parameter::setUnits (const std::string& units)
2025-09-08T04:06:39,964         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:06:40,016   ./base/sbml/Parameter.cpp: At global scope:
2025-09-08T04:06:40,016   ./base/sbml/Parameter.cpp:1525:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:40,016    1525 | struct IdEqP : public unary_function<SBase*, bool>
2025-09-08T04:06:40,016         |                       ^~~~~~~~~~~~~~
2025-09-08T04:06:40,016   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:40,016     117 |     struct unary_function
2025-09-08T04:06:40,016         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:40,019   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-08T04:06:40,019   ./base/sbml/Parameter.cpp:1548:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:40,019    1548 |   if (&(sid) == NULL)
2025-09-08T04:06:40,019         |              ^
2025-09-08T04:06:40,020   ./base/sbml/Parameter.cpp:1544:43: note: ‘sid’ declared here
2025-09-08T04:06:40,020    1544 | ListOfParameters::get (const std::string& sid) const
2025-09-08T04:06:40,020         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:40,022   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-08T04:06:40,023   ./base/sbml/Parameter.cpp:1575:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:40,023    1575 |   if (&(sid) != NULL)
2025-09-08T04:06:40,023         |              ^
2025-09-08T04:06:40,023   ./base/sbml/Parameter.cpp:1570:46: note: ‘sid’ declared here
2025-09-08T04:06:40,023    1570 | ListOfParameters::remove (const std::string& sid)
2025-09-08T04:06:40,023         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:40,028   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2025-09-08T04:06:40,028   ./base/sbml/Parameter.cpp:1655:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:40,028    1655 |   catch (SBMLConstructorException)
2025-09-08T04:06:40,028         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:40,029   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:06:40,029   ./base/sbml/Parameter.cpp:1671:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:40,029    1671 |   catch (SBMLConstructorException)
2025-09-08T04:06:40,029         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:40,556   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2025-09-08T04:06:40,556   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:40,556     155 |   if (&orig == NULL)
2025-09-08T04:06:40,557         |   ^~
2025-09-08T04:06:40,557   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2025-09-08T04:06:40,557   ./base/sbml/Parameter.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:40,557     179 |   if (&rhs == NULL)
2025-09-08T04:06:40,557         |   ^~
2025-09-08T04:06:40,559   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2025-09-08T04:06:40,559   ./base/sbml/Parameter.cpp:366:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:40,560     366 |   if (&(sid) == NULL)
2025-09-08T04:06:40,560         |   ^~
2025-09-08T04:06:40,560   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2025-09-08T04:06:40,560   ./base/sbml/Parameter.cpp:391:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:40,560     391 |   if (&(name) == NULL)
2025-09-08T04:06:40,560         |   ^~
2025-09-08T04:06:40,560   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2025-09-08T04:06:40,560   ./base/sbml/Parameter.cpp:433:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:40,560     433 |   if (&(units) == NULL)
2025-09-08T04:06:40,560         |   ^~
2025-09-08T04:06:40,569   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2025-09-08T04:06:40,569   ./base/sbml/Parameter.cpp:1548:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:40,569    1548 |   if (&(sid) == NULL)
2025-09-08T04:06:40,569         |   ^~
2025-09-08T04:06:40,579   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2025-09-08T04:06:40,579   ./base/sbml/Parameter.cpp:1575:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:40,579    1575 |   if (&(sid) != NULL)
2025-09-08T04:06:40,579         |   ^~
2025-09-08T04:06:48,912   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:06:48,912                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:06:48,912                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:06:48,912                    from ./base/sbml/Priority.cpp:45:
2025-09-08T04:06:48,912   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:48,913      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:06:48,913         |                           ^~~~~~~~~~~~~~
2025-09-08T04:06:48,913   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:06:48,913                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:06:48,913                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:06:48,913                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:06:48,913                    from ./base/sbml/Priority.cpp:33:
2025-09-08T04:06:48,913   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:48,913     117 |     struct unary_function
2025-09-08T04:06:48,914         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:49,142   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-08T04:06:49,142   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:06:49,143     100 |   if (&orig == NULL)
2025-09-08T04:06:49,143         |             ^
2025-09-08T04:06:49,143   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2025-09-08T04:06:49,143      96 | Priority::Priority (const Priority& orig) :
2025-09-08T04:06:49,143         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:06:49,144   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-08T04:06:49,144   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:06:49,144     122 |   if (&rhs == NULL)
2025-09-08T04:06:49,144         |            ^
2025-09-08T04:06:49,144   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2025-09-08T04:06:49,144     120 | Priority& Priority::operator=(const Priority& rhs)
2025-09-08T04:06:49,145         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:49,158   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2025-09-08T04:06:49,158   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:49,158     503 |   catch (SBMLConstructorException)
2025-09-08T04:06:49,158         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:49,158   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:06:49,158   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:49,159     519 |   catch (SBMLConstructorException)
2025-09-08T04:06:49,159         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:49,584   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2025-09-08T04:06:49,584   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:49,584     100 |   if (&orig == NULL)
2025-09-08T04:06:49,585         |   ^~
2025-09-08T04:06:49,585   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2025-09-08T04:06:49,585   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:49,585     122 |   if (&rhs == NULL)
2025-09-08T04:06:49,585         |   ^~
2025-09-08T04:06:53,204   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:06:53,204                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:06:53,204                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:06:53,204                    from ./base/sbml/RateRule.cpp:49:
2025-09-08T04:06:53,204   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:53,204      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:06:53,204         |                           ^~~~~~~~~~~~~~
2025-09-08T04:06:53,204   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:06:53,205                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:06:53,205                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:06:53,205                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:06:53,205                    from ./base/sbml/RateRule.cpp:34:
2025-09-08T04:06:53,205   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:53,205     117 |     struct unary_function
2025-09-08T04:06:53,205         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:53,436   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_create(unsigned int, unsigned int)’:
2025-09-08T04:06:53,436   ./base/sbml/RateRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:53,436     154 |   catch (SBMLConstructorException)
2025-09-08T04:06:53,436         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:53,437   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:06:53,437   ./base/sbml/RateRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:53,437     170 |   catch (SBMLConstructorException)
2025-09-08T04:06:53,437         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:57,120   In file included from ./base//sbml/SpeciesReference.h:260,
2025-09-08T04:06:57,120                    from ./base/sbml/Reaction.cpp:40:
2025-09-08T04:06:57,120   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:06:57,120      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:06:57,120         |                           ^~~~~~~~~~~~~~
2025-09-08T04:06:57,121   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:06:57,121                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:06:57,121                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:06:57,121                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:06:57,122                    from ./base/sbml/Reaction.cpp:33:
2025-09-08T04:06:57,122   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:06:57,122     117 |     struct unary_function
2025-09-08T04:06:57,122         |            ^~~~~~~~~~~~~~
2025-09-08T04:06:57,430   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-08T04:06:57,430   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:06:57,430     185 |   if (&orig == NULL)
2025-09-08T04:06:57,431         |             ^
2025-09-08T04:06:57,431   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2025-09-08T04:06:57,431     178 | Reaction::Reaction (const Reaction& orig) :
2025-09-08T04:06:57,431         |                     ~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:06:57,433   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-08T04:06:57,434   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:06:57,434     215 |   if (&rhs == NULL)
2025-09-08T04:06:57,434         |            ^
2025-09-08T04:06:57,434   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2025-09-08T04:06:57,434     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2025-09-08T04:06:57,434         |                               ~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:57,450   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-08T04:06:57,450   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:57,450     549 |   if (&(sid) == NULL)
2025-09-08T04:06:57,450         |              ^
2025-09-08T04:06:57,450   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2025-09-08T04:06:57,450     538 | Reaction::setId (const std::string& sid)
2025-09-08T04:06:57,451         |                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:57,452   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-08T04:06:57,452   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:06:57,452     574 |   if (&(name) == NULL)
2025-09-08T04:06:57,452         |               ^
2025-09-08T04:06:57,452   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2025-09-08T04:06:57,452     569 | Reaction::setName (const std::string& name)
2025-09-08T04:06:57,452         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:06:57,456   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-08T04:06:57,456   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:57,456     665 |   if (&(sid) == NULL)
2025-09-08T04:06:57,456         |              ^
2025-09-08T04:06:57,456   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2025-09-08T04:06:57,456     663 | Reaction::setCompartment (const std::string& sid)
2025-09-08T04:06:57,456         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:57,504   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-08T04:06:57,505   ./base/sbml/Reaction.cpp:1900:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:57,505    1900 |   if (&(sid) == NULL)
2025-09-08T04:06:57,505         |              ^
2025-09-08T04:06:57,505   ./base/sbml/Reaction.cpp:1896:42: note: ‘sid’ declared here
2025-09-08T04:06:57,505    1896 | ListOfReactions::get (const std::string& sid) const
2025-09-08T04:06:57,505         |                       ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:57,509   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-08T04:06:57,509   ./base/sbml/Reaction.cpp:1927:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:06:57,509    1927 |   if (&(sid) != NULL)
2025-09-08T04:06:57,510         |              ^
2025-09-08T04:06:57,510   ./base/sbml/Reaction.cpp:1922:45: note: ‘sid’ declared here
2025-09-08T04:06:57,510    1922 | ListOfReactions::remove (const std::string& sid)
2025-09-08T04:06:57,510         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:06:57,515   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2025-09-08T04:06:57,515   ./base/sbml/Reaction.cpp:2005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:57,515    2005 |   catch (SBMLConstructorException)
2025-09-08T04:06:57,516         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:57,517   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:06:57,517   ./base/sbml/Reaction.cpp:2021:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:06:57,517    2021 |   catch (SBMLConstructorException)
2025-09-08T04:06:57,517         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:06:58,062   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2025-09-08T04:06:58,062   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:58,062     215 |   if (&rhs == NULL)
2025-09-08T04:06:58,062         |   ^~
2025-09-08T04:06:58,068   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2025-09-08T04:06:58,068   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:58,069     549 |   if (&(sid) == NULL)
2025-09-08T04:06:58,069         |   ^~
2025-09-08T04:06:58,069   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2025-09-08T04:06:58,069   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:58,069     574 |   if (&(name) == NULL)
2025-09-08T04:06:58,069         |   ^~
2025-09-08T04:06:58,070   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2025-09-08T04:06:58,070   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:58,070     665 |   if (&(sid) == NULL)
2025-09-08T04:06:58,070         |   ^~
2025-09-08T04:06:58,074   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2025-09-08T04:06:58,074   ./base/sbml/Reaction.cpp:1900:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:58,074    1900 |   if (&(sid) == NULL)
2025-09-08T04:06:58,074         |   ^~
2025-09-08T04:06:58,082   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2025-09-08T04:06:58,083   ./base/sbml/Reaction.cpp:1927:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:58,083    1927 |   if (&(sid) != NULL)
2025-09-08T04:06:58,083         |   ^~
2025-09-08T04:06:58,086   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2025-09-08T04:06:58,086   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:06:58,086     185 |   if (&orig == NULL)
2025-09-08T04:06:58,086         |   ^~
2025-09-08T04:07:05,546   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:07:05,546                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:07:05,546                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:07:05,546                    from ./base/sbml/Rule.cpp:49:
2025-09-08T04:07:05,547   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:05,547      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:07:05,547         |                           ^~~~~~~~~~~~~~
2025-09-08T04:07:05,547   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:07:05,547                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:07:05,547                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:07:05,547                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:07:05,547                    from ./base/sbml/Rule.cpp:34:
2025-09-08T04:07:05,547   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:05,548     117 |     struct unary_function
2025-09-08T04:07:05,548         |            ^~~~~~~~~~~~~~
2025-09-08T04:07:05,799   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-08T04:07:05,799   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:07:05,799     110 |   if (&orig == NULL)
2025-09-08T04:07:05,800         |             ^
2025-09-08T04:07:05,800   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2025-09-08T04:07:05,800     106 | Rule::Rule (const Rule& orig) :
2025-09-08T04:07:05,800         |             ~~~~~~~~~~~~^~~~
2025-09-08T04:07:05,801   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-08T04:07:05,802   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:07:05,802     137 |   if (&rhs == NULL)
2025-09-08T04:07:05,802         |            ^
2025-09-08T04:07:05,802   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2025-09-08T04:07:05,802     135 | Rule& Rule::operator=(const Rule& rhs)
2025-09-08T04:07:05,802         |                       ~~~~~~~~~~~~^~~
2025-09-08T04:07:05,807   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-08T04:07:05,807   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2025-09-08T04:07:05,808     326 |   if (&(formula) == NULL)
2025-09-08T04:07:05,808         |                  ^
2025-09-08T04:07:05,808   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2025-09-08T04:07:05,808     324 | Rule::setFormula (const std::string& formula)
2025-09-08T04:07:05,808         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:07:05,811   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-08T04:07:05,811   ./base/sbml/Rule.cpp:399:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:07:05,811     399 |   if (&(sid) == NULL)
2025-09-08T04:07:05,811         |              ^
2025-09-08T04:07:05,811   ./base/sbml/Rule.cpp:397:39: note: ‘sid’ declared here
2025-09-08T04:07:05,811     397 | Rule::setVariable (const std::string& sid)
2025-09-08T04:07:05,812         |                    ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:07:05,812   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-08T04:07:05,812   ./base/sbml/Rule.cpp:427:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2025-09-08T04:07:05,812     427 |   if (&(sname) == NULL)
2025-09-08T04:07:05,812         |                ^
2025-09-08T04:07:05,812   ./base/sbml/Rule.cpp:424:36: note: ‘sname’ declared here
2025-09-08T04:07:05,812     424 | Rule::setUnits (const std::string& sname)
2025-09-08T04:07:05,812         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:07:05,859   ./base/sbml/Rule.cpp: At global scope:
2025-09-08T04:07:05,860   ./base/sbml/Rule.cpp:1432:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:05,860    1432 | struct IdEqRule : public unary_function<SBase*, bool>
2025-09-08T04:07:05,860         |                          ^~~~~~~~~~~~~~
2025-09-08T04:07:05,860   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:05,860     117 |     struct unary_function
2025-09-08T04:07:05,860         |            ^~~~~~~~~~~~~~
2025-09-08T04:07:05,863   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-08T04:07:05,863   ./base/sbml/Rule.cpp:1457:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:07:05,863    1457 |   if (&(sid) == NULL)
2025-09-08T04:07:05,863         |              ^
2025-09-08T04:07:05,863   ./base/sbml/Rule.cpp:1453:38: note: ‘sid’ declared here
2025-09-08T04:07:05,863    1453 | ListOfRules::get (const std::string& sid) const
2025-09-08T04:07:05,864         |                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:07:05,867   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-08T04:07:05,867   ./base/sbml/Rule.cpp:1498:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:07:05,868    1498 |   if (&(sid) != NULL)
2025-09-08T04:07:05,868         |              ^
2025-09-08T04:07:05,868   ./base/sbml/Rule.cpp:1493:41: note: ‘sid’ declared here
2025-09-08T04:07:05,868    1493 | ListOfRules::remove (const std::string& sid)
2025-09-08T04:07:05,868         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:07:05,882   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2025-09-08T04:07:05,882   ./base/sbml/Rule.cpp:1687:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:07:05,882    1687 |   catch (SBMLConstructorException)
2025-09-08T04:07:05,882         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:07:05,883   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:07:05,883   ./base/sbml/Rule.cpp:1703:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:07:05,883    1703 |   catch (SBMLConstructorException)
2025-09-08T04:07:05,883         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:07:05,884   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2025-09-08T04:07:05,884   ./base/sbml/Rule.cpp:1719:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:07:05,884    1719 |   catch (SBMLConstructorException)
2025-09-08T04:07:05,884         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:07:05,884   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:07:05,885   ./base/sbml/Rule.cpp:1735:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:07:05,885    1735 |   catch (SBMLConstructorException)
2025-09-08T04:07:05,885         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:07:05,885   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2025-09-08T04:07:05,885   ./base/sbml/Rule.cpp:1751:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:07:05,885    1751 |   catch (SBMLConstructorException)
2025-09-08T04:07:05,886         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:07:05,886   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:07:05,886   ./base/sbml/Rule.cpp:1767:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:07:05,886    1767 |   catch (SBMLConstructorException)
2025-09-08T04:07:05,886         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:07:06,408   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2025-09-08T04:07:06,408   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:06,408     326 |   if (&(formula) == NULL)
2025-09-08T04:07:06,408         |   ^~
2025-09-08T04:07:06,417   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2025-09-08T04:07:06,417   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:06,417     110 |   if (&orig == NULL)
2025-09-08T04:07:06,417         |   ^~
2025-09-08T04:07:06,417   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2025-09-08T04:07:06,417   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:06,417     137 |   if (&rhs == NULL)
2025-09-08T04:07:06,417         |   ^~
2025-09-08T04:07:06,420   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2025-09-08T04:07:06,420   ./base/sbml/Rule.cpp:399:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:06,420     399 |   if (&(sid) == NULL)
2025-09-08T04:07:06,420         |   ^~
2025-09-08T04:07:06,420   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2025-09-08T04:07:06,420   ./base/sbml/Rule.cpp:427:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:06,421     427 |   if (&(sname) == NULL)
2025-09-08T04:07:06,421         |   ^~
2025-09-08T04:07:06,426   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2025-09-08T04:07:06,426   ./base/sbml/Rule.cpp:1457:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:06,426    1457 |   if (&(sid) == NULL)
2025-09-08T04:07:06,426         |   ^~
2025-09-08T04:07:06,435   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2025-09-08T04:07:06,435   ./base/sbml/Rule.cpp:1498:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:06,435    1498 |   if (&(sid) != NULL)
2025-09-08T04:07:06,435         |   ^~
2025-09-08T04:07:16,731   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:07:16,731                    from ./base//sbml/Model.h:446,
2025-09-08T04:07:16,731                    from ./base/sbml/SBMLConvert.cpp:37:
2025-09-08T04:07:16,731   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:16,731      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:07:16,732         |                           ^~~~~~~~~~~~~~
2025-09-08T04:07:16,732   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:07:16,732                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:07:16,732                    from ./base//sbml/math/ASTNode.h:164,
2025-09-08T04:07:16,732                    from ./base/sbml/SBMLConvert.cpp:34:
2025-09-08T04:07:16,732   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:16,732     117 |     struct unary_function
2025-09-08T04:07:16,732         |            ^~~~~~~~~~~~~~
2025-09-08T04:07:24,393   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:07:24,393                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:07:24,393                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:07:24,393                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:07:24,393                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T04:07:24,393                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2025-09-08T04:07:24,393                    from ./base/sbml/SBMLDocument.cpp:44:
2025-09-08T04:07:24,394   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:24,394      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:07:24,394         |                           ^~~~~~~~~~~~~~
2025-09-08T04:07:24,394   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:07:24,394                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:07:24,394                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:07:24,394                    from /usr/include/c++/14/ios:44,
2025-09-08T04:07:24,394                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:07:24,394                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:07:24,394                    from ./base/sbml/SBMLDocument.cpp:35:
2025-09-08T04:07:24,395   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:24,395     117 |     struct unary_function
2025-09-08T04:07:24,395         |            ^~~~~~~~~~~~~~
2025-09-08T04:07:24,734   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-08T04:07:24,734   ./base/sbml/SBMLDocument.cpp:259:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:07:24,734     259 |   if (&orig == NULL)
2025-09-08T04:07:24,734         |             ^
2025-09-08T04:07:24,734   ./base/sbml/SBMLDocument.cpp:254:49: note: ‘orig’ declared here
2025-09-08T04:07:24,734     254 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2025-09-08T04:07:24,734         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:07:24,736   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-08T04:07:24,737   ./base/sbml/SBMLDocument.cpp:300:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:07:24,737     300 |   if (&rhs == NULL)
2025-09-08T04:07:24,737         |            ^
2025-09-08T04:07:24,737   ./base/sbml/SBMLDocument.cpp:298:59: note: ‘rhs’ declared here
2025-09-08T04:07:24,737     298 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2025-09-08T04:07:24,737         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:07:24,855   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2025-09-08T04:07:24,855   ./base/sbml/SBMLDocument.cpp:1922:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:07:24,855    1922 |   catch (SBMLConstructorException)
2025-09-08T04:07:24,855         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:07:24,856   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2025-09-08T04:07:24,856   ./base/sbml/SBMLDocument.cpp:1938:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:07:24,856    1938 |   catch (SBMLConstructorException)
2025-09-08T04:07:24,856         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:07:24,857   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2025-09-08T04:07:24,857   ./base/sbml/SBMLDocument.cpp:1954:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:07:24,857    1954 |   catch (SBMLConstructorException)
2025-09-08T04:07:24,857         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:07:25,521   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2025-09-08T04:07:25,522   ./base/sbml/SBMLDocument.cpp:300:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:25,522     300 |   if (&rhs == NULL)
2025-09-08T04:07:25,522         |   ^~
2025-09-08T04:07:25,550   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2025-09-08T04:07:25,550   ./base/sbml/SBMLDocument.cpp:259:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:25,551     259 |   if (&orig == NULL)
2025-09-08T04:07:25,551         |   ^~
2025-09-08T04:07:34,362   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:07:34,362                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:07:34,362                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:07:34,362                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:07:34,362                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:07:34,362                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T04:07:34,363                    from ./base/sbml/SBMLError.cpp:41:
2025-09-08T04:07:34,363   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:34,363      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:07:34,363         |                           ^~~~~~~~~~~~~~
2025-09-08T04:07:34,363   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:07:34,363                    from ./base/sbml/SBMLError.cpp:33:
2025-09-08T04:07:34,363   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:34,363     117 |     struct unary_function
2025-09-08T04:07:34,363         |            ^~~~~~~~~~~~~~
2025-09-08T04:07:38,899   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:38,899      86 | struct Delete : public unary_function<XMLError*, void>
2025-09-08T04:07:38,899         |                        ^~~~~~~~~~~~~~
2025-09-08T04:07:38,899   In file included from /usr/include/c++/14/functional:49,
2025-09-08T04:07:38,899                    from ./base/sbml/SBMLErrorLog.cpp:34:
2025-09-08T04:07:38,899   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:38,900     117 |     struct unary_function
2025-09-08T04:07:38,900         |            ^~~~~~~~~~~~~~
2025-09-08T04:07:42,390   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:07:42,390                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:07:42,390                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:07:42,390                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:07:42,390                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:07:42,390                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T04:07:42,391                    from ./base/sbml/SBMLNamespaces.cpp:35:
2025-09-08T04:07:42,391   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:42,391      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:07:42,391         |                           ^~~~~~~~~~~~~~
2025-09-08T04:07:42,391   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:07:42,391                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:07:42,391                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:07:42,391                    from ./base/sbml/SBMLNamespaces.cpp:34:
2025-09-08T04:07:42,391   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:42,392     117 |     struct unary_function
2025-09-08T04:07:42,392         |            ^~~~~~~~~~~~~~
2025-09-08T04:07:42,701   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-08T04:07:42,701   ./base/sbml/SBMLNamespaces.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:07:42,701     175 |   if (&orig == NULL)
2025-09-08T04:07:42,701         |             ^
2025-09-08T04:07:42,702   ./base/sbml/SBMLNamespaces.cpp:173:54: note: ‘orig’ declared here
2025-09-08T04:07:42,702     173 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2025-09-08T04:07:42,702         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:07:42,705   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-08T04:07:42,705   ./base/sbml/SBMLNamespaces.cpp:225:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:07:42,705     225 |   if (&rhs == NULL)
2025-09-08T04:07:42,705         |            ^
2025-09-08T04:07:42,705   ./base/sbml/SBMLNamespaces.cpp:223:49: note: ‘rhs’ declared here
2025-09-08T04:07:42,705     223 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2025-09-08T04:07:42,705         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:07:43,188   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2025-09-08T04:07:43,188   ./base/sbml/SBMLNamespaces.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:43,188     175 |   if (&orig == NULL)
2025-09-08T04:07:43,188         |   ^~
2025-09-08T04:07:43,188   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2025-09-08T04:07:43,188   ./base/sbml/SBMLNamespaces.cpp:225:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:43,188     225 |   if (&rhs == NULL)
2025-09-08T04:07:43,189         |   ^~
2025-09-08T04:07:47,911   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:07:47,911                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:07:47,911                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:07:47,911                    from ./base/sbml/SBMLReader.cpp:39:
2025-09-08T04:07:47,912   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:47,912      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:07:47,912         |                           ^~~~~~~~~~~~~~
2025-09-08T04:07:47,912   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:07:47,912                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:07:47,912                    from ./base/sbml/SBMLReader.cpp:33:
2025-09-08T04:07:47,912   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:47,912     117 |     struct unary_function
2025-09-08T04:07:47,912         |            ^~~~~~~~~~~~~~
2025-09-08T04:07:48,152   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2025-09-08T04:07:48,153   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2025-09-08T04:07:48,153     139 |   if (&xml == NULL) return NULL;
2025-09-08T04:07:48,153         |            ^
2025-09-08T04:07:48,153   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2025-09-08T04:07:48,153     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2025-09-08T04:07:48,153         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:07:48,583   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:07:48,583     139 |   if (&xml == NULL) return NULL;
2025-09-08T04:07:48,583         |   ^~
2025-09-08T04:07:52,287   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:07:52,287                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:07:52,287                    from ./base/sbml/SBMLTransforms.cpp:33:
2025-09-08T04:07:52,288   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:52,288      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:07:52,288         |                           ^~~~~~~~~~~~~~
2025-09-08T04:07:52,288   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:07:52,288                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:07:52,288                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:07:52,288                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:07:52,288                    from ./base//sbml/SBase.h:145,
2025-09-08T04:07:52,288                    from ./base//sbml/SBMLTransforms.h:45:
2025-09-08T04:07:52,289   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:52,289     117 |     struct unary_function
2025-09-08T04:07:52,289         |            ^~~~~~~~~~~~~~
2025-09-08T04:07:59,810   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:07:59,810                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:07:59,811                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:07:59,811                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:07:59,811                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:07:59,811                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2025-09-08T04:07:59,811   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:07:59,811      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:07:59,811         |                           ^~~~~~~~~~~~~~
2025-09-08T04:07:59,812   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:07:59,812                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:07:59,812                    from ./base//sbml/SBMLError.h:457,
2025-09-08T04:07:59,812                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T04:07:59,812   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:07:59,812     117 |     struct unary_function
2025-09-08T04:07:59,812         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:03,477   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:08:03,477                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:08:03,477                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:08:03,477                    from ./base/sbml/SBMLVisitor.cpp:34:
2025-09-08T04:08:03,478   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:03,478      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:08:03,478         |                           ^~~~~~~~~~~~~~
2025-09-08T04:08:03,478   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:08:03,478                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:08:03,478                    from ./base//sbml/SBMLError.h:457,
2025-09-08T04:08:03,478                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T04:08:03,478   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:03,478     117 |     struct unary_function
2025-09-08T04:08:03,479         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:07,150   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:08:07,150                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:08:07,150                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:08:07,150                    from ./base/sbml/SBMLWriter.cpp:42:
2025-09-08T04:08:07,150   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:07,151      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:08:07,151         |                           ^~~~~~~~~~~~~~
2025-09-08T04:08:07,151   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:08:07,151                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:08:07,151                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:08:07,151                    from /usr/include/c++/14/ios:44,
2025-09-08T04:08:07,151                    from ./base/sbml/SBMLWriter.cpp:33:
2025-09-08T04:08:07,151   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:07,151     117 |     struct unary_function
2025-09-08T04:08:07,152         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:07,393   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-08T04:08:07,393   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:08:07,394      85 |   if (&(name) == NULL)
2025-09-08T04:08:07,394         |               ^
2025-09-08T04:08:07,394   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2025-09-08T04:08:07,394      83 | SBMLWriter::setProgramName (const std::string& name)
2025-09-08T04:08:07,394         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:08:07,394   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-08T04:08:07,394   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2025-09-08T04:08:07,394     109 |   if (&(version) == NULL)
2025-09-08T04:08:07,394         |                  ^
2025-09-08T04:08:07,395   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2025-09-08T04:08:07,395     107 | SBMLWriter::setProgramVersion (const std::string& version)
2025-09-08T04:08:07,395         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:08:07,866   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2025-09-08T04:08:07,867   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:07,867      85 |   if (&(name) == NULL)
2025-09-08T04:08:07,867         |   ^~
2025-09-08T04:08:07,867   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2025-09-08T04:08:07,867   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:07,867     109 |   if (&(version) == NULL)
2025-09-08T04:08:07,867         |   ^~
2025-09-08T04:08:11,383   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:11,383     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2025-09-08T04:08:11,383         |                           ^~~~~~~~~~~~~~
2025-09-08T04:08:11,383   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:08:11,383                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:08:11,384                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:08:11,384                    from /usr/include/c++/14/iomanip:42,
2025-09-08T04:08:11,384                    from ./base/sbml/SBO.cpp:33:
2025-09-08T04:08:11,384   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:11,384     117 |     struct unary_function
2025-09-08T04:08:11,384         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:19,529   In file included from ./base//sbml/Parameter.h:169,
2025-09-08T04:08:19,529                    from ./base//sbml/KineticLaw.h:169,
2025-09-08T04:08:19,529                    from ./base/sbml/SBase.cpp:46:
2025-09-08T04:08:19,529   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:19,530      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:08:19,530         |                           ^~~~~~~~~~~~~~
2025-09-08T04:08:19,530   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:08:19,530                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:08:19,530                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:08:19,530                    from /usr/include/c++/14/ios:44,
2025-09-08T04:08:19,530                    from /usr/include/c++/14/istream:40,
2025-09-08T04:08:19,530                    from /usr/include/c++/14/sstream:40,
2025-09-08T04:08:19,530                    from ./base/sbml/SBase.cpp:33:
2025-09-08T04:08:19,531   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:19,531     117 |     struct unary_function
2025-09-08T04:08:19,531         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:19,924   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:19,925      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2025-09-08T04:08:19,925         |                                    ^~~~~~~~~~~~~~
2025-09-08T04:08:19,925   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:19,925     117 |     struct unary_function
2025-09-08T04:08:19,925         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:19,925   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:19,925      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2025-09-08T04:08:19,925         |                                   ^~~~~~~~~~~~~~
2025-09-08T04:08:19,926   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:19,926     117 |     struct unary_function
2025-09-08T04:08:19,926         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:19,943   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T04:08:19,943   ./base/sbml/SBase.cpp:382:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:08:19,943     382 |   if (&orig == NULL)
2025-09-08T04:08:19,943         |             ^
2025-09-08T04:08:19,943   ./base/sbml/SBase.cpp:380:27: note: ‘orig’ declared here
2025-09-08T04:08:19,944     380 | SBase::SBase(const SBase& orig)
2025-09-08T04:08:19,944         |              ~~~~~~~~~~~~~^~~~
2025-09-08T04:08:19,953   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T04:08:19,953   ./base/sbml/SBase.cpp:495:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:08:19,953     495 |   if (&rhs == NULL)
2025-09-08T04:08:19,953         |            ^
2025-09-08T04:08:19,953   ./base/sbml/SBase.cpp:493:38: note: ‘rhs’ declared here
2025-09-08T04:08:19,953     493 | SBase& SBase::operator=(const SBase& rhs)
2025-09-08T04:08:19,954         |                         ~~~~~~~~~~~~~^~~
2025-09-08T04:08:19,971   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T04:08:19,971   ./base/sbml/SBase.cpp:1164:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T04:08:19,971    1164 |   if (&(metaid) == NULL)
2025-09-08T04:08:19,972         |                 ^
2025-09-08T04:08:19,972   ./base/sbml/SBase.cpp:1162:38: note: ‘metaid’ declared here
2025-09-08T04:08:19,972    1162 | SBase::setMetaId (const std::string& metaid)
2025-09-08T04:08:19,972         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:08:19,978   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T04:08:19,978   ./base/sbml/SBase.cpp:1349:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2025-09-08T04:08:19,978    1349 |   if (&(annotation) == NULL)
2025-09-08T04:08:19,978         |                     ^
2025-09-08T04:08:19,978   ./base/sbml/SBase.cpp:1347:42: note: ‘annotation’ declared here
2025-09-08T04:08:19,979    1347 | SBase::setAnnotation (const std::string& annotation)
2025-09-08T04:08:19,979         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T04:08:19,995   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T04:08:19,995   ./base/sbml/SBase.cpp:1746:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2025-09-08T04:08:19,995    1746 |   if (&(notes) == NULL)
2025-09-08T04:08:19,995         |                ^
2025-09-08T04:08:19,995   ./base/sbml/SBase.cpp:1743:36: note: ‘notes’ declared here
2025-09-08T04:08:19,995    1743 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2025-09-08T04:08:19,995         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:08:20,026   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T04:08:20,026   ./base/sbml/SBase.cpp:2396:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2025-09-08T04:08:20,027    2396 |   if (&(sboid) == NULL)
2025-09-08T04:08:20,027         |                ^
2025-09-08T04:08:20,027   ./base/sbml/SBase.cpp:2394:39: note: ‘sboid’ declared here
2025-09-08T04:08:20,027    2394 | SBase::setSBOTerm (const std::string &sboid)
2025-09-08T04:08:20,027         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:08:20,079   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2025-09-08T04:08:20,079   ./base/sbml/SBase.cpp:3701:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2025-09-08T04:08:20,079    3701 |   if (&pkgName == NULL)
2025-09-08T04:08:20,079         |                ^
2025-09-08T04:08:20,080   ./base/sbml/SBase.cpp:3700:22: note: ‘pkgName’ declared here
2025-09-08T04:08:20,080    3700 |   const std::string& pkgName = getPackageName();
2025-09-08T04:08:20,080         |                      ^~~~~~~
2025-09-08T04:08:20,258   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T04:08:20,259   ./base/sbml/SBase.cpp:6021:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:08:20,259    6021 |   if (&node == NULL) return;
2025-09-08T04:08:20,259         |             ^
2025-09-08T04:08:20,259   ./base/sbml/SBase.cpp:6019:22: note: ‘node’ declared here
2025-09-08T04:08:20,259    6019 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2025-09-08T04:08:20,259         |             ~~~~~~~~~^~~~
2025-09-08T04:08:20,960   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2025-09-08T04:08:20,960   ./base/sbml/SBase.cpp:2396:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:20,960    2396 |   if (&(sboid) == NULL)
2025-09-08T04:08:20,960         |   ^~
2025-09-08T04:08:20,967   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2025-09-08T04:08:20,967   ./base/sbml/SBase.cpp:1349:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:20,968    1349 |   if (&(annotation) == NULL)
2025-09-08T04:08:20,968         |   ^~
2025-09-08T04:08:20,987   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2025-09-08T04:08:20,987   ./base/sbml/SBase.cpp:1164:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:20,987    1164 |   if (&(metaid) == NULL)
2025-09-08T04:08:20,987         |   ^~
2025-09-08T04:08:21,033   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2025-09-08T04:08:21,034   ./base/sbml/SBase.cpp:495:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:21,034     495 |   if (&rhs == NULL)
2025-09-08T04:08:21,034         |   ^~
2025-09-08T04:08:21,041   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2025-09-08T04:08:21,041   ./base/sbml/SBase.cpp:382:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:21,041     382 |   if (&orig == NULL)
2025-09-08T04:08:21,041         |   ^~
2025-09-08T04:08:21,052   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2025-09-08T04:08:21,052   ./base/sbml/SBase.cpp:1746:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:21,052    1746 |   if (&(notes) == NULL)
2025-09-08T04:08:21,052         |   ^~
2025-09-08T04:08:21,058   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2025-09-08T04:08:21,058   ./base/sbml/SBase.cpp:6021:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:21,058    6021 |   if (&node == NULL) return;
2025-09-08T04:08:21,058         |   ^~
2025-09-08T04:08:37,932   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:08:37,932                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:08:37,932                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:08:37,932                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2025-09-08T04:08:37,932   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:37,932      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:08:37,932         |                           ^~~~~~~~~~~~~~
2025-09-08T04:08:37,933   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:08:37,933                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:08:37,933                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:08:37,934                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:08:37,934                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2025-09-08T04:08:37,934   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:37,934     117 |     struct unary_function
2025-09-08T04:08:37,934         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:38,192   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T04:08:38,192   ./base/sbml/SimpleSpeciesReference.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:08:38,192      98 |   if (&orig == NULL)
2025-09-08T04:08:38,192         |             ^
2025-09-08T04:08:38,192   ./base/sbml/SimpleSpeciesReference.cpp:95:78: note: ‘orig’ declared here
2025-09-08T04:08:38,192      95 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2025-09-08T04:08:38,192         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:08:38,194   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T04:08:38,194   ./base/sbml/SimpleSpeciesReference.cpp:116:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:08:38,195     116 |   if (&rhs == NULL)
2025-09-08T04:08:38,195         |            ^
2025-09-08T04:08:38,195   ./base/sbml/SimpleSpeciesReference.cpp:114:89: note: ‘rhs’ declared here
2025-09-08T04:08:38,195     114 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2025-09-08T04:08:38,195         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:38,198   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T04:08:38,198   ./base/sbml/SimpleSpeciesReference.cpp:216:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:38,199     216 |   if (&(sid) == NULL)
2025-09-08T04:08:38,199         |              ^
2025-09-08T04:08:38,199   ./base/sbml/SimpleSpeciesReference.cpp:214:56: note: ‘sid’ declared here
2025-09-08T04:08:38,199     214 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2025-09-08T04:08:38,199         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:38,200   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T04:08:38,200   ./base/sbml/SimpleSpeciesReference.cpp:238:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:38,200     238 |   if (&(sid) == NULL)
2025-09-08T04:08:38,200         |              ^
2025-09-08T04:08:38,201   ./base/sbml/SimpleSpeciesReference.cpp:236:51: note: ‘sid’ declared here
2025-09-08T04:08:38,201     236 | SimpleSpeciesReference::setId (const std::string& sid)
2025-09-08T04:08:38,201         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:38,205   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T04:08:38,206   ./base/sbml/SimpleSpeciesReference.cpp:302:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:08:38,206     302 |   if (&(name) == NULL)
2025-09-08T04:08:38,206         |               ^
2025-09-08T04:08:38,206   ./base/sbml/SimpleSpeciesReference.cpp:300:53: note: ‘name’ declared here
2025-09-08T04:08:38,206     300 | SimpleSpeciesReference::setName (const std::string& name)
2025-09-08T04:08:38,206         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:08:38,654   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2025-09-08T04:08:38,654   ./base/sbml/SimpleSpeciesReference.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:38,654      98 |   if (&orig == NULL)
2025-09-08T04:08:38,654         |   ^~
2025-09-08T04:08:38,655   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2025-09-08T04:08:38,655   ./base/sbml/SimpleSpeciesReference.cpp:116:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:38,655     116 |   if (&rhs == NULL)
2025-09-08T04:08:38,655         |   ^~
2025-09-08T04:08:38,656   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2025-09-08T04:08:38,656   ./base/sbml/SimpleSpeciesReference.cpp:216:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:38,656     216 |   if (&(sid) == NULL)
2025-09-08T04:08:38,657         |   ^~
2025-09-08T04:08:38,657   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2025-09-08T04:08:38,657   ./base/sbml/SimpleSpeciesReference.cpp:238:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:38,658     238 |   if (&(sid) == NULL)
2025-09-08T04:08:38,658         |   ^~
2025-09-08T04:08:38,658   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2025-09-08T04:08:38,658   ./base/sbml/SimpleSpeciesReference.cpp:302:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:38,659     302 |   if (&(name) == NULL)
2025-09-08T04:08:38,659         |   ^~
2025-09-08T04:08:42,975   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:08:42,975                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:08:42,975                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:08:42,975                    from ./base/sbml/Species.cpp:42:
2025-09-08T04:08:42,975   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:42,975      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:08:42,975         |                           ^~~~~~~~~~~~~~
2025-09-08T04:08:42,976   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:08:42,976                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:08:42,976                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:08:42,976                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:08:42,977                    from ./base/sbml/Species.cpp:35:
2025-09-08T04:08:42,977   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:42,977     117 |     struct unary_function
2025-09-08T04:08:42,977         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:43,224   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T04:08:43,225   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:08:43,225     167 |   if (&orig == NULL)
2025-09-08T04:08:43,225         |             ^
2025-09-08T04:08:43,225   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2025-09-08T04:08:43,225     164 | Species::Species(const Species& orig) :
2025-09-08T04:08:43,225         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:08:43,227   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T04:08:43,227   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:08:43,227     204 |   if (&rhs == NULL)
2025-09-08T04:08:43,228         |            ^
2025-09-08T04:08:43,228   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2025-09-08T04:08:43,228     202 | Species& Species::operator=(const Species& rhs)
2025-09-08T04:08:43,228         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:43,234   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T04:08:43,234   ./base/sbml/Species.cpp:616:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:43,235     616 |   if (&(sid) == NULL)
2025-09-08T04:08:43,235         |              ^
2025-09-08T04:08:43,235   ./base/sbml/Species.cpp:605:36: note: ‘sid’ declared here
2025-09-08T04:08:43,235     605 | Species::setId (const std::string& sid)
2025-09-08T04:08:43,235         |                 ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:43,235   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T04:08:43,235   ./base/sbml/Species.cpp:641:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:08:43,235     641 |   if (&(name) == NULL)
2025-09-08T04:08:43,235         |               ^
2025-09-08T04:08:43,236   ./base/sbml/Species.cpp:636:38: note: ‘name’ declared here
2025-09-08T04:08:43,236     636 | Species::setName (const std::string& name)
2025-09-08T04:08:43,236         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:08:43,236   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T04:08:43,236   ./base/sbml/Species.cpp:671:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:43,236     671 |   if (&(sid) == NULL)
2025-09-08T04:08:43,237         |              ^
2025-09-08T04:08:43,237   ./base/sbml/Species.cpp:669:45: note: ‘sid’ declared here
2025-09-08T04:08:43,237     669 | Species::setSpeciesType (const std::string& sid)
2025-09-08T04:08:43,237         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:43,237   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T04:08:43,238   ./base/sbml/Species.cpp:698:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:43,238     698 |   if (&(sid) == NULL)
2025-09-08T04:08:43,238         |              ^
2025-09-08T04:08:43,238   ./base/sbml/Species.cpp:696:45: note: ‘sid’ declared here
2025-09-08T04:08:43,238     696 | Species::setCompartment (const std::string& sid)
2025-09-08T04:08:43,238         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:43,239   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T04:08:43,239   ./base/sbml/Species.cpp:757:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:43,239     757 |   if (&(sid) == NULL)
2025-09-08T04:08:43,239         |              ^
2025-09-08T04:08:43,239   ./base/sbml/Species.cpp:755:48: note: ‘sid’ declared here
2025-09-08T04:08:43,240     755 | Species::setSubstanceUnits (const std::string& sid)
2025-09-08T04:08:43,240         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:43,240   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T04:08:43,240   ./base/sbml/Species.cpp:779:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:43,240     779 |   if (&(sid) == NULL)
2025-09-08T04:08:43,240         |              ^
2025-09-08T04:08:43,240   ./base/sbml/Species.cpp:777:50: note: ‘sid’ declared here
2025-09-08T04:08:43,240     777 | Species::setSpatialSizeUnits (const std::string& sid)
2025-09-08T04:08:43,240         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:43,243   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T04:08:43,243   ./base/sbml/Species.cpp:890:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:43,243     890 |   if (&(sid) == NULL)
2025-09-08T04:08:43,243         |              ^
2025-09-08T04:08:43,243   ./base/sbml/Species.cpp:888:50: note: ‘sid’ declared here
2025-09-08T04:08:43,243     888 | Species::setConversionFactor (const std::string& sid)
2025-09-08T04:08:43,243         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:43,297   ./base/sbml/Species.cpp: At global scope:
2025-09-08T04:08:43,297   ./base/sbml/Species.cpp:1915:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:43,297    1915 | struct IdEqS : public unary_function<SBase*, bool>
2025-09-08T04:08:43,297         |                       ^~~~~~~~~~~~~~
2025-09-08T04:08:43,297   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:43,297     117 |     struct unary_function
2025-09-08T04:08:43,298         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:43,300   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T04:08:43,300   ./base/sbml/Species.cpp:1938:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:43,301    1938 |   if (&(sid) == NULL)
2025-09-08T04:08:43,301         |              ^
2025-09-08T04:08:43,301   ./base/sbml/Species.cpp:1934:40: note: ‘sid’ declared here
2025-09-08T04:08:43,301    1934 | ListOfSpecies::get (const std::string& sid) const
2025-09-08T04:08:43,301         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:43,304   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T04:08:43,304   ./base/sbml/Species.cpp:1965:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:43,304    1965 |   if (&(sid) != NULL)
2025-09-08T04:08:43,304         |              ^
2025-09-08T04:08:43,304   ./base/sbml/Species.cpp:1960:43: note: ‘sid’ declared here
2025-09-08T04:08:43,304    1960 | ListOfSpecies::remove (const std::string& sid)
2025-09-08T04:08:43,305         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:43,310   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2025-09-08T04:08:43,310   ./base/sbml/Species.cpp:2043:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:08:43,310    2043 |   catch (SBMLConstructorException)
2025-09-08T04:08:43,310         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:08:43,311   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:08:43,311   ./base/sbml/Species.cpp:2059:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:08:43,311    2059 |   catch (SBMLConstructorException)
2025-09-08T04:08:43,311         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:08:43,851   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2025-09-08T04:08:43,851   ./base/sbml/Species.cpp:1938:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,851    1938 |   if (&(sid) == NULL)
2025-09-08T04:08:43,851         |   ^~
2025-09-08T04:08:43,854   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2025-09-08T04:08:43,855   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,855     167 |   if (&orig == NULL)
2025-09-08T04:08:43,855         |   ^~
2025-09-08T04:08:43,855   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2025-09-08T04:08:43,855   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,855     204 |   if (&rhs == NULL)
2025-09-08T04:08:43,855         |   ^~
2025-09-08T04:08:43,858   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2025-09-08T04:08:43,858   ./base/sbml/Species.cpp:616:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,858     616 |   if (&(sid) == NULL)
2025-09-08T04:08:43,859         |   ^~
2025-09-08T04:08:43,859   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2025-09-08T04:08:43,859   ./base/sbml/Species.cpp:641:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,859     641 |   if (&(name) == NULL)
2025-09-08T04:08:43,859         |   ^~
2025-09-08T04:08:43,859   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2025-09-08T04:08:43,859   ./base/sbml/Species.cpp:671:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,859     671 |   if (&(sid) == NULL)
2025-09-08T04:08:43,859         |   ^~
2025-09-08T04:08:43,859   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2025-09-08T04:08:43,860   ./base/sbml/Species.cpp:698:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,860     698 |   if (&(sid) == NULL)
2025-09-08T04:08:43,860         |   ^~
2025-09-08T04:08:43,860   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2025-09-08T04:08:43,860   ./base/sbml/Species.cpp:757:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,860     757 |   if (&(sid) == NULL)
2025-09-08T04:08:43,860         |   ^~
2025-09-08T04:08:43,861   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2025-09-08T04:08:43,861   ./base/sbml/Species.cpp:779:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,861     779 |   if (&(sid) == NULL)
2025-09-08T04:08:43,861         |   ^~
2025-09-08T04:08:43,862   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2025-09-08T04:08:43,862   ./base/sbml/Species.cpp:890:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,862     890 |   if (&(sid) == NULL)
2025-09-08T04:08:43,862         |   ^~
2025-09-08T04:08:43,875   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2025-09-08T04:08:43,875   ./base/sbml/Species.cpp:1965:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:43,876    1965 |   if (&(sid) != NULL)
2025-09-08T04:08:43,876         |   ^~
2025-09-08T04:08:53,771   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:08:53,771                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:08:53,772                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:08:53,772                    from ./base/sbml/SpeciesReference.cpp:48:
2025-09-08T04:08:53,772   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:53,772      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:08:53,772         |                           ^~~~~~~~~~~~~~
2025-09-08T04:08:53,772   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:08:53,772                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:08:53,772                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:08:53,772                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:08:53,773                    from ./base/sbml/SpeciesReference.cpp:35:
2025-09-08T04:08:53,773   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:53,773     117 |     struct unary_function
2025-09-08T04:08:53,773         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:54,028   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T04:08:54,028   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:08:54,028     129 |   if (&orig == NULL)
2025-09-08T04:08:54,028         |             ^
2025-09-08T04:08:54,029   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2025-09-08T04:08:54,029     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2025-09-08T04:08:54,029         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:08:54,030   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T04:08:54,030   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:08:54,030     157 |   if (&rhs == NULL)
2025-09-08T04:08:54,030         |            ^
2025-09-08T04:08:54,031   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2025-09-08T04:08:54,031     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2025-09-08T04:08:54,031         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:54,065   ./base/sbml/SpeciesReference.cpp: At global scope:
2025-09-08T04:08:54,066   ./base/sbml/SpeciesReference.cpp:1209:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:08:54,066    1209 | struct IdEqSSR : public unary_function<SBase*, bool>
2025-09-08T04:08:54,066         |                         ^~~~~~~~~~~~~~
2025-09-08T04:08:54,066   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:08:54,066     117 |     struct unary_function
2025-09-08T04:08:54,066         |            ^~~~~~~~~~~~~~
2025-09-08T04:08:54,070   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T04:08:54,070   ./base/sbml/SpeciesReference.cpp:1251:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:54,070    1251 |   if (&(sid) == NULL)
2025-09-08T04:08:54,070         |              ^
2025-09-08T04:08:54,070   ./base/sbml/SpeciesReference.cpp:1247:50: note: ‘sid’ declared here
2025-09-08T04:08:54,070    1247 | ListOfSpeciesReferences::get (const std::string& sid) const
2025-09-08T04:08:54,071         |                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:54,073   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T04:08:54,073   ./base/sbml/SpeciesReference.cpp:1279:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:08:54,074    1279 |   if (&(sid) != NULL)
2025-09-08T04:08:54,074         |              ^
2025-09-08T04:08:54,074   ./base/sbml/SpeciesReference.cpp:1274:53: note: ‘sid’ declared here
2025-09-08T04:08:54,074    1274 | ListOfSpeciesReferences::remove (const std::string& sid)
2025-09-08T04:08:54,074         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:08:54,085   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2025-09-08T04:08:54,085   ./base/sbml/SpeciesReference.cpp:1448:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:08:54,085    1448 |   catch (SBMLConstructorException)
2025-09-08T04:08:54,086         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:08:54,086   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:08:54,086   ./base/sbml/SpeciesReference.cpp:1464:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:08:54,086    1464 |   catch (SBMLConstructorException)
2025-09-08T04:08:54,086         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:08:54,087   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2025-09-08T04:08:54,087   ./base/sbml/SpeciesReference.cpp:1480:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:08:54,087    1480 |   catch (SBMLConstructorException)
2025-09-08T04:08:54,087         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:08:54,088   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:08:54,088   ./base/sbml/SpeciesReference.cpp:1496:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:08:54,088    1496 |   catch (SBMLConstructorException)
2025-09-08T04:08:54,088         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:08:54,601   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2025-09-08T04:08:54,601   ./base/sbml/SpeciesReference.cpp:1251:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:54,601    1251 |   if (&(sid) == NULL)
2025-09-08T04:08:54,601         |   ^~
2025-09-08T04:08:54,604   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2025-09-08T04:08:54,605   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:54,605     129 |   if (&orig == NULL)
2025-09-08T04:08:54,605         |   ^~
2025-09-08T04:08:54,605   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2025-09-08T04:08:54,605   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:54,605     157 |   if (&rhs == NULL)
2025-09-08T04:08:54,605         |   ^~
2025-09-08T04:08:54,618   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2025-09-08T04:08:54,618   ./base/sbml/SpeciesReference.cpp:1279:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:08:54,618    1279 |   if (&(sid) != NULL)
2025-09-08T04:08:54,618         |   ^~
2025-09-08T04:09:00,364   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:09:00,364                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:09:00,364                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:09:00,364                    from ./base/sbml/SpeciesType.cpp:41:
2025-09-08T04:09:00,364   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:09:00,364      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:09:00,364         |                           ^~~~~~~~~~~~~~
2025-09-08T04:09:00,365   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:09:00,365                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:09:00,365                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:09:00,365                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:09:00,366                    from ./base/sbml/SpeciesType.cpp:33:
2025-09-08T04:09:00,366   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:09:00,366     117 |     struct unary_function
2025-09-08T04:09:00,366         |            ^~~~~~~~~~~~~~
2025-09-08T04:09:00,607   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T04:09:00,608   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:09:00,608      92 |   if (&orig == NULL)
2025-09-08T04:09:00,608         |             ^
2025-09-08T04:09:00,608   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2025-09-08T04:09:00,608      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2025-09-08T04:09:00,608         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:00,610   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T04:09:00,610   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:09:00,610     109 |   if (&rhs == NULL)
2025-09-08T04:09:00,610         |            ^
2025-09-08T04:09:00,610   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2025-09-08T04:09:00,611     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2025-09-08T04:09:00,611         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:00,615   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T04:09:00,615   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:09:00,615     206 |   if (&(sid) == NULL)
2025-09-08T04:09:00,615         |              ^
2025-09-08T04:09:00,615   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2025-09-08T04:09:00,616     195 | SpeciesType::setId (const std::string& sid)
2025-09-08T04:09:00,616         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:00,617   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T04:09:00,617   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:09:00,617     231 |   if (&(name) == NULL)
2025-09-08T04:09:00,617         |               ^
2025-09-08T04:09:00,617   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2025-09-08T04:09:00,617     226 | SpeciesType::setName (const std::string& name)
2025-09-08T04:09:00,617         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:00,628   ./base/sbml/SpeciesType.cpp: At global scope:
2025-09-08T04:09:00,628   ./base/sbml/SpeciesType.cpp:541:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:09:00,629     541 | struct IdEqST : public unary_function<SBase*, bool>
2025-09-08T04:09:00,629         |                        ^~~~~~~~~~~~~~
2025-09-08T04:09:00,629   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:09:00,629     117 |     struct unary_function
2025-09-08T04:09:00,629         |            ^~~~~~~~~~~~~~
2025-09-08T04:09:00,633   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T04:09:00,633   ./base/sbml/SpeciesType.cpp:566:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:09:00,633     566 |   if (&(sid) == NULL)
2025-09-08T04:09:00,633         |              ^
2025-09-08T04:09:00,633   ./base/sbml/SpeciesType.cpp:562:45: note: ‘sid’ declared here
2025-09-08T04:09:00,633     562 | ListOfSpeciesTypes::get (const std::string& sid) const
2025-09-08T04:09:00,633         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:00,637   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T04:09:00,637   ./base/sbml/SpeciesType.cpp:594:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:09:00,637     594 |   if (&(sid) != NULL)
2025-09-08T04:09:00,637         |              ^
2025-09-08T04:09:00,638   ./base/sbml/SpeciesType.cpp:589:48: note: ‘sid’ declared here
2025-09-08T04:09:00,638     589 | ListOfSpeciesTypes::remove (const std::string& sid)
2025-09-08T04:09:00,638         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:00,643   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2025-09-08T04:09:00,643   ./base/sbml/SpeciesType.cpp:673:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:00,643     673 |   catch (SBMLConstructorException)
2025-09-08T04:09:00,643         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:00,644   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:09:00,645   ./base/sbml/SpeciesType.cpp:689:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:00,645     689 |   catch (SBMLConstructorException)
2025-09-08T04:09:00,645         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:01,128   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2025-09-08T04:09:01,129   ./base/sbml/SpeciesType.cpp:566:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:01,129     566 |   if (&(sid) == NULL)
2025-09-08T04:09:01,129         |   ^~
2025-09-08T04:09:01,132   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2025-09-08T04:09:01,132   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:01,132      92 |   if (&orig == NULL)
2025-09-08T04:09:01,133         |   ^~
2025-09-08T04:09:01,133   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2025-09-08T04:09:01,133   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:01,133     109 |   if (&rhs == NULL)
2025-09-08T04:09:01,133         |   ^~
2025-09-08T04:09:01,136   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2025-09-08T04:09:01,136   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:01,136     206 |   if (&(sid) == NULL)
2025-09-08T04:09:01,136         |   ^~
2025-09-08T04:09:01,137   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2025-09-08T04:09:01,137   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:01,137     231 |   if (&(name) == NULL)
2025-09-08T04:09:01,137         |   ^~
2025-09-08T04:09:01,145   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2025-09-08T04:09:01,145   ./base/sbml/SpeciesType.cpp:594:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:01,145     594 |   if (&(sid) != NULL)
2025-09-08T04:09:01,145         |   ^~
2025-09-08T04:09:05,915   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:09:05,915                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:09:05,915                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:09:05,915                    from ./base/sbml/StoichiometryMath.cpp:46:
2025-09-08T04:09:05,916   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:09:05,916      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:09:05,916         |                           ^~~~~~~~~~~~~~
2025-09-08T04:09:05,916   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:09:05,916                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:09:05,916                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:09:05,916                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:09:05,916                    from ./base/sbml/StoichiometryMath.cpp:33:
2025-09-08T04:09:05,917   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:09:05,917     117 |     struct unary_function
2025-09-08T04:09:05,917         |            ^~~~~~~~~~~~~~
2025-09-08T04:09:06,146   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T04:09:06,146   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:09:06,146      98 |   if (&orig == NULL)
2025-09-08T04:09:06,146         |             ^
2025-09-08T04:09:06,146   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2025-09-08T04:09:06,146      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2025-09-08T04:09:06,146         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:06,147   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T04:09:06,148   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:09:06,148     120 |   if (&rhs == NULL)
2025-09-08T04:09:06,148         |            ^
2025-09-08T04:09:06,148   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2025-09-08T04:09:06,148     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2025-09-08T04:09:06,148         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:06,178   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2025-09-08T04:09:06,178   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:06,178     627 |   catch (SBMLConstructorException)
2025-09-08T04:09:06,178         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:06,179   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:09:06,179   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:06,179     643 |   catch (SBMLConstructorException)
2025-09-08T04:09:06,179         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:06,602   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2025-09-08T04:09:06,602   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:06,602      98 |   if (&orig == NULL)
2025-09-08T04:09:06,602         |   ^~
2025-09-08T04:09:06,602   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2025-09-08T04:09:06,602   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:06,602     120 |   if (&rhs == NULL)
2025-09-08T04:09:06,602         |   ^~
2025-09-08T04:09:14,420   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:09:14,420                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:09:14,420                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:09:14,420                    from ./base/sbml/Trigger.cpp:46:
2025-09-08T04:09:14,420   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:09:14,421      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:09:14,421         |                           ^~~~~~~~~~~~~~
2025-09-08T04:09:14,422   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:09:14,422                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:09:14,422                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:09:14,422                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:09:14,422                    from ./base/sbml/Trigger.cpp:33:
2025-09-08T04:09:14,422   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:09:14,422     117 |     struct unary_function
2025-09-08T04:09:14,422         |            ^~~~~~~~~~~~~~
2025-09-08T04:09:14,664   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T04:09:14,664   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:09:14,664     106 |   if (&orig == NULL)
2025-09-08T04:09:14,664         |             ^
2025-09-08T04:09:14,665   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2025-09-08T04:09:14,665     102 | Trigger::Trigger (const Trigger& orig) :
2025-09-08T04:09:14,665         |                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:14,667   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T04:09:14,667   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:09:14,667     131 |   if (&rhs == NULL)
2025-09-08T04:09:14,667         |            ^
2025-09-08T04:09:14,667   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2025-09-08T04:09:14,667     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2025-09-08T04:09:14,667         |                             ~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:14,685   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2025-09-08T04:09:14,685   ./base/sbml/Trigger.cpp:670:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:14,685     670 |   catch (SBMLConstructorException)
2025-09-08T04:09:14,685         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:14,685   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:09:14,686   ./base/sbml/Trigger.cpp:686:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:14,686     686 |   catch (SBMLConstructorException)
2025-09-08T04:09:14,686         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:15,109   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2025-09-08T04:09:15,110   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:15,110     106 |   if (&orig == NULL)
2025-09-08T04:09:15,110         |   ^~
2025-09-08T04:09:15,110   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2025-09-08T04:09:15,110   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:15,110     131 |   if (&rhs == NULL)
2025-09-08T04:09:15,110         |   ^~
2025-09-08T04:09:19,194   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:09:19,195                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:09:19,195                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:09:19,195                    from ./base/sbml/Unit.cpp:41:
2025-09-08T04:09:19,195   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:09:19,195      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:09:19,195         |                           ^~~~~~~~~~~~~~
2025-09-08T04:09:19,195   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:09:19,195                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:09:19,196                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:09:19,196                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:09:19,196                    from ./base/sbml/Unit.cpp:33:
2025-09-08T04:09:19,196   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:09:19,196     117 |     struct unary_function
2025-09-08T04:09:19,196         |            ^~~~~~~~~~~~~~
2025-09-08T04:09:19,424   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T04:09:19,425   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:09:19,425     150 |   if (&orig == NULL)
2025-09-08T04:09:19,425         |             ^
2025-09-08T04:09:19,425   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2025-09-08T04:09:19,425     147 | Unit::Unit(const Unit& orig) :
2025-09-08T04:09:19,425         |            ~~~~~~~~~~~~^~~~
2025-09-08T04:09:19,426   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T04:09:19,427   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:09:19,427     179 |   if (&rhs == NULL)
2025-09-08T04:09:19,427         |            ^
2025-09-08T04:09:19,427   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2025-09-08T04:09:19,427     177 | Unit& Unit::operator=(const Unit& rhs)
2025-09-08T04:09:19,427         |                       ~~~~~~~~~~~~^~~
2025-09-08T04:09:19,513   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2025-09-08T04:09:19,513   ./base/sbml/Unit.cpp:2217:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:19,513    2217 |   catch (SBMLConstructorException)
2025-09-08T04:09:19,513         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:19,513   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:09:19,514   ./base/sbml/Unit.cpp:2233:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:19,514    2233 |   catch (SBMLConstructorException)
2025-09-08T04:09:19,514         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:20,020   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2025-09-08T04:09:20,020   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:20,021     150 |   if (&orig == NULL)
2025-09-08T04:09:20,021         |   ^~
2025-09-08T04:09:20,021   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2025-09-08T04:09:20,021   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:20,021     179 |   if (&rhs == NULL)
2025-09-08T04:09:20,021         |   ^~
2025-09-08T04:09:26,836   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:09:26,836                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:09:26,836                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:09:26,837                    from ./base/sbml/UnitDefinition.cpp:44:
2025-09-08T04:09:26,837   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:09:26,837      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:09:26,837         |                           ^~~~~~~~~~~~~~
2025-09-08T04:09:26,838   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:09:26,838                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:09:26,838                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:09:26,838                    from ./base//sbml/xml/XMLNode.h:151,
2025-09-08T04:09:26,838                    from ./base/sbml/UnitDefinition.cpp:34:
2025-09-08T04:09:26,838   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:09:26,838     117 |     struct unary_function
2025-09-08T04:09:26,838         |            ^~~~~~~~~~~~~~
2025-09-08T04:09:27,071   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T04:09:27,071   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:09:27,071     104 |   if (&orig == NULL)
2025-09-08T04:09:27,071         |             ^
2025-09-08T04:09:27,071   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2025-09-08T04:09:27,071     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2025-09-08T04:09:27,071         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:27,073   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T04:09:27,073   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:09:27,073     123 |   if (&rhs == NULL)
2025-09-08T04:09:27,073         |            ^
2025-09-08T04:09:27,074   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2025-09-08T04:09:27,074     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2025-09-08T04:09:27,074         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:27,081   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T04:09:27,081   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:09:27,081     262 |   if (&(sid) == NULL)
2025-09-08T04:09:27,081         |              ^
2025-09-08T04:09:27,081   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2025-09-08T04:09:27,081     251 | UnitDefinition::setId (const std::string& sid)
2025-09-08T04:09:27,082         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:27,083   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T04:09:27,083   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:09:27,083     287 |   if (&(name) == NULL)
2025-09-08T04:09:27,083         |               ^
2025-09-08T04:09:27,083   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2025-09-08T04:09:27,083     282 | UnitDefinition::setName (const std::string& name)
2025-09-08T04:09:27,083         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:27,134   ./base/sbml/UnitDefinition.cpp: At global scope:
2025-09-08T04:09:27,134   ./base/sbml/UnitDefinition.cpp:1780:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:09:27,134    1780 | struct IdEqUD : public unary_function<SBase*, bool>
2025-09-08T04:09:27,134         |                        ^~~~~~~~~~~~~~
2025-09-08T04:09:27,134   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:09:27,134     117 |     struct unary_function
2025-09-08T04:09:27,134         |            ^~~~~~~~~~~~~~
2025-09-08T04:09:27,138   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T04:09:27,138   ./base/sbml/UnitDefinition.cpp:1805:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:09:27,138    1805 |   if (&(sid) == NULL)
2025-09-08T04:09:27,138         |              ^
2025-09-08T04:09:27,138   ./base/sbml/UnitDefinition.cpp:1801:48: note: ‘sid’ declared here
2025-09-08T04:09:27,139    1801 | ListOfUnitDefinitions::get (const std::string& sid) const
2025-09-08T04:09:27,139         |                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:27,143   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T04:09:27,143   ./base/sbml/UnitDefinition.cpp:1847:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:09:27,143    1847 |   if (&(sid) != NULL)
2025-09-08T04:09:27,143         |              ^
2025-09-08T04:09:27,144   ./base/sbml/UnitDefinition.cpp:1842:51: note: ‘sid’ declared here
2025-09-08T04:09:27,144    1842 | ListOfUnitDefinitions::remove (const std::string& sid)
2025-09-08T04:09:27,144         |                                ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:27,149   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2025-09-08T04:09:27,149   ./base/sbml/UnitDefinition.cpp:1925:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:27,149    1925 |   catch (SBMLConstructorException)
2025-09-08T04:09:27,150         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:27,151   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2025-09-08T04:09:27,151   ./base/sbml/UnitDefinition.cpp:1941:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2025-09-08T04:09:27,151    1941 |   catch (SBMLConstructorException)
2025-09-08T04:09:27,151         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:27,676   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2025-09-08T04:09:27,676   ./base/sbml/UnitDefinition.cpp:1805:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:27,677    1805 |   if (&(sid) == NULL)
2025-09-08T04:09:27,677         |   ^~
2025-09-08T04:09:27,680   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2025-09-08T04:09:27,680   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:27,680     123 |   if (&rhs == NULL)
2025-09-08T04:09:27,680         |   ^~
2025-09-08T04:09:27,683   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2025-09-08T04:09:27,683   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:27,683     262 |   if (&(sid) == NULL)
2025-09-08T04:09:27,683         |   ^~
2025-09-08T04:09:27,684   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2025-09-08T04:09:27,684   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:27,684     287 |   if (&(name) == NULL)
2025-09-08T04:09:27,684         |   ^~
2025-09-08T04:09:27,694   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2025-09-08T04:09:27,694   ./base/sbml/UnitDefinition.cpp:1847:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:27,694    1847 |   if (&(sid) != NULL)
2025-09-08T04:09:27,694         |   ^~
2025-09-08T04:09:27,697   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2025-09-08T04:09:27,697   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:27,697     104 |   if (&orig == NULL)
2025-09-08T04:09:27,697         |   ^~
2025-09-08T04:09:34,158   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T04:09:34,158   ./base/sbml/annotation/CVTerm.cpp:131:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:09:34,158     131 |   if (&orig == NULL)
2025-09-08T04:09:34,158         |             ^
2025-09-08T04:09:34,158   ./base/sbml/annotation/CVTerm.cpp:129:30: note: ‘orig’ declared here
2025-09-08T04:09:34,158     129 | CVTerm::CVTerm(const CVTerm& orig)
2025-09-08T04:09:34,158         |                ~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:34,159   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T04:09:34,159   ./base/sbml/annotation/CVTerm.cpp:151:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:09:34,160     151 |   if (&rhs == NULL)
2025-09-08T04:09:34,160         |            ^
2025-09-08T04:09:34,160   ./base/sbml/annotation/CVTerm.cpp:149:33: note: ‘rhs’ declared here
2025-09-08T04:09:34,160     149 | CVTerm::operator=(const CVTerm& rhs)
2025-09-08T04:09:34,160         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T04:09:34,163   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T04:09:34,163   ./base/sbml/annotation/CVTerm.cpp:257:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T04:09:34,163     257 |   if (&qualifier == NULL)
2025-09-08T04:09:34,163         |                  ^
2025-09-08T04:09:34,163   ./base/sbml/annotation/CVTerm.cpp:254:50: note: ‘qualifier’ declared here
2025-09-08T04:09:34,164     254 | CVTerm::setModelQualifierType(const std::string& qualifier)
2025-09-08T04:09:34,164         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:09:34,164   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T04:09:34,164   ./base/sbml/annotation/CVTerm.cpp:274:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2025-09-08T04:09:34,164     274 |   if (&qualifier == NULL)
2025-09-08T04:09:34,164         |                  ^
2025-09-08T04:09:34,164   ./base/sbml/annotation/CVTerm.cpp:271:55: note: ‘qualifier’ declared here
2025-09-08T04:09:34,164     271 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2025-09-08T04:09:34,164         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:09:34,166   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T04:09:34,166   ./base/sbml/annotation/CVTerm.cpp:394:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2025-09-08T04:09:34,166     394 |   if (&resource == NULL || resource.empty())
2025-09-08T04:09:34,166         |                 ^
2025-09-08T04:09:34,166   ./base/sbml/annotation/CVTerm.cpp:392:40: note: ‘resource’ declared here
2025-09-08T04:09:34,166     392 | CVTerm::addResource(const std::string& resource)
2025-09-08T04:09:34,166         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:09:34,517   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2025-09-08T04:09:34,517   ./base/sbml/annotation/CVTerm.cpp:257:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:34,517     257 |   if (&qualifier == NULL)
2025-09-08T04:09:34,517         |   ^~
2025-09-08T04:09:34,517   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2025-09-08T04:09:34,517   ./base/sbml/annotation/CVTerm.cpp:274:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:34,517     274 |   if (&qualifier == NULL)
2025-09-08T04:09:34,517         |   ^~
2025-09-08T04:09:34,520   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2025-09-08T04:09:34,520   ./base/sbml/annotation/CVTerm.cpp:131:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:34,520     131 |   if (&orig == NULL)
2025-09-08T04:09:34,520         |   ^~
2025-09-08T04:09:34,521   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2025-09-08T04:09:34,521   ./base/sbml/annotation/CVTerm.cpp:151:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:34,521     151 |   if (&rhs == NULL)
2025-09-08T04:09:34,521         |   ^~
2025-09-08T04:09:34,521   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2025-09-08T04:09:34,521   ./base/sbml/annotation/CVTerm.cpp:394:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:34,521     394 |   if (&resource == NULL || resource.empty())
2025-09-08T04:09:34,521         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:37,251   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T04:09:37,251   ./base/sbml/annotation/Date.cpp:75:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T04:09:37,252      75 |   if (&(date) == NULL)
2025-09-08T04:09:37,252         |               ^
2025-09-08T04:09:37,252   ./base/sbml/annotation/Date.cpp:72:32: note: ‘date’ declared here
2025-09-08T04:09:37,252      72 | Date::Date (const std::string& date) :
2025-09-08T04:09:37,252         |             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:37,252   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T04:09:37,253   ./base/sbml/annotation/Date.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:09:37,253      92 |   if (&orig == NULL)
2025-09-08T04:09:37,253         |             ^
2025-09-08T04:09:37,253   ./base/sbml/annotation/Date.cpp:90:24: note: ‘orig’ declared here
2025-09-08T04:09:37,253      90 | Date::Date(const Date& orig)
2025-09-08T04:09:37,253         |            ~~~~~~~~~~~~^~~~
2025-09-08T04:09:37,254   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T04:09:37,255   ./base/sbml/annotation/Date.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:09:37,255     120 |   if (&rhs == NULL)
2025-09-08T04:09:37,255         |            ^
2025-09-08T04:09:37,255   ./base/sbml/annotation/Date.cpp:118:35: note: ‘rhs’ declared here
2025-09-08T04:09:37,255     118 | Date& Date::operator=(const Date& rhs)
2025-09-08T04:09:37,255         |                       ~~~~~~~~~~~~^~~
2025-09-08T04:09:37,260   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T04:09:37,260   ./base/sbml/annotation/Date.cpp:390:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2025-09-08T04:09:37,260     390 |   if (&(date) == NULL)
2025-09-08T04:09:37,260         |               ^
2025-09-08T04:09:37,260   ./base/sbml/annotation/Date.cpp:384:43: note: ‘date’ declared here
2025-09-08T04:09:37,260     384 | Date::setDateAsString (const std::string& date)
2025-09-08T04:09:37,260         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:37,625   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2025-09-08T04:09:37,625   ./base/sbml/annotation/Date.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:37,625      92 |   if (&orig == NULL)
2025-09-08T04:09:37,625         |   ^~
2025-09-08T04:09:37,625   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2025-09-08T04:09:37,626   ./base/sbml/annotation/Date.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:37,626     120 |   if (&rhs == NULL)
2025-09-08T04:09:37,626         |   ^~
2025-09-08T04:09:37,627   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2025-09-08T04:09:37,627   ./base/sbml/annotation/Date.cpp:75:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:37,627      75 |   if (&(date) == NULL)
2025-09-08T04:09:37,627         |   ^~
2025-09-08T04:09:37,629   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2025-09-08T04:09:37,630   ./base/sbml/annotation/Date.cpp:390:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:37,630     390 |   if (&(date) == NULL)
2025-09-08T04:09:37,630         |   ^~
2025-09-08T04:09:37,815   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2025-09-08T04:09:37,815   ./base/sbml/annotation/Date.cpp:444:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T04:09:37,815     444 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T04:09:37,815         |                        ^~
2025-09-08T04:09:37,815   ./base/sbml/annotation/Date.cpp:444:20: note: directive argument in the range [10, 4294967295]
2025-09-08T04:09:37,815     444 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T04:09:37,816         |                    ^~~~~~~~
2025-09-08T04:09:37,816   ./base/sbml/annotation/Date.cpp:444:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2025-09-08T04:09:37,816     444 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2025-09-08T04:09:37,816         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:37,816   ./base/sbml/annotation/Date.cpp:450:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T04:09:37,816     450 |     sprintf(cdate, "%uT", mDay);
2025-09-08T04:09:37,816         |                       ^
2025-09-08T04:09:37,816   ./base/sbml/annotation/Date.cpp:450:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T04:09:37,816     450 |     sprintf(cdate, "%uT", mDay);
2025-09-08T04:09:37,817         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:37,817   ./base/sbml/annotation/Date.cpp:456:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T04:09:37,817     456 |     sprintf(cdate, "%u:", mHour);
2025-09-08T04:09:37,817         |                       ^
2025-09-08T04:09:37,817   ./base/sbml/annotation/Date.cpp:456:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T04:09:37,817     456 |     sprintf(cdate, "%u:", mHour);
2025-09-08T04:09:37,817         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:37,817   ./base/sbml/annotation/Date.cpp:462:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T04:09:37,817     462 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T04:09:37,817         |                       ^
2025-09-08T04:09:37,818   ./base/sbml/annotation/Date.cpp:462:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T04:09:37,818     462 |     sprintf(cdate, "%u:", mMinute);
2025-09-08T04:09:37,818         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:37,818   ./base/sbml/annotation/Date.cpp:468:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T04:09:37,818     468 |     sprintf(cdate, "%u", mSecond);
2025-09-08T04:09:37,818         |                       ^
2025-09-08T04:09:37,818   ./base/sbml/annotation/Date.cpp:468:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T04:09:37,818     468 |     sprintf(cdate, "%u", mSecond);
2025-09-08T04:09:37,818         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:37,818   ./base/sbml/annotation/Date.cpp:487:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2025-09-08T04:09:37,819     487 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T04:09:37,819         |                         ^
2025-09-08T04:09:37,819   ./base/sbml/annotation/Date.cpp:487:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2025-09-08T04:09:37,819     487 |       sprintf(cdate, "%u:", mHoursOffset);
2025-09-08T04:09:37,819         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:37,819   ./base/sbml/annotation/Date.cpp:493:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2025-09-08T04:09:37,819     493 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T04:09:37,819         |                         ^
2025-09-08T04:09:37,819   ./base/sbml/annotation/Date.cpp:493:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2025-09-08T04:09:37,819     493 |       sprintf(cdate, "%u", mMinutesOffset);
2025-09-08T04:09:37,819         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:09:40,428   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T04:09:40,428   ./base/sbml/annotation/ModelCreator.cpp:132:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:09:40,428     132 |   if (&orig == NULL)
2025-09-08T04:09:40,428         |             ^
2025-09-08T04:09:40,428   ./base/sbml/annotation/ModelCreator.cpp:130:48: note: ‘orig’ declared here
2025-09-08T04:09:40,428     130 | ModelCreator::ModelCreator(const ModelCreator& orig)
2025-09-08T04:09:40,428         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:40,430   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T04:09:40,430   ./base/sbml/annotation/ModelCreator.cpp:159:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:09:40,430     159 |   if (&rhs == NULL)
2025-09-08T04:09:40,430         |            ^
2025-09-08T04:09:40,430   ./base/sbml/annotation/ModelCreator.cpp:157:59: note: ‘rhs’ declared here
2025-09-08T04:09:40,430     157 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2025-09-08T04:09:40,430         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:40,432   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T04:09:40,432   ./base/sbml/annotation/ModelCreator.cpp:233:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:09:40,432     233 |   if (&(name) == NULL)
2025-09-08T04:09:40,433         |               ^
2025-09-08T04:09:40,433   ./base/sbml/annotation/ModelCreator.cpp:231:48: note: ‘name’ declared here
2025-09-08T04:09:40,433     231 | ModelCreator::setFamilyName(const std::string& name)
2025-09-08T04:09:40,433         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:40,433   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T04:09:40,433   ./base/sbml/annotation/ModelCreator.cpp:252:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:09:40,433     252 |   if (&(name) == NULL)
2025-09-08T04:09:40,433         |               ^
2025-09-08T04:09:40,434   ./base/sbml/annotation/ModelCreator.cpp:250:47: note: ‘name’ declared here
2025-09-08T04:09:40,434     250 | ModelCreator::setGivenName(const std::string& name)
2025-09-08T04:09:40,434         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:40,434   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T04:09:40,434   ./base/sbml/annotation/ModelCreator.cpp:271:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2025-09-08T04:09:40,434     271 |   if (&(email) == NULL)
2025-09-08T04:09:40,434         |                ^
2025-09-08T04:09:40,434   ./base/sbml/annotation/ModelCreator.cpp:269:43: note: ‘email’ declared here
2025-09-08T04:09:40,434     269 | ModelCreator::setEmail(const std::string& email)
2025-09-08T04:09:40,434         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:09:40,435   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T04:09:40,435   ./base/sbml/annotation/ModelCreator.cpp:287:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2025-09-08T04:09:40,435     287 |   if (&(organization) == NULL)
2025-09-08T04:09:40,435         |                       ^
2025-09-08T04:09:40,435   ./base/sbml/annotation/ModelCreator.cpp:285:50: note: ‘organization’ declared here
2025-09-08T04:09:40,435     285 | ModelCreator::setOrganization(const std::string& organization)
2025-09-08T04:09:40,435         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T04:09:40,782   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2025-09-08T04:09:40,782   ./base/sbml/annotation/ModelCreator.cpp:233:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:40,782     233 |   if (&(name) == NULL)
2025-09-08T04:09:40,782         |   ^~
2025-09-08T04:09:40,782   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2025-09-08T04:09:40,782   ./base/sbml/annotation/ModelCreator.cpp:252:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:40,782     252 |   if (&(name) == NULL)
2025-09-08T04:09:40,782         |   ^~
2025-09-08T04:09:40,782   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2025-09-08T04:09:40,783   ./base/sbml/annotation/ModelCreator.cpp:271:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:40,783     271 |   if (&(email) == NULL)
2025-09-08T04:09:40,783         |   ^~
2025-09-08T04:09:40,783   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2025-09-08T04:09:40,783   ./base/sbml/annotation/ModelCreator.cpp:287:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:40,783     287 |   if (&(organization) == NULL)
2025-09-08T04:09:40,783         |   ^~
2025-09-08T04:09:40,788   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2025-09-08T04:09:40,789   ./base/sbml/annotation/ModelCreator.cpp:132:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:40,789     132 |   if (&orig == NULL)
2025-09-08T04:09:40,789         |   ^~
2025-09-08T04:09:40,789   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2025-09-08T04:09:40,789   ./base/sbml/annotation/ModelCreator.cpp:159:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:40,789     159 |   if (&rhs == NULL)
2025-09-08T04:09:40,789         |   ^~
2025-09-08T04:09:43,632   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T04:09:43,632   ./base/sbml/annotation/ModelHistory.cpp:87:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:09:43,632      87 |   if (&orig == NULL)
2025-09-08T04:09:43,632         |             ^
2025-09-08T04:09:43,633   ./base/sbml/annotation/ModelHistory.cpp:85:48: note: ‘orig’ declared here
2025-09-08T04:09:43,633      85 | ModelHistory::ModelHistory(const ModelHistory& orig)
2025-09-08T04:09:43,633         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:09:43,635   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T04:09:43,636   ./base/sbml/annotation/ModelHistory.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:09:43,636     123 |   if (&rhs == NULL)
2025-09-08T04:09:43,636         |            ^
2025-09-08T04:09:43,636   ./base/sbml/annotation/ModelHistory.cpp:121:45: note: ‘rhs’ declared here
2025-09-08T04:09:43,636     121 | ModelHistory::operator=(const ModelHistory& rhs)
2025-09-08T04:09:43,636         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:09:43,984   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2025-09-08T04:09:43,984   ./base/sbml/annotation/ModelHistory.cpp:87:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:43,984      87 |   if (&orig == NULL)
2025-09-08T04:09:43,984         |   ^~
2025-09-08T04:09:43,986   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2025-09-08T04:09:43,986   ./base/sbml/annotation/ModelHistory.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:43,986     123 |   if (&rhs == NULL)
2025-09-08T04:09:43,986         |   ^~
2025-09-08T04:09:47,097   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:09:47,097                    from ./base//sbml/Model.h:446,
2025-09-08T04:09:47,097                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2025-09-08T04:09:47,097   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:09:47,097      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:09:47,098         |                           ^~~~~~~~~~~~~~
2025-09-08T04:09:47,098   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:09:47,098                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:09:47,098                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:09:47,098                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:29:
2025-09-08T04:09:47,098   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:09:47,098     117 |     struct unary_function
2025-09-08T04:09:47,098         |            ^~~~~~~~~~~~~~
2025-09-08T04:09:47,302   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T04:09:47,302   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:09:47,302      67 |   if (&element == NULL || stream == NULL) return;
2025-09-08T04:09:47,303         |                ^
2025-09-08T04:09:47,303   ./base/sbml/annotation/RDFAnnotationParser.cpp:64:51: note: ‘element’ declared here
2025-09-08T04:09:47,303      64 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T04:09:47,303         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:09:47,809   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:09:47,809      67 |   if (&element == NULL || stream == NULL) return;
2025-09-08T04:09:47,809         |                ^
2025-09-08T04:10:09,224   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T04:10:09,224   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:10:09,224     110 |   if (&orig == NULL)
2025-09-08T04:10:09,225         |             ^
2025-09-08T04:10:09,225   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2025-09-08T04:10:09,225     108 |   (const ConversionOption& orig)
2025-09-08T04:10:09,225         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:10:09,226   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T04:10:09,226   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:10:09,226     128 |   if (&rhs == NULL)
2025-09-08T04:10:09,226         |            ^
2025-09-08T04:10:09,226   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2025-09-08T04:10:09,226     126 | ConversionOption::operator=(const ConversionOption& rhs)
2025-09-08T04:10:09,227         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:10:09,620   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2025-09-08T04:10:09,620   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:09,620     110 |   if (&orig == NULL)
2025-09-08T04:10:09,620         |   ^~
2025-09-08T04:10:09,620   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2025-09-08T04:10:09,620   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:09,620     128 |   if (&rhs == NULL)
2025-09-08T04:10:09,621         |   ^~
2025-09-08T04:10:13,697   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T04:10:13,698   ./base/sbml/conversion/ConversionProperties.cpp:56:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:10:13,698      56 |   if (&orig == NULL)
2025-09-08T04:10:13,698         |             ^
2025-09-08T04:10:13,698   ./base/sbml/conversion/ConversionProperties.cpp:53:72: note: ‘orig’ declared here
2025-09-08T04:10:13,698      53 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2025-09-08T04:10:13,698         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:10:13,736   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T04:10:13,736   ./base/sbml/conversion/ConversionProperties.cpp:79:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:10:13,736      79 |   if (&rhs == NULL)
2025-09-08T04:10:13,736         |            ^
2025-09-08T04:10:13,736   ./base/sbml/conversion/ConversionProperties.cpp:77:61: note: ‘rhs’ declared here
2025-09-08T04:10:13,736      77 | ConversionProperties::operator=(const ConversionProperties& rhs)
2025-09-08T04:10:13,737         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:10:13,748   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T04:10:13,748   ./base/sbml/conversion/ConversionProperties.cpp:231:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2025-09-08T04:10:13,748     231 |   if (&option == NULL) return;
2025-09-08T04:10:13,748         |               ^
2025-09-08T04:10:13,748   ./base/sbml/conversion/ConversionProperties.cpp:229:57: note: ‘option’ declared here
2025-09-08T04:10:13,748     229 | ConversionProperties::addOption(const ConversionOption &option)
2025-09-08T04:10:13,749         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:10:14,245   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2025-09-08T04:10:14,245   ./base/sbml/conversion/ConversionProperties.cpp:56:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:14,245      56 |   if (&orig == NULL)
2025-09-08T04:10:14,245         |   ^~
2025-09-08T04:10:14,246   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2025-09-08T04:10:14,246   ./base/sbml/conversion/ConversionProperties.cpp:79:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:14,246      79 |   if (&rhs == NULL)
2025-09-08T04:10:14,246         |   ^~
2025-09-08T04:10:14,246   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2025-09-08T04:10:14,246   ./base/sbml/conversion/ConversionProperties.cpp:231:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:14,246     231 |   if (&option == NULL) return;
2025-09-08T04:10:14,247         |   ^~
2025-09-08T04:10:19,605   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:19,605                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:19,605                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:19,605                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:19,605                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:19,605                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2025-09-08T04:10:19,605                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2025-09-08T04:10:19,606   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:19,606      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:19,606         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:19,607   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:10:19,607                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:10:19,607                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:10:19,607                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2025-09-08T04:10:19,607   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:19,607     117 |     struct unary_function
2025-09-08T04:10:19,607         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:23,184   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:23,185                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:23,185                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:23,185                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:23,185                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:23,185                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2025-09-08T04:10:23,185   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:23,185      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:23,186         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:23,186   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:10:23,186                    from ./base//sbml/conversion/SBMLConverter.h:52:
2025-09-08T04:10:23,186   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:23,186     117 |     struct unary_function
2025-09-08T04:10:23,186         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:23,443   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T04:10:23,443   ./base/sbml/conversion/SBMLConverter.cpp:67:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:10:23,443      67 |   if (&orig == NULL)
2025-09-08T04:10:23,443         |             ^
2025-09-08T04:10:23,444   ./base/sbml/conversion/SBMLConverter.cpp:62:51: note: ‘orig’ declared here
2025-09-08T04:10:23,444      62 | SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2025-09-08T04:10:23,444         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:10:23,445   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T04:10:23,446   ./base/sbml/conversion/SBMLConverter.cpp:103:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:10:23,446     103 |   if (&rhs == NULL)
2025-09-08T04:10:23,446         |            ^
2025-09-08T04:10:23,446   ./base/sbml/conversion/SBMLConverter.cpp:101:47: note: ‘rhs’ declared here
2025-09-08T04:10:23,446     101 | SBMLConverter::operator=(const SBMLConverter& rhs)
2025-09-08T04:10:23,446         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:10:23,861   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2025-09-08T04:10:23,862   ./base/sbml/conversion/SBMLConverter.cpp:67:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:23,862      67 |   if (&orig == NULL)
2025-09-08T04:10:23,862         |   ^~
2025-09-08T04:10:23,862   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2025-09-08T04:10:23,862   ./base/sbml/conversion/SBMLConverter.cpp:103:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:23,862     103 |   if (&rhs == NULL)
2025-09-08T04:10:23,863         |   ^~
2025-09-08T04:10:27,030   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:27,030                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:27,030                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:27,031                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:27,031                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:27,031                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2025-09-08T04:10:27,031                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2025-09-08T04:10:27,031   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:27,031      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:27,031         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:27,031   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T04:10:27,031                    from /usr/include/c++/14/vector:68,
2025-09-08T04:10:27,032                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2025-09-08T04:10:27,032   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:27,032     117 |     struct unary_function
2025-09-08T04:10:27,032         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:30,943   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:30,944                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:30,944                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:30,944                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:30,944                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:30,944                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2025-09-08T04:10:30,944                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2025-09-08T04:10:30,944   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:30,944      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:30,945         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:30,945   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:10:30,945                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:10:30,945                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:10:30,945                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2025-09-08T04:10:30,945   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:30,945     117 |     struct unary_function
2025-09-08T04:10:30,945         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:31,202   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:31,202   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:10:31,202     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T04:10:31,202         |              ^
2025-09-08T04:10:31,203   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:110:80: note: ‘props’ declared here
2025-09-08T04:10:31,203     110 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:10:31,203         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:10:31,208   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2025-09-08T04:10:31,209   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:216:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2025-09-08T04:10:31,209     216 |           ->isSetMath(), &idsToSkip)
2025-09-08T04:10:31,209         |                          ^~~~~~~~~~
2025-09-08T04:10:31,209   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:153:10: note: ‘idsToSkip’ declared here
2025-09-08T04:10:31,209     153 |   IdList idsToSkip;
2025-09-08T04:10:31,209         |          ^~~~~~~~~
2025-09-08T04:10:31,638   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:31,639   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:31,639     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2025-09-08T04:10:31,639         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:10:35,259   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:35,259                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:35,259                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:35,259                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:35,259                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:35,260                    from ./base//sbml/conversion/SBMLIdConverter.h:78,
2025-09-08T04:10:35,260                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2025-09-08T04:10:35,260   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:35,260      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:35,260         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:35,260   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:10:35,260                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:10:35,260                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:10:35,260                    from ./base//sbml/conversion/SBMLIdConverter.h:77:
2025-09-08T04:10:35,260   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:35,261     117 |     struct unary_function
2025-09-08T04:10:35,261         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:35,530   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:35,531   ./base/sbml/conversion/SBMLIdConverter.cpp:115:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:10:35,531     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T04:10:35,531         |              ^
2025-09-08T04:10:35,531   ./base/sbml/conversion/SBMLIdConverter.cpp:113:64: note: ‘props’ declared here
2025-09-08T04:10:35,531     113 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:10:35,531         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:10:36,089   ./base/sbml/conversion/SBMLIdConverter.cpp:115:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:36,089     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2025-09-08T04:10:36,089         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:10:40,602   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:40,602                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:40,602                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:40,602                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:40,602                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:40,602                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:56,
2025-09-08T04:10:40,603                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2025-09-08T04:10:40,603   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:40,603      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:40,603         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:40,604   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:10:40,604                    from ./base//sbml/conversion/SBMLConverter.h:52:
2025-09-08T04:10:40,604   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:40,604     117 |     struct unary_function
2025-09-08T04:10:40,604         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:40,870   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T04:10:40,870   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:10:40,870      91 |   if (&rhs == NULL)
2025-09-08T04:10:40,870         |            ^
2025-09-08T04:10:40,871   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2025-09-08T04:10:40,871      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2025-09-08T04:10:40,871         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:10:40,874   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:40,874   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:10:40,874     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T04:10:40,874         |              ^
2025-09-08T04:10:40,874   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:132:72: note: ‘props’ declared here
2025-09-08T04:10:40,875     132 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:10:40,875         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:10:41,304   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2025-09-08T04:10:41,304   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:41,304      91 |   if (&rhs == NULL)
2025-09-08T04:10:41,304         |   ^~
2025-09-08T04:10:41,305   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:41,305   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:41,305     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2025-09-08T04:10:41,305         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:10:44,892   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:44,892                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:44,892                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:44,892                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:44,892                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:44,892                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:89,
2025-09-08T04:10:44,892                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2025-09-08T04:10:44,892   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:44,893      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:44,893         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:44,893   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:10:44,893                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:10:44,893                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:10:44,893                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:88:
2025-09-08T04:10:44,893   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:44,893     117 |     struct unary_function
2025-09-08T04:10:44,893         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:45,160   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:45,160   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:10:45,161     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T04:10:45,161         |              ^
2025-09-08T04:10:45,161   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:107:79: note: ‘props’ declared here
2025-09-08T04:10:45,161     107 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:10:45,161         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:10:45,577   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:45,577     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2025-09-08T04:10:45,577         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:10:48,710   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:48,710                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:48,710                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:48,710                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:48,711                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:48,711                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:73,
2025-09-08T04:10:48,711                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2025-09-08T04:10:48,711   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:48,711      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:48,711         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:48,712   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:10:48,712                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:10:48,712                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:10:48,712                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:72:
2025-09-08T04:10:48,712   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:48,712     117 |     struct unary_function
2025-09-08T04:10:48,712         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:49,037   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T04:10:49,037   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:10:49,037      89 |   if (&rhs == NULL)
2025-09-08T04:10:49,037         |            ^
2025-09-08T04:10:49,037   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2025-09-08T04:10:49,038      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2025-09-08T04:10:49,038         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:10:49,041   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:49,042   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:10:49,042     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T04:10:49,042         |              ^
2025-09-08T04:10:49,042   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:135:74: note: ‘props’ declared here
2025-09-08T04:10:49,042     135 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:10:49,042         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:10:49,530   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2025-09-08T04:10:49,530   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:49,530      89 |   if (&rhs == NULL)
2025-09-08T04:10:49,530         |   ^~
2025-09-08T04:10:49,531   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:49,531   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:49,531     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2025-09-08T04:10:49,531         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:10:54,384   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:54,384                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:54,384                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:54,384                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:54,384                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:54,384                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:65,
2025-09-08T04:10:54,384                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2025-09-08T04:10:54,384   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:54,385      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:54,385         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:54,385   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:10:54,385                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:10:54,385                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:10:54,385                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:64:
2025-09-08T04:10:54,385   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:54,385     117 |     struct unary_function
2025-09-08T04:10:54,385         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:54,653   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:54,653   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:10:54,653     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T04:10:54,654         |              ^
2025-09-08T04:10:54,654   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:114:76: note: ‘props’ declared here
2025-09-08T04:10:54,654     114 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:10:54,654         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:10:55,118   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:55,119     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2025-09-08T04:10:55,119         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:10:58,660   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:10:58,661                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:10:58,661                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:10:58,661                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:10:58,661                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:10:58,661                    from ./base//sbml/conversion/SBMLReactionConverter.h:59,
2025-09-08T04:10:58,661                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2025-09-08T04:10:58,661   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:10:58,661      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:10:58,662         |                           ^~~~~~~~~~~~~~
2025-09-08T04:10:58,662   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:10:58,662                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:10:58,662                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:10:58,662                    from ./base//sbml/conversion/SBMLReactionConverter.h:58:
2025-09-08T04:10:58,662   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:10:58,662     117 |     struct unary_function
2025-09-08T04:10:58,662         |            ^~~~~~~~~~~~~~
2025-09-08T04:10:58,942   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:10:58,942   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:10:58,943     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T04:10:58,943         |              ^
2025-09-08T04:10:58,943   ./base/sbml/conversion/SBMLReactionConverter.cpp:116:70: note: ‘props’ declared here
2025-09-08T04:10:58,943     116 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:10:58,943         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:10:59,456   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:10:59,456     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2025-09-08T04:10:59,456         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:11:03,994   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:03,994                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:03,994                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:03,995                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:11:03,995                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:11:03,995                    from ./base//sbml/conversion/SBMLRuleConverter.h:88,
2025-09-08T04:11:03,995                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2025-09-08T04:11:03,995   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:03,995      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:03,995         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:03,996   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:03,996                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:11:03,996                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:11:03,996                    from ./base//sbml/conversion/SBMLRuleConverter.h:87:
2025-09-08T04:11:03,996   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:03,996     117 |     struct unary_function
2025-09-08T04:11:03,997         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:04,270   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:11:04,271   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:11:04,271     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T04:11:04,271         |              ^
2025-09-08T04:11:04,271   ./base/sbml/conversion/SBMLRuleConverter.cpp:111:68: note: ‘props’ declared here
2025-09-08T04:11:04,271     111 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:11:04,271         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:11:05,134   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:05,134     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2025-09-08T04:11:05,134         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:11:12,891   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:12,891                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:12,891                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:12,891                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:11:12,892                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:11:12,892                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:61,
2025-09-08T04:11:12,892                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2025-09-08T04:11:12,892   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:12,892      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:12,892         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:12,892   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:12,892                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:11:12,892                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:11:12,893                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:60:
2025-09-08T04:11:12,893   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:12,893     117 |     struct unary_function
2025-09-08T04:11:12,893         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:13,171   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T04:11:13,172   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:11:13,172      86 |   if (&rhs == NULL)
2025-09-08T04:11:13,172         |            ^
2025-09-08T04:11:13,172   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2025-09-08T04:11:13,172      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2025-09-08T04:11:13,172         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:13,175   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:11:13,175   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:131:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:11:13,175     131 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T04:11:13,175         |              ^
2025-09-08T04:11:13,175   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:129:74: note: ‘props’ declared here
2025-09-08T04:11:13,175     129 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:11:13,175         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:11:13,594   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2025-09-08T04:11:13,594   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:13,594      86 |   if (&rhs == NULL)
2025-09-08T04:11:13,594         |   ^~
2025-09-08T04:11:13,594   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:11:13,595   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:131:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:13,595     131 |   if (&props == NULL || !props.hasOption("stripPackage"))
2025-09-08T04:11:13,595         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:11:17,141   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:17,141                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:17,141                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:17,141                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:11:17,141                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:11:17,141                    from ./base//sbml/conversion/SBMLUnitsConverter.h:71,
2025-09-08T04:11:17,141                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2025-09-08T04:11:17,141   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:17,142      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:17,142         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:17,142   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:17,143                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:11:17,143                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:11:17,143                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70:
2025-09-08T04:11:17,143   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:17,143     117 |     struct unary_function
2025-09-08T04:11:17,143         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:17,438   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T04:11:17,439   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:11:17,439      91 |   if (&rhs == NULL)
2025-09-08T04:11:17,439         |            ^
2025-09-08T04:11:17,439   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2025-09-08T04:11:17,439      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2025-09-08T04:11:17,439         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:17,443   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:11:17,443   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:11:17,443     136 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T04:11:17,443         |              ^
2025-09-08T04:11:17,443   ./base/sbml/conversion/SBMLUnitsConverter.cpp:134:67: note: ‘props’ declared here
2025-09-08T04:11:17,443     134 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:11:17,443         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:11:18,095   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2025-09-08T04:11:18,095   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:18,095      91 |   if (&rhs == NULL)
2025-09-08T04:11:18,096         |   ^~
2025-09-08T04:11:18,096   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:11:18,096   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:18,096     136 |   if (&props == NULL || !props.hasOption("units"))
2025-09-08T04:11:18,097         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:11:25,339   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:25,340                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:25,340                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:25,340                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:11:25,340                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:11:25,340                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T04:11:25,340                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2025-09-08T04:11:25,340   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:25,340      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:25,341         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:25,341   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:25,341                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:11:25,341                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:11:25,341                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:44,
2025-09-08T04:11:25,341                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2025-09-08T04:11:25,341   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:25,341     117 |     struct unary_function
2025-09-08T04:11:25,341         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:28,951   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:28,952                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:28,952                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:28,952                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2025-09-08T04:11:28,952                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2025-09-08T04:11:28,952   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:28,952      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:28,952         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:28,952   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:28,953                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:11:28,953                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:11:28,953                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53:
2025-09-08T04:11:28,953   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:28,953     117 |     struct unary_function
2025-09-08T04:11:28,953         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:29,224   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T04:11:29,224   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T04:11:29,224     119 |   if (&attributes == NULL) return;
2025-09-08T04:11:29,224         |                   ^
2025-09-08T04:11:29,225   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2025-09-08T04:11:29,225     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2025-09-08T04:11:29,225         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T04:11:29,225   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T04:11:29,225   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T04:11:29,225     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:29,225         |                   ^
2025-09-08T04:11:29,225   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2025-09-08T04:11:29,225     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T04:11:29,226         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T04:11:29,226   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T04:11:29,226     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:29,226         |                                                  ^
2025-09-08T04:11:29,226   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2025-09-08T04:11:29,226     133 |                                     const ExpectedAttributes& expectedAttributes)
2025-09-08T04:11:29,226         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T04:11:29,228   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2025-09-08T04:11:29,228   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:11:29,228     169 |   if (&stream == NULL) return;
2025-09-08T04:11:29,228         |               ^
2025-09-08T04:11:29,228   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2025-09-08T04:11:29,228     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2025-09-08T04:11:29,229         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:11:29,654   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:29,655     169 |   if (&stream == NULL) return;
2025-09-08T04:11:29,655         |   ^~
2025-09-08T04:11:29,658   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2025-09-08T04:11:29,658   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:29,658     119 |   if (&attributes == NULL) return;
2025-09-08T04:11:29,658         |   ^~
2025-09-08T04:11:29,658   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T04:11:29,659   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:29,659     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:29,659         |                   ^
2025-09-08T04:11:29,659   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:29,659     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:29,659         |                                                  ^
2025-09-08T04:11:33,177   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:33,178                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:33,178                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:33,178                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2025-09-08T04:11:33,178                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:59,
2025-09-08T04:11:33,178                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2025-09-08T04:11:33,178   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:33,178      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:33,178         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:33,179   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:33,179                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:11:33,179                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:11:33,179                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53:
2025-09-08T04:11:33,179   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:33,180     117 |     struct unary_function
2025-09-08T04:11:33,180         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:33,452   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T04:11:33,453   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T04:11:33,453      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:33,453         |                   ^
2025-09-08T04:11:33,453   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2025-09-08T04:11:33,453      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2025-09-08T04:11:33,453         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T04:11:33,454   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T04:11:33,454      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:33,454         |                                                  ^
2025-09-08T04:11:33,454   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2025-09-08T04:11:33,454      89 |                                           const ExpectedAttributes& expectedAttributes)
2025-09-08T04:11:33,454         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T04:11:33,861   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:33,861      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:33,861         |                   ^
2025-09-08T04:11:33,862   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:33,862      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:33,862         |                                                  ^
2025-09-08T04:11:36,822   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:36,822                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:36,822                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:36,823                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:11:36,823                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:11:36,823                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2025-09-08T04:11:36,823   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:36,823      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:36,823         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:36,823   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:36,823                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:11:36,823                    from ./base//sbml/SBMLError.h:457,
2025-09-08T04:11:36,824                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T04:11:36,824   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:36,824     117 |     struct unary_function
2025-09-08T04:11:36,824         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:37,127   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T04:11:37,127   ./base/sbml/extension/SBMLExtension.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T04:11:37,127     245 |   if (&extPoint == NULL) return NULL;
2025-09-08T04:11:37,127         |                 ^
2025-09-08T04:11:37,127   ./base/sbml/extension/SBMLExtension.cpp:243:65: note: ‘extPoint’ declared here
2025-09-08T04:11:37,128     243 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2025-09-08T04:11:37,128         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:11:37,131   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T04:11:37,131   ./base/sbml/extension/SBMLExtension.cpp:316:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:11:37,131     316 |   if(&uri == NULL) return false;
2025-09-08T04:11:37,131         |           ^
2025-09-08T04:11:37,131   ./base/sbml/extension/SBMLExtension.cpp:314:47: note: ‘uri’ declared here
2025-09-08T04:11:37,131     314 | SBMLExtension::isSupported(const std::string& uri) const
2025-09-08T04:11:37,131         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:37,653   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2025-09-08T04:11:37,653   ./base/sbml/extension/SBMLExtension.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:37,653     245 |   if (&extPoint == NULL) return NULL;
2025-09-08T04:11:37,653         |   ^~
2025-09-08T04:11:37,665   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2025-09-08T04:11:37,666   ./base/sbml/extension/SBMLExtension.cpp:316:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:37,666     316 |   if(&uri == NULL) return false;
2025-09-08T04:11:37,666         |   ^~
2025-09-08T04:11:43,718   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:43,718                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:43,718                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:43,718                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:11:43,718                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:11:43,718                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T04:11:43,719                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2025-09-08T04:11:43,719   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:43,719      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:43,719         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:43,720   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:43,720                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:11:43,720                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:11:43,720                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2025-09-08T04:11:43,720   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:43,720     117 |     struct unary_function
2025-09-08T04:11:43,720         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:47,346   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:47,346                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:47,346                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:47,347                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:11:47,347                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:11:47,347                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T04:11:47,347                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2025-09-08T04:11:47,347   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:47,347      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:47,347         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:47,347   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:47,348                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:11:47,348                    from ./base//sbml/SBMLError.h:457,
2025-09-08T04:11:47,348                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T04:11:47,348   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:47,348     117 |     struct unary_function
2025-09-08T04:11:47,348         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:47,652   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T04:11:47,652   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:11:47,652     103 |   if (&orig != NULL)
2025-09-08T04:11:47,653         |             ^
2025-09-08T04:11:47,653   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2025-09-08T04:11:47,653     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2025-09-08T04:11:47,653         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:11:47,741   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T04:11:47,741   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:11:47,741     221 |   if(&uri == NULL) return NULL;
2025-09-08T04:11:47,741         |           ^
2025-09-08T04:11:47,742   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2025-09-08T04:11:47,742     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2025-09-08T04:11:47,742         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:47,754   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T04:11:47,754   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T04:11:47,754     245 |   if (&extPoint != NULL)
2025-09-08T04:11:47,754         |                 ^
2025-09-08T04:11:47,755   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2025-09-08T04:11:47,755     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2025-09-08T04:11:47,755         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:11:47,758   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T04:11:47,758   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:11:47,758     272 |   if (&uri != NULL)
2025-09-08T04:11:47,758         |            ^
2025-09-08T04:11:47,758   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2025-09-08T04:11:47,758     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2025-09-08T04:11:47,758         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:47,760   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T04:11:47,760   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T04:11:47,760     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T04:11:47,760         |                ^
2025-09-08T04:11:47,760   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2025-09-08T04:11:47,760     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T04:11:47,760         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:11:47,761   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:11:47,761     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T04:11:47,761         |                                ^
2025-09-08T04:11:47,761   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2025-09-08T04:11:47,761     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2025-09-08T04:11:47,761         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:47,762   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T04:11:47,762   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2025-09-08T04:11:47,762     347 |   if (&extPoint == NULL) return 0;
2025-09-08T04:11:47,762         |                 ^
2025-09-08T04:11:47,762   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2025-09-08T04:11:47,762     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2025-09-08T04:11:47,762         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:11:47,764   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2025-09-08T04:11:47,764   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T04:11:47,764     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2025-09-08T04:11:47,764         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T04:11:47,764   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2025-09-08T04:11:48,491   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2025-09-08T04:11:48,491   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:48,491     272 |   if (&uri != NULL)
2025-09-08T04:11:48,491         |   ^~
2025-09-08T04:11:48,496   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2025-09-08T04:11:48,496   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:48,496     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T04:11:48,496         |                ^
2025-09-08T04:11:48,496   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:48,496     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2025-09-08T04:11:48,496         |                                ^
2025-09-08T04:11:48,497   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2025-09-08T04:11:48,497   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:48,497     245 |   if (&extPoint != NULL)
2025-09-08T04:11:48,497         |   ^~
2025-09-08T04:11:48,507   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2025-09-08T04:11:48,507   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:48,507     347 |   if (&extPoint == NULL) return 0;
2025-09-08T04:11:48,507         |   ^~
2025-09-08T04:11:48,507   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2025-09-08T04:11:48,507   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:48,507     221 |   if(&uri == NULL) return NULL;
2025-09-08T04:11:48,508         |   ^~
2025-09-08T04:11:48,517   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2025-09-08T04:11:48,517   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:48,517     103 |   if (&orig != NULL)
2025-09-08T04:11:48,517         |   ^~
2025-09-08T04:11:52,947   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T04:11:52,948   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T04:11:52,948      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T04:11:52,948         |            ^
2025-09-08T04:11:52,948   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:44: note: ‘lhs’ declared here
2025-09-08T04:11:52,948      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T04:11:52,948         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:52,948   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:11:52,949      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T04:11:52,949         |                            ^
2025-09-08T04:11:52,949   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:76: note: ‘rhs’ declared here
2025-09-08T04:11:52,949      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T04:11:52,949         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:52,950   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T04:11:52,951   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2025-09-08T04:11:52,951     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T04:11:52,951         |            ^
2025-09-08T04:11:52,951   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:43: note: ‘lhs’ declared here
2025-09-08T04:11:52,951     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T04:11:52,951         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:52,952   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:11:52,952     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T04:11:52,952         |                            ^
2025-09-08T04:11:52,952   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:75: note: ‘rhs’ declared here
2025-09-08T04:11:52,952     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2025-09-08T04:11:52,952         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:11:53,221   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T04:11:53,222   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:53,222      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T04:11:53,222         |            ^
2025-09-08T04:11:53,222   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:53,222      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T04:11:53,222         |                            ^
2025-09-08T04:11:53,224   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2025-09-08T04:11:53,224   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:53,224     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T04:11:53,224         |            ^
2025-09-08T04:11:53,224   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:53,224     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2025-09-08T04:11:53,224         |                            ^
2025-09-08T04:11:56,226   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:11:56,226                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:11:56,226                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:11:56,227                    from ./base//sbml/extension/SBasePlugin.h:68,
2025-09-08T04:11:56,227                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2025-09-08T04:11:56,227   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:11:56,227      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:11:56,227         |                           ^~~~~~~~~~~~~~
2025-09-08T04:11:56,228   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:11:56,228                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:11:56,228                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:11:56,228                    from ./base//sbml/extension/SBasePlugin.h:66:
2025-09-08T04:11:56,228   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:11:56,228     117 |     struct unary_function
2025-09-08T04:11:56,228         |            ^~~~~~~~~~~~~~
2025-09-08T04:11:56,544   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T04:11:56,544   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T04:11:56,545     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:56,545         |                   ^
2025-09-08T04:11:56,545   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2025-09-08T04:11:56,545     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2025-09-08T04:11:56,545         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T04:11:56,545   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T04:11:56,546     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:56,546         |                                                  ^
2025-09-08T04:11:56,546   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2025-09-08T04:11:56,546     576 |                              const ExpectedAttributes& expectedAttributes)
2025-09-08T04:11:56,546         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T04:11:56,549   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T04:11:56,549   ./base/sbml/extension/SBasePlugin.cpp:683:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:11:56,549     683 |   if(&element == NULL) return;
2025-09-08T04:11:56,549         |               ^
2025-09-08T04:11:56,550   ./base/sbml/extension/SBasePlugin.cpp:678:51: note: ‘element’ declared here
2025-09-08T04:11:56,550     678 | SBasePlugin::logUnknownElement(const std::string &element,
2025-09-08T04:11:56,550         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:11:56,556   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T04:11:56,556   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T04:11:56,557     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:11:56,557         |                  ^
2025-09-08T04:11:56,557   ./base/sbml/extension/SBasePlugin.cpp:710:53: note: ‘attribute’ declared here
2025-09-08T04:11:56,557     710 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2025-09-08T04:11:56,557         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:11:56,557   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:11:56,557     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:11:56,557         |                                      ^
2025-09-08T04:11:56,557   ./base/sbml/extension/SBasePlugin.cpp:714:53: note: ‘element’ declared here
2025-09-08T04:11:56,558     714 |                                  const std::string& element)
2025-09-08T04:11:56,558         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:11:56,563   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T04:11:56,563   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T04:11:56,563     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:11:56,563         |                  ^
2025-09-08T04:11:56,564   ./base/sbml/extension/SBasePlugin.cpp:744:48: note: ‘attribute’ declared here
2025-09-08T04:11:56,564     744 | SBasePlugin::logEmptyString(const std::string &attribute,
2025-09-08T04:11:56,564         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:11:56,564   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:11:56,564     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:11:56,564         |                                      ^
2025-09-08T04:11:56,564   ./base/sbml/extension/SBasePlugin.cpp:748:56: note: ‘element’ declared here
2025-09-08T04:11:56,565     748 |                                     const std::string& element)
2025-09-08T04:11:56,565         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:11:57,038   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2025-09-08T04:11:57,038   ./base/sbml/extension/SBasePlugin.cpp:683:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:57,038     683 |   if(&element == NULL) return;
2025-09-08T04:11:57,038         |   ^~
2025-09-08T04:11:57,039   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T04:11:57,039   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:57,039     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:11:57,039         |                  ^
2025-09-08T04:11:57,040   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:57,040     716 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:11:57,040         |                                      ^
2025-09-08T04:11:57,041   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2025-09-08T04:11:57,041   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:57,041     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:11:57,041         |                  ^
2025-09-08T04:11:57,041   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:57,041     751 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:11:57,041         |                                      ^
2025-09-08T04:11:57,043   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T04:11:57,044   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:57,044     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:57,044         |                   ^
2025-09-08T04:11:57,044   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:11:57,044     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:11:57,044         |                                                  ^
2025-09-08T04:12:01,518   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:12:01,519                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:12:01,519                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:12:01,519                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:12:01,519                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2025-09-08T04:12:01,519   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:12:01,519      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:12:01,519         |                           ^~~~~~~~~~~~~~
2025-09-08T04:12:01,520   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:12:01,520                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:12:01,520                    from ./base//sbml/SBMLError.h:457,
2025-09-08T04:12:01,520                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T04:12:01,520   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:12:01,520     117 |     struct unary_function
2025-09-08T04:12:01,521         |            ^~~~~~~~~~~~~~
2025-09-08T04:12:01,780   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2025-09-08T04:12:01,780   ./base/sbml/extension/SBasePluginCreatorBase.cpp:147:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:12:01,780     147 |   if (&uri == NULL) return false;
2025-09-08T04:12:01,781         |            ^
2025-09-08T04:12:01,781   ./base/sbml/extension/SBasePluginCreatorBase.cpp:145:56: note: ‘uri’ declared here
2025-09-08T04:12:01,781     145 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2025-09-08T04:12:01,781         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:12:02,194   ./base/sbml/extension/SBasePluginCreatorBase.cpp:147:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:02,195     147 |   if (&uri == NULL) return false;
2025-09-08T04:12:02,195         |   ^~
2025-09-08T04:12:05,646   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:12:05,646                    from ./base//sbml/Model.h:446,
2025-09-08T04:12:05,646                    from ./base/sbml/math/ASTNode.cpp:44:
2025-09-08T04:12:05,647   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:12:05,647      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:12:05,647         |                           ^~~~~~~~~~~~~~
2025-09-08T04:12:05,648   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:12:05,648                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:12:05,648                    from ./base//sbml/math/ASTNode.h:164,
2025-09-08T04:12:05,648                    from ./base/sbml/math/ASTNode.cpp:41:
2025-09-08T04:12:05,648   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:12:05,648     117 |     struct unary_function
2025-09-08T04:12:05,648         |            ^~~~~~~~~~~~~~
2025-09-08T04:12:14,806   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:12:14,806                    from ./base//sbml/Model.h:446,
2025-09-08T04:12:14,806                    from L3Parser.ypp:83:
2025-09-08T04:12:14,806   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:12:14,807      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:12:14,807         |                           ^~~~~~~~~~~~~~
2025-09-08T04:12:14,807   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:12:14,807                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:12:14,807                    from ./base//sbml/math/ASTNode.h:164,
2025-09-08T04:12:14,808                    from ./base//sbml/math/L3Parser.h:37,
2025-09-08T04:12:14,808                    from L3Parser.ypp:82:
2025-09-08T04:12:14,808   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:12:14,808     117 |     struct unary_function
2025-09-08T04:12:14,808         |            ^~~~~~~~~~~~~~
2025-09-08T04:12:24,075   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:12:24,076                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:12:24,076                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:12:24,076                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:12:24,076                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:12:24,076                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2025-09-08T04:12:24,076                    from ./base/sbml/math/L3ParserSettings.cpp:35:
2025-09-08T04:12:24,076   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:12:24,076      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:12:24,076         |                           ^~~~~~~~~~~~~~
2025-09-08T04:12:24,077   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T04:12:24,077                    from /usr/include/c++/14/vector:68,
2025-09-08T04:12:24,077                    from ./base//sbml/math/L3ParserSettings.h:316,
2025-09-08T04:12:24,077                    from ./base/sbml/math/L3ParserSettings.cpp:34:
2025-09-08T04:12:24,077   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:12:24,077     117 |     struct unary_function
2025-09-08T04:12:24,077         |            ^~~~~~~~~~~~~~
2025-09-08T04:12:27,357   ./base/sbml/math/MathML.cpp: In function ‘void logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T04:12:27,357   ./base/sbml/math/MathML.cpp:275:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:12:27,357     275 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,357         |                ^
2025-09-08T04:12:27,357   ./base/sbml/math/MathML.cpp:272:51: note: ‘element’ declared here
2025-09-08T04:12:27,358     272 | logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T04:12:27,358         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:12:27,358   ./base/sbml/math/MathML.cpp:275:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,358     275 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,358         |                                   ^
2025-09-08T04:12:27,358   ./base/sbml/math/MathML.cpp:272:27: note: ‘stream’ declared here
2025-09-08T04:12:27,359     272 | logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2025-09-08T04:12:27,359         |           ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,360   ./base/sbml/math/MathML.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T04:12:27,360   ./base/sbml/math/MathML.cpp:310:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2025-09-08T04:12:27,360     310 |   if (&s == NULL) return s;
2025-09-08T04:12:27,360         |          ^
2025-09-08T04:12:27,360   ./base/sbml/math/MathML.cpp:308:21: note: ‘s’ declared here
2025-09-08T04:12:27,360     308 | trim (const string& s)
2025-09-08T04:12:27,361         |       ~~~~~~~~~~~~~~^
2025-09-08T04:12:27,363   ./base/sbml/math/MathML.cpp: In function ‘void checkFunctionArgs(ASTNode&)’:
2025-09-08T04:12:27,364   ./base/sbml/math/MathML.cpp:337:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,364     337 |   if (&node == NULL) return;
2025-09-08T04:12:27,364         |             ^
2025-09-08T04:12:27,364   ./base/sbml/math/MathML.cpp:335:29: note: ‘node’ declared here
2025-09-08T04:12:27,364     335 | checkFunctionArgs (ASTNode& node)
2025-09-08T04:12:27,364         |                    ~~~~~~~~~^~~~
2025-09-08T04:12:27,366   ./base/sbml/math/MathML.cpp: In function ‘void reduceBinary(ASTNode&)’:
2025-09-08T04:12:27,366   ./base/sbml/math/MathML.cpp:369:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,367     369 |   if (&node == NULL) return;
2025-09-08T04:12:27,367         |             ^
2025-09-08T04:12:27,367   ./base/sbml/math/MathML.cpp:367:24: note: ‘node’ declared here
2025-09-08T04:12:27,367     367 | reduceBinary (ASTNode& node)
2025-09-08T04:12:27,367         |               ~~~~~~~~~^~~~
2025-09-08T04:12:27,368   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T04:12:27,368   ./base/sbml/math/MathML.cpp:388:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,368     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,368         |             ^
2025-09-08T04:12:27,369   ./base/sbml/math/MathML.cpp:386:21: note: ‘node’ declared here
2025-09-08T04:12:27,369     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,369         |            ~~~~~~~~~^~~~
2025-09-08T04:12:27,369   ./base/sbml/math/MathML.cpp:388:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:12:27,369     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,369         |                                 ^
2025-09-08T04:12:27,369   ./base/sbml/math/MathML.cpp:386:43: note: ‘element’ declared here
2025-09-08T04:12:27,370     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,370         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:12:27,370   ./base/sbml/math/MathML.cpp:388:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,370     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,370         |                                                    ^
2025-09-08T04:12:27,370   ./base/sbml/math/MathML.cpp:386:68: note: ‘stream’ declared here
2025-09-08T04:12:27,370     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,371         |                                                    ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,377   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCN(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T04:12:27,377   ./base/sbml/math/MathML.cpp:436:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,377     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,377         |             ^
2025-09-08T04:12:27,377   ./base/sbml/math/MathML.cpp:434:21: note: ‘node’ declared here
2025-09-08T04:12:27,377     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,377         |            ~~~~~~~~~^~~~
2025-09-08T04:12:27,378   ./base/sbml/math/MathML.cpp:436:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:12:27,378     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,378         |                                 ^
2025-09-08T04:12:27,378   ./base/sbml/math/MathML.cpp:434:43: note: ‘element’ declared here
2025-09-08T04:12:27,378     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,378         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:12:27,379   ./base/sbml/math/MathML.cpp:436:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,379     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,379         |                                                    ^
2025-09-08T04:12:27,379   ./base/sbml/math/MathML.cpp:434:68: note: ‘stream’ declared here
2025-09-08T04:12:27,379     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,379         |                                                    ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,391   ./base/sbml/math/MathML.cpp: In function ‘void setTypeOther(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T04:12:27,391   ./base/sbml/math/MathML.cpp:565:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,391     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,391         |             ^
2025-09-08T04:12:27,391   ./base/sbml/math/MathML.cpp:563:24: note: ‘node’ declared here
2025-09-08T04:12:27,391     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,391         |               ~~~~~~~~~^~~~
2025-09-08T04:12:27,392   ./base/sbml/math/MathML.cpp:565:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:12:27,392     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,392         |                                 ^
2025-09-08T04:12:27,392   ./base/sbml/math/MathML.cpp:563:46: note: ‘element’ declared here
2025-09-08T04:12:27,392     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,392         |                              ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:12:27,393   ./base/sbml/math/MathML.cpp:565:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,393     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,393         |                                                    ^
2025-09-08T04:12:27,393   ./base/sbml/math/MathML.cpp:563:71: note: ‘stream’ declared here
2025-09-08T04:12:27,393     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,393         |                                                       ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,394   ./base/sbml/math/MathML.cpp: In function ‘void setType(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T04:12:27,395   ./base/sbml/math/MathML.cpp:585:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,395     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,395         |             ^
2025-09-08T04:12:27,395   ./base/sbml/math/MathML.cpp:583:19: note: ‘node’ declared here
2025-09-08T04:12:27,395     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,395         |          ~~~~~~~~~^~~~
2025-09-08T04:12:27,396   ./base/sbml/math/MathML.cpp:585:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:12:27,396     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,396         |                                 ^
2025-09-08T04:12:27,396   ./base/sbml/math/MathML.cpp:583:41: note: ‘element’ declared here
2025-09-08T04:12:27,396     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,396         |                         ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:12:27,396   ./base/sbml/math/MathML.cpp:585:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,397     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,397         |                                                    ^
2025-09-08T04:12:27,397   ./base/sbml/math/MathML.cpp:583:66: note: ‘stream’ declared here
2025-09-08T04:12:27,397     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2025-09-08T04:12:27,397         |                                                  ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,400   ./base/sbml/math/MathML.cpp: In function ‘bool isMathMLNodeTag(const std::string&)’:
2025-09-08T04:12:27,400   ./base/sbml/math/MathML.cpp:621:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:12:27,401     621 |   if (&name == NULL) return false;
2025-09-08T04:12:27,401         |             ^
2025-09-08T04:12:27,401   ./base/sbml/math/MathML.cpp:619:31: note: ‘name’ declared here
2025-09-08T04:12:27,401     619 | isMathMLNodeTag(const string& name)
2025-09-08T04:12:27,401         |                 ~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,406   ./base/sbml/math/MathML.cpp: In function ‘void readMathML(ASTNode&, XMLInputStream&, std::string, bool)’:
2025-09-08T04:12:27,406   ./base/sbml/math/MathML.cpp:650:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,406     650 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,406         |             ^
2025-09-08T04:12:27,406   ./base/sbml/math/MathML.cpp:647:22: note: ‘node’ declared here
2025-09-08T04:12:27,407     647 | readMathML (ASTNode& node, XMLInputStream& stream, std::string reqd_prefix,
2025-09-08T04:12:27,407         |             ~~~~~~~~~^~~~
2025-09-08T04:12:27,407   ./base/sbml/math/MathML.cpp:650:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,407     650 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,407         |                                ^
2025-09-08T04:12:27,407   ./base/sbml/math/MathML.cpp:647:44: note: ‘stream’ declared here
2025-09-08T04:12:27,407     647 | readMathML (ASTNode& node, XMLInputStream& stream, std::string reqd_prefix,
2025-09-08T04:12:27,407         |                            ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,445   ./base/sbml/math/MathML.cpp: In function ‘void writeCI(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,445   ./base/sbml/math/MathML.cpp:1021:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,446    1021 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,446         |             ^
2025-09-08T04:12:27,446   ./base/sbml/math/MathML.cpp:1019:25: note: ‘node’ declared here
2025-09-08T04:12:27,446    1019 | writeCI (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,446         |          ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,446   ./base/sbml/math/MathML.cpp:1021:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,446    1021 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,446         |                                ^
2025-09-08T04:12:27,446   ./base/sbml/math/MathML.cpp:1019:48: note: ‘stream’ declared here
2025-09-08T04:12:27,447    1019 | writeCI (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,447         |                               ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,450   ./base/sbml/math/MathML.cpp: In function ‘void writeCN(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,451   ./base/sbml/math/MathML.cpp:1060:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,451    1060 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,451         |             ^
2025-09-08T04:12:27,451   ./base/sbml/math/MathML.cpp:1058:25: note: ‘node’ declared here
2025-09-08T04:12:27,451    1058 | writeCN (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns=NULL)
2025-09-08T04:12:27,451         |          ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,451   ./base/sbml/math/MathML.cpp:1060:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,451    1060 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,451         |                                ^
2025-09-08T04:12:27,451   ./base/sbml/math/MathML.cpp:1058:48: note: ‘stream’ declared here
2025-09-08T04:12:27,452    1058 | writeCN (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns=NULL)
2025-09-08T04:12:27,452         |                               ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,461   ./base/sbml/math/MathML.cpp: In function ‘void writeConstant(const ASTNode&, XMLOutputStream&)’:
2025-09-08T04:12:27,461   ./base/sbml/math/MathML.cpp:1136:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,461    1136 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,461         |             ^
2025-09-08T04:12:27,461   ./base/sbml/math/MathML.cpp:1134:31: note: ‘node’ declared here
2025-09-08T04:12:27,462    1134 | writeConstant (const ASTNode& node, XMLOutputStream& stream)
2025-09-08T04:12:27,462         |                ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,462   ./base/sbml/math/MathML.cpp:1136:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,462    1136 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,462         |                                ^
2025-09-08T04:12:27,462   ./base/sbml/math/MathML.cpp:1134:54: note: ‘stream’ declared here
2025-09-08T04:12:27,462    1134 | writeConstant (const ASTNode& node, XMLOutputStream& stream)
2025-09-08T04:12:27,462         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,463   ./base/sbml/math/MathML.cpp: In function ‘void writeCSymbol(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,463   ./base/sbml/math/MathML.cpp:1162:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,463    1162 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,463         |             ^
2025-09-08T04:12:27,463   ./base/sbml/math/MathML.cpp:1160:30: note: ‘node’ declared here
2025-09-08T04:12:27,463    1160 | writeCSymbol (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,464         |               ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,464   ./base/sbml/math/MathML.cpp:1162:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,464    1162 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,464         |                                ^
2025-09-08T04:12:27,464   ./base/sbml/math/MathML.cpp:1160:53: note: ‘stream’ declared here
2025-09-08T04:12:27,464    1160 | writeCSymbol (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,464         |                                    ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,468   ./base/sbml/math/MathML.cpp: In function ‘void writeDouble(const double&, XMLOutputStream&)’:
2025-09-08T04:12:27,468   ./base/sbml/math/MathML.cpp:1194:14: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:12:27,468    1194 |   if (&value == NULL || &stream == NULL) return;
2025-09-08T04:12:27,468         |              ^
2025-09-08T04:12:27,469   ./base/sbml/math/MathML.cpp:1192:28: note: ‘value’ declared here
2025-09-08T04:12:27,469    1192 | writeDouble (const double& value, XMLOutputStream& stream)
2025-09-08T04:12:27,469         |              ~~~~~~~~~~~~~~^~~~~
2025-09-08T04:12:27,469   ./base/sbml/math/MathML.cpp:1194:33: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,469    1194 |   if (&value == NULL || &stream == NULL) return;
2025-09-08T04:12:27,469         |                                 ^
2025-09-08T04:12:27,469   ./base/sbml/math/MathML.cpp:1192:52: note: ‘stream’ declared here
2025-09-08T04:12:27,469    1192 | writeDouble (const double& value, XMLOutputStream& stream)
2025-09-08T04:12:27,469         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,472   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const double&, long int, XMLOutputStream&)’:
2025-09-08T04:12:27,472   ./base/sbml/math/MathML.cpp:1232:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2025-09-08T04:12:27,472    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2025-09-08T04:12:27,472         |                 ^
2025-09-08T04:12:27,472   ./base/sbml/math/MathML.cpp:1228:36: note: ‘mantissa’ declared here
2025-09-08T04:12:27,472    1228 | writeENotation (  const double&    mantissa
2025-09-08T04:12:27,473         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:12:27,473   ./base/sbml/math/MathML.cpp:1232:36: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,473    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2025-09-08T04:12:27,473         |                                    ^
2025-09-08T04:12:27,473   ./base/sbml/math/MathML.cpp:1230:36: note: ‘stream’ declared here
2025-09-08T04:12:27,473    1230 |                 , XMLOutputStream& stream )
2025-09-08T04:12:27,473         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,475   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const std::string&, const std::string&, XMLOutputStream&)’:
2025-09-08T04:12:27,475   ./base/sbml/math/MathML.cpp:1267:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2025-09-08T04:12:27,475    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T04:12:27,475         |                 ^
2025-09-08T04:12:27,476   ./base/sbml/math/MathML.cpp:1263:36: note: ‘mantissa’ declared here
2025-09-08T04:12:27,476    1263 | writeENotation (  const string&    mantissa
2025-09-08T04:12:27,476         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:12:27,476   ./base/sbml/math/MathML.cpp:1267:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2025-09-08T04:12:27,476    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T04:12:27,476         |                                      ^
2025-09-08T04:12:27,476   ./base/sbml/math/MathML.cpp:1264:36: note: ‘exponent’ declared here
2025-09-08T04:12:27,476    1264 |                 , const string&    exponent
2025-09-08T04:12:27,476         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:12:27,476   ./base/sbml/math/MathML.cpp:1267:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,477    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T04:12:27,477         |                                                         ^
2025-09-08T04:12:27,477   ./base/sbml/math/MathML.cpp:1265:36: note: ‘stream’ declared here
2025-09-08T04:12:27,477    1265 |                 , XMLOutputStream& stream )
2025-09-08T04:12:27,477         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,479   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionLog(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,479   ./base/sbml/math/MathML.cpp:1286:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,479    1286 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,479         |             ^
2025-09-08T04:12:27,479   ./base/sbml/math/MathML.cpp:1284:34: note: ‘node’ declared here
2025-09-08T04:12:27,480    1284 | writeFunctionLog (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,480         |                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,480   ./base/sbml/math/MathML.cpp:1286:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,480    1286 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,480         |                                ^
2025-09-08T04:12:27,480   ./base/sbml/math/MathML.cpp:1284:57: note: ‘stream’ declared here
2025-09-08T04:12:27,480    1284 | writeFunctionLog (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,480         |                                        ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,481   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionRoot(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,481   ./base/sbml/math/MathML.cpp:1309:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,481    1309 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,481         |             ^
2025-09-08T04:12:27,481   ./base/sbml/math/MathML.cpp:1307:35: note: ‘node’ declared here
2025-09-08T04:12:27,481    1307 | writeFunctionRoot (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,482         |                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,482   ./base/sbml/math/MathML.cpp:1309:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,482    1309 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,482         |                                ^
2025-09-08T04:12:27,482   ./base/sbml/math/MathML.cpp:1307:58: note: ‘stream’ declared here
2025-09-08T04:12:27,482    1307 | writeFunctionRoot (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,482         |                                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,483   ./base/sbml/math/MathML.cpp: In function ‘void writeFunction(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,483   ./base/sbml/math/MathML.cpp:1336:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,483    1336 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,483         |             ^
2025-09-08T04:12:27,483   ./base/sbml/math/MathML.cpp:1334:31: note: ‘node’ declared here
2025-09-08T04:12:27,483    1334 | writeFunction (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,484         |                ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,484   ./base/sbml/math/MathML.cpp:1336:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,484    1336 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,484         |                                ^
2025-09-08T04:12:27,484   ./base/sbml/math/MathML.cpp:1334:54: note: ‘stream’ declared here
2025-09-08T04:12:27,484    1334 | writeFunction (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,484         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,487   ./base/sbml/math/MathML.cpp: In function ‘void writeLambda(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,487   ./base/sbml/math/MathML.cpp:1395:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,487    1395 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,487         |             ^
2025-09-08T04:12:27,488   ./base/sbml/math/MathML.cpp:1393:29: note: ‘node’ declared here
2025-09-08T04:12:27,488    1393 | writeLambda (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,488         |              ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,488   ./base/sbml/math/MathML.cpp:1395:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,488    1395 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,488         |                                ^
2025-09-08T04:12:27,488   ./base/sbml/math/MathML.cpp:1393:52: note: ‘stream’ declared here
2025-09-08T04:12:27,488    1393 | writeLambda (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,488         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,490   ./base/sbml/math/MathML.cpp: In function ‘void writeOperatorArgs(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,490   ./base/sbml/math/MathML.cpp:1435:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,490    1435 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,490         |             ^
2025-09-08T04:12:27,490   ./base/sbml/math/MathML.cpp:1433:35: note: ‘node’ declared here
2025-09-08T04:12:27,490    1433 | writeOperatorArgs (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,490         |                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,491   ./base/sbml/math/MathML.cpp:1435:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,491    1435 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,491         |                                ^
2025-09-08T04:12:27,491   ./base/sbml/math/MathML.cpp:1433:58: note: ‘stream’ declared here
2025-09-08T04:12:27,491    1433 | writeOperatorArgs (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,491         |                                         ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,493   ./base/sbml/math/MathML.cpp: In function ‘void writeOperator(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,493   ./base/sbml/math/MathML.cpp:1500:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,493    1500 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,493         |             ^
2025-09-08T04:12:27,493   ./base/sbml/math/MathML.cpp:1498:31: note: ‘node’ declared here
2025-09-08T04:12:27,493    1498 | writeOperator (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,493         |                ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,494   ./base/sbml/math/MathML.cpp:1500:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,494    1500 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,494         |                                ^
2025-09-08T04:12:27,494   ./base/sbml/math/MathML.cpp:1498:54: note: ‘stream’ declared here
2025-09-08T04:12:27,494    1498 | writeOperator (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,494         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,495   ./base/sbml/math/MathML.cpp: In function ‘void writePiecewise(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,496   ./base/sbml/math/MathML.cpp:1533:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,496    1533 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,496         |             ^
2025-09-08T04:12:27,496   ./base/sbml/math/MathML.cpp:1531:32: note: ‘node’ declared here
2025-09-08T04:12:27,496    1531 | writePiecewise (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,496         |                 ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,496   ./base/sbml/math/MathML.cpp:1533:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,496    1533 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,497         |                                ^
2025-09-08T04:12:27,497   ./base/sbml/math/MathML.cpp:1531:55: note: ‘stream’ declared here
2025-09-08T04:12:27,497    1531 | writePiecewise (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,497         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,499   ./base/sbml/math/MathML.cpp: In function ‘void writeSemantics(const ASTNode&, XMLOutputStream&, bool&, SBMLNamespaces*)’:
2025-09-08T04:12:27,499   ./base/sbml/math/MathML.cpp:1576:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,499    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T04:12:27,499         |             ^
2025-09-08T04:12:27,499   ./base/sbml/math/MathML.cpp:1574:31: note: ‘node’ declared here
2025-09-08T04:12:27,499    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,500         |                ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,500   ./base/sbml/math/MathML.cpp:1576:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,500    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T04:12:27,500         |                                ^
2025-09-08T04:12:27,500   ./base/sbml/math/MathML.cpp:1574:54: note: ‘stream’ declared here
2025-09-08T04:12:27,500    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,500         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,500   ./base/sbml/math/MathML.cpp:1576:56: warning: the compiler can assume that the address of ‘inSemantics’ will never be NULL [-Waddress]
2025-09-08T04:12:27,500    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T04:12:27,500         |                                                        ^
2025-09-08T04:12:27,501   ./base/sbml/math/MathML.cpp:1574:68: note: ‘inSemantics’ declared here
2025-09-08T04:12:27,501    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,501         |                                                              ~~~~~~^~~~~~~~~~~
2025-09-08T04:12:27,502   ./base/sbml/math/MathML.cpp: In function ‘void writeNode(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,502   ./base/sbml/math/MathML.cpp:1603:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:12:27,502    1603 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,502         |             ^
2025-09-08T04:12:27,502   ./base/sbml/math/MathML.cpp:1601:27: note: ‘node’ declared here
2025-09-08T04:12:27,502    1601 | writeNode (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,503         |            ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:12:27,503   ./base/sbml/math/MathML.cpp:1603:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,503    1603 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,503         |                                ^
2025-09-08T04:12:27,503   ./base/sbml/math/MathML.cpp:1601:50: note: ‘stream’ declared here
2025-09-08T04:12:27,503    1601 | writeNode (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,503         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,503   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’:
2025-09-08T04:12:27,503   ./base/sbml/math/MathML.cpp:1629:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,503    1629 |   if (&stream == NULL) return NULL;
2025-09-08T04:12:27,504         |               ^
2025-09-08T04:12:27,504   ./base/sbml/math/MathML.cpp:1627:29: note: ‘stream’ declared here
2025-09-08T04:12:27,504    1627 | readMathML (XMLInputStream& stream, std::string reqd_prefix, bool inRead)
2025-09-08T04:12:27,504         |             ~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,510   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,511   ./base/sbml/math/MathML.cpp:1723:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:12:27,511    1723 |   if (node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,511         |                               ^
2025-09-08T04:12:27,511   ./base/sbml/math/MathML.cpp:1721:52: note: ‘stream’ declared here
2025-09-08T04:12:27,511    1721 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2025-09-08T04:12:27,511         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:12:27,928   ./base/sbml/math/MathML.cpp: In function ‘void logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2025-09-08T04:12:27,928   ./base/sbml/math/MathML.cpp:275:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,928     275 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,928         |                                   ^
2025-09-08T04:12:27,928   ./base/sbml/math/MathML.cpp:275:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,928     275 |   if (&element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,929         |                ^
2025-09-08T04:12:27,929   ./base/sbml/math/MathML.cpp: In function ‘void setTypeOther(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T04:12:27,929   ./base/sbml/math/MathML.cpp:565:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,929     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,929         |             ^
2025-09-08T04:12:27,929   ./base/sbml/math/MathML.cpp:565:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,929     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,929         |                                 ^
2025-09-08T04:12:27,929   ./base/sbml/math/MathML.cpp:565:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,929     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,929         |                                         ^
2025-09-08T04:12:27,930   ./base/sbml/math/MathML.cpp: In function ‘void reduceBinary(ASTNode&)’:
2025-09-08T04:12:27,930   ./base/sbml/math/MathML.cpp:369:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,930     369 |   if (&node == NULL) return;
2025-09-08T04:12:27,930         |   ^~
2025-09-08T04:12:27,930   ./base/sbml/math/MathML.cpp: In function ‘void checkFunctionArgs(ASTNode&)’:
2025-09-08T04:12:27,930   ./base/sbml/math/MathML.cpp:337:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,930     337 |   if (&node == NULL) return;
2025-09-08T04:12:27,930         |   ^~
2025-09-08T04:12:27,932   ./base/sbml/math/MathML.cpp: In function ‘bool isMathMLNodeTag(const std::string&)’:
2025-09-08T04:12:27,932   ./base/sbml/math/MathML.cpp:621:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,932     621 |   if (&name == NULL) return false;
2025-09-08T04:12:27,932         |   ^~
2025-09-08T04:12:27,936   ./base/sbml/math/MathML.cpp: In function ‘const std::string trim(const std::string&)’:
2025-09-08T04:12:27,936   ./base/sbml/math/MathML.cpp:310:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,937     310 |   if (&s == NULL) return s;
2025-09-08T04:12:27,937         |   ^~
2025-09-08T04:12:27,939   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const std::string&, const std::string&, XMLOutputStream&)’:
2025-09-08T04:12:27,939   ./base/sbml/math/MathML.cpp:1267:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,939    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T04:12:27,939         |                 ^
2025-09-08T04:12:27,939   ./base/sbml/math/MathML.cpp:1267:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,939    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T04:12:27,939         |                                      ^
2025-09-08T04:12:27,939   ./base/sbml/math/MathML.cpp:1267:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,939    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2025-09-08T04:12:27,940         |                                              ^
2025-09-08T04:12:27,940   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const double&, long int, XMLOutputStream&)’:
2025-09-08T04:12:27,940   ./base/sbml/math/MathML.cpp:1232:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,940    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2025-09-08T04:12:27,940         |                 ^
2025-09-08T04:12:27,940   ./base/sbml/math/MathML.cpp:1232:36: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,940    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2025-09-08T04:12:27,940         |                                    ^
2025-09-08T04:12:27,940   ./base/sbml/math/MathML.cpp: In function ‘void writeDouble(const double&, XMLOutputStream&)’:
2025-09-08T04:12:27,940   ./base/sbml/math/MathML.cpp:1194:14: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,941    1194 |   if (&value == NULL || &stream == NULL) return;
2025-09-08T04:12:27,941         |              ^
2025-09-08T04:12:27,941   ./base/sbml/math/MathML.cpp:1194:33: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,941    1194 |   if (&value == NULL || &stream == NULL) return;
2025-09-08T04:12:27,941         |                                 ^
2025-09-08T04:12:27,942   ./base/sbml/math/MathML.cpp: In function ‘void writeCN(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,942   ./base/sbml/math/MathML.cpp:1060:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,942    1060 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,942         |             ^
2025-09-08T04:12:27,942   ./base/sbml/math/MathML.cpp:1060:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,942    1060 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,942         |                                ^
2025-09-08T04:12:27,943   ./base/sbml/math/MathML.cpp: In function ‘void writeCSymbol(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,943   ./base/sbml/math/MathML.cpp:1162:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,943    1162 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,943         |             ^
2025-09-08T04:12:27,944   ./base/sbml/math/MathML.cpp:1162:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,944    1162 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,944         |                                ^
2025-09-08T04:12:27,944   ./base/sbml/math/MathML.cpp: In function ‘void writeCI(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,944   ./base/sbml/math/MathML.cpp:1021:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,944    1021 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,944         |             ^
2025-09-08T04:12:27,944   ./base/sbml/math/MathML.cpp:1021:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,944    1021 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,944         |                                ^
2025-09-08T04:12:27,945   ./base/sbml/math/MathML.cpp: In function ‘void writeConstant(const ASTNode&, XMLOutputStream&)’:
2025-09-08T04:12:27,945   ./base/sbml/math/MathML.cpp:1136:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,945    1136 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,945         |             ^
2025-09-08T04:12:27,945   ./base/sbml/math/MathML.cpp:1136:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,945    1136 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,945         |                                ^
2025-09-08T04:12:27,945   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionRoot(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,945   ./base/sbml/math/MathML.cpp:1309:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,946    1309 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,946         |             ^
2025-09-08T04:12:27,946   ./base/sbml/math/MathML.cpp:1309:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,946    1309 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,946         |                                ^
2025-09-08T04:12:27,946   ./base/sbml/math/MathML.cpp: In function ‘void writeFunction(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,946   ./base/sbml/math/MathML.cpp:1336:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,946    1336 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,946         |             ^
2025-09-08T04:12:27,946   ./base/sbml/math/MathML.cpp:1336:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,947    1336 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,947         |                                ^
2025-09-08T04:12:27,947   ./base/sbml/math/MathML.cpp: In function ‘void writeNode(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,947   ./base/sbml/math/MathML.cpp:1603:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,947    1603 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,947         |             ^
2025-09-08T04:12:27,947   ./base/sbml/math/MathML.cpp:1603:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,947    1603 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,947         |                                ^
2025-09-08T04:12:27,947   ./base/sbml/math/MathML.cpp: In function ‘void writeSemantics(const ASTNode&, XMLOutputStream&, bool&, SBMLNamespaces*)’:
2025-09-08T04:12:27,948   ./base/sbml/math/MathML.cpp:1576:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,948    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T04:12:27,948         |             ^
2025-09-08T04:12:27,948   ./base/sbml/math/MathML.cpp:1576:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,948    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T04:12:27,948         |                                ^
2025-09-08T04:12:27,948   ./base/sbml/math/MathML.cpp:1576:40: warning: ‘nonnull’ argument ‘inSemantics’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,948    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2025-09-08T04:12:27,948         |                                        ^
2025-09-08T04:12:27,948   ./base/sbml/math/MathML.cpp: In function ‘void writeOperatorArgs(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,948   ./base/sbml/math/MathML.cpp:1435:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,949    1435 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,949         |             ^
2025-09-08T04:12:27,949   ./base/sbml/math/MathML.cpp:1435:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,949    1435 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,949         |                                ^
2025-09-08T04:12:27,949   ./base/sbml/math/MathML.cpp: In function ‘void writeOperator(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,949   ./base/sbml/math/MathML.cpp:1500:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,949    1500 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,949         |             ^
2025-09-08T04:12:27,949   ./base/sbml/math/MathML.cpp:1500:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,950    1500 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,950         |                                ^
2025-09-08T04:12:27,950   ./base/sbml/math/MathML.cpp: In function ‘void writeLambda(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,950   ./base/sbml/math/MathML.cpp:1395:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,950    1395 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,950         |             ^
2025-09-08T04:12:27,950   ./base/sbml/math/MathML.cpp:1395:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,950    1395 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,950         |                                ^
2025-09-08T04:12:27,950   ./base/sbml/math/MathML.cpp: In function ‘void writePiecewise(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,950   ./base/sbml/math/MathML.cpp:1533:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,951    1533 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,951         |             ^
2025-09-08T04:12:27,951   ./base/sbml/math/MathML.cpp:1533:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,951    1533 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,951         |                                ^
2025-09-08T04:12:27,951   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionLog(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,951   ./base/sbml/math/MathML.cpp:1286:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,951    1286 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,951         |             ^
2025-09-08T04:12:27,951   ./base/sbml/math/MathML.cpp:1286:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,951    1286 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,952         |                                ^
2025-09-08T04:12:27,952   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2025-09-08T04:12:27,952   ./base/sbml/math/MathML.cpp:1723:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,952    1723 |   if (node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,952         |                               ^
2025-09-08T04:12:27,954   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCN(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T04:12:27,954   ./base/sbml/math/MathML.cpp:436:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,954     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,954         |             ^
2025-09-08T04:12:27,955   ./base/sbml/math/MathML.cpp:436:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,955     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,955         |                                 ^
2025-09-08T04:12:27,955   ./base/sbml/math/MathML.cpp:436:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,955     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,955         |                                         ^
2025-09-08T04:12:27,956   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T04:12:27,956   ./base/sbml/math/MathML.cpp:388:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,956     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,956         |             ^
2025-09-08T04:12:27,956   ./base/sbml/math/MathML.cpp:388:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,956     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,956         |                                 ^
2025-09-08T04:12:27,956   ./base/sbml/math/MathML.cpp:388:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,956     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,957         |                                         ^
2025-09-08T04:12:27,957   ./base/sbml/math/MathML.cpp: In function ‘void setType(ASTNode&, const XMLToken&, XMLInputStream&)’:
2025-09-08T04:12:27,957   ./base/sbml/math/MathML.cpp:585:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,957     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,957         |             ^
2025-09-08T04:12:27,957   ./base/sbml/math/MathML.cpp:585:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,957     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,957         |                                 ^
2025-09-08T04:12:27,957   ./base/sbml/math/MathML.cpp:585:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,957     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2025-09-08T04:12:27,958         |                                         ^
2025-09-08T04:12:27,961   ./base/sbml/math/MathML.cpp: In function ‘void readMathML(ASTNode&, XMLInputStream&, std::string, bool)’:
2025-09-08T04:12:27,961   ./base/sbml/math/MathML.cpp:650:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,961     650 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,961         |             ^
2025-09-08T04:12:27,962   ./base/sbml/math/MathML.cpp:650:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,962     650 |   if (&node == NULL || &stream == NULL) return;
2025-09-08T04:12:27,962         |                                ^
2025-09-08T04:12:27,964   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’:
2025-09-08T04:12:27,964   ./base/sbml/math/MathML.cpp:1629:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:12:27,964    1629 |   if (&stream == NULL) return NULL;
2025-09-08T04:12:27,964         |   ^~
2025-09-08T04:12:38,428   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:12:38,428                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:12:38,428                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:12:38,428                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:12:38,428                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:12:38,429                    from ./base//sbml/extension/SBMLExtensionRegister.h:51,
2025-09-08T04:12:38,429                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2025-09-08T04:12:38,429   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:12:38,429      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:12:38,429         |                           ^~~~~~~~~~~~~~
2025-09-08T04:12:38,430   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:12:38,430                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:12:38,430                    from ./base//sbml/SBMLError.h:457,
2025-09-08T04:12:38,430                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T04:12:38,430   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:12:38,430     117 |     struct unary_function
2025-09-08T04:12:38,430         |            ^~~~~~~~~~~~~~
2025-09-08T04:12:43,572   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:12:43,572                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:12:43,572                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:12:43,572                    from ./base//sbml/extension/SBasePlugin.h:68,
2025-09-08T04:12:43,573                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2025-09-08T04:12:43,573                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2025-09-08T04:12:43,573   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:12:43,573      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:12:43,573         |                           ^~~~~~~~~~~~~~
2025-09-08T04:12:43,573   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:12:43,573                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:12:43,573                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:12:43,573                    from /usr/include/c++/14/ios:44,
2025-09-08T04:12:43,574                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:12:43,574                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2025-09-08T04:12:43,574   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:12:43,574     117 |     struct unary_function
2025-09-08T04:12:43,574         |            ^~~~~~~~~~~~~~
2025-09-08T04:12:55,521   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:12:55,522                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:12:55,522                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:12:55,522                    from ./base//sbml/extension/SBasePlugin.h:68,
2025-09-08T04:12:55,522                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:67,
2025-09-08T04:12:55,522                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2025-09-08T04:12:55,522   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:12:55,522      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:12:55,522         |                           ^~~~~~~~~~~~~~
2025-09-08T04:12:55,523   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:12:55,523                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:12:55,523                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:12:55,523                    from /usr/include/c++/14/ios:44,
2025-09-08T04:12:55,523                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:12:55,524                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2025-09-08T04:12:55,524   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:12:55,524     117 |     struct unary_function
2025-09-08T04:12:55,524         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:02,766   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:02,766                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:02,767                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:02,767                    from ./base//sbml/extension/SBasePlugin.h:68,
2025-09-08T04:13:02,767                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:64,
2025-09-08T04:13:02,767                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2025-09-08T04:13:02,767   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:02,767      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:02,767         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:02,767   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:02,768                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:02,768                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:02,768                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:02,768                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:02,768                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2025-09-08T04:13:02,768   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:02,768     117 |     struct unary_function
2025-09-08T04:13:02,768         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:03,101   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2025-09-08T04:13:03,101   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T04:13:03,101     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T04:13:03,101         |                  ^
2025-09-08T04:13:03,102   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:450:50: note: ‘attribute’ declared here
2025-09-08T04:13:03,102     450 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2025-09-08T04:13:03,102         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:13:03,102   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T04:13:03,102     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T04:13:03,102         |                                             ^
2025-09-08T04:13:03,102   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:451:50: note: ‘wrongattribute’ declared here
2025-09-08T04:13:03,102     451 |                               const std::string& wrongattribute)
2025-09-08T04:13:03,102         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T04:13:03,583   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:03,583     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T04:13:03,583         |                  ^
2025-09-08T04:13:03,583   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:03,583     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T04:13:03,584         |                                             ^
2025-09-08T04:13:08,114   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:08,115                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:08,115                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:08,115                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:08,115                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:08,115                    from ./base//sbml/packages/comp/sbml/CompBase.h:44,
2025-09-08T04:13:08,115                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:30:
2025-09-08T04:13:08,115   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:08,115      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:08,115         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:08,116   In file included from /usr/include/c++/14/bits/stl_tree.h:65,
2025-09-08T04:13:08,116                    from /usr/include/c++/14/set:62,
2025-09-08T04:13:08,116                    from ./base//sbml/packages/comp/sbml/CompBase.h:41:
2025-09-08T04:13:08,116   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:08,117     117 |     struct unary_function
2025-09-08T04:13:08,117         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:08,517   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T04:13:08,518   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T04:13:08,518     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:13:08,518         |                   ^
2025-09-08T04:13:08,518   ./base/sbml/packages/comp/sbml/CompBase.cpp:157:48: note: ‘attributes’ declared here
2025-09-08T04:13:08,518     157 | CompBase::readAttributes (const XMLAttributes& attributes,
2025-09-08T04:13:08,518         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T04:13:08,519   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2025-09-08T04:13:08,519     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:13:08,519         |                                                  ^
2025-09-08T04:13:08,519   ./base/sbml/packages/comp/sbml/CompBase.cpp:158:53: note: ‘expectedAttributes’ declared here
2025-09-08T04:13:08,519     158 |                           const ExpectedAttributes& expectedAttributes)
2025-09-08T04:13:08,519         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T04:13:08,522   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T04:13:08,522   ./base/sbml/packages/comp/sbml/CompBase.cpp:202:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:13:08,522     202 |   if(&element == NULL) return;
2025-09-08T04:13:08,522         |               ^
2025-09-08T04:13:08,522   ./base/sbml/packages/comp/sbml/CompBase.cpp:200:48: note: ‘element’ declared here
2025-09-08T04:13:08,523     200 | CompBase::logUnknownElement(const std::string &element)
2025-09-08T04:13:08,523         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:13:08,529   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T04:13:08,530   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T04:13:08,530     226 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:08,530         |                  ^
2025-09-08T04:13:08,530   ./base/sbml/packages/comp/sbml/CompBase.cpp:223:50: note: ‘attribute’ declared here
2025-09-08T04:13:08,530     223 | CompBase::logUnknownAttribute(const std::string &attribute,
2025-09-08T04:13:08,530         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:13:08,530   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:13:08,531     226 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:08,531         |                                      ^
2025-09-08T04:13:08,531   ./base/sbml/packages/comp/sbml/CompBase.cpp:224:50: note: ‘element’ declared here
2025-09-08T04:13:08,531     224 |                               const std::string& element)
2025-09-08T04:13:08,531         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:13:08,538   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T04:13:08,538   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T04:13:08,538     260 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:08,539         |                  ^
2025-09-08T04:13:08,539   ./base/sbml/packages/comp/sbml/CompBase.cpp:256:45: note: ‘attribute’ declared here
2025-09-08T04:13:08,539     256 | CompBase::logEmptyString(const std::string &attribute,
2025-09-08T04:13:08,539         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:13:08,539   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:13:08,539     260 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:08,540         |                                      ^
2025-09-08T04:13:08,540   ./base/sbml/packages/comp/sbml/CompBase.cpp:257:45: note: ‘element’ declared here
2025-09-08T04:13:08,540     257 |                          const std::string& element)
2025-09-08T04:13:08,540         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:13:08,544   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T04:13:08,545   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T04:13:08,545     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T04:13:08,545         |                  ^
2025-09-08T04:13:08,545   ./base/sbml/packages/comp/sbml/CompBase.cpp:277:43: note: ‘attribute’ declared here
2025-09-08T04:13:08,545     277 | CompBase::logInvalidId(const std::string& attribute,
2025-09-08T04:13:08,545         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:13:08,546   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2025-09-08T04:13:08,546     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T04:13:08,546         |                                             ^
2025-09-08T04:13:08,546   ./base/sbml/packages/comp/sbml/CompBase.cpp:278:43: note: ‘wrongattribute’ declared here
2025-09-08T04:13:08,546     278 |                        const std::string& wrongattribute,
2025-09-08T04:13:08,546         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T04:13:08,564   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T04:13:08,565   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2025-09-08T04:13:08,565     378 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:08,565         |                  ^
2025-09-08T04:13:08,565   ./base/sbml/packages/comp/sbml/CompBase.cpp:374:50: note: ‘attribute’ declared here
2025-09-08T04:13:08,565     374 | CompBase::logMissingAttribute(const std::string& attribute,
2025-09-08T04:13:08,565         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:13:08,566   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:13:08,566     378 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:08,566         |                                      ^
2025-09-08T04:13:08,566   ./base/sbml/packages/comp/sbml/CompBase.cpp:375:50: note: ‘element’ declared here
2025-09-08T04:13:08,566     375 |                               const std::string& element)
2025-09-08T04:13:08,566         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:13:09,135   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2025-09-08T04:13:09,135   ./base/sbml/packages/comp/sbml/CompBase.cpp:202:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,135     202 |   if(&element == NULL) return;
2025-09-08T04:13:09,135         |   ^~
2025-09-08T04:13:09,136   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2025-09-08T04:13:09,136   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,136     226 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:09,136         |                  ^
2025-09-08T04:13:09,136   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,137     226 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:09,137         |                                      ^
2025-09-08T04:13:09,137   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2025-09-08T04:13:09,138   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,138     260 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:09,138         |                  ^
2025-09-08T04:13:09,138   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,138     260 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:09,138         |                                      ^
2025-09-08T04:13:09,140   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2025-09-08T04:13:09,140   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,140     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T04:13:09,140         |                  ^
2025-09-08T04:13:09,141   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,141     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2025-09-08T04:13:09,141         |                                             ^
2025-09-08T04:13:09,142   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2025-09-08T04:13:09,142   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,142     378 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:09,142         |                  ^
2025-09-08T04:13:09,143   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,143     378 |   if (&attribute == NULL || &element == NULL) return;
2025-09-08T04:13:09,143         |                                      ^
2025-09-08T04:13:09,152   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2025-09-08T04:13:09,152   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,152     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:13:09,152         |                   ^
2025-09-08T04:13:09,152   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:09,152     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2025-09-08T04:13:09,152         |                                                  ^
2025-09-08T04:13:14,742   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:14,742                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:14,742                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:14,743                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:14,743                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:14,743                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:13:14,743                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2025-09-08T04:13:14,743   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:14,743      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:14,743         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:14,743   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:14,743                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:14,744                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:14,744                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:14,744                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:14,744                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:13:14,744                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2025-09-08T04:13:14,744   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:14,744     117 |     struct unary_function
2025-09-08T04:13:14,744         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:20,180   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:20,181                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:20,181                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:20,181                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:20,181                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:20,181                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:13:20,181                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2025-09-08T04:13:20,181   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:20,181      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:20,182         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:20,182   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:20,182                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:20,182                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:20,182                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:20,182                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:20,182                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:13:20,182                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2025-09-08T04:13:20,182   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:20,183     117 |     struct unary_function
2025-09-08T04:13:20,183         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:29,329   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:29,329                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:29,329                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:29,329                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:29,329                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:29,329                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:13:29,329                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2025-09-08T04:13:29,329   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:29,330      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:29,330         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:29,330   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:29,331                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:29,331                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:29,331                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:29,331                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:29,331                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:13:29,331                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2025-09-08T04:13:29,331   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:29,331     117 |     struct unary_function
2025-09-08T04:13:29,331         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:29,640   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2025-09-08T04:13:29,640   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:13:29,640     118 |   if (&(sid) != NULL)
2025-09-08T04:13:29,640         |              ^
2025-09-08T04:13:29,641   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2025-09-08T04:13:29,641     113 | ListOfDeletions::remove (const std::string& sid)
2025-09-08T04:13:29,641         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:13:30,119   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:30,119     118 |   if (&(sid) != NULL)
2025-09-08T04:13:30,119         |   ^~
2025-09-08T04:13:33,885   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:33,885                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:33,885                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:33,885                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:33,885                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:33,885                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:13:33,885                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2025-09-08T04:13:33,885   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:33,886      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:33,886         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:33,886   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:33,887                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:33,887                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:33,887                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:33,887                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:33,887                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:13:33,887                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2025-09-08T04:13:33,887   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:33,887     117 |     struct unary_function
2025-09-08T04:13:33,887         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:38,468   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:38,468                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:38,468                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:38,468                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:38,468                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:38,468                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:13:38,468                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2025-09-08T04:13:38,469   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:38,469      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:38,469         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:38,469   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:38,469                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:38,469                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:38,469                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:38,469                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:38,469                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:13:38,470                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2025-09-08T04:13:38,470   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:38,470     117 |     struct unary_function
2025-09-08T04:13:38,470         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:43,063   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:43,064                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:43,064                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:43,064                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:43,064                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:43,064                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:13:43,064                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2025-09-08T04:13:43,064   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:43,064      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:43,064         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:43,065   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:43,065                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:43,065                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:43,065                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:43,065                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:43,065                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:13:43,065                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2025-09-08T04:13:43,065   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:43,065     117 |     struct unary_function
2025-09-08T04:13:43,065         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:43,369   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2025-09-08T04:13:43,369   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:13:43,370     113 |   if (&(sid) != NULL)
2025-09-08T04:13:43,370         |              ^
2025-09-08T04:13:43,370   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2025-09-08T04:13:43,370     108 | ListOfPorts::remove (const std::string& sid)
2025-09-08T04:13:43,370         |                      ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:13:43,839   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:43,839     113 |   if (&(sid) != NULL)
2025-09-08T04:13:43,839         |   ^~
2025-09-08T04:13:47,566   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:47,566                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:47,566                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:47,567                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:47,567                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:47,567                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:13:47,567                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2025-09-08T04:13:47,567   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:47,567      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:47,567         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:47,567   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:47,568                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:47,568                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:47,568                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:47,568                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:47,568                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:13:47,568                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2025-09-08T04:13:47,568   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:47,568     117 |     struct unary_function
2025-09-08T04:13:47,568         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:51,757   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:51,757                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:51,757                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:51,758                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:51,758                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:51,758                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:13:51,758                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2025-09-08T04:13:51,758   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:51,758      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:51,758         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:51,758   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:51,759                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:51,759                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:51,759                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:51,759                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:51,759                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:13:51,759                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2025-09-08T04:13:51,759   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:51,759     117 |     struct unary_function
2025-09-08T04:13:51,759         |            ^~~~~~~~~~~~~~
2025-09-08T04:13:52,072   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2025-09-08T04:13:52,072   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2025-09-08T04:13:52,072     113 |   if (&(sid) != NULL)
2025-09-08T04:13:52,073         |              ^
2025-09-08T04:13:52,073   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2025-09-08T04:13:52,073     108 | ListOfSubmodels::remove (const std::string& sid)
2025-09-08T04:13:52,073         |                          ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:13:52,550   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:13:52,550     113 |   if (&(sid) != NULL)
2025-09-08T04:13:52,550         |   ^~
2025-09-08T04:13:56,322   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:13:56,322                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:13:56,322                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:13:56,322                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:13:56,322                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:13:56,323                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:13:56,323                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2025-09-08T04:13:56,323   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:13:56,323      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:13:56,323         |                           ^~~~~~~~~~~~~~
2025-09-08T04:13:56,323   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:13:56,323                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:13:56,323                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:13:56,323                    from /usr/include/c++/14/ios:44,
2025-09-08T04:13:56,324                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:13:56,324                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:13:56,324                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2025-09-08T04:13:56,324   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:13:56,324     117 |     struct unary_function
2025-09-08T04:13:56,324         |            ^~~~~~~~~~~~~~
2025-09-08T04:14:00,659   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:14:00,659                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:14:00,659                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:14:00,659                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:14:00,659                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:14:00,659                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:14:00,659                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2025-09-08T04:14:00,659   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:14:00,660      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:14:00,660         |                           ^~~~~~~~~~~~~~
2025-09-08T04:14:00,660   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:14:00,660                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:14:00,660                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:14:00,660                    from /usr/include/c++/14/ios:44,
2025-09-08T04:14:00,660                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:14:00,660                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:14:00,660                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2025-09-08T04:14:00,661   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:14:00,661     117 |     struct unary_function
2025-09-08T04:14:00,661         |            ^~~~~~~~~~~~~~
2025-09-08T04:14:05,972   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:55,
2025-09-08T04:14:05,972                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2025-09-08T04:14:05,972   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:14:05,973      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:14:05,973         |                           ^~~~~~~~~~~~~~
2025-09-08T04:14:05,973   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:14:05,974                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:14:05,974                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:14:05,974                    from /usr/include/c++/14/ios:44,
2025-09-08T04:14:05,974                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:14:05,974                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:14:05,974                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2025-09-08T04:14:05,974   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:14:05,974     117 |     struct unary_function
2025-09-08T04:14:05,974         |            ^~~~~~~~~~~~~~
2025-09-08T04:14:10,650   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:14:10,650                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:14:10,650                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:14:10,651                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:14:10,651                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:14:10,651                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:14:10,651                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2025-09-08T04:14:10,651   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:14:10,651      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:14:10,651         |                           ^~~~~~~~~~~~~~
2025-09-08T04:14:10,651   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:14:10,651                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:14:10,652                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:14:10,652                    from /usr/include/c++/14/ios:44,
2025-09-08T04:14:10,652                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:14:10,652                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:14:10,652                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2025-09-08T04:14:10,652   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:14:10,652     117 |     struct unary_function
2025-09-08T04:14:10,652         |            ^~~~~~~~~~~~~~
2025-09-08T04:14:17,487   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:14:17,488                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:14:17,488                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:14:17,488                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:14:17,488                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:14:17,488                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:14:17,488                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2025-09-08T04:14:17,488   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:14:17,488      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:14:17,488         |                           ^~~~~~~~~~~~~~
2025-09-08T04:14:17,489   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:14:17,489                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:14:17,489                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:14:17,489                    from /usr/include/c++/14/ios:44,
2025-09-08T04:14:17,489                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:14:17,489                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:14:17,489                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2025-09-08T04:14:17,489   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:14:17,489     117 |     struct unary_function
2025-09-08T04:14:17,489         |            ^~~~~~~~~~~~~~
2025-09-08T04:14:24,509   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:14:24,510                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:14:24,510                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:14:24,510                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:14:24,510                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:14:24,510                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2025-09-08T04:14:24,510                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:37:
2025-09-08T04:14:24,510   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:14:24,510      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:14:24,510         |                           ^~~~~~~~~~~~~~
2025-09-08T04:14:24,511   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:14:24,511                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:14:24,511                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:14:24,511                    from /usr/include/c++/14/ios:44,
2025-09-08T04:14:24,511                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:14:24,511                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:14:24,511                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:28:
2025-09-08T04:14:24,511   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:14:24,511     117 |     struct unary_function
2025-09-08T04:14:24,511         |            ^~~~~~~~~~~~~~
2025-09-08T04:14:33,354   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:14:33,354                    from ./base//sbml/RateRule.h:113,
2025-09-08T04:14:33,355                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2025-09-08T04:14:33,355   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:14:33,355      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:14:33,355         |                           ^~~~~~~~~~~~~~
2025-09-08T04:14:33,355   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:14:33,355                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:14:33,355                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:14:33,355                    from /usr/include/c++/14/ios:44,
2025-09-08T04:14:33,355                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:14:33,356                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:14:33,356                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2025-09-08T04:14:33,356   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:14:33,356     117 |     struct unary_function
2025-09-08T04:14:33,356         |            ^~~~~~~~~~~~~~
2025-09-08T04:14:46,557   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:14:46,557                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:14:46,557                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:14:46,558                    from ./base//sbml/extension/SBasePlugin.h:68,
2025-09-08T04:14:46,558                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2025-09-08T04:14:46,558                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:470,
2025-09-08T04:14:46,558                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2025-09-08T04:14:46,558   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:14:46,558      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:14:46,558         |                           ^~~~~~~~~~~~~~
2025-09-08T04:14:46,559   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:14:46,559                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:14:46,559                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:14:46,559                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:469:
2025-09-08T04:14:46,559   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:14:46,559     117 |     struct unary_function
2025-09-08T04:14:46,559         |            ^~~~~~~~~~~~~~
2025-09-08T04:14:47,047   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:14:47,047   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:14:47,047     134 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T04:14:47,047         |              ^
2025-09-08T04:14:47,048   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:132:54: note: ‘props’ declared here
2025-09-08T04:14:47,048     132 |                         (const ConversionProperties &props) const
2025-09-08T04:14:47,048         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:14:47,867   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:14:47,867     134 |   if (&props == NULL || !props.hasOption("flatten comp"))
2025-09-08T04:14:47,868         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:14:56,912   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:14:56,912                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:14:56,912                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:14:56,912                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2025-09-08T04:14:56,913   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:14:56,913      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:14:56,913         |                           ^~~~~~~~~~~~~~
2025-09-08T04:14:56,913   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:14:56,913                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2025-09-08T04:14:56,913                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2025-09-08T04:14:56,913   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:14:56,913     117 |     struct unary_function
2025-09-08T04:14:56,913         |            ^~~~~~~~~~~~~~
2025-09-08T04:14:57,250   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T04:14:57,250   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:14:57,250      54 |   if (&orig == NULL)
2025-09-08T04:14:57,251         |             ^
2025-09-08T04:14:57,251   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2025-09-08T04:14:57,251      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2025-09-08T04:14:57,251         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:14:57,252   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2025-09-08T04:14:57,252   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:14:57,253      80 |   if (&rhs == NULL)
2025-09-08T04:14:57,253         |            ^
2025-09-08T04:14:57,253   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2025-09-08T04:14:57,253      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2025-09-08T04:14:57,253         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:14:57,732   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:14:57,732      80 |   if (&rhs == NULL)
2025-09-08T04:14:57,732         |   ^~
2025-09-08T04:14:57,739   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2025-09-08T04:14:57,739   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:14:57,739      54 |   if (&orig == NULL)
2025-09-08T04:14:57,740         |   ^~
2025-09-08T04:15:01,645   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:15:01,645                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:15:01,645                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:15:01,645                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2025-09-08T04:15:01,645   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:01,646      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:01,646         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:01,646   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:15:01,646                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2025-09-08T04:15:01,646                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2025-09-08T04:15:01,646   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:01,646     117 |     struct unary_function
2025-09-08T04:15:01,646         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:01,902   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T04:15:01,902   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:15:01,902      50 |   if (&orig == NULL)
2025-09-08T04:15:01,902         |             ^
2025-09-08T04:15:01,902   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2025-09-08T04:15:01,903      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2025-09-08T04:15:01,903         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:15:01,903   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T04:15:01,904   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:15:01,904      76 |   if (&rhs == NULL)
2025-09-08T04:15:01,904         |            ^
2025-09-08T04:15:01,904   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2025-09-08T04:15:01,904      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2025-09-08T04:15:01,904         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:15:02,306   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2025-09-08T04:15:02,307   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:15:02,307      50 |   if (&orig == NULL)
2025-09-08T04:15:02,307         |   ^~
2025-09-08T04:15:02,307   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2025-09-08T04:15:02,307   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:15:02,307      76 |   if (&rhs == NULL)
2025-09-08T04:15:02,307         |   ^~
2025-09-08T04:15:05,289   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:15:05,289                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:15:05,289                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:15:05,289                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2025-09-08T04:15:05,289   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:05,290      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:05,290         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:05,290   In file included from /usr/include/c++/14/bits/refwrap.h:39,
2025-09-08T04:15:05,290                    from /usr/include/c++/14/vector:68,
2025-09-08T04:15:05,290                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2025-09-08T04:15:05,290   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:05,290     117 |     struct unary_function
2025-09-08T04:15:05,290         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:09,631   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:15:09,631                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:15:09,631                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:15:09,631                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2025-09-08T04:15:09,632   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:09,632      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:09,632         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:09,632   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:15:09,632                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2025-09-08T04:15:09,632                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2025-09-08T04:15:09,632   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:09,632     117 |     struct unary_function
2025-09-08T04:15:09,632         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:09,877   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T04:15:09,877   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:15:09,878      53 |   if (&orig == NULL)
2025-09-08T04:15:09,878         |             ^
2025-09-08T04:15:09,878   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2025-09-08T04:15:09,878      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2025-09-08T04:15:09,878         |                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:15:09,880   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T04:15:09,880   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:15:09,880      83 |   if (&rhs == NULL)
2025-09-08T04:15:09,880         |            ^
2025-09-08T04:15:09,880   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2025-09-08T04:15:09,880      81 | SBMLUri::operator=(const SBMLUri& rhs)
2025-09-08T04:15:09,880         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T04:15:09,889   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2025-09-08T04:15:09,889   ./base/sbml/packages/comp/util/SBMLUri.cpp:164:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T04:15:09,889     164 |     ptr_fun<int,int>(tolower)); // scheme is icase
2025-09-08T04:15:09,889         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:15:09,889   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T04:15:09,889    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T04:15:09,889         |     ^~~~~~~
2025-09-08T04:15:09,893   ./base/sbml/packages/comp/util/SBMLUri.cpp:202:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2025-09-08T04:15:09,894     202 |      ptr_fun<int,int>(tolower)); // host is icase
2025-09-08T04:15:09,894         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2025-09-08T04:15:09,894   /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here
2025-09-08T04:15:09,894    1123 |     ptr_fun(_Result (*__x)(_Arg))
2025-09-08T04:15:09,894         |     ^~~~~~~
2025-09-08T04:15:10,358   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2025-09-08T04:15:10,358   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:15:10,358      53 |   if (&orig == NULL)
2025-09-08T04:15:10,358         |   ^~
2025-09-08T04:15:10,359   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2025-09-08T04:15:10,359   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:15:10,359      83 |   if (&rhs == NULL)
2025-09-08T04:15:10,359         |   ^~
2025-09-08T04:15:14,606   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:15:14,606                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:15:14,607                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:15:14,607                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2025-09-08T04:15:14,607                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2025-09-08T04:15:14,607   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:14,607      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:14,607         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:14,607   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:15:14,607                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2025-09-08T04:15:14,608                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2025-09-08T04:15:14,608                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2025-09-08T04:15:14,608   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:14,608     117 |     struct unary_function
2025-09-08T04:15:14,608         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:30,886   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:15:30,886                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:15:30,887                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:15:30,887                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2025-09-08T04:15:30,887                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2025-09-08T04:15:30,887   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:30,887      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:30,887         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:30,887   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:15:30,887                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2025-09-08T04:15:30,887                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2025-09-08T04:15:30,888                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2025-09-08T04:15:30,888   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:30,888     117 |     struct unary_function
2025-09-08T04:15:30,888         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:34,703   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:15:34,703                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:15:34,703                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:15:34,703                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2025-09-08T04:15:34,704                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2025-09-08T04:15:34,704   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:34,704      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:34,704         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:34,704   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:15:34,704                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2025-09-08T04:15:34,704                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2025-09-08T04:15:34,704                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2025-09-08T04:15:34,704   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:34,705     117 |     struct unary_function
2025-09-08T04:15:34,705         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:38,545   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:15:38,546                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:15:38,546                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:15:38,546                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2025-09-08T04:15:38,546   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:38,546      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:38,546         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:38,547   In file included from /usr/include/c++/14/functional:49,
2025-09-08T04:15:38,547                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2025-09-08T04:15:38,547   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:38,547     117 |     struct unary_function
2025-09-08T04:15:38,547         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:39,160   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:39,160      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T04:15:39,160         |                       ^~~~~~~~~~~~~~
2025-09-08T04:15:39,160   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:39,160     117 |     struct unary_function
2025-09-08T04:15:39,160         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:39,324   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T04:15:39,325   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T04:15:39,325     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T04:15:39,325         |            ^
2025-09-08T04:15:39,325   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2025-09-08T04:15:39,325     325 |   virtual bool visit (const SBase &x)
2025-09-08T04:15:39,325         |                       ~~~~~~~~~~~~~^
2025-09-08T04:15:39,341   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T04:15:39,341   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T04:15:39,341     481 |   if (&d == NULL) return 0;
2025-09-08T04:15:39,341         |          ^
2025-09-08T04:15:39,341   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2025-09-08T04:15:39,341     479 | CompValidator::validate (const SBMLDocument& d)
2025-09-08T04:15:39,342         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T04:15:39,356   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T04:15:39,356   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T04:15:39,356     610 |   if (&filename == NULL) return 0;
2025-09-08T04:15:39,356         |                 ^
2025-09-08T04:15:39,357   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2025-09-08T04:15:39,357     608 | CompValidator::validate (const std::string& filename)
2025-09-08T04:15:39,357         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:15:40,134   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2025-09-08T04:15:40,134   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:15:40,134     327 |     if (&x == NULL || x.getPackageName() != "comp")
2025-09-08T04:15:40,134         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:15:40,153   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2025-09-08T04:15:40,153   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:15:40,153     481 |   if (&d == NULL) return 0;
2025-09-08T04:15:40,153         |   ^~
2025-09-08T04:15:40,181   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2025-09-08T04:15:40,182   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:15:40,182     610 |   if (&filename == NULL) return 0;
2025-09-08T04:15:40,182         |   ^~
2025-09-08T04:15:45,395   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:15:45,396                    from ./base//sbml/Model.h:446,
2025-09-08T04:15:45,396                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2025-09-08T04:15:45,396   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:45,396      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:45,396         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:45,396   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:15:45,397                    from ./base//sbml/Model.h:444:
2025-09-08T04:15:45,397   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:45,397     117 |     struct unary_function
2025-09-08T04:15:45,397         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:49,629   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:15:49,629                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:15:49,630                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:15:49,630                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2025-09-08T04:15:49,630   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:49,630      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:49,630         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:49,631   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:15:49,631                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:15:49,631   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:49,631     117 |     struct unary_function
2025-09-08T04:15:49,631         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:53,880   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:15:53,880                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:15:53,880                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:15:53,880                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T04:15:53,881                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2025-09-08T04:15:53,881   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:53,881      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:53,881         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:53,881   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:15:53,881                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2025-09-08T04:15:53,881   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:53,881     117 |     struct unary_function
2025-09-08T04:15:53,881         |            ^~~~~~~~~~~~~~
2025-09-08T04:15:57,946   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:15:57,947                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:15:57,947                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:15:57,947                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2025-09-08T04:15:57,947   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:15:57,947      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:15:57,947         |                           ^~~~~~~~~~~~~~
2025-09-08T04:15:57,948   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:15:57,948                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:15:57,948   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:15:57,948     117 |     struct unary_function
2025-09-08T04:15:57,948         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:01,696   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:16:01,696                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:16:01,696                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:16:01,696                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2025-09-08T04:16:01,697   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:01,697      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:01,697         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:01,697   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:01,697                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:16:01,697   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:01,697     117 |     struct unary_function
2025-09-08T04:16:01,697         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:05,605   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:05,605                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:05,605                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2025-09-08T04:16:05,605   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:05,606      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:05,606         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:05,606   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:05,607                    from ./base//sbml/Model.h:444:
2025-09-08T04:16:05,607   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:05,607     117 |     struct unary_function
2025-09-08T04:16:05,607         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:12,793   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:12,793                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:12,793                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2025-09-08T04:16:12,793   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:12,793      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:12,793         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:12,794   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:12,794                    from ./base//sbml/Model.h:444:
2025-09-08T04:16:12,794   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:12,794     117 |     struct unary_function
2025-09-08T04:16:12,794         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:17,164   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:17,164                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:17,164                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2025-09-08T04:16:17,164   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:17,165      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:17,165         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:17,165   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:17,166                    from ./base//sbml/Model.h:444:
2025-09-08T04:16:17,166   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:17,166     117 |     struct unary_function
2025-09-08T04:16:17,166         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:24,308   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:16:24,308                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:16:24,308                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:16:24,308                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2025-09-08T04:16:24,308                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2025-09-08T04:16:24,309                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2025-09-08T04:16:24,309   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:24,309      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:24,309         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:24,310   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:24,310                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:16:24,310                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:16:24,310                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:16:24,310                    from ./base//sbml/SBase.h:145,
2025-09-08T04:16:24,310                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2025-09-08T04:16:24,310   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:24,310     117 |     struct unary_function
2025-09-08T04:16:24,310         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:29,131   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:29,131                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:29,131                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2025-09-08T04:16:29,131   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:29,131      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:29,131         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:29,132   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:29,132                    from ./base//sbml/Model.h:444:
2025-09-08T04:16:29,132   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:29,133     117 |     struct unary_function
2025-09-08T04:16:29,133         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:33,140   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:33,141                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:33,141                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2025-09-08T04:16:33,141   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:33,141      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:33,141         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:33,142   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:33,142                    from ./base//sbml/Model.h:444:
2025-09-08T04:16:33,142   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:33,142     117 |     struct unary_function
2025-09-08T04:16:33,142         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:37,099   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:37,100                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:37,100                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2025-09-08T04:16:37,100   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:37,100      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:37,100         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:37,101   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:37,101                    from ./base//sbml/Model.h:444:
2025-09-08T04:16:37,101   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:37,101     117 |     struct unary_function
2025-09-08T04:16:37,101         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:41,023   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:41,023                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:41,023                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2025-09-08T04:16:41,023   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:41,023      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:41,023         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:41,024   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:41,024                    from ./base//sbml/Model.h:444:
2025-09-08T04:16:41,024   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:41,024     117 |     struct unary_function
2025-09-08T04:16:41,024         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:45,088   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:45,088                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:45,088                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2025-09-08T04:16:45,088   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:45,088      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:45,088         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:45,089   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:45,089                    from ./base//sbml/Model.h:444:
2025-09-08T04:16:45,089   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:45,089     117 |     struct unary_function
2025-09-08T04:16:45,089         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:49,331   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:49,331                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:49,331                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2025-09-08T04:16:49,331   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:49,332      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:49,332         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:49,332   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:49,333                    from ./base//sbml/Model.h:444:
2025-09-08T04:16:49,333   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:49,333     117 |     struct unary_function
2025-09-08T04:16:49,333         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:54,297   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:54,298                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:16:54,298                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:16:54,298                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:16:54,298                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:16:54,298                    from ./base//sbml/extension/SBMLExtensionRegister.h:51,
2025-09-08T04:16:54,298                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2025-09-08T04:16:54,298   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:54,298      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:54,298         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:54,299   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:54,299                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:16:54,299                    from ./base//sbml/SBMLError.h:457,
2025-09-08T04:16:54,299                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T04:16:54,299   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:54,300     117 |     struct unary_function
2025-09-08T04:16:54,300         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:54,652   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:16:54,652                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T04:16:54,652                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2025-09-08T04:16:54,652   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:54,652     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:16:54,652         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:16:54,652   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:54,653     117 |     struct unary_function
2025-09-08T04:16:54,653         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:54,660   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:54,660     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:16:54,660         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:16:54,660   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:54,660     117 |     struct unary_function
2025-09-08T04:16:54,660         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:54,676   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T04:16:54,676   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:54,676     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T04:16:54,676         |                                            ^~~~~~~~~~~~~~
2025-09-08T04:16:54,676   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:54,677     117 |     struct unary_function
2025-09-08T04:16:54,677         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:59,261   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:16:59,261                    from ./base//sbml/Model.h:446,
2025-09-08T04:16:59,261                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42,
2025-09-08T04:16:59,261                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2025-09-08T04:16:59,261   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:59,261      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:16:59,261         |                           ^~~~~~~~~~~~~~
2025-09-08T04:16:59,262   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:16:59,262                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:16:59,262                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:16:59,262                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:41:
2025-09-08T04:16:59,262   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:59,263     117 |     struct unary_function
2025-09-08T04:16:59,263         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:59,584   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:16:59,584                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47:
2025-09-08T04:16:59,584   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:59,584     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:16:59,584         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:16:59,584   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:59,584     117 |     struct unary_function
2025-09-08T04:16:59,584         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:59,591   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:59,592     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:16:59,592         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:16:59,592   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:59,592     117 |     struct unary_function
2025-09-08T04:16:59,592         |            ^~~~~~~~~~~~~~
2025-09-08T04:16:59,617   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T04:16:59,617   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:16:59,617     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T04:16:59,617         |                                            ^~~~~~~~~~~~~~
2025-09-08T04:16:59,617   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:16:59,617     117 |     struct unary_function
2025-09-08T04:16:59,618         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:05,133   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:17:05,134                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:17:05,134                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:17:05,134                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2025-09-08T04:17:05,134                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:48,
2025-09-08T04:17:05,134                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2025-09-08T04:17:05,134   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:05,134      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:17:05,134         |                           ^~~~~~~~~~~~~~
2025-09-08T04:17:05,135   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:17:05,135                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:17:05,135                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:17:05,135                    from /usr/include/c++/14/ios:44,
2025-09-08T04:17:05,135                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:17:05,136                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2025-09-08T04:17:05,136   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:05,136     117 |     struct unary_function
2025-09-08T04:17:05,136         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:09,082   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:17:09,082                    from ./base//sbml/Model.h:446,
2025-09-08T04:17:09,082                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44,
2025-09-08T04:17:09,083                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2025-09-08T04:17:09,083   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:09,083      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:17:09,083         |                           ^~~~~~~~~~~~~~
2025-09-08T04:17:09,084   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:17:09,084                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:17:09,084                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:17:09,084                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:43:
2025-09-08T04:17:09,084   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:09,084     117 |     struct unary_function
2025-09-08T04:17:09,084         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:09,393   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:17:09,394                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:49:
2025-09-08T04:17:09,394   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:09,394     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:09,394         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:17:09,394   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:09,394     117 |     struct unary_function
2025-09-08T04:17:09,394         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:09,401   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:09,402     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:09,402         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:17:09,402   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:09,402     117 |     struct unary_function
2025-09-08T04:17:09,402         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:09,427   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2025-09-08T04:17:09,427   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:09,427     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:09,427         |                                            ^~~~~~~~~~~~~~
2025-09-08T04:17:09,427   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:09,428     117 |     struct unary_function
2025-09-08T04:17:09,428         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:14,867   In file included from ./base//sbml/packages/fbc/sbml/Association.h:51,
2025-09-08T04:17:14,867                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2025-09-08T04:17:14,867   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:14,867      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:17:14,868         |                           ^~~~~~~~~~~~~~
2025-09-08T04:17:14,868   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:17:14,868                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:17:14,868                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:17:14,869                    from /usr/include/c++/14/ios:44,
2025-09-08T04:17:14,869                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:17:14,869                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:17:14,869                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2025-09-08T04:17:14,869   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:14,869     117 |     struct unary_function
2025-09-08T04:17:14,869         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:22,615   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:71,
2025-09-08T04:17:22,616                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2025-09-08T04:17:22,616   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:22,616      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:17:22,616         |                           ^~~~~~~~~~~~~~
2025-09-08T04:17:22,617   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:17:22,617                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:17:22,617                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:17:22,617                    from /usr/include/c++/14/ios:44,
2025-09-08T04:17:22,617                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:17:22,617                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:17:22,617                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2025-09-08T04:17:22,617   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:22,617     117 |     struct unary_function
2025-09-08T04:17:22,618         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:29,833   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:48,
2025-09-08T04:17:29,833                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2025-09-08T04:17:29,833   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:29,833      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:17:29,833         |                           ^~~~~~~~~~~~~~
2025-09-08T04:17:29,834   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:17:29,834                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:17:29,834                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:17:29,834                    from /usr/include/c++/14/ios:44,
2025-09-08T04:17:29,835                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:17:29,835                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:17:29,835                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2025-09-08T04:17:29,835   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:29,835     117 |     struct unary_function
2025-09-08T04:17:29,835         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:30,292   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:30,292     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:30,292         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:17:30,292   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:30,292     117 |     struct unary_function
2025-09-08T04:17:30,293         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:36,455   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:46,
2025-09-08T04:17:36,455                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2025-09-08T04:17:36,455   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:36,455      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:17:36,456         |                           ^~~~~~~~~~~~~~
2025-09-08T04:17:36,456   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:17:36,456                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:17:36,457                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:17:36,457                    from /usr/include/c++/14/ios:44,
2025-09-08T04:17:36,457                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:17:36,457                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:17:36,457                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2025-09-08T04:17:36,457   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:36,457     117 |     struct unary_function
2025-09-08T04:17:36,457         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:36,934   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:36,935     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:36,935         |                                            ^~~~~~~~~~~~~~
2025-09-08T04:17:36,935   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:36,935     117 |     struct unary_function
2025-09-08T04:17:36,935         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:42,867   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2025-09-08T04:17:42,867                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2025-09-08T04:17:42,867   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:42,867      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:17:42,867         |                           ^~~~~~~~~~~~~~
2025-09-08T04:17:42,868   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:17:42,868                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:17:42,868                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:17:42,868                    from /usr/include/c++/14/ios:44,
2025-09-08T04:17:42,868                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:17:42,869                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:17:42,869                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2025-09-08T04:17:42,869   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:42,869     117 |     struct unary_function
2025-09-08T04:17:42,869         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:43,325   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70:
2025-09-08T04:17:43,325   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:43,325     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:43,325         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:17:43,325   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:43,325     117 |     struct unary_function
2025-09-08T04:17:43,325         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:43,332   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:43,333     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:43,333         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:17:43,333   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:43,333     117 |     struct unary_function
2025-09-08T04:17:43,333         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:50,455   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:17:50,455                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:17:50,455                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:17:50,455                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:17:50,455                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:17:50,456                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35,
2025-09-08T04:17:50,456                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2025-09-08T04:17:50,456   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:50,456      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:17:50,456         |                           ^~~~~~~~~~~~~~
2025-09-08T04:17:50,457   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:17:50,457                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:17:50,457                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:17:50,457                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:34:
2025-09-08T04:17:50,457   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:50,457     117 |     struct unary_function
2025-09-08T04:17:50,457         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:50,774   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:17:50,774                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T04:17:50,774                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T04:17:50,774                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2025-09-08T04:17:50,774   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:50,774     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:50,774         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:17:50,775   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:50,775     117 |     struct unary_function
2025-09-08T04:17:50,775         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:50,782   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:50,782     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:50,782         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:17:50,782   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:50,782     117 |     struct unary_function
2025-09-08T04:17:50,782         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:50,798   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T04:17:50,798   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:50,799     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:50,799         |                                            ^~~~~~~~~~~~~~
2025-09-08T04:17:50,799   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:50,799     117 |     struct unary_function
2025-09-08T04:17:50,799         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:50,810   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:17:50,810   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:109:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:17:50,810     109 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T04:17:50,810         |              ^
2025-09-08T04:17:50,810   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:107:68: note: ‘props’ declared here
2025-09-08T04:17:50,810     107 | CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:17:50,810         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:17:51,500   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:109:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:17:51,500     109 |   if (&props == NULL || !props.hasOption("convert cobra"))
2025-09-08T04:17:51,500         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:17:57,977   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:17:57,977                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:17:57,977                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:17:57,977                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:17:57,977                    from ./base//sbml/conversion/SBMLConverter.h:58,
2025-09-08T04:17:57,978                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35,
2025-09-08T04:17:57,978                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2025-09-08T04:17:57,978   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:57,978      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:17:57,978         |                           ^~~~~~~~~~~~~~
2025-09-08T04:17:57,979   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:17:57,979                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:17:57,979                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:17:57,979                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:34:
2025-09-08T04:17:57,979   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:57,979     117 |     struct unary_function
2025-09-08T04:17:57,979         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:58,296   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:17:58,296                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T04:17:58,296                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T04:17:58,296                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2025-09-08T04:17:58,296   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:58,296     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:58,297         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:17:58,297   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:58,297     117 |     struct unary_function
2025-09-08T04:17:58,297         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:58,303   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:58,304     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:58,304         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:17:58,304   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:58,304     117 |     struct unary_function
2025-09-08T04:17:58,304         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:58,323   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T04:17:58,324   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:17:58,324     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T04:17:58,324         |                                            ^~~~~~~~~~~~~~
2025-09-08T04:17:58,324   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:17:58,324     117 |     struct unary_function
2025-09-08T04:17:58,324         |            ^~~~~~~~~~~~~~
2025-09-08T04:17:58,336   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2025-09-08T04:17:58,337   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2025-09-08T04:17:58,337      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T04:17:58,337         |              ^
2025-09-08T04:17:58,337   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:97:70: note: ‘props’ declared here
2025-09-08T04:17:58,337      97 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2025-09-08T04:17:58,337         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:17:59,009   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:17:59,009      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2025-09-08T04:17:59,009         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:18:04,280   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:18:04,280                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:18:04,280                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:18:04,281                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2025-09-08T04:18:04,281                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2025-09-08T04:18:04,281   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:04,281      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:04,281         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:04,282   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:04,282                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2025-09-08T04:18:04,282                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2025-09-08T04:18:04,282                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2025-09-08T04:18:04,282   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:04,282     117 |     struct unary_function
2025-09-08T04:18:04,282         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:04,759   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:18:04,759                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T04:18:04,759   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:04,759     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:04,759         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:18:04,760   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:04,760     117 |     struct unary_function
2025-09-08T04:18:04,760         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:04,767   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:04,767     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:04,767         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:18:04,767   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:04,767     117 |     struct unary_function
2025-09-08T04:18:04,767         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:08,348   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:18:08,348                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:18:08,348                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:18:08,348                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2025-09-08T04:18:08,348                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2025-09-08T04:18:08,348   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:08,348      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:08,348         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:08,349   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:08,349                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2025-09-08T04:18:08,349                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2025-09-08T04:18:08,349                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2025-09-08T04:18:08,350   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:08,350     117 |     struct unary_function
2025-09-08T04:18:08,350         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:11,822   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:18:11,822                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:18:11,822                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:18:11,822                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2025-09-08T04:18:11,822   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:11,822      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:11,822         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:11,823   In file included from /usr/include/c++/14/functional:49,
2025-09-08T04:18:11,823                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2025-09-08T04:18:11,823   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:11,824     117 |     struct unary_function
2025-09-08T04:18:11,824         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:12,307   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:18:12,308                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T04:18:12,308                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2025-09-08T04:18:12,308                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2025-09-08T04:18:12,308   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:12,308     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:12,308         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:18:12,308   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:12,308     117 |     struct unary_function
2025-09-08T04:18:12,309         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:12,315   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:12,316     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:12,316         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:18:12,316   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:12,316     117 |     struct unary_function
2025-09-08T04:18:12,316         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:12,332   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T04:18:12,332   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:12,332     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:12,332         |                                            ^~~~~~~~~~~~~~
2025-09-08T04:18:12,332   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:12,332     117 |     struct unary_function
2025-09-08T04:18:12,333         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:12,339   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:12,339      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T04:18:12,339         |                       ^~~~~~~~~~~~~~
2025-09-08T04:18:12,339   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:12,339     117 |     struct unary_function
2025-09-08T04:18:12,339         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:12,479   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T04:18:12,479   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T04:18:12,479     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T04:18:12,479         |            ^
2025-09-08T04:18:12,480   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2025-09-08T04:18:12,480     288 |   virtual bool visit (const SBase &x)
2025-09-08T04:18:12,480         |                       ~~~~~~~~~~~~~^
2025-09-08T04:18:12,491   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T04:18:12,492   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T04:18:12,492     383 |   if (&d == NULL) return 0;
2025-09-08T04:18:12,492         |          ^
2025-09-08T04:18:12,492   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2025-09-08T04:18:12,492     381 | FbcValidator::validate (const SBMLDocument& d)
2025-09-08T04:18:12,492         |                         ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T04:18:12,494   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T04:18:12,494   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T04:18:12,494     413 |   if (&filename == NULL) return 0;
2025-09-08T04:18:12,495         |                 ^
2025-09-08T04:18:12,495   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2025-09-08T04:18:12,495     411 | FbcValidator::validate (const std::string& filename)
2025-09-08T04:18:12,495         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:18:13,179   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2025-09-08T04:18:13,179   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:18:13,179     383 |   if (&d == NULL) return 0;
2025-09-08T04:18:13,179         |   ^~
2025-09-08T04:18:13,190   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2025-09-08T04:18:13,190   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:18:13,190     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2025-09-08T04:18:13,190         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:18:13,202   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2025-09-08T04:18:13,202   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:18:13,202     413 |   if (&filename == NULL) return 0;
2025-09-08T04:18:13,202         |   ^~
2025-09-08T04:18:17,025   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:18:17,025                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:18:17,025                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:18:17,025                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2025-09-08T04:18:17,025   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:17,025      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:17,025         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:17,026   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:17,026                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:18:17,026   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:17,026     117 |     struct unary_function
2025-09-08T04:18:17,027         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:17,503   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:18:17,503                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2025-09-08T04:18:17,503   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:17,503     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:17,503         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:18:17,504   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:17,504     117 |     struct unary_function
2025-09-08T04:18:17,504         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:17,511   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:17,511     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:17,511         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:18:17,511   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:17,511     117 |     struct unary_function
2025-09-08T04:18:17,512         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:20,589   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:18:20,590                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:18:20,590                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:18:20,590                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2025-09-08T04:18:20,590   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:20,590      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:20,590         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:20,591   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:20,591                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:18:20,591   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:20,591     117 |     struct unary_function
2025-09-08T04:18:20,591         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:24,143   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:18:24,143                    from ./base//sbml/Model.h:446,
2025-09-08T04:18:24,143                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2025-09-08T04:18:24,143   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:24,143      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:24,143         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:24,144   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:24,144                    from ./base//sbml/Model.h:444:
2025-09-08T04:18:24,144   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:24,144     117 |     struct unary_function
2025-09-08T04:18:24,144         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:24,519   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:18:24,519                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T04:18:24,519                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2025-09-08T04:18:24,519   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:24,519     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:24,519         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:18:24,520   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:24,520     117 |     struct unary_function
2025-09-08T04:18:24,520         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:24,527   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:24,527     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:24,527         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:18:24,527   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:24,527     117 |     struct unary_function
2025-09-08T04:18:24,527         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:24,552   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T04:18:24,552   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:24,552     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:24,552         |                                            ^~~~~~~~~~~~~~
2025-09-08T04:18:24,553   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:24,553     117 |     struct unary_function
2025-09-08T04:18:24,553         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:28,136   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:18:28,136                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:18:28,136                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:18:28,136                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2025-09-08T04:18:28,136                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2025-09-08T04:18:28,136   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:28,136      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:28,136         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:28,137   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:28,137                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2025-09-08T04:18:28,137   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:28,138     117 |     struct unary_function
2025-09-08T04:18:28,138         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:28,559   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2025-09-08T04:18:28,559                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2025-09-08T04:18:28,559                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2025-09-08T04:18:28,559   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:28,559     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:28,559         |                                          ^~~~~~~~~~~~~~
2025-09-08T04:18:28,560   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:28,560     117 |     struct unary_function
2025-09-08T04:18:28,560         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:28,567   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:28,567     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:28,567         |                                      ^~~~~~~~~~~~~~
2025-09-08T04:18:28,567   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:28,568     117 |     struct unary_function
2025-09-08T04:18:28,568         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:28,583   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2025-09-08T04:18:28,583   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:28,584     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2025-09-08T04:18:28,584         |                                            ^~~~~~~~~~~~~~
2025-09-08T04:18:28,584   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:28,584     117 |     struct unary_function
2025-09-08T04:18:28,584         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:33,136   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:18:33,136                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:18:33,136                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:18:33,137                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:18:33,137                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:18:33,137                    from ./base//sbml/extension/SBMLExtensionRegister.h:51,
2025-09-08T04:18:33,137                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2025-09-08T04:18:33,137   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:33,137      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:33,137         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:33,137   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:33,137                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:18:33,138                    from ./base//sbml/SBMLError.h:457,
2025-09-08T04:18:33,138                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T04:18:33,138   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:33,138     117 |     struct unary_function
2025-09-08T04:18:33,138         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:33,444   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:18:33,445                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:18:33,445                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T04:18:33,445                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:41:
2025-09-08T04:18:33,445   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:33,445     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:33,445         |                             ^~~~~~~~
2025-09-08T04:18:33,445   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:18:33,445     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:18:33,445         |                              ^~~~~~~~
2025-09-08T04:18:33,447   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:33,447     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:33,447         |                             ^~~~~~~~
2025-09-08T04:18:33,447   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:18:33,448   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:18:33,448     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:18:33,448         |                          ^~~~~~~~
2025-09-08T04:18:33,456   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:33,456     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:33,456         |                             ^~~~~~~~
2025-09-08T04:18:33,456   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:18:33,456                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:18:33,457   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:18:33,457     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:18:33,457         |                                   ^~~~~~~~
2025-09-08T04:18:33,461   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:33,461     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:33,461         |                             ^~~~~~~~
2025-09-08T04:18:33,461   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:18:33,461     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:18:33,462         |                           ^~~~~~~~
2025-09-08T04:18:33,464   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:33,464     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:33,464         |                             ^~~~~~~~
2025-09-08T04:18:33,465   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:18:33,465   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:18:33,465     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:18:33,465         |                      ^~~~~~~~
2025-09-08T04:18:38,411   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:18:38,411                    from ./base//sbml/Model.h:446,
2025-09-08T04:18:38,411                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49,
2025-09-08T04:18:38,412                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2025-09-08T04:18:38,412   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:38,412      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:38,412         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:38,413   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:38,413                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:18:38,413                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:18:38,413                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:48:
2025-09-08T04:18:38,413   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:38,413     117 |     struct unary_function
2025-09-08T04:18:38,413         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:38,740   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:18:38,740                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:18:38,741                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54:
2025-09-08T04:18:38,741   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:38,741     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:38,741         |                             ^~~~~~~~
2025-09-08T04:18:38,741   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:18:38,741     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:18:38,741         |                              ^~~~~~~~
2025-09-08T04:18:38,744   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:38,744     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:38,744         |                             ^~~~~~~~
2025-09-08T04:18:38,745   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:18:38,745   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:18:38,745     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:18:38,745         |                          ^~~~~~~~
2025-09-08T04:18:38,755   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:38,755     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:38,755         |                             ^~~~~~~~
2025-09-08T04:18:38,755   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:18:38,755                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:18:38,755   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:18:38,755     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:18:38,756         |                                   ^~~~~~~~
2025-09-08T04:18:38,761   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:38,761     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:38,761         |                             ^~~~~~~~
2025-09-08T04:18:38,761   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:18:38,761     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:18:38,762         |                           ^~~~~~~~
2025-09-08T04:18:38,765   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:38,765     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:38,765         |                             ^~~~~~~~
2025-09-08T04:18:38,765   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:18:38,766   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:18:38,766     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:18:38,766         |                      ^~~~~~~~
2025-09-08T04:18:43,012   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:18:43,013                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:18:43,013                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:18:43,013                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2025-09-08T04:18:43,013                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:58,
2025-09-08T04:18:43,013                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2025-09-08T04:18:43,013   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:43,013      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:43,013         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:43,014   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:43,014                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:18:43,014                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:18:43,014                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53:
2025-09-08T04:18:43,014   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:43,015     117 |     struct unary_function
2025-09-08T04:18:43,015         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:47,416   In file included from ./base//sbml/SpeciesReference.h:260,
2025-09-08T04:18:47,417                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45,
2025-09-08T04:18:47,417                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2025-09-08T04:18:47,417   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:47,417      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:47,417         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:47,418   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:47,418                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:18:47,418                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:18:47,418                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:44:
2025-09-08T04:18:47,418   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:47,418     117 |     struct unary_function
2025-09-08T04:18:47,418         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:47,889   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:18:47,889                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:18:47,889                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:50:
2025-09-08T04:18:47,889   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:47,889     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:47,889         |                             ^~~~~~~~
2025-09-08T04:18:47,889   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:18:47,889     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:18:47,890         |                              ^~~~~~~~
2025-09-08T04:18:47,891   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:47,891     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:47,891         |                             ^~~~~~~~
2025-09-08T04:18:47,892   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:18:47,892   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:18:47,892     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:18:47,892         |                          ^~~~~~~~
2025-09-08T04:18:47,900   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:47,900     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:47,900         |                             ^~~~~~~~
2025-09-08T04:18:47,901   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:18:47,901                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:18:47,901   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:18:47,901     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:18:47,901         |                                   ^~~~~~~~
2025-09-08T04:18:47,905   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:47,905     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:47,905         |                             ^~~~~~~~
2025-09-08T04:18:47,906   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:18:47,906     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:18:47,906         |                           ^~~~~~~~
2025-09-08T04:18:47,908   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:47,909     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:47,909         |                             ^~~~~~~~
2025-09-08T04:18:47,909   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:18:47,909   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:18:47,909     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:18:47,909         |                      ^~~~~~~~
2025-09-08T04:18:51,470   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:18:51,470                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:18:51,470                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:18:51,471                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:18:51,471                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:18:51,471                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:18:51,471                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:18:51,471                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T04:18:51,471                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2025-09-08T04:18:51,471   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:51,471      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:51,471         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:51,472   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:51,472                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2025-09-08T04:18:51,472   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:51,472     117 |     struct unary_function
2025-09-08T04:18:51,472         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:57,603   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:18:57,604                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:18:57,604                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:18:57,604                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:18:57,604                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:18:57,604                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:18:57,604                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:18:57,604                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T04:18:57,604                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T04:18:57,604                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:18:57,605                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2025-09-08T04:18:57,605   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:18:57,605      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:18:57,605         |                           ^~~~~~~~~~~~~~
2025-09-08T04:18:57,605   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:18:57,605                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2025-09-08T04:18:57,606   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:18:57,606     117 |     struct unary_function
2025-09-08T04:18:57,606         |            ^~~~~~~~~~~~~~
2025-09-08T04:18:57,910   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:57,910     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:57,910         |                             ^~~~~~~~
2025-09-08T04:18:57,910   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:18:57,911     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:18:57,911         |                              ^~~~~~~~
2025-09-08T04:18:57,913   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:57,913     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:57,913         |                             ^~~~~~~~
2025-09-08T04:18:57,914   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60,
2025-09-08T04:18:57,914                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:33:
2025-09-08T04:18:57,914   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:18:57,914     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:18:57,914         |                          ^~~~~~~~
2025-09-08T04:18:57,923   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:57,923     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:57,924         |                             ^~~~~~~~
2025-09-08T04:18:57,924   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:18:57,924                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:18:57,924   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:18:57,924     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:18:57,924         |                                   ^~~~~~~~
2025-09-08T04:18:57,929   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:57,930     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:57,930         |                             ^~~~~~~~
2025-09-08T04:18:57,930   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:18:57,930     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:18:57,930         |                           ^~~~~~~~
2025-09-08T04:18:57,933   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:18:57,934     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:18:57,934         |                             ^~~~~~~~
2025-09-08T04:18:57,934   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:18:57,934   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:18:57,934     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:18:57,934         |                      ^~~~~~~~
2025-09-08T04:19:03,238   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:19:03,238                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:19:03,238                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:19:03,238                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:19:03,238                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:19:03,238                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:19:03,239                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:19:03,239                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2025-09-08T04:19:03,239                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:55,
2025-09-08T04:19:03,239                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2025-09-08T04:19:03,239   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:19:03,239      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:19:03,239         |                           ^~~~~~~~~~~~~~
2025-09-08T04:19:03,240   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:19:03,240                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:53:
2025-09-08T04:19:03,240   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:19:03,240     117 |     struct unary_function
2025-09-08T04:19:03,240         |            ^~~~~~~~~~~~~~
2025-09-08T04:19:03,537   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:03,538     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T04:19:03,538         |                        ^~~~~~~~
2025-09-08T04:19:03,538   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T04:19:03,538     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T04:19:03,538         |                        ^~~~~~~~
2025-09-08T04:19:08,241   In file included from ./base//sbml/packages/layout/sbml/Curve.h:68,
2025-09-08T04:19:08,242                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2025-09-08T04:19:08,242   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:19:08,242      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:19:08,242         |                           ^~~~~~~~~~~~~~
2025-09-08T04:19:08,243   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:19:08,243                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:19:08,243                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:19:08,243                    from /usr/include/c++/14/ios:44,
2025-09-08T04:19:08,243                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:19:08,243                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:19:08,243                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2025-09-08T04:19:08,243   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:19:08,243     117 |     struct unary_function
2025-09-08T04:19:08,243         |            ^~~~~~~~~~~~~~
2025-09-08T04:19:08,777   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69:
2025-09-08T04:19:08,777   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:08,777     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T04:19:08,778         |                        ^~~~~~~~
2025-09-08T04:19:08,778   In file included from ./base/sbml/packages/layout/sbml/Curve.cpp:35:
2025-09-08T04:19:08,778   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T04:19:08,778     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T04:19:08,778         |                        ^~~~~~~~
2025-09-08T04:19:14,312   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:19:14,312                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:19:14,312                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:19:14,312                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:19:14,312                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:19:14,312                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:19:14,313                    from ./base//sbml/packages/layout/sbml/Dimensions.h:56,
2025-09-08T04:19:14,313                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2025-09-08T04:19:14,313   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:19:14,313      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:19:14,313         |                           ^~~~~~~~~~~~~~
2025-09-08T04:19:14,314   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:19:14,314                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:19:14,314                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:19:14,314                    from /usr/include/c++/14/ios:44,
2025-09-08T04:19:14,314                    from /usr/include/c++/14/istream:40,
2025-09-08T04:19:14,314                    from /usr/include/c++/14/sstream:40,
2025-09-08T04:19:14,314                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2025-09-08T04:19:14,314   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:19:14,314     117 |     struct unary_function
2025-09-08T04:19:14,314         |            ^~~~~~~~~~~~~~
2025-09-08T04:19:19,738   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:54,
2025-09-08T04:19:19,739                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2025-09-08T04:19:19,739   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:19:19,739      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:19:19,739         |                           ^~~~~~~~~~~~~~
2025-09-08T04:19:19,740   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:19:19,740                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:52:
2025-09-08T04:19:19,740   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:19:19,740     117 |     struct unary_function
2025-09-08T04:19:19,740         |            ^~~~~~~~~~~~~~
2025-09-08T04:19:20,271   In file included from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:54,
2025-09-08T04:19:20,271                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:56:
2025-09-08T04:19:20,271   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:20,271     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:20,271         |                             ^~~~~~~~
2025-09-08T04:19:20,271   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T04:19:20,272     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T04:19:20,272         |                            ^~~~~~~~
2025-09-08T04:19:20,277   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:20,277     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:20,277         |                             ^~~~~~~~
2025-09-08T04:19:20,278   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T04:19:20,278     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T04:19:20,278         |                          ^~~~~~~~
2025-09-08T04:19:20,281   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:20,281     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:20,281         |                             ^~~~~~~~
2025-09-08T04:19:20,281   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:34:
2025-09-08T04:19:20,282   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:19:20,282     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:19:20,282         |                          ^~~~~~~~
2025-09-08T04:19:20,284   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:20,285     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:20,285         |                             ^~~~~~~~
2025-09-08T04:19:20,285   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:35:
2025-09-08T04:19:20,285   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:19:20,285     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:19:20,285         |                      ^~~~~~~~
2025-09-08T04:19:20,288   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:20,288     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:20,288         |                             ^~~~~~~~
2025-09-08T04:19:20,289   In file included from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:36:
2025-09-08T04:19:20,289   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:19:20,289     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:19:20,289         |                              ^~~~~~~~
2025-09-08T04:19:20,292   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:20,293     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:20,293         |                             ^~~~~~~~
2025-09-08T04:19:20,293   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:19:20,293                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:37:
2025-09-08T04:19:20,293   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:19:20,294     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:19:20,294         |                                   ^~~~~~~~
2025-09-08T04:19:20,299   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:20,299     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:20,299         |                             ^~~~~~~~
2025-09-08T04:19:20,299   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:19:20,299     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:19:20,300         |                           ^~~~~~~~
2025-09-08T04:19:27,591   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:19:27,591                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:19:27,591                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:19:27,591                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:19:27,591                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:19:27,591                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:19:27,591                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:19:27,591                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T04:19:27,592                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T04:19:27,592                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T04:19:27,592                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2025-09-08T04:19:27,592   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:19:27,592      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:19:27,592         |                           ^~~~~~~~~~~~~~
2025-09-08T04:19:27,593   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:19:27,593                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:19:27,593                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:19:27,593                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:19:27,593                    from ./base//sbml/SBase.h:145,
2025-09-08T04:19:27,593                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T04:19:27,593   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:19:27,593     117 |     struct unary_function
2025-09-08T04:19:27,594         |            ^~~~~~~~~~~~~~
2025-09-08T04:19:27,898   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:27,898     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:27,899         |                             ^~~~~~~~
2025-09-08T04:19:27,899   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:19:27,899                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T04:19:27,899                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T04:19:27,899                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:41:
2025-09-08T04:19:27,899   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:19:27,899     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:19:27,899         |                              ^~~~~~~~
2025-09-08T04:19:27,902   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:27,902     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:27,902         |                             ^~~~~~~~
2025-09-08T04:19:27,903   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:19:27,903   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:19:27,903     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:19:27,903         |                          ^~~~~~~~
2025-09-08T04:19:27,912   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:27,912     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:27,912         |                             ^~~~~~~~
2025-09-08T04:19:27,913   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:19:27,913                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:19:27,913   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:19:27,913     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:19:27,913         |                                   ^~~~~~~~
2025-09-08T04:19:27,918   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:27,918     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:27,918         |                             ^~~~~~~~
2025-09-08T04:19:27,919   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:19:27,919     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:19:27,919         |                           ^~~~~~~~
2025-09-08T04:19:27,922   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:27,922     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:27,922         |                             ^~~~~~~~
2025-09-08T04:19:27,923   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:19:27,923   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:19:27,923     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:19:27,923         |                      ^~~~~~~~
2025-09-08T04:19:27,944   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T04:19:27,944                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T04:19:27,944   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:27,944     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T04:19:27,944         |                        ^~~~~~~~
2025-09-08T04:19:27,944   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T04:19:27,945   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T04:19:27,945     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T04:19:27,945         |                        ^~~~~~~~
2025-09-08T04:19:27,948   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:27,948     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:27,949         |                             ^~~~~~~~
2025-09-08T04:19:27,949   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T04:19:27,949   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T04:19:27,949     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T04:19:27,949         |                            ^~~~~~~~
2025-09-08T04:19:27,954   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:27,955     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:27,955         |                             ^~~~~~~~
2025-09-08T04:19:27,955   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T04:19:27,955   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T04:19:27,955     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T04:19:27,955         |                          ^~~~~~~~
2025-09-08T04:19:27,981   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T04:19:27,981   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2025-09-08T04:19:27,981     373 |   if (&id != NULL && id.empty())
2025-09-08T04:19:27,981         |           ^
2025-09-08T04:19:27,982   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2025-09-08T04:19:27,982     371 | int GraphicalObject::setId(const std::string& id)
2025-09-08T04:19:27,982         |                            ~~~~~~~~~~~~~~~~~~~^~
2025-09-08T04:19:27,983   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T04:19:27,983   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2025-09-08T04:19:27,983     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T04:19:27,984         |               ^
2025-09-08T04:19:27,984   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2025-09-08T04:19:27,984     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2025-09-08T04:19:27,984         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:19:28,539   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2025-09-08T04:19:28,540   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:19:28,540     373 |   if (&id != NULL && id.empty())
2025-09-08T04:19:28,540         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2025-09-08T04:19:28,540   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2025-09-08T04:19:28,540   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:19:28,540     419 |   if (&metaid != NULL && metaid.empty())
2025-09-08T04:19:28,540         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2025-09-08T04:19:36,522   In file included from ./base//sbml/packages/layout/sbml/Layout.h:57,
2025-09-08T04:19:36,522                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2025-09-08T04:19:36,522   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:19:36,522      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:19:36,522         |                           ^~~~~~~~~~~~~~
2025-09-08T04:19:36,523   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:19:36,523                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:19:36,523                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:19:36,523                    from /usr/include/c++/14/ios:44,
2025-09-08T04:19:36,523                    from /usr/include/c++/14/ostream:40,
2025-09-08T04:19:36,523                    from /usr/include/c++/14/iostream:41,
2025-09-08T04:19:36,524                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2025-09-08T04:19:36,524   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:19:36,524     117 |     struct unary_function
2025-09-08T04:19:36,524         |            ^~~~~~~~~~~~~~
2025-09-08T04:19:37,056   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:19:37,056                    from ./base//sbml/packages/layout/sbml/Layout.h:59:
2025-09-08T04:19:37,056   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:37,056     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:37,056         |                             ^~~~~~~~
2025-09-08T04:19:37,057   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:19:37,057     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:19:37,057         |                              ^~~~~~~~
2025-09-08T04:19:37,059   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:37,060     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:37,060         |                             ^~~~~~~~
2025-09-08T04:19:37,060   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:19:37,060   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:19:37,060     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:19:37,060         |                          ^~~~~~~~
2025-09-08T04:19:37,069   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:37,070     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:37,070         |                             ^~~~~~~~
2025-09-08T04:19:37,070   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:19:37,070                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:19:37,070   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:19:37,070     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:19:37,071         |                                   ^~~~~~~~
2025-09-08T04:19:37,076   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:37,076     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:37,076         |                             ^~~~~~~~
2025-09-08T04:19:37,076   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:19:37,076     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:19:37,076         |                           ^~~~~~~~
2025-09-08T04:19:37,080   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:37,080     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:37,080         |                             ^~~~~~~~
2025-09-08T04:19:37,080   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:19:37,080   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:19:37,081     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:19:37,081         |                      ^~~~~~~~
2025-09-08T04:19:37,096   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:37,097     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:37,097         |                             ^~~~~~~~
2025-09-08T04:19:37,097   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:56,
2025-09-08T04:19:37,097                    from ./base/sbml/packages/layout/sbml/Layout.cpp:37:
2025-09-08T04:19:37,097   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T04:19:37,097     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T04:19:37,098         |                            ^~~~~~~~
2025-09-08T04:19:37,103   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:19:37,103     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:19:37,103         |                             ^~~~~~~~
2025-09-08T04:19:37,103   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T04:19:37,104     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T04:19:37,104         |                          ^~~~~~~~
2025-09-08T04:19:37,148   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2025-09-08T04:19:37,148   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:19:37,148     453 |   if (&(name) == NULL)
2025-09-08T04:19:37,148         |               ^
2025-09-08T04:19:37,148   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2025-09-08T04:19:37,148     448 | int Layout::setName (const std::string& name)
2025-09-08T04:19:37,148         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:19:37,845   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:19:37,845     453 |   if (&(name) == NULL)
2025-09-08T04:19:37,845         |   ^~
2025-09-08T04:19:49,286   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:19:49,286                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:19:49,286                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:19:49,286                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:19:49,286                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:19:49,286                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:19:49,286                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:19:49,287                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2025-09-08T04:19:49,287                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2025-09-08T04:19:49,287   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:19:49,287      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:19:49,287         |                           ^~~~~~~~~~~~~~
2025-09-08T04:19:49,287   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:19:49,287                    from ./base//sbml/packages/layout/sbml/LineSegment.h:51:
2025-09-08T04:19:49,287   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:19:49,287     117 |     struct unary_function
2025-09-08T04:19:49,288         |            ^~~~~~~~~~~~~~
2025-09-08T04:19:55,101   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:19:55,102                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:19:55,102                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:19:55,102                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:19:55,102                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:19:55,102                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:19:55,102                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:19:55,102                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2025-09-08T04:19:55,102   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:19:55,102      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:19:55,102         |                           ^~~~~~~~~~~~~~
2025-09-08T04:19:55,103   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:19:55,103                    from /usr/include/c++/14/bits/locale_classes.h:40,
2025-09-08T04:19:55,103                    from /usr/include/c++/14/bits/ios_base.h:41,
2025-09-08T04:19:55,103                    from /usr/include/c++/14/ios:44,
2025-09-08T04:19:55,103                    from /usr/include/c++/14/istream:40,
2025-09-08T04:19:55,103                    from /usr/include/c++/14/sstream:40,
2025-09-08T04:19:55,103                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2025-09-08T04:19:55,103   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:19:55,103     117 |     struct unary_function
2025-09-08T04:19:55,104         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:00,609   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:60,
2025-09-08T04:20:00,610                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2025-09-08T04:20:00,610   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:00,610      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:00,610         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:00,610   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:00,610                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:58:
2025-09-08T04:20:00,610   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:00,610     117 |     struct unary_function
2025-09-08T04:20:00,610         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:01,164   In file included from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:54,
2025-09-08T04:20:01,164                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62:
2025-09-08T04:20:01,164   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:01,164     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:01,164         |                             ^~~~~~~~
2025-09-08T04:20:01,165   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:20:01,165     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:20:01,165         |                                   ^~~~~~~~
2025-09-08T04:20:01,169   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:01,169     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:01,169         |                             ^~~~~~~~
2025-09-08T04:20:01,169   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:20:01,169     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:20:01,170         |                           ^~~~~~~~
2025-09-08T04:20:01,172   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:01,172     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:01,172         |                             ^~~~~~~~
2025-09-08T04:20:01,173   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:20:01,173                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:36:
2025-09-08T04:20:01,173   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:20:01,173     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:20:01,173         |                              ^~~~~~~~
2025-09-08T04:20:01,175   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:01,175     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:01,175         |                             ^~~~~~~~
2025-09-08T04:20:01,175   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:20:01,175   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:20:01,175     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:20:01,175         |                          ^~~~~~~~
2025-09-08T04:20:01,177   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:01,178     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:01,178         |                             ^~~~~~~~
2025-09-08T04:20:01,178   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:20:01,178   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:20:01,178     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:20:01,178         |                      ^~~~~~~~
2025-09-08T04:20:07,904   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:20:07,904                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:20:07,904                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:20:07,904                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:20:07,904                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:20:07,904                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:20:07,905                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:20:07,905                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T04:20:07,905                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T04:20:07,905                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:54,
2025-09-08T04:20:07,905                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2025-09-08T04:20:07,905   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:07,905      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:07,905         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:07,906   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:07,906                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:52:
2025-09-08T04:20:07,906   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:07,906     117 |     struct unary_function
2025-09-08T04:20:07,906         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:08,216   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:08,217     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:08,217         |                             ^~~~~~~~
2025-09-08T04:20:08,217   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T04:20:08,217     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T04:20:08,217         |                            ^~~~~~~~
2025-09-08T04:20:08,222   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:08,222     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:08,222         |                             ^~~~~~~~
2025-09-08T04:20:08,222   In file included from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:31:
2025-09-08T04:20:08,222   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T04:20:08,223     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T04:20:08,223         |                          ^~~~~~~~
2025-09-08T04:20:14,373   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:20:14,374                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:20:14,374                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:20:14,374                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:20:14,374                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:20:14,374                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:20:14,374                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:20:14,374                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T04:20:14,374                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T04:20:14,374                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49,
2025-09-08T04:20:14,374                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2025-09-08T04:20:14,374   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:14,375      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:14,375         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:14,375   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:14,375                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:48:
2025-09-08T04:20:14,376   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:14,376     117 |     struct unary_function
2025-09-08T04:20:14,376         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:14,678   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:14,678     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:14,678         |                             ^~~~~~~~
2025-09-08T04:20:14,679   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:20:14,679     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:20:14,679         |                          ^~~~~~~~
2025-09-08T04:20:14,682   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:14,682     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:14,682         |                             ^~~~~~~~
2025-09-08T04:20:14,682   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:20:14,682                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:31:
2025-09-08T04:20:14,682   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:20:14,683     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:20:14,683         |                              ^~~~~~~~
2025-09-08T04:20:14,692   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:14,692     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:14,692         |                             ^~~~~~~~
2025-09-08T04:20:14,692   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:20:14,693                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:20:14,693   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:20:14,693     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:20:14,693         |                                   ^~~~~~~~
2025-09-08T04:20:14,698   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:14,698     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:14,698         |                             ^~~~~~~~
2025-09-08T04:20:14,699   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:20:14,699     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:20:14,699         |                           ^~~~~~~~
2025-09-08T04:20:14,702   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:14,702     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:14,702         |                             ^~~~~~~~
2025-09-08T04:20:14,703   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:20:14,703   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:20:14,703     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:20:14,703         |                      ^~~~~~~~
2025-09-08T04:20:19,741   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:20:19,741                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:20:19,741                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:20:19,741                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:20:19,741                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:20:19,741                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:20:19,741                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:20:19,742                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T04:20:19,742                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T04:20:19,742                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:54,
2025-09-08T04:20:19,742                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2025-09-08T04:20:19,742   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:19,742      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:19,742         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:19,743   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:19,743                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:52:
2025-09-08T04:20:19,743   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:19,743     117 |     struct unary_function
2025-09-08T04:20:19,743         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:20,053   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:20,053     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:20,053         |                             ^~~~~~~~
2025-09-08T04:20:20,054   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:20:20,054     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:20:20,054         |                                   ^~~~~~~~
2025-09-08T04:20:20,057   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:20,057     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:20,057         |                             ^~~~~~~~
2025-09-08T04:20:20,058   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:20:20,058                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:31:
2025-09-08T04:20:20,058   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:20:20,058     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:20:20,058         |                              ^~~~~~~~
2025-09-08T04:20:20,061   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:20,061     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:20,061         |                             ^~~~~~~~
2025-09-08T04:20:20,061   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:20:20,061   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:20:20,062     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:20:20,062         |                          ^~~~~~~~
2025-09-08T04:20:20,066   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:20,066     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:20,067         |                             ^~~~~~~~
2025-09-08T04:20:20,067   In file included from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:20:20,067   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:20:20,067     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:20:20,067         |                           ^~~~~~~~
2025-09-08T04:20:20,070   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:20,071     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:20,071         |                             ^~~~~~~~
2025-09-08T04:20:20,071   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:20:20,071   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:20:20,071     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:20:20,071         |                      ^~~~~~~~
2025-09-08T04:20:26,376   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:20:26,376                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:20:26,377                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:20:26,377                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:20:26,377                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:20:26,377                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:20:26,377                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:20:26,377                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T04:20:26,377                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T04:20:26,377                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2025-09-08T04:20:26,377                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2025-09-08T04:20:26,377   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:26,377      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:26,378         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:26,378   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:26,378                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2025-09-08T04:20:26,378   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:26,379     117 |     struct unary_function
2025-09-08T04:20:26,379         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:26,681   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:26,681     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:26,681         |                             ^~~~~~~~
2025-09-08T04:20:26,681   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:20:26,681     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:20:26,681         |                      ^~~~~~~~
2025-09-08T04:20:26,684   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:26,684     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:26,684         |                             ^~~~~~~~
2025-09-08T04:20:26,685   In file included from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:20:26,685                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:33:
2025-09-08T04:20:26,685   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:20:26,685     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:20:26,685         |                              ^~~~~~~~
2025-09-08T04:20:26,688   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:26,688     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:26,688         |                             ^~~~~~~~
2025-09-08T04:20:26,688   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:20:26,689   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:20:26,689     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:20:26,689         |                          ^~~~~~~~
2025-09-08T04:20:26,698   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:26,698     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:26,698         |                             ^~~~~~~~
2025-09-08T04:20:26,698   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:20:26,699                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:20:26,699   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:20:26,699     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:20:26,699         |                                   ^~~~~~~~
2025-09-08T04:20:26,704   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:26,704     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:26,704         |                             ^~~~~~~~
2025-09-08T04:20:26,705   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:20:26,705     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:20:26,705         |                           ^~~~~~~~
2025-09-08T04:20:32,344   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:20:32,344                    from ./base//sbml/Model.h:446,
2025-09-08T04:20:32,344                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2025-09-08T04:20:32,344   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:32,344      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:32,344         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:32,345   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:32,345                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:20:32,345                    from ./base//sbml/xml/XMLToken.h:117,
2025-09-08T04:20:32,346                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2025-09-08T04:20:32,346   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:32,346     117 |     struct unary_function
2025-09-08T04:20:32,346         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:32,678   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:20:32,678                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:20:32,678                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:45:
2025-09-08T04:20:32,678   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:32,678     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:32,678         |                             ^~~~~~~~
2025-09-08T04:20:32,679   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:20:32,679     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:20:32,679         |                              ^~~~~~~~
2025-09-08T04:20:32,682   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:32,682     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:32,682         |                             ^~~~~~~~
2025-09-08T04:20:32,682   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:20:32,682   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:20:32,682     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:20:32,682         |                          ^~~~~~~~
2025-09-08T04:20:32,692   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:32,692     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:32,692         |                             ^~~~~~~~
2025-09-08T04:20:32,692   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:20:32,692                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:20:32,692   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:20:32,693     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:20:32,693         |                                   ^~~~~~~~
2025-09-08T04:20:32,698   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:32,698     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:32,698         |                             ^~~~~~~~
2025-09-08T04:20:32,698   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:20:32,698     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:20:32,699         |                           ^~~~~~~~
2025-09-08T04:20:32,702   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:32,702     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:32,702         |                             ^~~~~~~~
2025-09-08T04:20:32,702   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:20:32,702   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:20:32,703     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:20:32,703         |                      ^~~~~~~~
2025-09-08T04:20:36,816   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:20:36,817                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:20:36,817                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:20:36,817                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:20:36,817                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:20:36,817                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2025-09-08T04:20:36,817                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2025-09-08T04:20:36,817                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2025-09-08T04:20:36,817                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2025-09-08T04:20:36,817                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2025-09-08T04:20:36,817                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2025-09-08T04:20:36,818   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:36,818      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:36,818         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:36,818   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:36,819                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:20:36,819                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:20:36,819                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:20:36,819                    from ./base//sbml/SBase.h:145,
2025-09-08T04:20:36,819                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2025-09-08T04:20:36,819   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:36,819     117 |     struct unary_function
2025-09-08T04:20:36,819         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:40,546   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:20:40,546                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:20:40,546                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:20:40,546                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2025-09-08T04:20:40,546                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2025-09-08T04:20:40,547   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:40,547      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:40,547         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:40,547   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:40,547                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2025-09-08T04:20:40,548                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2025-09-08T04:20:40,548                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2025-09-08T04:20:40,548   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:40,548     117 |     struct unary_function
2025-09-08T04:20:40,548         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:41,058   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:20:41,059                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:20:41,059                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T04:20:41,059                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T04:20:41,059                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T04:20:41,059   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:41,059     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:41,059         |                             ^~~~~~~~
2025-09-08T04:20:41,059   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:20:41,060     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:20:41,060         |                              ^~~~~~~~
2025-09-08T04:20:41,062   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:41,062     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:41,063         |                             ^~~~~~~~
2025-09-08T04:20:41,063   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:20:41,063   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:20:41,063     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:20:41,063         |                          ^~~~~~~~
2025-09-08T04:20:41,072   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:41,072     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:41,073         |                             ^~~~~~~~
2025-09-08T04:20:41,073   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:20:41,073                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:20:41,073   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:20:41,073     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:20:41,073         |                                   ^~~~~~~~
2025-09-08T04:20:41,078   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:41,079     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:41,079         |                             ^~~~~~~~
2025-09-08T04:20:41,079   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:20:41,079     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:20:41,079         |                           ^~~~~~~~
2025-09-08T04:20:41,082   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:41,083     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:41,083         |                             ^~~~~~~~
2025-09-08T04:20:41,083   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:20:41,083   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:20:41,083     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:20:41,083         |                      ^~~~~~~~
2025-09-08T04:20:41,104   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T04:20:41,104                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T04:20:41,104   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:41,104     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T04:20:41,104         |                        ^~~~~~~~
2025-09-08T04:20:41,105   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T04:20:41,105   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T04:20:41,105     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T04:20:41,105         |                        ^~~~~~~~
2025-09-08T04:20:41,108   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:41,109     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:41,109         |                             ^~~~~~~~
2025-09-08T04:20:41,109   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T04:20:41,109   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T04:20:41,109     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T04:20:41,109         |                            ^~~~~~~~
2025-09-08T04:20:41,115   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:41,115     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:41,115         |                             ^~~~~~~~
2025-09-08T04:20:41,115   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T04:20:41,116   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T04:20:41,116     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T04:20:41,116         |                          ^~~~~~~~
2025-09-08T04:20:47,395   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:20:47,395                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:20:47,395                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:20:47,395                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2025-09-08T04:20:47,395                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2025-09-08T04:20:47,395   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:47,395      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:47,396         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:47,397   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:47,397                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2025-09-08T04:20:47,397                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2025-09-08T04:20:47,397                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2025-09-08T04:20:47,397   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:47,397     117 |     struct unary_function
2025-09-08T04:20:47,397         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:50,844   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:20:50,844                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:20:50,844                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:20:50,845                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2025-09-08T04:20:50,845   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:50,845      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:50,845         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:50,846   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:50,846                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:20:50,846   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:50,846     117 |     struct unary_function
2025-09-08T04:20:50,846         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:51,348   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:20:51,348                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:20:51,349                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T04:20:51,349                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T04:20:51,349                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:35:
2025-09-08T04:20:51,349   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:51,349     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:51,349         |                             ^~~~~~~~
2025-09-08T04:20:51,349   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:20:51,349     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:20:51,349         |                              ^~~~~~~~
2025-09-08T04:20:51,352   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:51,352     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:51,352         |                             ^~~~~~~~
2025-09-08T04:20:51,353   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:20:51,353   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:20:51,353     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:20:51,353         |                          ^~~~~~~~
2025-09-08T04:20:51,362   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:51,362     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:51,362         |                             ^~~~~~~~
2025-09-08T04:20:51,363   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:20:51,363                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:20:51,363   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:20:51,363     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:20:51,363         |                                   ^~~~~~~~
2025-09-08T04:20:51,368   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:51,368     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:51,368         |                             ^~~~~~~~
2025-09-08T04:20:51,369   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:20:51,369     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:20:51,369         |                           ^~~~~~~~
2025-09-08T04:20:51,372   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:51,372     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:51,372         |                             ^~~~~~~~
2025-09-08T04:20:51,373   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:20:51,373   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:20:51,373     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:20:51,373         |                      ^~~~~~~~
2025-09-08T04:20:51,394   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T04:20:51,394                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T04:20:51,394   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:51,394     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T04:20:51,394         |                        ^~~~~~~~
2025-09-08T04:20:51,395   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T04:20:51,395   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T04:20:51,395     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T04:20:51,395         |                        ^~~~~~~~
2025-09-08T04:20:51,398   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:51,398     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:51,399         |                             ^~~~~~~~
2025-09-08T04:20:51,399   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T04:20:51,399   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T04:20:51,399     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T04:20:51,399         |                            ^~~~~~~~
2025-09-08T04:20:51,404   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:51,405     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:51,405         |                             ^~~~~~~~
2025-09-08T04:20:51,405   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T04:20:51,405   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T04:20:51,405     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T04:20:51,406         |                          ^~~~~~~~
2025-09-08T04:20:51,408   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:51,408      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T04:20:51,408         |                       ^~~~~~~~~~~~~~
2025-09-08T04:20:51,408   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:51,409     117 |     struct unary_function
2025-09-08T04:20:51,409         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:51,649   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T04:20:51,649   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:24: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T04:20:51,649     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T04:20:51,649         |                        ^
2025-09-08T04:20:51,649   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:41: note: ‘x’ declared here
2025-09-08T04:20:51,649     417 |         virtual bool visit(const SBase &x)
2025-09-08T04:20:51,649         |                            ~~~~~~~~~~~~~^
2025-09-08T04:20:51,671   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T04:20:51,672   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T04:20:51,672     550 |   if (&d == NULL) return 0;
2025-09-08T04:20:51,672         |          ^
2025-09-08T04:20:51,672   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2025-09-08T04:20:51,672     548 | LayoutValidator::validate (const SBMLDocument& d)
2025-09-08T04:20:51,672         |                            ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T04:20:51,675   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T04:20:51,675   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T04:20:51,675     592 |   if (&filename == NULL) return 0;
2025-09-08T04:20:51,675         |                 ^
2025-09-08T04:20:51,675   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2025-09-08T04:20:51,675     590 | LayoutValidator::validate (const std::string& filename)
2025-09-08T04:20:51,675         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:20:52,623   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2025-09-08T04:20:52,624   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:20:52,624     550 |   if (&d == NULL) return 0;
2025-09-08T04:20:52,624         |   ^~
2025-09-08T04:20:52,648   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2025-09-08T04:20:52,649   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:32: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:20:52,649     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2025-09-08T04:20:52,649         |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:20:52,668   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2025-09-08T04:20:52,668   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:20:52,668     592 |   if (&filename == NULL) return 0;
2025-09-08T04:20:52,668         |   ^~
2025-09-08T04:20:57,478   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:20:57,478                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:20:57,478                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:20:57,479                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2025-09-08T04:20:57,479   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:20:57,479      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:20:57,479         |                           ^~~~~~~~~~~~~~
2025-09-08T04:20:57,480   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:20:57,480                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:20:57,480   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:20:57,480     117 |     struct unary_function
2025-09-08T04:20:57,480         |            ^~~~~~~~~~~~~~
2025-09-08T04:20:57,983   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:20:57,983                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:20:57,983                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T04:20:57,983                    from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:36,
2025-09-08T04:20:57,984                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:41:
2025-09-08T04:20:57,984   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:57,984     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:57,984         |                             ^~~~~~~~
2025-09-08T04:20:57,984   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:20:57,984     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:20:57,984         |                              ^~~~~~~~
2025-09-08T04:20:57,987   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:57,987     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:57,987         |                             ^~~~~~~~
2025-09-08T04:20:57,988   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:20:57,988   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:20:57,988     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:20:57,988         |                          ^~~~~~~~
2025-09-08T04:20:57,999   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:57,999     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:57,999         |                             ^~~~~~~~
2025-09-08T04:20:58,000   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:20:58,000                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:20:58,000   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:20:58,000     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:20:58,000         |                                   ^~~~~~~~
2025-09-08T04:20:58,005   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:58,005     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:58,005         |                             ^~~~~~~~
2025-09-08T04:20:58,006   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:20:58,006     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:20:58,006         |                           ^~~~~~~~
2025-09-08T04:20:58,009   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:58,009     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:58,009         |                             ^~~~~~~~
2025-09-08T04:20:58,010   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:20:58,010   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:20:58,010     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:20:58,010         |                      ^~~~~~~~
2025-09-08T04:20:58,031   In file included from ./base//sbml/packages/layout/sbml/Curve.h:69,
2025-09-08T04:20:58,031                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61:
2025-09-08T04:20:58,031   ./base//sbml/packages/layout/sbml/LineSegment.h:122:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:58,031     122 |   virtual LineSegment& operator=(const LineSegment& orig);
2025-09-08T04:20:58,031         |                        ^~~~~~~~
2025-09-08T04:20:58,032   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:41:
2025-09-08T04:20:58,032   ./base//sbml/packages/layout/sbml/CubicBezier.h:154:24: note:   by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’
2025-09-08T04:20:58,032     154 |   virtual CubicBezier& operator=(const CubicBezier& orig);
2025-09-08T04:20:58,032         |                        ^~~~~~~~
2025-09-08T04:20:58,035   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:58,036     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:58,036         |                             ^~~~~~~~
2025-09-08T04:20:58,036   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:53:
2025-09-08T04:20:58,036   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T04:20:58,036     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T04:20:58,036         |                            ^~~~~~~~
2025-09-08T04:20:58,042   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:20:58,042     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:20:58,042         |                             ^~~~~~~~
2025-09-08T04:20:58,042   In file included from ./base//sbml/packages/layout/common/LayoutExtensionTypes.h:54:
2025-09-08T04:20:58,043   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T04:20:58,043     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T04:20:58,043         |                          ^~~~~~~~
2025-09-08T04:21:01,175   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:21:01,175                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:21:01,175                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:21:01,175                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2025-09-08T04:21:01,175   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:01,175      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:01,175         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:01,176   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:01,176                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:21:01,176   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:01,176     117 |     struct unary_function
2025-09-08T04:21:01,176         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:04,644   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:21:04,645                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:21:04,645                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:21:04,645                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2025-09-08T04:21:04,645                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2025-09-08T04:21:04,645   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:04,645      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:04,645         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:04,646   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:04,646                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2025-09-08T04:21:04,646   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:04,646     117 |     struct unary_function
2025-09-08T04:21:04,646         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:05,085   In file included from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2025-09-08T04:21:05,085                    from ./base//sbml/packages/layout/sbml/Layout.h:59,
2025-09-08T04:21:05,085                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:54,
2025-09-08T04:21:05,086                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:36:
2025-09-08T04:21:05,086   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:21:05,086     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:21:05,086         |                             ^~~~~~~~
2025-09-08T04:21:05,086   ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:115:30: note:   by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’
2025-09-08T04:21:05,086     115 |   virtual  CompartmentGlyph& operator=(const CompartmentGlyph& source);
2025-09-08T04:21:05,086         |                              ^~~~~~~~
2025-09-08T04:21:05,089   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:21:05,089     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:21:05,089         |                             ^~~~~~~~
2025-09-08T04:21:05,090   In file included from ./base//sbml/packages/layout/sbml/Layout.h:60:
2025-09-08T04:21:05,090   ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:111:26: note:   by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’
2025-09-08T04:21:05,090     111 |    virtual SpeciesGlyph& operator=(const SpeciesGlyph& source);
2025-09-08T04:21:05,090         |                          ^~~~~~~~
2025-09-08T04:21:05,099   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:21:05,099     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:21:05,099         |                             ^~~~~~~~
2025-09-08T04:21:05,100   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:62,
2025-09-08T04:21:05,100                    from ./base//sbml/packages/layout/sbml/Layout.h:61:
2025-09-08T04:21:05,100   ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:124:35: note:   by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’
2025-09-08T04:21:05,100     124 |    virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source);
2025-09-08T04:21:05,100         |                                   ^~~~~~~~
2025-09-08T04:21:05,105   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:21:05,105     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:21:05,106         |                             ^~~~~~~~
2025-09-08T04:21:05,106   ./base//sbml/packages/layout/sbml/ReactionGlyph.h:297:27: note:   by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’
2025-09-08T04:21:05,106     297 |   virtual  ReactionGlyph& operator=(const ReactionGlyph& source);
2025-09-08T04:21:05,106         |                           ^~~~~~~~
2025-09-08T04:21:05,109   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:21:05,110     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:21:05,110         |                             ^~~~~~~~
2025-09-08T04:21:05,110   In file included from ./base//sbml/packages/layout/sbml/Layout.h:62:
2025-09-08T04:21:05,110   ./base//sbml/packages/layout/sbml/TextGlyph.h:122:22: note:   by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’
2025-09-08T04:21:05,110     122 |   virtual TextGlyph& operator=(const TextGlyph& source);
2025-09-08T04:21:05,110         |                      ^~~~~~~~
2025-09-08T04:21:05,128   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:21:05,128     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:21:05,128         |                             ^~~~~~~~
2025-09-08T04:21:05,128   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:56,
2025-09-08T04:21:05,128                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:38:
2025-09-08T04:21:05,129   ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:117:28: note:   by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’
2025-09-08T04:21:05,129     117 |    virtual ReferenceGlyph& operator=(const ReferenceGlyph& source);
2025-09-08T04:21:05,129         |                            ^~~~~~~~
2025-09-08T04:21:05,134   ./base//sbml/packages/layout/sbml/GraphicalObject.h:161:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=]
2025-09-08T04:21:05,134     161 |    virtual GraphicalObject& operator=(const GraphicalObject& source);
2025-09-08T04:21:05,134         |                             ^~~~~~~~
2025-09-08T04:21:05,135   ./base//sbml/packages/layout/sbml/GeneralGlyph.h:292:26: note:   by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’
2025-09-08T04:21:05,135     292 |   virtual  GeneralGlyph& operator=(const GeneralGlyph& source);
2025-09-08T04:21:05,135         |                          ^~~~~~~~
2025-09-08T04:21:09,755   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:21:09,756                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:21:09,756                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:21:09,756                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2025-09-08T04:21:09,756                    from ./base//sbml/extension/SBMLExtension.h:119,
2025-09-08T04:21:09,756                    from ./base//sbml/extension/SBMLExtensionRegister.h:51,
2025-09-08T04:21:09,756                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2025-09-08T04:21:09,756   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:09,756      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:09,756         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:09,757   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:09,757                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:21:09,757                    from ./base//sbml/SBMLError.h:457,
2025-09-08T04:21:09,757                    from ./base//sbml/SBMLDocument.h:288:
2025-09-08T04:21:09,757   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:09,758     117 |     struct unary_function
2025-09-08T04:21:09,758         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:14,487   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:21:14,487                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:21:14,487                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:21:14,488                    from ./base//sbml/extension/SBasePlugin.h:68,
2025-09-08T04:21:14,488                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:54,
2025-09-08T04:21:14,488                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2025-09-08T04:21:14,488   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:14,488      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:14,488         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:14,489   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:14,489                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:21:14,489                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:21:14,489                    from ./base//sbml/extension/SBasePlugin.h:66:
2025-09-08T04:21:14,489   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:14,489     117 |     struct unary_function
2025-09-08T04:21:14,489         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:19,129   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:21:19,129                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:21:19,129                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:21:19,129                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2025-09-08T04:21:19,129                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:58,
2025-09-08T04:21:19,129                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2025-09-08T04:21:19,130   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:19,130      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:19,130         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:19,130   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:19,131                    from ./base//sbml/xml/XMLError.h:563,
2025-09-08T04:21:19,131                    from ./base//sbml/SBMLErrorLog.h:102,
2025-09-08T04:21:19,131                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53:
2025-09-08T04:21:19,131   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:19,131     117 |     struct unary_function
2025-09-08T04:21:19,131         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:22,848   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2025-09-08T04:21:22,848                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2025-09-08T04:21:22,848   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:22,848      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:22,849         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:22,849   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:22,850                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2025-09-08T04:21:22,850   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:22,850     117 |     struct unary_function
2025-09-08T04:21:22,850         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:23,379   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T04:21:23,379   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:21:23,379      81 |   if (&orig == NULL)
2025-09-08T04:21:23,380         |             ^
2025-09-08T04:21:23,380   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2025-09-08T04:21:23,380      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2025-09-08T04:21:23,380         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:23,382   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T04:21:23,382   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:21:23,382      99 |   if (&rhs == NULL)
2025-09-08T04:21:23,382         |            ^
2025-09-08T04:21:23,382   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2025-09-08T04:21:23,382      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2025-09-08T04:21:23,382         |                        ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:21:23,841   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2025-09-08T04:21:23,841   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:23,841      81 |   if (&orig == NULL)
2025-09-08T04:21:23,841         |   ^~
2025-09-08T04:21:23,842   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2025-09-08T04:21:23,842   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:23,842      99 |   if (&rhs == NULL)
2025-09-08T04:21:23,843         |   ^~
2025-09-08T04:21:27,541   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:58,
2025-09-08T04:21:27,541                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2025-09-08T04:21:27,542   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:27,542      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:27,542         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:27,543   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:27,543                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:54:
2025-09-08T04:21:27,543   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:27,543     117 |     struct unary_function
2025-09-08T04:21:27,543         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:28,074   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T04:21:28,075   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:21:28,075      88 |   if (&orig == NULL)
2025-09-08T04:21:28,075         |             ^
2025-09-08T04:21:28,075   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2025-09-08T04:21:28,075      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2025-09-08T04:21:28,075         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:28,077   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T04:21:28,077   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:21:28,077     114 |   if (&rhs == NULL)
2025-09-08T04:21:28,078         |            ^
2025-09-08T04:21:28,078   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2025-09-08T04:21:28,078     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2025-09-08T04:21:28,078         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:21:28,100   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T04:21:28,100   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:21:28,100     651 |   if (&orig == NULL)
2025-09-08T04:21:28,100         |             ^
2025-09-08T04:21:28,100   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:648:70: note: ‘orig’ declared here
2025-09-08T04:21:28,100     648 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2025-09-08T04:21:28,101         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:28,102   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T04:21:28,102   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:21:28,102     673 |   if (&rhs == NULL)
2025-09-08T04:21:28,102         |            ^
2025-09-08T04:21:28,103   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:671:59: note: ‘rhs’ declared here
2025-09-08T04:21:28,103     671 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2025-09-08T04:21:28,103         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:21:28,622   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2025-09-08T04:21:28,622   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:28,622      88 |   if (&orig == NULL)
2025-09-08T04:21:28,622         |   ^~
2025-09-08T04:21:28,623   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2025-09-08T04:21:28,623   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:28,623     114 |   if (&rhs == NULL)
2025-09-08T04:21:28,623         |   ^~
2025-09-08T04:21:28,624   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2025-09-08T04:21:28,624   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:28,624     673 |   if (&rhs == NULL)
2025-09-08T04:21:28,624         |   ^~
2025-09-08T04:21:28,636   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2025-09-08T04:21:28,636   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:28,636     651 |   if (&orig == NULL)
2025-09-08T04:21:28,636         |   ^~
2025-09-08T04:21:33,862   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2025-09-08T04:21:33,862                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2025-09-08T04:21:33,862   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:33,862      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:33,862         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:33,863   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:33,863                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2025-09-08T04:21:33,863   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:33,863     117 |     struct unary_function
2025-09-08T04:21:33,863         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:34,396   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T04:21:34,396   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:21:34,396      91 |   if (&orig == NULL)
2025-09-08T04:21:34,396         |             ^
2025-09-08T04:21:34,397   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2025-09-08T04:21:34,397      88 | Input::Input (const Input& orig)
2025-09-08T04:21:34,397         |               ~~~~~~~~~~~~~^~~~
2025-09-08T04:21:34,399   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T04:21:34,399   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:21:34,399     114 |   if (&rhs == NULL)
2025-09-08T04:21:34,399         |            ^
2025-09-08T04:21:34,399   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2025-09-08T04:21:34,400     112 | Input::operator=(const Input& rhs)
2025-09-08T04:21:34,400         |                  ~~~~~~~~~~~~~^~~
2025-09-08T04:21:34,404   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T04:21:34,405   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T04:21:34,405     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T04:21:34,405         |                             ^
2025-09-08T04:21:34,405   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2025-09-08T04:21:34,405     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T04:21:34,405         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T04:21:34,407   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T04:21:34,407   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:21:34,407     328 |   if (&(name) == NULL)
2025-09-08T04:21:34,407         |               ^
2025-09-08T04:21:34,407   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2025-09-08T04:21:34,407     326 | Input::setName(const std::string& name)
2025-09-08T04:21:34,407         |                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:34,441   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2025-09-08T04:21:34,441   ./base/sbml/packages/qual/sbml/Input.cpp:956:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:34,441     956 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T04:21:34,441         |                             ^~~~~~~~~~~~~~
2025-09-08T04:21:34,441   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:34,442     117 |     struct unary_function
2025-09-08T04:21:34,442         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:34,970   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2025-09-08T04:21:34,970   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:34,970     328 |   if (&(name) == NULL)
2025-09-08T04:21:34,970         |   ^~
2025-09-08T04:21:34,987   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2025-09-08T04:21:34,987   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:34,987      91 |   if (&orig == NULL)
2025-09-08T04:21:34,987         |   ^~
2025-09-08T04:21:34,988   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2025-09-08T04:21:34,988   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:34,988     114 |   if (&rhs == NULL)
2025-09-08T04:21:34,988         |   ^~
2025-09-08T04:21:34,989   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2025-09-08T04:21:34,989   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:34,989     287 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T04:21:34,989         |   ^~
2025-09-08T04:21:41,704   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2025-09-08T04:21:41,704                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2025-09-08T04:21:41,704   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:41,704      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:41,704         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:41,705   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:41,705                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2025-09-08T04:21:41,705   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:41,705     117 |     struct unary_function
2025-09-08T04:21:41,705         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:42,239   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T04:21:42,240   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:21:42,240      89 |   if (&orig == NULL)
2025-09-08T04:21:42,240         |             ^
2025-09-08T04:21:42,240   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2025-09-08T04:21:42,240      86 | Output::Output (const Output& orig)
2025-09-08T04:21:42,240         |                 ~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:42,242   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T04:21:42,242   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:21:42,243     111 |   if (&rhs == NULL)
2025-09-08T04:21:42,243         |            ^
2025-09-08T04:21:42,243   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2025-09-08T04:21:42,243     109 | Output::operator=(const Output& rhs)
2025-09-08T04:21:42,243         |                   ~~~~~~~~~~~~~~^~~
2025-09-08T04:21:42,247   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T04:21:42,247   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2025-09-08T04:21:42,247     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T04:21:42,248         |                             ^
2025-09-08T04:21:42,248   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2025-09-08T04:21:42,248     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2025-09-08T04:21:42,248         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2025-09-08T04:21:42,249   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T04:21:42,249   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:21:42,250     304 |   if (&(name) == NULL)
2025-09-08T04:21:42,250         |               ^
2025-09-08T04:21:42,250   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2025-09-08T04:21:42,250     302 | Output::setName(const std::string& name)
2025-09-08T04:21:42,250         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:42,281   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2025-09-08T04:21:42,281   ./base/sbml/packages/qual/sbml/Output.cpp:873:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:42,281     873 | struct IdEqQS : public std::unary_function<SBase*, bool>
2025-09-08T04:21:42,281         |                             ^~~~~~~~~~~~~~
2025-09-08T04:21:42,281   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:42,281     117 |     struct unary_function
2025-09-08T04:21:42,281         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:42,795   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2025-09-08T04:21:42,796   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:42,796     304 |   if (&(name) == NULL)
2025-09-08T04:21:42,796         |   ^~
2025-09-08T04:21:42,811   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2025-09-08T04:21:42,812   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:42,812      89 |   if (&orig == NULL)
2025-09-08T04:21:42,812         |   ^~
2025-09-08T04:21:42,813   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2025-09-08T04:21:42,813   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:42,813     111 |   if (&rhs == NULL)
2025-09-08T04:21:42,813         |   ^~
2025-09-08T04:21:42,814   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2025-09-08T04:21:42,814   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:42,814     263 |   if (&(qualitativeSpecies) == NULL)
2025-09-08T04:21:42,814         |   ^~
2025-09-08T04:21:49,211   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:69,
2025-09-08T04:21:49,211                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2025-09-08T04:21:49,211   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:49,211      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:49,211         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:49,212   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:49,212                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:65:
2025-09-08T04:21:49,212   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:49,213     117 |     struct unary_function
2025-09-08T04:21:49,213         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:49,746   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T04:21:49,746   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:21:49,746      95 |   if (&orig == NULL)
2025-09-08T04:21:49,746         |             ^
2025-09-08T04:21:49,747   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2025-09-08T04:21:49,747      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2025-09-08T04:21:49,747         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:49,749   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T04:21:49,749   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:21:49,749     120 |   if (&rhs == NULL)
2025-09-08T04:21:49,749         |            ^
2025-09-08T04:21:49,750   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2025-09-08T04:21:49,750     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2025-09-08T04:21:49,750         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:21:49,753   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T04:21:49,754   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2025-09-08T04:21:49,754     295 |   if (&(compartment) == NULL)
2025-09-08T04:21:49,754         |                      ^
2025-09-08T04:21:49,754   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2025-09-08T04:21:49,754     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2025-09-08T04:21:49,754         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2025-09-08T04:21:49,755   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2025-09-08T04:21:49,756   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:21:49,756     329 |   if (&(name) == NULL)
2025-09-08T04:21:49,756         |               ^
2025-09-08T04:21:49,756   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2025-09-08T04:21:49,756     327 | QualitativeSpecies::setName(const std::string& name)
2025-09-08T04:21:49,756         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:50,296   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:50,296     329 |   if (&(name) == NULL)
2025-09-08T04:21:50,297         |   ^~
2025-09-08T04:21:50,310   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2025-09-08T04:21:50,311   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:50,311      95 |   if (&orig == NULL)
2025-09-08T04:21:50,311         |   ^~
2025-09-08T04:21:50,312   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2025-09-08T04:21:50,312   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:50,312     120 |   if (&rhs == NULL)
2025-09-08T04:21:50,312         |   ^~
2025-09-08T04:21:50,313   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2025-09-08T04:21:50,313   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:50,313     295 |   if (&(compartment) == NULL)
2025-09-08T04:21:50,313         |   ^~
2025-09-08T04:21:56,823   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2025-09-08T04:21:56,823                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2025-09-08T04:21:56,823   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:21:56,823      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:21:56,824         |                           ^~~~~~~~~~~~~~
2025-09-08T04:21:56,824   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:21:56,825                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2025-09-08T04:21:56,825   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:21:56,825     117 |     struct unary_function
2025-09-08T04:21:56,825         |            ^~~~~~~~~~~~~~
2025-09-08T04:21:57,381   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T04:21:57,381   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:21:57,381      94 |   if (&orig == NULL)
2025-09-08T04:21:57,381         |             ^
2025-09-08T04:21:57,382   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2025-09-08T04:21:57,382      91 | Transition::Transition (const Transition& orig)
2025-09-08T04:21:57,382         |                         ~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:57,384   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T04:21:57,385   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:21:57,385     118 |   if (&rhs == NULL)
2025-09-08T04:21:57,385         |            ^
2025-09-08T04:21:57,385   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2025-09-08T04:21:57,385     116 | Transition::operator=(const Transition& rhs)
2025-09-08T04:21:57,385         |                       ~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:21:57,392   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2025-09-08T04:21:57,392   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:21:57,392     257 |   if (&(name) == NULL)
2025-09-08T04:21:57,393         |               ^
2025-09-08T04:21:57,393   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2025-09-08T04:21:57,393     255 | Transition::setName(const std::string& name)
2025-09-08T04:21:57,393         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:21:57,950   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:57,951     257 |   if (&(name) == NULL)
2025-09-08T04:21:57,951         |   ^~
2025-09-08T04:21:57,966   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2025-09-08T04:21:57,967   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:57,967     118 |   if (&rhs == NULL)
2025-09-08T04:21:57,967         |   ^~
2025-09-08T04:21:57,981   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2025-09-08T04:21:57,982   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:21:57,982      94 |   if (&orig == NULL)
2025-09-08T04:21:57,982         |   ^~
2025-09-08T04:22:04,502   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:04,502                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:04,502                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:22:04,502                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2025-09-08T04:22:04,502                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2025-09-08T04:22:04,502   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:04,502      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:04,502         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:04,503   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:04,503                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2025-09-08T04:22:04,503                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2025-09-08T04:22:04,503                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2025-09-08T04:22:04,504   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:04,504     117 |     struct unary_function
2025-09-08T04:22:04,504         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:09,366   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:09,366                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:09,366                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:22:09,366                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2025-09-08T04:22:09,367                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2025-09-08T04:22:09,367   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:09,367      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:09,367         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:09,367   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:09,367                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2025-09-08T04:22:09,367                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2025-09-08T04:22:09,367                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2025-09-08T04:22:09,368   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:09,368     117 |     struct unary_function
2025-09-08T04:22:09,368         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:12,825   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:12,825                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:12,825                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:22:12,825                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2025-09-08T04:22:12,825                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2025-09-08T04:22:12,825   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:12,825      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:12,825         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:12,826   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:12,826                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2025-09-08T04:22:12,826                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2025-09-08T04:22:12,826                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2025-09-08T04:22:12,827   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:12,827     117 |     struct unary_function
2025-09-08T04:22:12,827         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:16,458   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:16,459                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:16,459                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:22:16,459                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2025-09-08T04:22:16,459   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:16,459      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:16,459         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:16,460   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:16,460                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:22:16,460   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:16,460     117 |     struct unary_function
2025-09-08T04:22:16,460         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:16,978   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:16,978      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T04:22:16,979         |                       ^~~~~~~~~~~~~~
2025-09-08T04:22:16,979   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:16,979     117 |     struct unary_function
2025-09-08T04:22:16,979         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:17,127   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T04:22:17,127   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2025-09-08T04:22:17,127     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T04:22:17,127         |           ^
2025-09-08T04:22:17,128   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2025-09-08T04:22:17,128     313 |   virtual bool visit (const SBase &x)
2025-09-08T04:22:17,128         |                       ~~~~~~~~~~~~~^
2025-09-08T04:22:17,142   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T04:22:17,142   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T04:22:17,142     419 |   if (&d == NULL) return 0;
2025-09-08T04:22:17,142         |          ^
2025-09-08T04:22:17,142   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2025-09-08T04:22:17,142     417 | QualValidator::validate (const SBMLDocument& d)
2025-09-08T04:22:17,143         |                          ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T04:22:17,145   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T04:22:17,145   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T04:22:17,145     449 |   if (&filename == NULL) return 0;
2025-09-08T04:22:17,145         |                 ^
2025-09-08T04:22:17,145   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2025-09-08T04:22:17,145     447 | QualValidator::validate (const std::string& filename)
2025-09-08T04:22:17,145         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:22:17,887   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2025-09-08T04:22:17,887   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:22:17,887     419 |   if (&d == NULL) return 0;
2025-09-08T04:22:17,887         |   ^~
2025-09-08T04:22:17,900   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2025-09-08T04:22:17,901   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:22:17,901     315 |     if(&x == NULL || x.getPackageName() != "qual")
2025-09-08T04:22:17,901         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:22:17,914   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2025-09-08T04:22:17,914   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:22:17,914     449 |   if (&filename == NULL) return 0;
2025-09-08T04:22:17,914         |   ^~
2025-09-08T04:22:22,122   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:22:22,122                    from ./base//sbml/Model.h:446,
2025-09-08T04:22:22,122                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2025-09-08T04:22:22,122   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:22,122      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:22,122         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:22,123   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:22,123                    from ./base//sbml/Model.h:444:
2025-09-08T04:22:22,123   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:22,123     117 |     struct unary_function
2025-09-08T04:22:22,123         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:26,116   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:26,117                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:26,117                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:22:26,117                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2025-09-08T04:22:26,117                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2025-09-08T04:22:26,117   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:26,117      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:26,117         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:26,118   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:26,118                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2025-09-08T04:22:26,118   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:26,118     117 |     struct unary_function
2025-09-08T04:22:26,118         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:26,639   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:22:26,639   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:22:26,640      97 |   if (&(node) == NULL)
2025-09-08T04:22:26,640         |               ^
2025-09-08T04:22:26,640   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2025-09-08T04:22:26,640      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:22:26,640         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:22:27,063   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:22:27,063      97 |   if (&(node) == NULL)
2025-09-08T04:22:27,063         |   ^~
2025-09-08T04:22:30,016   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:30,017                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:30,017                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:22:30,017                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2025-09-08T04:22:30,017   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:30,017      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:30,017         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:30,018   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:30,018                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:22:30,018   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:30,018     117 |     struct unary_function
2025-09-08T04:22:30,018         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:33,610   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:33,610                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:33,610                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:22:33,610                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2025-09-08T04:22:33,610   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:33,610      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:33,610         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:33,611   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:33,611                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:22:33,611   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:33,612     117 |     struct unary_function
2025-09-08T04:22:33,612         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:36,996   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:36,997                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:36,997                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:22:36,997                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2025-09-08T04:22:36,997   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:36,997      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:36,997         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:36,998   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:36,998                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:22:36,998   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:36,998     117 |     struct unary_function
2025-09-08T04:22:36,998         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:40,619   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:40,619                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:40,619                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:22:40,619                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2025-09-08T04:22:40,619                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2025-09-08T04:22:40,619   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:40,619      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:40,619         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:40,620   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:40,620                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2025-09-08T04:22:40,620   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:40,621     117 |     struct unary_function
2025-09-08T04:22:40,621         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:45,594   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:22:45,594                    from ./base//sbml/Model.h:446,
2025-09-08T04:22:45,594                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2025-09-08T04:22:45,594   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:45,594      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:45,594         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:45,595   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:45,595                    from ./base//sbml/Model.h:444:
2025-09-08T04:22:45,595   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:45,596     117 |     struct unary_function
2025-09-08T04:22:45,596         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:49,465   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:22:49,466                    from ./base//sbml/Model.h:446,
2025-09-08T04:22:49,466                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2025-09-08T04:22:49,466   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:49,466      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:49,466         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:49,467   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:49,467                    from ./base//sbml/Model.h:444:
2025-09-08T04:22:49,467   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:49,467     117 |     struct unary_function
2025-09-08T04:22:49,467         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:53,314   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:22:53,314                    from ./base//sbml/Model.h:446,
2025-09-08T04:22:53,314                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2025-09-08T04:22:53,314   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:53,314      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:53,314         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:53,315   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:53,315                    from ./base//sbml/Model.h:444:
2025-09-08T04:22:53,315   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:53,315     117 |     struct unary_function
2025-09-08T04:22:53,315         |            ^~~~~~~~~~~~~~
2025-09-08T04:22:53,637   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T04:22:53,638   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:22:53,638      74 |   if (&orig == NULL)
2025-09-08T04:22:53,638         |             ^
2025-09-08T04:22:53,638   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2025-09-08T04:22:53,638      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2025-09-08T04:22:53,638         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:22:53,641   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T04:22:53,641   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:22:53,641     138 |   if (&rhs == NULL)
2025-09-08T04:22:53,641         |            ^
2025-09-08T04:22:53,642   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2025-09-08T04:22:53,642     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2025-09-08T04:22:53,642         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:22:54,055   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2025-09-08T04:22:54,055   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:22:54,055      74 |   if (&orig == NULL)
2025-09-08T04:22:54,056         |   ^~
2025-09-08T04:22:54,057   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2025-09-08T04:22:54,057   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:22:54,057     138 |   if (&rhs == NULL)
2025-09-08T04:22:54,057         |   ^~
2025-09-08T04:22:57,032   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:22:57,032                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:22:57,032                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2025-09-08T04:22:57,032   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:22:57,032      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:22:57,032         |                           ^~~~~~~~~~~~~~
2025-09-08T04:22:57,033   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:22:57,033                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T04:22:57,033   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:22:57,033     117 |     struct unary_function
2025-09-08T04:22:57,033         |            ^~~~~~~~~~~~~~
2025-09-08T04:23:08,635   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T04:23:08,635   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2025-09-08T04:23:08,635      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T04:23:08,635         |                       ^
2025-09-08T04:23:08,636   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2025-09-08T04:23:08,636      48 | IdList::IdList(const std::string& commaSeparated)
2025-09-08T04:23:08,636         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-09-08T04:23:08,872   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2025-09-08T04:23:08,873   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:23:08,873      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2025-09-08T04:23:08,873         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-09-08T04:23:18,934   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:23:18,935                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:23:18,935                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2025-09-08T04:23:18,935   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:23:18,935      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:23:18,935         |                           ^~~~~~~~~~~~~~
2025-09-08T04:23:18,936   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:23:18,936                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T04:23:18,936   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:23:18,936     117 |     struct unary_function
2025-09-08T04:23:18,936         |            ^~~~~~~~~~~~~~
2025-09-08T04:23:33,352   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:23:33,352                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:23:33,353                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2025-09-08T04:23:33,353   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:23:33,353      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:23:33,353         |                           ^~~~~~~~~~~~~~
2025-09-08T04:23:33,354   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:23:33,354                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T04:23:33,354   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:23:33,354     117 |     struct unary_function
2025-09-08T04:23:33,354         |            ^~~~~~~~~~~~~~
2025-09-08T04:23:37,649   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:23:37,649                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:23:37,649                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2025-09-08T04:23:37,650   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:23:37,650      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:23:37,650         |                           ^~~~~~~~~~~~~~
2025-09-08T04:23:37,651   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:23:37,651                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T04:23:37,651   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:23:37,651     117 |     struct unary_function
2025-09-08T04:23:37,651         |            ^~~~~~~~~~~~~~
2025-09-08T04:23:44,345   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:23:44,345                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:23:44,345                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2025-09-08T04:23:44,345                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2025-09-08T04:23:44,345   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:23:44,345      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:23:44,346         |                           ^~~~~~~~~~~~~~
2025-09-08T04:23:44,346   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:23:44,346                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T04:23:44,347                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2025-09-08T04:23:44,347                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2025-09-08T04:23:44,347   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:23:44,347     117 |     struct unary_function
2025-09-08T04:23:44,347         |            ^~~~~~~~~~~~~~
2025-09-08T04:23:49,587   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:23:49,588                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:23:49,588                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2025-09-08T04:23:49,588                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2025-09-08T04:23:49,588   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:23:49,588      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:23:49,588         |                           ^~~~~~~~~~~~~~
2025-09-08T04:23:49,589   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:23:49,589                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T04:23:49,589                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2025-09-08T04:23:49,589                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2025-09-08T04:23:49,589   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:23:49,589     117 |     struct unary_function
2025-09-08T04:23:49,589         |            ^~~~~~~~~~~~~~
2025-09-08T04:23:55,155   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:23:55,155                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:23:55,155                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2025-09-08T04:23:55,155                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2025-09-08T04:23:55,156   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:23:55,156      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:23:55,156         |                           ^~~~~~~~~~~~~~
2025-09-08T04:23:55,157   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:23:55,157                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T04:23:55,157                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2025-09-08T04:23:55,157                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2025-09-08T04:23:55,157   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:23:55,157     117 |     struct unary_function
2025-09-08T04:23:55,157         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:00,466   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:24:00,466                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:24:00,466                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2025-09-08T04:24:00,466                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2025-09-08T04:24:00,466   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:00,466      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:00,466         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:00,467   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:00,467                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T04:24:00,467                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2025-09-08T04:24:00,467                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2025-09-08T04:24:00,468   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:00,468     117 |     struct unary_function
2025-09-08T04:24:00,468         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:05,518   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:24:05,519                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:24:05,519                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2025-09-08T04:24:05,519                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2025-09-08T04:24:05,519   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:05,519      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:05,519         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:05,520   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:05,520                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T04:24:05,520                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2025-09-08T04:24:05,520                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2025-09-08T04:24:05,520   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:05,520     117 |     struct unary_function
2025-09-08T04:24:05,520         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:10,531   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:24:10,532                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:24:10,532                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:24:10,532                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2025-09-08T04:24:10,532                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2025-09-08T04:24:10,532   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:10,532      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:10,532         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:10,533   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:10,533                    from ./base//sbml/validator/Validator.h:69,
2025-09-08T04:24:10,533                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2025-09-08T04:24:10,533                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2025-09-08T04:24:10,533   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:10,533     117 |     struct unary_function
2025-09-08T04:24:10,534         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:14,320   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:24:14,320                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:24:14,320                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2025-09-08T04:24:14,321   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:14,321      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:14,321         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:14,321   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:14,322                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T04:24:14,322   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:14,322     117 |     struct unary_function
2025-09-08T04:24:14,322         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:17,817   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:24:17,818                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:24:17,818                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2025-09-08T04:24:17,818   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:17,818      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:17,818         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:17,819   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:17,819                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T04:24:17,819   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:17,819     117 |     struct unary_function
2025-09-08T04:24:17,819         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:21,435   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:24:21,436                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:24:21,436                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2025-09-08T04:24:21,436   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:21,436      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:21,436         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:21,437   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:21,437                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T04:24:21,437   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:21,437     117 |     struct unary_function
2025-09-08T04:24:21,437         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:25,175   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:24:25,175                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:24:25,175                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:24:25,175                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:24:25,175                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T04:24:25,176                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2025-09-08T04:24:25,176                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2025-09-08T04:24:25,176   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:25,176      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:25,176         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:25,177   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:25,177                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:24:25,177                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:24:25,177                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2025-09-08T04:24:25,177   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:25,177     117 |     struct unary_function
2025-09-08T04:24:25,177         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:30,782   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:24:30,783                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:24:30,783                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:24:30,783                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:24:30,783                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T04:24:30,783                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2025-09-08T04:24:30,783                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2025-09-08T04:24:30,783   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:30,783      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:30,783         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:30,784   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:30,784                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:24:30,784                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:24:30,784                    from ./base//sbml/validator/SBMLInternalValidator.h:62:
2025-09-08T04:24:30,784   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:30,785     117 |     struct unary_function
2025-09-08T04:24:30,785         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:35,074   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:24:35,074                    from ./base//sbml/SBMLTransforms.h:48,
2025-09-08T04:24:35,074                    from ./base//sbml/SBMLDocument.h:291,
2025-09-08T04:24:35,074                    from ./base//sbml/SBMLTypes.h:39,
2025-09-08T04:24:35,074                    from ./base//sbml/validator/SBMLValidator.h:75,
2025-09-08T04:24:35,074                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2025-09-08T04:24:35,075   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:35,075      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:35,075         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:35,075   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:35,075                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:24:35,075                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:24:35,075                    from ./base//sbml/validator/SBMLValidator.h:73:
2025-09-08T04:24:35,076   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:35,076     117 |     struct unary_function
2025-09-08T04:24:35,076         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:35,347   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T04:24:35,347   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:24:35,347      59 |   if (&orig == NULL)
2025-09-08T04:24:35,347         |             ^
2025-09-08T04:24:35,347   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2025-09-08T04:24:35,347      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2025-09-08T04:24:35,348         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:24:35,350   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T04:24:35,351   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:24:35,351      87 |   if (&rhs == NULL)
2025-09-08T04:24:35,351         |            ^
2025-09-08T04:24:35,351   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2025-09-08T04:24:35,351      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2025-09-08T04:24:35,351         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:24:35,353   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T04:24:35,353   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T04:24:35,353     168 |   if (&msg == NULL) return;
2025-09-08T04:24:35,354         |            ^
2025-09-08T04:24:35,354   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2025-09-08T04:24:35,354     166 | SBMLValidator::logFailure (const SBMLError& msg)
2025-09-08T04:24:35,354         |                            ~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:24:35,355   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T04:24:35,355   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T04:24:35,355     182 |   if (&filename == NULL) return 0;
2025-09-08T04:24:35,355         |                 ^
2025-09-08T04:24:35,355   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2025-09-08T04:24:35,355     180 | SBMLValidator::validate (const std::string& filename)
2025-09-08T04:24:35,355         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:24:35,797   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2025-09-08T04:24:35,797   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:24:35,797      87 |   if (&rhs == NULL)
2025-09-08T04:24:35,797         |   ^~
2025-09-08T04:24:35,798   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2025-09-08T04:24:35,799   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:24:35,799      59 |   if (&orig == NULL)
2025-09-08T04:24:35,799         |   ^~
2025-09-08T04:24:35,803   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2025-09-08T04:24:35,803   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:24:35,803     168 |   if (&msg == NULL) return;
2025-09-08T04:24:35,803         |   ^~
2025-09-08T04:24:35,804   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2025-09-08T04:24:35,804   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:24:35,804     182 |   if (&filename == NULL) return 0;
2025-09-08T04:24:35,804         |   ^~
2025-09-08T04:24:38,791   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:24:38,791                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:24:38,792                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2025-09-08T04:24:38,792   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:38,792      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:38,792         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:38,793   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:38,793                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T04:24:38,793   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:38,793     117 |     struct unary_function
2025-09-08T04:24:38,793         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:45,462   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:24:45,462                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:24:45,462                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2025-09-08T04:24:45,462   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:45,462      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:45,462         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:45,463   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:45,463                    from ./base//sbml/UnitDefinition.h:253:
2025-09-08T04:24:45,464   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:45,464     117 |     struct unary_function
2025-09-08T04:24:45,464         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:54,325   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:24:54,325                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:24:54,325                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:24:54,325                    from ./base/sbml/validator/VConstraint.cpp:33:
2025-09-08T04:24:54,325   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:54,325      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:54,326         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:54,326   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:24:54,326                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:24:54,327   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:54,327     117 |     struct unary_function
2025-09-08T04:24:54,327         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:54,681   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2025-09-08T04:24:54,681   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2025-09-08T04:24:54,681      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T04:24:54,681         |               ^
2025-09-08T04:24:54,681   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2025-09-08T04:24:54,681      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T04:24:54,681         |                          ~~~~~~~~~~~~~^~~~~~
2025-09-08T04:24:54,682   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2025-09-08T04:24:54,682      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T04:24:54,682         |                                   ^
2025-09-08T04:24:54,682   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2025-09-08T04:24:54,682      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2025-09-08T04:24:54,682         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:24:55,062   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:24:55,062      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T04:24:55,062         |               ^
2025-09-08T04:24:55,062   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:24:55,062      99 |   if (&object == NULL || &message == NULL) return;
2025-09-08T04:24:55,063         |                                   ^
2025-09-08T04:24:57,797   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2025-09-08T04:24:57,797                    from ./base/sbml/validator/Validator.cpp:39:
2025-09-08T04:24:57,797   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:57,797      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:24:57,797         |                           ^~~~~~~~~~~~~~
2025-09-08T04:24:57,798   In file included from /usr/include/c++/14/functional:49,
2025-09-08T04:24:57,798                    from ./base/sbml/validator/Validator.cpp:34:
2025-09-08T04:24:57,798   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:57,798     117 |     struct unary_function
2025-09-08T04:24:57,798         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:58,274   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:24:58,274      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2025-09-08T04:24:58,275         |                       ^~~~~~~~~~~~~~
2025-09-08T04:24:58,275   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:24:58,275     117 |     struct unary_function
2025-09-08T04:24:58,275         |            ^~~~~~~~~~~~~~
2025-09-08T04:24:58,639   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T04:24:58,639   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2025-09-08T04:24:58,639     709 |   if (&msg == NULL) return;
2025-09-08T04:24:58,639         |            ^
2025-09-08T04:24:58,640   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2025-09-08T04:24:58,640     707 | Validator::logFailure (const SBMLError& msg)
2025-09-08T04:24:58,640         |                        ~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:24:58,642   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T04:24:58,642   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2025-09-08T04:24:58,642     754 |   if (&d == NULL) return 0;
2025-09-08T04:24:58,642         |          ^
2025-09-08T04:24:58,642   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2025-09-08T04:24:58,642     752 | Validator::validate (const SBMLDocument& d)
2025-09-08T04:24:58,642         |                      ~~~~~~~~~~~~~~~~~~~~^
2025-09-08T04:24:58,648   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T04:24:58,649   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T04:24:58,649     815 |   if (&filename == NULL) return 0;
2025-09-08T04:24:58,649         |                 ^
2025-09-08T04:24:58,649   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2025-09-08T04:24:58,649     813 | Validator::validate (const std::string& filename)
2025-09-08T04:24:58,649         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:24:59,929   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2025-09-08T04:24:59,930   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:24:59,930     709 |   if (&msg == NULL) return;
2025-09-08T04:24:59,930         |   ^~
2025-09-08T04:24:59,950   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2025-09-08T04:24:59,950   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:24:59,951     754 |   if (&d == NULL) return 0;
2025-09-08T04:24:59,951         |   ^~
2025-09-08T04:24:59,951   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2025-09-08T04:24:59,951   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:24:59,952     815 |   if (&filename == NULL) return 0;
2025-09-08T04:24:59,952         |   ^~
2025-09-08T04:25:06,261   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:06,262                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:06,262                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2025-09-08T04:25:06,262   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:06,262      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:06,262         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:06,263   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:06,263                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:06,263   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:06,263     117 |     struct unary_function
2025-09-08T04:25:06,263         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:10,377   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:10,377                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:10,377                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2025-09-08T04:25:10,377   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:10,377      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:10,377         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:10,377   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:10,378                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:10,378   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:10,378     117 |     struct unary_function
2025-09-08T04:25:10,378         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:14,240   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:14,240                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:14,240                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2025-09-08T04:25:14,241   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:14,241      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:14,241         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:14,241   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:14,242                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:14,242   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:14,242     117 |     struct unary_function
2025-09-08T04:25:14,242         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:21,994   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:21,995                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:21,995                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2025-09-08T04:25:21,995   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:21,995      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:21,995         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:21,996   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:21,996                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:21,996   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:21,996     117 |     struct unary_function
2025-09-08T04:25:21,996         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:26,264   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:26,265                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:26,265                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2025-09-08T04:25:26,265   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:26,265      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:26,265         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:26,266   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:26,266                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:26,266   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:26,266     117 |     struct unary_function
2025-09-08T04:25:26,266         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:26,524   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:25:26,525   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:25:26,525     104 |   if (&(node) == NULL)
2025-09-08T04:25:26,525         |               ^
2025-09-08T04:25:26,525   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2025-09-08T04:25:26,525     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:25:26,525         |                                                ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:25:26,936   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:25:26,937     104 |   if (&(node) == NULL)
2025-09-08T04:25:26,937         |   ^~
2025-09-08T04:25:30,114   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:30,114                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:30,114                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2025-09-08T04:25:30,114   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:30,114      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:30,114         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:30,115   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:30,115                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:30,115   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:30,115     117 |     struct unary_function
2025-09-08T04:25:30,116         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:30,383   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:30,383     119 | struct CycleContains : public unary_function<IdList, bool>
2025-09-08T04:25:30,383         |                               ^~~~~~~~~~~~~~
2025-09-08T04:25:30,383   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:30,383     117 |     struct unary_function
2025-09-08T04:25:30,383         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:34,938   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:25:34,938                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:25:34,938                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:25:34,939                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2025-09-08T04:25:34,939   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:34,939      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:34,939         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:34,940   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:34,940                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:25:34,940                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:25:34,940                    from ./base//sbml/SBO.h:196,
2025-09-08T04:25:34,940                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2025-09-08T04:25:34,940   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:34,941     117 |     struct unary_function
2025-09-08T04:25:34,941         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:38,759   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:38,759                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:38,759                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2025-09-08T04:25:38,759   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:38,759      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:38,759         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:38,760   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:38,760                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:38,760   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:38,761     117 |     struct unary_function
2025-09-08T04:25:38,761         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:42,930   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:42,931                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:42,931                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2025-09-08T04:25:42,931   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:42,931      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:42,931         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:42,932   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:42,932                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:42,932   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:42,932     117 |     struct unary_function
2025-09-08T04:25:42,932         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:43,191   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:25:43,191   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:25:43,191     101 |   if (&(node) == NULL)
2025-09-08T04:25:43,191         |               ^
2025-09-08T04:25:43,191   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2025-09-08T04:25:43,191      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:25:43,191         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:25:43,589   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:25:43,589     101 |   if (&(node) == NULL)
2025-09-08T04:25:43,589         |   ^~
2025-09-08T04:25:46,675   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:46,675                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:46,675                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2025-09-08T04:25:46,675   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:46,675      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:46,675         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:46,676   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:46,676                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:46,676   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:46,676     117 |     struct unary_function
2025-09-08T04:25:46,676         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:50,642   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:50,642                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:50,642                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2025-09-08T04:25:50,642   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:50,642      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:50,642         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:50,643   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:50,643                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:50,643   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:50,643     117 |     struct unary_function
2025-09-08T04:25:50,643         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:50,902   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:25:50,903   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:25:50,903     103 |   if (&(node) == NULL)
2025-09-08T04:25:50,903         |               ^
2025-09-08T04:25:50,903   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2025-09-08T04:25:50,903     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:25:50,903         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:25:51,309   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:25:51,309     103 |   if (&(node) == NULL)
2025-09-08T04:25:51,309         |   ^~
2025-09-08T04:25:54,426   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:54,426                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:54,426                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2025-09-08T04:25:54,426   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:54,426      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:54,426         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:54,427   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:54,427                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:54,427   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:54,427     117 |     struct unary_function
2025-09-08T04:25:54,428         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:58,110   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:25:58,110                    from ./base//sbml/Model.h:446,
2025-09-08T04:25:58,110                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2025-09-08T04:25:58,110   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:25:58,110      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:25:58,110         |                           ^~~~~~~~~~~~~~
2025-09-08T04:25:58,111   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:25:58,111                    from ./base//sbml/Model.h:444:
2025-09-08T04:25:58,111   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:25:58,111     117 |     struct unary_function
2025-09-08T04:25:58,111         |            ^~~~~~~~~~~~~~
2025-09-08T04:25:58,371   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:25:58,371   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:25:58,371     104 |   if (&(node) == NULL)
2025-09-08T04:25:58,371         |               ^
2025-09-08T04:25:58,371   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T04:25:58,371     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:25:58,372         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:25:58,780   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:25:58,780     104 |   if (&(node) == NULL)
2025-09-08T04:25:58,781         |   ^~
2025-09-08T04:26:01,998   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:26:01,998                    from ./base//sbml/Model.h:446,
2025-09-08T04:26:01,999                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2025-09-08T04:26:01,999   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:01,999      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:01,999         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:02,000   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:02,000                    from ./base//sbml/Model.h:444:
2025-09-08T04:26:02,000   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:02,000     117 |     struct unary_function
2025-09-08T04:26:02,000         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:05,745   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:26:05,745                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:26:05,745                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:26:05,746                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T04:26:05,746                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2025-09-08T04:26:05,746   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:05,746      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:05,746         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:05,747   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:05,747                    from ./base/sbml/validator/constraints/IdBase.h:42:
2025-09-08T04:26:05,747   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:05,747     117 |     struct unary_function
2025-09-08T04:26:05,747         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:09,370   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:26:09,370                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:26:09,370                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:26:09,370                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2025-09-08T04:26:09,370   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:09,370      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:09,370         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:09,371   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:09,371                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:26:09,371   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:09,371     117 |     struct unary_function
2025-09-08T04:26:09,371         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:13,007   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:26:13,007                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:26:13,007                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:26:13,007                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2025-09-08T04:26:13,007   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:13,007      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:13,007         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:13,008   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:13,008                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:26:13,008                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:26:13,008                    from ./base//sbml/SBO.h:196,
2025-09-08T04:26:13,009                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2025-09-08T04:26:13,009   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:13,009     117 |     struct unary_function
2025-09-08T04:26:13,009         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:16,510   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:26:16,510                    from ./base//sbml/Model.h:446,
2025-09-08T04:26:16,510                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2025-09-08T04:26:16,510   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:16,510      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:16,510         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:16,511   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:16,511                    from ./base//sbml/Model.h:444:
2025-09-08T04:26:16,511   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:16,511     117 |     struct unary_function
2025-09-08T04:26:16,511         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:20,837   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:26:20,837                    from ./base//sbml/Model.h:446,
2025-09-08T04:26:20,837                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2025-09-08T04:26:20,837   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:20,837      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:20,837         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:20,838   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:20,838                    from ./base//sbml/Model.h:444:
2025-09-08T04:26:20,838   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:20,838     117 |     struct unary_function
2025-09-08T04:26:20,838         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:24,590   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:26:24,590                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:26:24,590                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2025-09-08T04:26:24,591   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:24,591      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:24,591         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:24,592   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:24,592                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:26:24,592                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:26:24,592                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:26:24,592                    from ./base//sbml/SBase.h:145,
2025-09-08T04:26:24,592                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2025-09-08T04:26:24,592   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:24,592     117 |     struct unary_function
2025-09-08T04:26:24,592         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:28,041   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:26:28,041                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:26:28,041                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2025-09-08T04:26:28,041   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:28,041      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:28,042         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:28,042   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:28,043                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:26:28,043                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:26:28,043                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:26:28,043                    from ./base//sbml/SBase.h:145,
2025-09-08T04:26:28,043                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2025-09-08T04:26:28,043   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:28,043     117 |     struct unary_function
2025-09-08T04:26:28,043         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:31,503   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:26:31,503                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:26:31,503                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2025-09-08T04:26:31,503   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:31,503      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:31,503         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:31,504   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:31,504                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:26:31,504                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:26:31,504                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:26:31,505                    from ./base//sbml/SBase.h:145,
2025-09-08T04:26:31,505                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2025-09-08T04:26:31,505   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:31,505     117 |     struct unary_function
2025-09-08T04:26:31,505         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:34,959   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:26:34,959                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:26:34,959                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2025-09-08T04:26:34,960   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:34,960      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:34,960         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:34,961   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:34,961                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:26:34,961                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:26:34,961                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:26:34,961                    from ./base//sbml/SBase.h:145,
2025-09-08T04:26:34,961                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2025-09-08T04:26:34,961   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:34,961     117 |     struct unary_function
2025-09-08T04:26:34,961         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:38,393   In file included from ./base//sbml/Rule.h:141,
2025-09-08T04:26:38,393                    from ./base//sbml/AssignmentRule.h:147,
2025-09-08T04:26:38,393                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2025-09-08T04:26:38,393   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:38,393      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:38,394         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:38,394   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:38,395                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:26:38,395                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:26:38,395                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:26:38,395                    from ./base//sbml/SBase.h:145,
2025-09-08T04:26:38,395                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2025-09-08T04:26:38,395   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:38,395     117 |     struct unary_function
2025-09-08T04:26:38,395         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:41,881   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:26:41,881                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:26:41,881                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:26:41,881                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2025-09-08T04:26:41,882   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:41,882      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:41,882         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:41,882   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:41,883                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:26:41,883                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:26:41,883                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:26:41,883                    from ./base//sbml/SBase.h:145,
2025-09-08T04:26:41,883                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2025-09-08T04:26:41,883   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:41,883     117 |     struct unary_function
2025-09-08T04:26:41,883         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:45,432   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:26:45,432                    from ./base//sbml/Model.h:446,
2025-09-08T04:26:45,433                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2025-09-08T04:26:45,433   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:45,433      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:45,433         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:45,434   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:45,434                    from ./base//sbml/Model.h:444:
2025-09-08T04:26:45,434   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:45,434     117 |     struct unary_function
2025-09-08T04:26:45,434         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:45,692   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:26:45,692   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:26:45,692     104 |   if (&(node) == NULL)
2025-09-08T04:26:45,692         |               ^
2025-09-08T04:26:45,692   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2025-09-08T04:26:45,692     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:26:45,692         |                                             ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:26:46,090   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:26:46,090     104 |   if (&(node) == NULL)
2025-09-08T04:26:46,090         |   ^~
2025-09-08T04:26:49,138   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:26:49,138                    from ./base//sbml/Model.h:446,
2025-09-08T04:26:49,138                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2025-09-08T04:26:49,138   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:49,138      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:49,138         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:49,139   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:49,139                    from ./base//sbml/Model.h:444:
2025-09-08T04:26:49,139   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:49,139     117 |     struct unary_function
2025-09-08T04:26:49,139         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:49,397   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:26:49,397   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:26:49,398     104 |   if (&(node) == NULL)
2025-09-08T04:26:49,398         |               ^
2025-09-08T04:26:49,398   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2025-09-08T04:26:49,398     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:26:49,398         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:26:49,805   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:26:49,805     104 |   if (&(node) == NULL)
2025-09-08T04:26:49,805         |   ^~
2025-09-08T04:26:52,952   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:26:52,952                    from ./base//sbml/Model.h:446,
2025-09-08T04:26:52,952                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2025-09-08T04:26:52,952   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:52,952      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:52,952         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:52,953   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:52,953                    from ./base//sbml/Model.h:444:
2025-09-08T04:26:52,953   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:52,954     117 |     struct unary_function
2025-09-08T04:26:52,954         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:57,058   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:26:57,059                    from ./base//sbml/Model.h:446,
2025-09-08T04:26:57,059                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2025-09-08T04:26:57,059   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:26:57,059      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:26:57,059         |                           ^~~~~~~~~~~~~~
2025-09-08T04:26:57,060   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:26:57,060                    from ./base//sbml/Model.h:444:
2025-09-08T04:26:57,060   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:26:57,060     117 |     struct unary_function
2025-09-08T04:26:57,060         |            ^~~~~~~~~~~~~~
2025-09-08T04:26:57,318   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:26:57,318   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:26:57,318     100 |   if (&(node) == NULL)
2025-09-08T04:26:57,318         |               ^
2025-09-08T04:26:57,318   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2025-09-08T04:26:57,318      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:26:57,319         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:26:57,716   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:26:57,716     100 |   if (&(node) == NULL)
2025-09-08T04:26:57,716         |   ^~
2025-09-08T04:27:00,791   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:00,792                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:00,792                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2025-09-08T04:27:00,792   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:00,792      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:00,792         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:00,793   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:00,793                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:00,793   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:00,793     117 |     struct unary_function
2025-09-08T04:27:00,793         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:04,935   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:27:04,935                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:27:04,935                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:27:04,935                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2025-09-08T04:27:04,935   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:04,935      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:04,936         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:04,936   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:04,936                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:27:04,937   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:04,937     117 |     struct unary_function
2025-09-08T04:27:04,937         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:08,297   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:27:08,297                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:27:08,297                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:27:08,297                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2025-09-08T04:27:08,297   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:08,297      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:08,297         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:08,298   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:08,298                    from ./base//sbml/validator/VConstraint.h:47:
2025-09-08T04:27:08,298   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:08,299     117 |     struct unary_function
2025-09-08T04:27:08,299         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:11,842   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:11,842                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:11,842                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2025-09-08T04:27:11,842   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:11,842      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:11,842         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:11,843   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:11,843                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:11,843   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:11,844     117 |     struct unary_function
2025-09-08T04:27:11,844         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:12,102   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:27:12,103   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:27:12,103     100 |   if (&(node) == NULL)
2025-09-08T04:27:12,103         |               ^
2025-09-08T04:27:12,103   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2025-09-08T04:27:12,103      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:27:12,103         |                                                 ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:27:12,515   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:27:12,515     100 |   if (&(node) == NULL)
2025-09-08T04:27:12,515         |   ^~
2025-09-08T04:27:15,747   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:15,747                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:15,747                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2025-09-08T04:27:15,747   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:15,747      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:15,747         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:15,748   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:15,748                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:15,748   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:15,748     117 |     struct unary_function
2025-09-08T04:27:15,748         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:16,006   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:27:16,006   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:27:16,006     105 |   if (&(node) == NULL)
2025-09-08T04:27:16,006         |               ^
2025-09-08T04:27:16,007   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2025-09-08T04:27:16,007     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:27:16,007         |                                                  ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:27:16,405   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:27:16,406     105 |   if (&(node) == NULL)
2025-09-08T04:27:16,406         |   ^~
2025-09-08T04:27:19,481   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:19,481                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:19,481                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2025-09-08T04:27:19,481   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:19,481      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:19,482         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:19,482   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:19,482                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:19,482   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:19,483     117 |     struct unary_function
2025-09-08T04:27:19,483         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:19,740   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:27:19,740   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:27:19,740     104 |   if (&(node) == NULL)
2025-09-08T04:27:19,740         |               ^
2025-09-08T04:27:19,740   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2025-09-08T04:27:19,741     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:27:19,741         |                                                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:27:20,138   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:27:20,138     104 |   if (&(node) == NULL)
2025-09-08T04:27:20,138         |   ^~
2025-09-08T04:27:23,203   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:23,203                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:23,203                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2025-09-08T04:27:23,203   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:23,204      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:23,204         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:23,204   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:23,205                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:23,205   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:23,205     117 |     struct unary_function
2025-09-08T04:27:23,205         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:25,710   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2025-09-08T04:27:25,710   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2025-09-08T04:27:25,710     188 |       sprintf(react, "KL_%u", n);
2025-09-08T04:27:25,710         |                          ^~
2025-09-08T04:27:25,711   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2025-09-08T04:27:25,711     188 |       sprintf(react, "KL_%u", n);
2025-09-08T04:27:25,711         |                      ^~~~~~~
2025-09-08T04:27:25,711   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2025-09-08T04:27:25,711     188 |       sprintf(react, "KL_%u", n);
2025-09-08T04:27:25,711         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T04:27:25,712   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2025-09-08T04:27:25,712     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T04:27:25,712         |                         ^~
2025-09-08T04:27:25,712   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2025-09-08T04:27:25,713     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T04:27:25,713         |                   ^~~~~~~~~
2025-09-08T04:27:25,713   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2025-09-08T04:27:25,713     179 |     sprintf(rule, "rule_%u", n);
2025-09-08T04:27:25,713         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T04:27:35,523   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:27:35,523                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:27:35,523                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:27:35,523                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2025-09-08T04:27:35,523                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2025-09-08T04:27:35,523   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:35,523      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:35,523         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:35,524   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:35,524                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2025-09-08T04:27:35,524   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:35,525     117 |     struct unary_function
2025-09-08T04:27:35,525         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:39,004   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:39,005                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:39,005                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2025-09-08T04:27:39,005   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:39,005      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:39,005         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:39,006   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:39,006                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:39,006   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:39,006     117 |     struct unary_function
2025-09-08T04:27:39,006         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:39,267   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:27:39,267   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:27:39,268     100 |   if (&(node) == NULL)
2025-09-08T04:27:39,268         |               ^
2025-09-08T04:27:39,268   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2025-09-08T04:27:39,268      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:27:39,268         |                                                   ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:27:39,674   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:27:39,674     100 |   if (&(node) == NULL)
2025-09-08T04:27:39,674         |   ^~
2025-09-08T04:27:42,723   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:42,723                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:42,723                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2025-09-08T04:27:42,724   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:42,724      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:42,724         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:42,724   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:42,725                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:42,725   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:42,725     117 |     struct unary_function
2025-09-08T04:27:42,725         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:42,983   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:27:42,983   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:27:42,984     103 |   if (&(node) == NULL)
2025-09-08T04:27:42,984         |               ^
2025-09-08T04:27:42,984   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2025-09-08T04:27:42,984     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:27:42,984         |                                                     ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:27:43,383   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:27:43,383     103 |   if (&(node) == NULL)
2025-09-08T04:27:43,383         |   ^~
2025-09-08T04:27:46,468   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:46,468                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:46,468                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2025-09-08T04:27:46,468   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:46,468      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:46,468         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:46,469   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:46,469                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:46,469   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:46,469     117 |     struct unary_function
2025-09-08T04:27:46,469         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:50,937   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:27:50,937                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:27:50,937                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:27:50,937                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2025-09-08T04:27:50,937   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:50,938      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:50,938         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:50,938   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:50,939                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:27:50,939                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:27:50,939                    from ./base//sbml/SBO.h:196,
2025-09-08T04:27:50,939                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2025-09-08T04:27:50,939   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:50,939     117 |     struct unary_function
2025-09-08T04:27:50,939         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:54,546   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:54,546                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:54,546                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2025-09-08T04:27:54,546   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:54,546      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:54,546         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:54,547   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:54,547                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:54,547   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:54,548     117 |     struct unary_function
2025-09-08T04:27:54,548         |            ^~~~~~~~~~~~~~
2025-09-08T04:27:58,456   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:27:58,456                    from ./base//sbml/Model.h:446,
2025-09-08T04:27:58,456                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2025-09-08T04:27:58,457   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:27:58,457      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:27:58,457         |                           ^~~~~~~~~~~~~~
2025-09-08T04:27:58,458   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:27:58,458                    from ./base//sbml/Model.h:444:
2025-09-08T04:27:58,458   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:27:58,458     117 |     struct unary_function
2025-09-08T04:27:58,458         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:02,411   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:28:02,411                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:28:02,411                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:28:02,411                    from ./base/sbml/validator/constraints/IdBase.h:43,
2025-09-08T04:28:02,411                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2025-09-08T04:28:02,411                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2025-09-08T04:28:02,411   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:02,411      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:02,412         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:02,412   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:02,412                    from ./base//sbml/xml/XMLAttributes.h:234,
2025-09-08T04:28:02,413                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2025-09-08T04:28:02,413                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2025-09-08T04:28:02,413                    from ./base//sbml/SBase.h:145,
2025-09-08T04:28:02,413                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2025-09-08T04:28:02,413   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:02,413     117 |     struct unary_function
2025-09-08T04:28:02,413         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:06,872   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:06,872                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:06,872                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2025-09-08T04:28:06,872   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:06,873      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:06,873         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:06,873   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:06,874                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:06,874   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:06,874     117 |     struct unary_function
2025-09-08T04:28:06,874         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:10,369   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:10,369                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:10,369                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2025-09-08T04:28:10,369   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:10,369      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:10,369         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:10,370   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:10,370                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:10,370   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:10,371     117 |     struct unary_function
2025-09-08T04:28:10,371         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:13,889   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:13,889                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:13,889                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2025-09-08T04:28:13,890   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:13,890      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:13,890         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:13,890   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:13,891                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:13,891   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:13,891     117 |     struct unary_function
2025-09-08T04:28:13,891         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:17,394   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:28:17,394                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:28:17,395                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:28:17,395                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2025-09-08T04:28:17,395                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2025-09-08T04:28:17,395   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:17,395      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:17,395         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:17,396   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:17,396                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2025-09-08T04:28:17,396   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:17,396     117 |     struct unary_function
2025-09-08T04:28:17,396         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:22,258   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:22,258                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:22,258                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2025-09-08T04:28:22,258   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:22,258      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:22,259         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:22,259   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:22,259                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:22,259   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:22,260     117 |     struct unary_function
2025-09-08T04:28:22,260         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:26,213   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:26,214                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:26,214                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2025-09-08T04:28:26,214   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:26,214      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:26,214         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:26,215   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:26,215                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:26,215   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:26,215     117 |     struct unary_function
2025-09-08T04:28:26,215         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:29,723   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:29,724                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:29,724                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2025-09-08T04:28:29,724   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:29,724      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:29,724         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:29,725   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:29,725                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:29,725   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:29,725     117 |     struct unary_function
2025-09-08T04:28:29,725         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:33,304   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:33,304                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:33,304                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2025-09-08T04:28:33,305   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:33,305      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:33,305         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:33,305   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:33,306                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:33,306   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:33,306     117 |     struct unary_function
2025-09-08T04:28:33,306         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:36,902   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:36,902                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:36,903                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2025-09-08T04:28:36,903   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:36,903      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:36,903         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:36,904   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:36,904                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:36,904   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:36,904     117 |     struct unary_function
2025-09-08T04:28:36,904         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:40,502   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:40,502                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:40,502                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2025-09-08T04:28:40,502   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:40,502      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:40,502         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:40,503   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:40,503                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:40,503   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:40,503     117 |     struct unary_function
2025-09-08T04:28:40,503         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:44,107   In file included from ./base//sbml/UnitDefinition.h:256,
2025-09-08T04:28:44,107                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2025-09-08T04:28:44,108                    from ./base//sbml/validator/VConstraint.h:51,
2025-09-08T04:28:44,108                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2025-09-08T04:28:44,108   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:44,108      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:44,108         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:44,109   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:44,109                    from ./base//sbml/xml/XMLNamespaces.h:70,
2025-09-08T04:28:44,109                    from ./base//sbml/SBMLNamespaces.h:99,
2025-09-08T04:28:44,109                    from ./base//sbml/SBO.h:196,
2025-09-08T04:28:44,109                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2025-09-08T04:28:44,109   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:44,109     117 |     struct unary_function
2025-09-08T04:28:44,110         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:47,765   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:47,766                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:47,766                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2025-09-08T04:28:47,766   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:47,766      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:47,766         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:47,767   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:47,767                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:47,767   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:47,767     117 |     struct unary_function
2025-09-08T04:28:47,767         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:51,634   In file included from ./base//sbml/FunctionDefinition.h:123,
2025-09-08T04:28:51,635                    from ./base//sbml/Model.h:446,
2025-09-08T04:28:51,635                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2025-09-08T04:28:51,635   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:28:51,635      95 | struct IdEq : public std::unary_function<SBase*, bool>
2025-09-08T04:28:51,635         |                           ^~~~~~~~~~~~~~
2025-09-08T04:28:51,636   In file included from /usr/include/c++/14/string:49,
2025-09-08T04:28:51,636                    from ./base//sbml/Model.h:444:
2025-09-08T04:28:51,636   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:28:51,636     117 |     struct unary_function
2025-09-08T04:28:51,636         |            ^~~~~~~~~~~~~~
2025-09-08T04:28:51,894   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2025-09-08T04:28:51,895   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:28:51,895     100 |   if (&(node) == NULL)
2025-09-08T04:28:51,895         |               ^
2025-09-08T04:28:51,895   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2025-09-08T04:28:51,895      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2025-09-08T04:28:51,895         |                                               ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:28:52,291   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:28:52,292     100 |   if (&(node) == NULL)
2025-09-08T04:28:52,292         |   ^~
2025-09-08T04:29:03,020   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T04:29:03,020   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:29:03,020      90 |   if (&orig == NULL)
2025-09-08T04:29:03,020         |             ^
2025-09-08T04:29:03,020   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2025-09-08T04:29:03,021      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2025-09-08T04:29:03,021         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:03,026   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T04:29:03,026   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:29:03,026     110 |   if (&rhs == NULL)
2025-09-08T04:29:03,026         |            ^
2025-09-08T04:29:03,026   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2025-09-08T04:29:03,026     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2025-09-08T04:29:03,026         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:03,028   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T04:29:03,028   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:03,029     149 |   if (&name == NULL || &value == NULL
2025-09-08T04:29:03,029         |             ^
2025-09-08T04:29:03,029   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2025-09-08T04:29:03,029     144 | XMLAttributes::add (const std::string& name,
2025-09-08T04:29:03,029         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:03,029   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:03,029     149 |   if (&name == NULL || &value == NULL
2025-09-08T04:29:03,030         |                               ^
2025-09-08T04:29:03,030   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2025-09-08T04:29:03,030     145 |                     const std::string& value,
2025-09-08T04:29:03,030         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:03,030   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2025-09-08T04:29:03,030     150 |                     || &namespaceURI == NULL
2025-09-08T04:29:03,030         |                                      ^
2025-09-08T04:29:03,031   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2025-09-08T04:29:03,031     146 |                     const std::string& namespaceURI,
2025-09-08T04:29:03,031         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-09-08T04:29:03,031   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T04:29:03,031     151 |                     || &prefix == NULL)
2025-09-08T04:29:03,031         |                                ^
2025-09-08T04:29:03,031   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2025-09-08T04:29:03,032     147 |                     const std::string& prefix)
2025-09-08T04:29:03,032         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:03,033   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T04:29:03,034   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:03,034     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:03,034         |               ^
2025-09-08T04:29:03,034   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2025-09-08T04:29:03,034     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T04:29:03,034         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:03,035   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:03,035     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:03,035         |                                 ^
2025-09-08T04:29:03,035   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2025-09-08T04:29:03,035     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2025-09-08T04:29:03,035         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:03,041   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T04:29:03,041   ./base/sbml/xml/XMLAttributes.cpp:281:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:03,041     281 |   if (&name == NULL) return -1;
2025-09-08T04:29:03,041         |             ^
2025-09-08T04:29:03,041   ./base/sbml/xml/XMLAttributes.cpp:279:45: note: ‘name’ declared here
2025-09-08T04:29:03,042     279 | XMLAttributes::getIndex (const std::string& name) const
2025-09-08T04:29:03,042         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:03,043   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T04:29:03,044   ./base/sbml/xml/XMLAttributes.cpp:301:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:03,044     301 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T04:29:03,044         |             ^
2025-09-08T04:29:03,044   ./base/sbml/xml/XMLAttributes.cpp:299:45: note: ‘name’ declared here
2025-09-08T04:29:03,044     299 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T04:29:03,044         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:03,044   ./base/sbml/xml/XMLAttributes.cpp:301:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:29:03,045     301 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T04:29:03,045         |                             ^
2025-09-08T04:29:03,045   ./base/sbml/xml/XMLAttributes.cpp:299:70: note: ‘uri’ declared here
2025-09-08T04:29:03,045     299 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2025-09-08T04:29:03,045         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:03,047   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T04:29:03,047   ./base/sbml/xml/XMLAttributes.cpp:320:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:03,047     320 |   if (&triple  == NULL) return -1;
2025-09-08T04:29:03,047         |                ^
2025-09-08T04:29:03,047   ./base/sbml/xml/XMLAttributes.cpp:318:43: note: ‘triple’ declared here
2025-09-08T04:29:03,048     318 | XMLAttributes::getIndex (const XMLTriple& triple) const
2025-09-08T04:29:03,048         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:03,053   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,054   ./base/sbml/xml/XMLAttributes.cpp:541:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:03,054     541 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T04:29:03,054         |                ^
2025-09-08T04:29:03,054   ./base/sbml/xml/XMLAttributes.cpp:529:41: note: ‘value’ declared here
2025-09-08T04:29:03,054     529 |                          , bool&        value
2025-09-08T04:29:03,054         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:03,057   ./base/sbml/xml/XMLAttributes.cpp:560:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:03,057     560 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T04:29:03,057         |                                          ^
2025-09-08T04:29:03,057   ./base/sbml/xml/XMLAttributes.cpp:528:47: note: ‘name’ declared here
2025-09-08T04:29:03,057     528 |                          , const std::string& name
2025-09-08T04:29:03,057         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:03,059   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,059   ./base/sbml/xml/XMLAttributes.cpp:618:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:03,059     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T04:29:03,059         |               ^
2025-09-08T04:29:03,059   ./base/sbml/xml/XMLAttributes.cpp:611:45: note: ‘triple’ declared here
2025-09-08T04:29:03,059     611 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T04:29:03,059         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:03,060   ./base/sbml/xml/XMLAttributes.cpp:618:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:03,060     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T04:29:03,060         |                                 ^
2025-09-08T04:29:03,060   ./base/sbml/xml/XMLAttributes.cpp:612:45: note: ‘value’ declared here
2025-09-08T04:29:03,060     612 |                          , bool&            value
2025-09-08T04:29:03,060         |                            ~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:03,062   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,062   ./base/sbml/xml/XMLAttributes.cpp:655:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:03,062     655 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T04:29:03,062         |                 ^
2025-09-08T04:29:03,062   ./base/sbml/xml/XMLAttributes.cpp:643:41: note: ‘value’ declared here
2025-09-08T04:29:03,062     643 |                          , double&      value
2025-09-08T04:29:03,063         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:03,066   ./base/sbml/xml/XMLAttributes.cpp:703:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:03,066     703 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T04:29:03,066         |                                          ^
2025-09-08T04:29:03,066   ./base/sbml/xml/XMLAttributes.cpp:642:47: note: ‘name’ declared here
2025-09-08T04:29:03,066     642 |                          , const std::string& name
2025-09-08T04:29:03,066         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:03,069   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,069   ./base/sbml/xml/XMLAttributes.cpp:801:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:03,069     801 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T04:29:03,069         |                                     ^
2025-09-08T04:29:03,069   ./base/sbml/xml/XMLAttributes.cpp:789:41: note: ‘value’ declared here
2025-09-08T04:29:03,070     789 |                          , long&        value
2025-09-08T04:29:03,070         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:03,071   ./base/sbml/xml/XMLAttributes.cpp:821:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:03,071     821 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T04:29:03,071         |                                          ^
2025-09-08T04:29:03,071   ./base/sbml/xml/XMLAttributes.cpp:788:65: note: ‘name’ declared here
2025-09-08T04:29:03,071     788 |                                            , const std::string& name
2025-09-08T04:29:03,071         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:03,072   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,073   ./base/sbml/xml/XMLAttributes.cpp:856:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:03,073     856 |   if (&triple == NULL) return false;
2025-09-08T04:29:03,073         |               ^
2025-09-08T04:29:03,073   ./base/sbml/xml/XMLAttributes.cpp:849:45: note: ‘triple’ declared here
2025-09-08T04:29:03,073     849 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T04:29:03,073         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:03,075   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,075   ./base/sbml/xml/XMLAttributes.cpp:945:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:03,075     945 |   if (&triple == NULL) return false;
2025-09-08T04:29:03,075         |               ^
2025-09-08T04:29:03,075   ./base/sbml/xml/XMLAttributes.cpp:938:45: note: ‘triple’ declared here
2025-09-08T04:29:03,076     938 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T04:29:03,076         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:03,077   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,078   ./base/sbml/xml/XMLAttributes.cpp:1037:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:03,078    1037 |   if (&triple == NULL) return false;
2025-09-08T04:29:03,078         |               ^
2025-09-08T04:29:03,078   ./base/sbml/xml/XMLAttributes.cpp:1030:45: note: ‘triple’ declared here
2025-09-08T04:29:03,078    1030 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T04:29:03,078         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:03,080   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,080   ./base/sbml/xml/XMLAttributes.cpp:1091:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:03,080    1091 |   if ( index != -1 && &value != NULL)
2025-09-08T04:29:03,080         |                              ^
2025-09-08T04:29:03,080   ./base/sbml/xml/XMLAttributes.cpp:1083:41: note: ‘value’ declared here
2025-09-08T04:29:03,080    1083 |                          , std::string& value
2025-09-08T04:29:03,080         |                            ~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:03,082   ./base/sbml/xml/XMLAttributes.cpp:1099:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:03,082    1099 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T04:29:03,082         |                                                      ^
2025-09-08T04:29:03,082   ./base/sbml/xml/XMLAttributes.cpp:1082:47: note: ‘name’ declared here
2025-09-08T04:29:03,082    1082 |                          , const std::string& name
2025-09-08T04:29:03,082         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:03,083   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,083   ./base/sbml/xml/XMLAttributes.cpp:1127:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:03,083    1127 |   if (&triple == NULL) return false;
2025-09-08T04:29:03,084         |               ^
2025-09-08T04:29:03,084   ./base/sbml/xml/XMLAttributes.cpp:1120:45: note: ‘triple’ declared here
2025-09-08T04:29:03,084    1120 | XMLAttributes::readInto (  const XMLTriple& triple
2025-09-08T04:29:03,084         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:03,448   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2025-09-08T04:29:03,448   ./base/sbml/xml/XMLAttributes.cpp:320:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,448     320 |   if (&triple  == NULL) return -1;
2025-09-08T04:29:03,448         |   ^~
2025-09-08T04:29:03,460   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2025-09-08T04:29:03,461   ./base/sbml/xml/XMLAttributes.cpp:281:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,461     281 |   if (&name == NULL) return -1;
2025-09-08T04:29:03,461         |   ^~
2025-09-08T04:29:03,462   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2025-09-08T04:29:03,462   ./base/sbml/xml/XMLAttributes.cpp:301:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,462     301 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T04:29:03,463         |             ^
2025-09-08T04:29:03,463   ./base/sbml/xml/XMLAttributes.cpp:301:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,463     301 |   if (&name == NULL || &uri == NULL) return -1;
2025-09-08T04:29:03,463         |                             ^
2025-09-08T04:29:03,475   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2025-09-08T04:29:03,475   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,475      90 |   if (&orig == NULL)
2025-09-08T04:29:03,476         |   ^~
2025-09-08T04:29:03,476   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2025-09-08T04:29:03,477   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,477     110 |   if (&rhs == NULL)
2025-09-08T04:29:03,477         |   ^~
2025-09-08T04:29:03,482   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2025-09-08T04:29:03,482   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,482     149 |   if (&name == NULL || &value == NULL
2025-09-08T04:29:03,482         |             ^
2025-09-08T04:29:03,482   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,483     149 |   if (&name == NULL || &value == NULL
2025-09-08T04:29:03,483         |                               ^
2025-09-08T04:29:03,483   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,483     150 |                     || &namespaceURI == NULL
2025-09-08T04:29:03,483         |                                      ^
2025-09-08T04:29:03,483   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,483     151 |                     || &prefix == NULL)
2025-09-08T04:29:03,483         |                                ^
2025-09-08T04:29:03,484   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2025-09-08T04:29:03,484   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,484     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:03,484         |               ^
2025-09-08T04:29:03,484   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,485     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:03,485         |                                 ^
2025-09-08T04:29:03,487   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,487   ./base/sbml/xml/XMLAttributes.cpp:560:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,487     560 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T04:29:03,487         |                                 ^
2025-09-08T04:29:03,488   ./base/sbml/xml/XMLAttributes.cpp:541:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,488     541 |     if (&value != NULL && !trimmed.empty() )
2025-09-08T04:29:03,488         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T04:29:03,489   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,489   ./base/sbml/xml/XMLAttributes.cpp:618:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,489     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T04:29:03,489         |               ^
2025-09-08T04:29:03,489   ./base/sbml/xml/XMLAttributes.cpp:618:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,489     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2025-09-08T04:29:03,489         |                                 ^
2025-09-08T04:29:03,491   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,491   ./base/sbml/xml/XMLAttributes.cpp:703:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,491     703 |   if ( log != NULL && !assigned && &name != NULL)
2025-09-08T04:29:03,491         |                                 ^
2025-09-08T04:29:03,491   ./base/sbml/xml/XMLAttributes.cpp:655:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,491     655 |     if ( &value != NULL && !trimmed.empty() )
2025-09-08T04:29:03,491         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T04:29:03,493   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,493   ./base/sbml/xml/XMLAttributes.cpp:821:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,493     821 |   if ( log != NULL && !assigned && &name != NULL )
2025-09-08T04:29:03,493         |                                 ^
2025-09-08T04:29:03,493   ./base/sbml/xml/XMLAttributes.cpp:801:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,493     801 |     if ( !trimmed.empty() && &value != NULL )
2025-09-08T04:29:03,493         |                           ^
2025-09-08T04:29:03,494   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,494   ./base/sbml/xml/XMLAttributes.cpp:856:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,494     856 |   if (&triple == NULL) return false;
2025-09-08T04:29:03,494         |   ^~
2025-09-08T04:29:03,495   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,496   ./base/sbml/xml/XMLAttributes.cpp:945:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,496     945 |   if (&triple == NULL) return false;
2025-09-08T04:29:03,496         |   ^~
2025-09-08T04:29:03,497   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,497   ./base/sbml/xml/XMLAttributes.cpp:1037:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,497    1037 |   if (&triple == NULL) return false;
2025-09-08T04:29:03,497         |   ^~
2025-09-08T04:29:03,498   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,498   ./base/sbml/xml/XMLAttributes.cpp:1099:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,498    1099 |   if ( log != NULL && !assigned && required && &name != NULL )
2025-09-08T04:29:03,498         |                                                      ^
2025-09-08T04:29:03,498   ./base/sbml/xml/XMLAttributes.cpp:1091:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,499    1091 |   if ( index != -1 && &value != NULL)
2025-09-08T04:29:03,499         |                              ^
2025-09-08T04:29:03,499   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2025-09-08T04:29:03,499   ./base/sbml/xml/XMLAttributes.cpp:1127:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:03,499    1127 |   if (&triple == NULL) return false;
2025-09-08T04:29:03,500         |   ^~
2025-09-08T04:29:11,011   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T04:29:11,011   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T04:29:11,011     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T04:29:11,011         |                       ^
2025-09-08T04:29:11,011   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T04:29:11,012     322 |                     , const std::string& details
2025-09-08T04:29:11,012         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:29:11,012   ./base/sbml/xml/XMLError.cpp:382:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T04:29:11,013     382 |     if ( &details != NULL && !details.empty() )
2025-09-08T04:29:11,013         |                   ^
2025-09-08T04:29:11,013   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T04:29:11,013     322 |                     , const std::string& details
2025-09-08T04:29:11,013         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:29:11,013   ./base/sbml/xml/XMLError.cpp:403:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2025-09-08T04:29:11,013     403 |   if (&details == NULL)
2025-09-08T04:29:11,013         |                ^
2025-09-08T04:29:11,014   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2025-09-08T04:29:11,014     322 |                     , const std::string& details
2025-09-08T04:29:11,014         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:29:11,017   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T04:29:11,017   ./base/sbml/xml/XMLError.cpp:428:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:29:11,017     428 |   if (&orig == NULL)
2025-09-08T04:29:11,017         |             ^
2025-09-08T04:29:11,017   ./base/sbml/xml/XMLError.cpp:426:36: note: ‘orig’ declared here
2025-09-08T04:29:11,017     426 | XMLError::XMLError(const XMLError& orig)
2025-09-08T04:29:11,017         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:11,019   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T04:29:11,019   ./base/sbml/xml/XMLError.cpp:455:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:29:11,019     455 |   if (&rhs == NULL)
2025-09-08T04:29:11,020         |            ^
2025-09-08T04:29:11,020   ./base/sbml/xml/XMLError.cpp:453:37: note: ‘rhs’ declared here
2025-09-08T04:29:11,020     453 | XMLError::operator=(const XMLError& rhs)
2025-09-08T04:29:11,020         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:11,358   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2025-09-08T04:29:11,358   ./base/sbml/xml/XMLError.cpp:428:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:11,358     428 |   if (&orig == NULL)
2025-09-08T04:29:11,358         |   ^~
2025-09-08T04:29:11,359   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2025-09-08T04:29:11,359   ./base/sbml/xml/XMLError.cpp:455:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:11,359     455 |   if (&rhs == NULL)
2025-09-08T04:29:11,359         |   ^~
2025-09-08T04:29:11,361   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2025-09-08T04:29:11,362   ./base/sbml/xml/XMLError.cpp:403:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:11,362     403 |   if (&details == NULL)
2025-09-08T04:29:11,362         |   ^~
2025-09-08T04:29:11,362   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:11,362     349 |         if ( &details != NULL && !details.empty() )
2025-09-08T04:29:11,362         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T04:29:11,362   ./base/sbml/xml/XMLError.cpp:382:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:11,362     382 |     if ( &details != NULL && !details.empty() )
2025-09-08T04:29:11,362         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2025-09-08T04:29:14,389   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2025-09-08T04:29:14,389      96 | struct Delete : public unary_function<XMLError*, void>
2025-09-08T04:29:14,389         |                        ^~~~~~~~~~~~~~
2025-09-08T04:29:14,389   In file included from /usr/include/c++/14/functional:49,
2025-09-08T04:29:14,389                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2025-09-08T04:29:14,389   /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
2025-09-08T04:29:14,389     117 |     struct unary_function
2025-09-08T04:29:14,390         |            ^~~~~~~~~~~~~~
2025-09-08T04:29:14,392   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2025-09-08T04:29:14,392   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2025-09-08T04:29:14,392     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T04:29:14,392         |              ^
2025-09-08T04:29:14,392   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2025-09-08T04:29:14,392     118 | XMLErrorLog::add (const XMLError& error)
2025-09-08T04:29:14,392         |                   ~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:14,639   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:14,639     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2025-09-08T04:29:14,639         |   ^~
2025-09-08T04:29:16,608   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T04:29:16,608   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2025-09-08T04:29:16,608      57 |   if (&filename == NULL) return;
2025-09-08T04:29:16,608         |                 ^
2025-09-08T04:29:16,608   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2025-09-08T04:29:16,608      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2025-09-08T04:29:16,608         |                               ~~~~~~~~~~~~~~^~~~~~~~
2025-09-08T04:29:16,759   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2025-09-08T04:29:16,759   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:16,759      57 |   if (&filename == NULL) return;
2025-09-08T04:29:16,760         |   ^~
2025-09-08T04:29:24,727   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T04:29:24,728   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:29:24,728      76 |   if (&orig == NULL)
2025-09-08T04:29:24,728         |             ^
2025-09-08T04:29:24,728   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2025-09-08T04:29:24,728      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2025-09-08T04:29:24,728         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:24,731   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T04:29:24,731   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:29:24,731      93 |   if (&rhs == NULL)
2025-09-08T04:29:24,731         |            ^
2025-09-08T04:29:24,731   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2025-09-08T04:29:24,731      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2025-09-08T04:29:24,731         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:24,732   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T04:29:24,732   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:29:24,732     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:24,732         |            ^
2025-09-08T04:29:24,733   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2025-09-08T04:29:24,733     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T04:29:24,733         |                     ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:24,733   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T04:29:24,733     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:24,733         |                               ^
2025-09-08T04:29:24,733   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2025-09-08T04:29:24,733     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2025-09-08T04:29:24,733         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:24,748   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T04:29:24,748   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T04:29:24,748     322 |   if (&prefix == NULL) return std::string();
2025-09-08T04:29:24,749         |               ^
2025-09-08T04:29:24,749   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2025-09-08T04:29:24,749     320 | XMLNamespaces::getURI (const std::string& prefix) const
2025-09-08T04:29:24,749         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:24,750   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T04:29:24,750   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:29:24,750     348 |   if (&uri == NULL) return false;
2025-09-08T04:29:24,750         |            ^
2025-09-08T04:29:24,750   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2025-09-08T04:29:24,750     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2025-09-08T04:29:24,751         |                            ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:24,751   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T04:29:24,751   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T04:29:24,751     359 |   if (&prefix == NULL) return false;
2025-09-08T04:29:24,751         |               ^
2025-09-08T04:29:24,751   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2025-09-08T04:29:24,751     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2025-09-08T04:29:24,751         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:24,751   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T04:29:24,751   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:29:24,752     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T04:29:24,752         |            ^
2025-09-08T04:29:24,752   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2025-09-08T04:29:24,752     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T04:29:24,752         |                           ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:24,752   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T04:29:24,752     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T04:29:24,752         |                               ^
2025-09-08T04:29:24,752   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2025-09-08T04:29:24,753     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2025-09-08T04:29:24,753         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:25,144   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2025-09-08T04:29:25,144   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:25,144     322 |   if (&prefix == NULL) return std::string();
2025-09-08T04:29:25,144         |   ^~
2025-09-08T04:29:25,145   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2025-09-08T04:29:25,145   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:25,145     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T04:29:25,145         |            ^
2025-09-08T04:29:25,145   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:25,145     370 |   if (&uri == NULL || &prefix == NULL) return false;
2025-09-08T04:29:25,145         |                               ^
2025-09-08T04:29:25,146   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2025-09-08T04:29:25,146   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:25,146     348 |   if (&uri == NULL) return false;
2025-09-08T04:29:25,146         |   ^~
2025-09-08T04:29:25,147   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2025-09-08T04:29:25,147   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:25,147     359 |   if (&prefix == NULL) return false;
2025-09-08T04:29:25,147         |   ^~
2025-09-08T04:29:25,153   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2025-09-08T04:29:25,153   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:25,153      76 |   if (&orig == NULL)
2025-09-08T04:29:25,153         |   ^~
2025-09-08T04:29:25,153   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2025-09-08T04:29:25,153   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:25,153      93 |   if (&rhs == NULL)
2025-09-08T04:29:25,153         |   ^~
2025-09-08T04:29:25,156   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2025-09-08T04:29:25,156   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:25,156     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:25,156         |            ^
2025-09-08T04:29:25,156   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:25,156     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:25,156         |                               ^
2025-09-08T04:29:29,516   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T04:29:29,516   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:29:29,516     197 |   if (&rhs == NULL)
2025-09-08T04:29:29,517         |            ^
2025-09-08T04:29:29,517   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2025-09-08T04:29:29,517     195 | XMLNode::operator=(const XMLNode& rhs)
2025-09-08T04:29:29,517         |                    ~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:29,518   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T04:29:29,518   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:29:29,518     230 |   if (&(node) == NULL)
2025-09-08T04:29:29,518         |               ^
2025-09-08T04:29:29,519   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2025-09-08T04:29:29,519     226 | XMLNode::addChild (const XMLNode& node)
2025-09-08T04:29:29,519         |                    ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:29,519   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T04:29:29,519   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2025-09-08T04:29:29,519     267 |   if (&(node) == NULL)
2025-09-08T04:29:29,519         |               ^
2025-09-08T04:29:29,519   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2025-09-08T04:29:29,520     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2025-09-08T04:29:29,520         |                                       ~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:29,524   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T04:29:29,525   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:29,525     413 |   if (&name == NULL) return -1;
2025-09-08T04:29:29,525         |             ^
2025-09-08T04:29:29,525   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2025-09-08T04:29:29,525     411 | XMLNode::getIndex (const std::string& name) const
2025-09-08T04:29:29,525         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:29,526   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T04:29:29,526   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2025-09-08T04:29:29,526     435 |   if (&other == NULL) return false;
2025-09-08T04:29:29,526         |              ^
2025-09-08T04:29:29,526   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2025-09-08T04:29:29,526     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2025-09-08T04:29:29,527         |                 ~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:29,532   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T04:29:29,532   ./base/sbml/xml/XMLNode.cpp:507:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:29:29,533     507 |   if (&stream == NULL) return;
2025-09-08T04:29:29,533         |               ^
2025-09-08T04:29:29,533   ./base/sbml/xml/XMLNode.cpp:505:34: note: ‘stream’ declared here
2025-09-08T04:29:29,533     505 | XMLNode::write (XMLOutputStream& stream) const
2025-09-08T04:29:29,533         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:29,536   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T04:29:29,536   ./base/sbml/xml/XMLNode.cpp:577:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2025-09-08T04:29:29,536     577 |   if (&xmlstr == NULL) return NULL;
2025-09-08T04:29:29,536         |               ^
2025-09-08T04:29:29,536   ./base/sbml/xml/XMLNode.cpp:575:61: note: ‘xmlstr’ declared here
2025-09-08T04:29:29,537     575 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2025-09-08T04:29:29,537         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:30,001   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2025-09-08T04:29:30,001   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:30,001     413 |   if (&name == NULL) return -1;
2025-09-08T04:29:30,001         |   ^~
2025-09-08T04:29:30,002   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2025-09-08T04:29:30,002   ./base/sbml/xml/XMLNode.cpp:507:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:30,002     507 |   if (&stream == NULL) return;
2025-09-08T04:29:30,002         |   ^~
2025-09-08T04:29:30,019   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2025-09-08T04:29:30,019   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:30,019     197 |   if (&rhs == NULL)
2025-09-08T04:29:30,020         |   ^~
2025-09-08T04:29:30,021   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2025-09-08T04:29:30,021   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:30,021     230 |   if (&(node) == NULL)
2025-09-08T04:29:30,021         |   ^~
2025-09-08T04:29:30,023   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2025-09-08T04:29:30,023   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:30,023     267 |   if (&(node) == NULL)
2025-09-08T04:29:30,023         |   ^~
2025-09-08T04:29:30,025   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2025-09-08T04:29:30,026   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:30,026     435 |   if (&other == NULL) return false;
2025-09-08T04:29:30,026         |   ^~
2025-09-08T04:29:30,028   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2025-09-08T04:29:30,028   ./base/sbml/xml/XMLNode.cpp:577:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:30,028     577 |   if (&xmlstr == NULL) return NULL;
2025-09-08T04:29:30,028         |   ^~
2025-09-08T04:29:36,327   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T04:29:36,327   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2025-09-08T04:29:36,327     220 |   if (&stream == NULL)
2025-09-08T04:29:36,327         |               ^
2025-09-08T04:29:36,327   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2025-09-08T04:29:36,327     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2025-09-08T04:29:36,327         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:36,329   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T04:29:36,329   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:36,329     236 |   if(&name == NULL) return;
2025-09-08T04:29:36,329         |            ^
2025-09-08T04:29:36,329   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2025-09-08T04:29:36,329     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2025-09-08T04:29:36,330         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:36,332   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T04:29:36,332   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:36,332     270 |   if(&triple == NULL) return;
2025-09-08T04:29:36,333         |              ^
2025-09-08T04:29:36,333   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2025-09-08T04:29:36,333     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2025-09-08T04:29:36,333         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:36,335   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T04:29:36,335   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:36,335     313 |   if (&name == NULL) return;
2025-09-08T04:29:36,336         |             ^
2025-09-08T04:29:36,336   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2025-09-08T04:29:36,336     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2025-09-08T04:29:36,336         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:36,337   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T04:29:36,337   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:36,337     344 |   if (&triple == NULL) return;
2025-09-08T04:29:36,337         |               ^
2025-09-08T04:29:36,337   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2025-09-08T04:29:36,337     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2025-09-08T04:29:36,337         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:36,338   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T04:29:36,338   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:36,338     374 |   if (&name == NULL) return;
2025-09-08T04:29:36,339         |             ^
2025-09-08T04:29:36,339   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2025-09-08T04:29:36,339     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2025-09-08T04:29:36,339         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:36,340   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T04:29:36,340   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:36,340     409 |   if (&triple == NULL) return;
2025-09-08T04:29:36,341         |               ^
2025-09-08T04:29:36,341   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2025-09-08T04:29:36,341     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2025-09-08T04:29:36,341         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:36,342   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T04:29:36,342   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:36,342     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T04:29:36,343         |              ^
2025-09-08T04:29:36,343   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2025-09-08T04:29:36,343     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T04:29:36,343         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:36,343   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:36,343     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T04:29:36,343         |                                ^
2025-09-08T04:29:36,343   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2025-09-08T04:29:36,343     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2025-09-08T04:29:36,344         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:36,348   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T04:29:36,348   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:36,348     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,348         |             ^
2025-09-08T04:29:36,348   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2025-09-08T04:29:36,348     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T04:29:36,349         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:36,349   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:36,349     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,349         |                               ^
2025-09-08T04:29:36,349   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2025-09-08T04:29:36,349     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2025-09-08T04:29:36,349         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T04:29:36,350   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T04:29:36,350   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:36,350     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,350         |               ^
2025-09-08T04:29:36,350   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2025-09-08T04:29:36,351     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T04:29:36,351         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:36,351   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:36,351     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,351         |                                 ^
2025-09-08T04:29:36,351   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2025-09-08T04:29:36,351     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2025-09-08T04:29:36,351         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T04:29:36,351   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T04:29:36,352   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:36,352     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,352         |             ^
2025-09-08T04:29:36,352   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2025-09-08T04:29:36,352     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T04:29:36,352         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:36,352   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:36,352     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,352         |                               ^
2025-09-08T04:29:36,352   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2025-09-08T04:29:36,353     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2025-09-08T04:29:36,353         |                                                           ~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:36,354   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T04:29:36,354   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:36,354     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,354         |             ^
2025-09-08T04:29:36,354   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2025-09-08T04:29:36,355     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T04:29:36,355         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:36,355   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:36,355     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,355         |                               ^
2025-09-08T04:29:36,355   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2025-09-08T04:29:36,355     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2025-09-08T04:29:36,355         |                                                           ~~~~~~~~~~~~^~~~~
2025-09-08T04:29:36,357   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T04:29:36,357   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:36,357     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,357         |             ^
2025-09-08T04:29:36,357   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2025-09-08T04:29:36,357     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T04:29:36,357         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:36,357   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:36,358     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,358         |                               ^
2025-09-08T04:29:36,358   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2025-09-08T04:29:36,358     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2025-09-08T04:29:36,358         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T04:29:36,359   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T04:29:36,359   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:36,359     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,359         |               ^
2025-09-08T04:29:36,359   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2025-09-08T04:29:36,359     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T04:29:36,359         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:36,360   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:36,360     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,360         |                                 ^
2025-09-08T04:29:36,360   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2025-09-08T04:29:36,360     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2025-09-08T04:29:36,360         |                                                           ~~~~~~~~~~~^~~~~
2025-09-08T04:29:36,360   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T04:29:36,360   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:36,360     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,360         |             ^
2025-09-08T04:29:36,361   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2025-09-08T04:29:36,361     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T04:29:36,361         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:36,361   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:36,361     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,361         |                               ^
2025-09-08T04:29:36,361   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2025-09-08T04:29:36,361     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2025-09-08T04:29:36,361         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:36,362   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T04:29:36,362   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:36,362     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,362         |               ^
2025-09-08T04:29:36,363   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2025-09-08T04:29:36,363     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2025-09-08T04:29:36,363         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:36,363   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2025-09-08T04:29:36,363     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,363         |                                 ^
2025-09-08T04:29:36,363   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2025-09-08T04:29:36,363     734 |                                  , const unsigned int&  value )
2025-09-08T04:29:36,363         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:36,755   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2025-09-08T04:29:36,755   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,755     236 |   if(&name == NULL) return;
2025-09-08T04:29:36,755         |   ^~
2025-09-08T04:29:36,755   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2025-09-08T04:29:36,755   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,756     313 |   if (&name == NULL) return;
2025-09-08T04:29:36,756         |   ^~
2025-09-08T04:29:36,756   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2025-09-08T04:29:36,756   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,756     374 |   if (&name == NULL) return;
2025-09-08T04:29:36,756         |   ^~
2025-09-08T04:29:36,756   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2025-09-08T04:29:36,756   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,756     270 |   if(&triple == NULL) return;
2025-09-08T04:29:36,756         |   ^~
2025-09-08T04:29:36,757   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2025-09-08T04:29:36,757   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,757     344 |   if (&triple == NULL) return;
2025-09-08T04:29:36,757         |   ^~
2025-09-08T04:29:36,757   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2025-09-08T04:29:36,757   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,757     409 |   if (&triple == NULL) return;
2025-09-08T04:29:36,757         |   ^~
2025-09-08T04:29:36,757   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2025-09-08T04:29:36,758   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,758     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,758         |               ^
2025-09-08T04:29:36,758   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,758     564 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,758         |                                 ^
2025-09-08T04:29:36,758   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2025-09-08T04:29:36,758   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,758     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,758         |               ^
2025-09-08T04:29:36,759   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,759     691 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,759         |                                 ^
2025-09-08T04:29:36,759   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2025-09-08T04:29:36,759   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,759     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,759         |               ^
2025-09-08T04:29:36,759   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,759     736 |   if (&triple == NULL || &value == NULL) return;
2025-09-08T04:29:36,759         |                                 ^
2025-09-08T04:29:36,759   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2025-09-08T04:29:36,760   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,760     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T04:29:36,760         |              ^
2025-09-08T04:29:36,760   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,760     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2025-09-08T04:29:36,760         |                                ^
2025-09-08T04:29:36,760   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2025-09-08T04:29:36,760   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,760     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,760         |             ^
2025-09-08T04:29:36,761   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,761     534 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,761         |                               ^
2025-09-08T04:29:36,761   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2025-09-08T04:29:36,761   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,761     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,761         |             ^
2025-09-08T04:29:36,761   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,761     579 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,761         |                               ^
2025-09-08T04:29:36,762   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2025-09-08T04:29:36,762   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,762     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,762         |             ^
2025-09-08T04:29:36,762   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,762     620 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,762         |                               ^
2025-09-08T04:29:36,762   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2025-09-08T04:29:36,762   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,762     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,762         |             ^
2025-09-08T04:29:36,763   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,763     662 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,763         |                               ^
2025-09-08T04:29:36,763   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2025-09-08T04:29:36,763   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,763     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,763         |             ^
2025-09-08T04:29:36,763   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,763     706 |   if (&name == NULL || &value == NULL) return;
2025-09-08T04:29:36,763         |                               ^
2025-09-08T04:29:36,765   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2025-09-08T04:29:36,766   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:36,766     220 |   if (&stream == NULL)
2025-09-08T04:29:36,766         |   ^~
2025-09-08T04:29:43,168   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T04:29:43,168   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2025-09-08T04:29:43,168     132 |   if (&chars == NULL)
2025-09-08T04:29:43,168         |              ^
2025-09-08T04:29:43,168   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2025-09-08T04:29:43,168     123 | XMLToken::XMLToken (  const std::string&  chars
2025-09-08T04:29:43,168         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2025-09-08T04:29:43,170   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T04:29:43,170   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:29:43,170     156 |   if (&orig == NULL)
2025-09-08T04:29:43,171         |             ^
2025-09-08T04:29:43,171   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2025-09-08T04:29:43,171     154 | XMLToken::XMLToken(const XMLToken& orig)
2025-09-08T04:29:43,171         |                    ~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:43,173   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T04:29:43,173   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:29:43,174     195 |   if (&rhs == NULL)
2025-09-08T04:29:43,174         |            ^
2025-09-08T04:29:43,174   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2025-09-08T04:29:43,174     193 | XMLToken::operator=(const XMLToken& rhs)
2025-09-08T04:29:43,174         |                     ~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:43,176   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T04:29:43,177   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2025-09-08T04:29:43,177     312 |         if(&attributes == NULL)
2025-09-08T04:29:43,177         |                        ^
2025-09-08T04:29:43,177   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2025-09-08T04:29:43,177     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2025-09-08T04:29:43,177         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T04:29:43,181   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T04:29:43,182   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2025-09-08T04:29:43,182     783 |         if(&namespaces == NULL)
2025-09-08T04:29:43,182         |                        ^
2025-09-08T04:29:43,182   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2025-09-08T04:29:43,182     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2025-09-08T04:29:43,182         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2025-09-08T04:29:43,182   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T04:29:43,182   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:29:43,183     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:43,183         |            ^
2025-09-08T04:29:43,183   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2025-09-08T04:29:43,183     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T04:29:43,183         |                         ~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:43,183   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T04:29:43,183     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:43,183         |                               ^
2025-09-08T04:29:43,183   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2025-09-08T04:29:43,184     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2025-09-08T04:29:43,184         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:43,186   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T04:29:43,186   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2025-09-08T04:29:43,186    1058 |         if(&triple == NULL)
2025-09-08T04:29:43,186         |                    ^
2025-09-08T04:29:43,186   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2025-09-08T04:29:43,186    1055 | XMLToken::setTriple(const XMLTriple& triple)
2025-09-08T04:29:43,187         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:43,415   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2025-09-08T04:29:43,416   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:43,416     312 |         if(&attributes == NULL)
2025-09-08T04:29:43,416         |         ^~
2025-09-08T04:29:43,417   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2025-09-08T04:29:43,417   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:43,417     783 |         if(&namespaces == NULL)
2025-09-08T04:29:43,417         |         ^~
2025-09-08T04:29:43,418   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2025-09-08T04:29:43,418   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:43,418     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:43,418         |            ^
2025-09-08T04:29:43,418   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:43,418     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2025-09-08T04:29:43,418         |                               ^
2025-09-08T04:29:43,418   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2025-09-08T04:29:43,419   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:43,419    1058 |         if(&triple == NULL)
2025-09-08T04:29:43,419         |         ^~
2025-09-08T04:29:43,434   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2025-09-08T04:29:43,434   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:43,434     132 |   if (&chars == NULL)
2025-09-08T04:29:43,435         |   ^~
2025-09-08T04:29:43,435   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2025-09-08T04:29:43,436   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:43,436     156 |   if (&orig == NULL)
2025-09-08T04:29:43,436         |   ^~
2025-09-08T04:29:43,436   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2025-09-08T04:29:43,437   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:43,437     195 |   if (&rhs == NULL)
2025-09-08T04:29:43,437         |   ^~
2025-09-08T04:29:48,196   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T04:29:48,196   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:29:48,196     188 |   if (&element == NULL) return;
2025-09-08T04:29:48,196         |                ^
2025-09-08T04:29:48,197   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2025-09-08T04:29:48,197     186 | XMLTokenizer::startElement (const XMLToken& element)
2025-09-08T04:29:48,197         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:29:48,198   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T04:29:48,198   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2025-09-08T04:29:48,198     234 |   else if (&element != NULL)
2025-09-08T04:29:48,198         |                     ^
2025-09-08T04:29:48,198   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2025-09-08T04:29:48,199     220 | XMLTokenizer::endElement (const XMLToken& element)
2025-09-08T04:29:48,199         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:29:48,199   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T04:29:48,199   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2025-09-08T04:29:48,200     247 |   if (&data == NULL) return;
2025-09-08T04:29:48,200         |             ^
2025-09-08T04:29:48,200   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2025-09-08T04:29:48,200     245 | XMLTokenizer::characters (const XMLToken& data)
2025-09-08T04:29:48,200         |                           ~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:48,471   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2025-09-08T04:29:48,471   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:48,472     188 |   if (&element == NULL) return;
2025-09-08T04:29:48,472         |   ^~
2025-09-08T04:29:48,472   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2025-09-08T04:29:48,472   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:48,472     234 |   else if (&element != NULL)
2025-09-08T04:29:48,472         |        ^~
2025-09-08T04:29:48,473   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2025-09-08T04:29:48,473   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:48,473     247 |   if (&data == NULL) return;
2025-09-08T04:29:48,473         |   ^~
2025-09-08T04:29:51,508   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T04:29:51,508   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2025-09-08T04:29:51,508      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T04:29:51,508         |              ^
2025-09-08T04:29:51,509   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2025-09-08T04:29:51,509      58 | XMLTriple::XMLTriple (  const std::string&  name
2025-09-08T04:29:51,509         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:51,509   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2025-09-08T04:29:51,509      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T04:29:51,509         |                                ^
2025-09-08T04:29:51,509   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2025-09-08T04:29:51,509      59 |                       , const std::string&  uri
2025-09-08T04:29:51,509         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:51,509   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2025-09-08T04:29:51,510      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T04:29:51,510         |                                                     ^
2025-09-08T04:29:51,510   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2025-09-08T04:29:51,510      60 |                       , const std::string&  prefix )
2025-09-08T04:29:51,510         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2025-09-08T04:29:51,510   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T04:29:51,511   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2025-09-08T04:29:51,511      81 |   if (&triplet == NULL)
2025-09-08T04:29:51,511         |                ^
2025-09-08T04:29:51,511   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2025-09-08T04:29:51,511      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2025-09-08T04:29:51,511         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2025-09-08T04:29:51,513   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T04:29:51,514   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2025-09-08T04:29:51,514     117 |   if (&orig == NULL)
2025-09-08T04:29:51,514         |             ^
2025-09-08T04:29:51,514   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2025-09-08T04:29:51,514     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2025-09-08T04:29:51,514         |                      ~~~~~~~~~~~~~~~~~^~~~
2025-09-08T04:29:51,515   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T04:29:51,515   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2025-09-08T04:29:51,515     136 |   if (&rhs == NULL)
2025-09-08T04:29:51,515         |            ^
2025-09-08T04:29:51,515   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2025-09-08T04:29:51,516     134 | XMLTriple::operator=(const XMLTriple& rhs)
2025-09-08T04:29:51,516         |                      ~~~~~~~~~~~~~~~~~^~~
2025-09-08T04:29:51,675   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2025-09-08T04:29:51,675   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:51,675      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T04:29:51,675         |       ~~~~~~~^~~~~~~~
2025-09-08T04:29:51,675   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:51,675      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T04:29:51,675         |                          ~~~~~~^~~~~~~~
2025-09-08T04:29:51,675   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:51,676      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2025-09-08T04:29:51,676         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2025-09-08T04:29:51,676   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2025-09-08T04:29:51,676   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:51,676     117 |   if (&orig == NULL)
2025-09-08T04:29:51,676         |   ^~
2025-09-08T04:29:51,676   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2025-09-08T04:29:51,676   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:51,676     136 |   if (&rhs == NULL)
2025-09-08T04:29:51,676         |   ^~
2025-09-08T04:29:51,677   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2025-09-08T04:29:51,677   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2025-09-08T04:29:51,677      81 |   if (&triplet == NULL)
2025-09-08T04:29:51,677         |   ^~
2025-09-08T04:29:57,727   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-08T04:29:57,727   !!

2025-09-08T04:29:57,727           ********************************************************************************
2025-09-08T04:29:57,727           Please avoid running ``setup.py`` directly.
2025-09-08T04:29:57,727           Instead, use pypa/build, pypa/installer or other
2025-09-08T04:29:57,727           standards-based tools.

2025-09-08T04:29:57,728           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-08T04:29:57,728           or your builds will no longer be supported.

2025-09-08T04:29:57,728           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-08T04:29:57,728           ********************************************************************************

2025-09-08T04:29:57,728   !!
2025-09-08T04:29:57,728     self.initialize_options()
2025-09-08T04:30:13,972   Building wheel for python-libsbml (setup.py): finished with status 'done'
2025-09-08T04:30:14,279   Created wheel for python-libsbml: filename=python_libsbml-5.11.0-cp313-cp313-linux_armv7l.whl size=30831567 sha256=963eebb43a12ea16fb1e39c42cda87b174cf3de1a07ad7036258f5803f6ead01
2025-09-08T04:30:14,280   Stored in directory: /tmp/pip-ephem-wheel-cache-_k3iz1wp/wheels/81/43/f7/1cdfa6baea07696fac3e8eb1064d9575e4eb8d33b7c9466c85
2025-09-08T04:30:14,288 Successfully built python-libsbml
2025-09-08T04:30:14,351 Removed build tracker: '/tmp/pip-build-tracker-kjyzfjmv'