2025-09-08T05:29:11,254 Created temporary directory: /tmp/pip-build-tracker-n3z6hyf6
2025-09-08T05:29:11,255 Initialized build tracking at /tmp/pip-build-tracker-n3z6hyf6
2025-09-08T05:29:11,255 Created build tracker: /tmp/pip-build-tracker-n3z6hyf6
2025-09-08T05:29:11,255 Entered build tracker: /tmp/pip-build-tracker-n3z6hyf6
2025-09-08T05:29:11,256 Created temporary directory: /tmp/pip-wheel-qzzut6tv
2025-09-08T05:29:11,260 Created temporary directory: /tmp/pip-ephem-wheel-cache-9b0qktee
2025-09-08T05:29:11,323 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-08T05:29:11,326 2 location(s) to search for versions of rnaediting:
2025-09-08T05:29:11,326 * https://pypi.org/simple/rnaediting/
2025-09-08T05:29:11,326 * https://www.piwheels.org/simple/rnaediting/
2025-09-08T05:29:11,326 Fetching project page and analyzing links: https://pypi.org/simple/rnaediting/
2025-09-08T05:29:11,327 Getting page https://pypi.org/simple/rnaediting/
2025-09-08T05:29:11,328 Found index url https://pypi.org/simple/
2025-09-08T05:29:11,482 Fetched page https://pypi.org/simple/rnaediting/ as application/vnd.pypi.simple.v1+json
2025-09-08T05:29:11,484   Found link https://files.pythonhosted.org/packages/10/22/468c8f74338c4166021e5aa63294b8d6219111eb4886b15ec207de9ac789/rnaediting-0.0.3.tar.gz (from https://pypi.org/simple/rnaediting/), version: 0.0.3
2025-09-08T05:29:11,484   Found link https://files.pythonhosted.org/packages/bb/e2/73f9fc420d1d3649919f091288db62dc51b38e1dfa4e8837b6205fa56504/rnaediting-0.0.4.tar.gz (from https://pypi.org/simple/rnaediting/), version: 0.0.4
2025-09-08T05:29:11,484   Found link https://files.pythonhosted.org/packages/b2/a0/7f5084d0954e7ab5193e15554cc1d360309e95db4eae0fca2125304b2a6d/rnaediting-0.0.5.tar.gz (from https://pypi.org/simple/rnaediting/), version: 0.0.5
2025-09-08T05:29:11,485   Found link https://files.pythonhosted.org/packages/8b/ec/56deb6915d5d6ba29c43d3afee84cca1d39434108b1e8a5fc4c1e1df959b/rnaediting-0.0.6.tar.gz (from https://pypi.org/simple/rnaediting/), version: 0.0.6
2025-09-08T05:29:11,485   Found link https://files.pythonhosted.org/packages/89/80/aa69df83971ba1f3df827f732827cd217d187c145d4e82932fe68558fc99/rnaediting-0.0.7.tar.gz (from https://pypi.org/simple/rnaediting/), version: 0.0.7
2025-09-08T05:29:11,485 Fetching project page and analyzing links: https://www.piwheels.org/simple/rnaediting/
2025-09-08T05:29:11,486 Getting page https://www.piwheels.org/simple/rnaediting/
2025-09-08T05:29:11,487 Found index url https://www.piwheels.org/simple/
2025-09-08T05:29:11,591 Fetched page https://www.piwheels.org/simple/rnaediting/ as text/html
2025-09-08T05:29:11,593   Skipping link: No binaries permitted for rnaediting: https://archive1.piwheels.org/simple/rnaediting/rnaediting-0.0.7-py3-none-any.whl#sha256=8b3b192d1407e9d3e70b40ace1c52b8b91516500771de687c1b57c03b3aa6e69 (from https://www.piwheels.org/simple/rnaediting/)
2025-09-08T05:29:11,593   Skipping link: No binaries permitted for rnaediting: https://archive1.piwheels.org/simple/rnaediting/rnaediting-0.0.6-py3-none-any.whl#sha256=0d57e5ed1aa14f2669d5a9b772ff106a4e816cdaa24821a7defd0876b5c93859 (from https://www.piwheels.org/simple/rnaediting/)
2025-09-08T05:29:11,593   Skipping link: No binaries permitted for rnaediting: https://archive1.piwheels.org/simple/rnaediting/rnaediting-0.0.5-py3-none-any.whl#sha256=2f176ed3de3ca0df166335505695ab5914c89fce0d07545afd9930102b973a07 (from https://www.piwheels.org/simple/rnaediting/)
2025-09-08T05:29:11,593   Skipping link: No binaries permitted for rnaediting: https://archive1.piwheels.org/simple/rnaediting/rnaediting-0.0.4-py3-none-any.whl#sha256=21bb60c087222f12eb578b3f0859e8417e3f8381d57999637f33f578834bf86d (from https://www.piwheels.org/simple/rnaediting/)
2025-09-08T05:29:11,593 Skipping link: not a file: https://www.piwheels.org/simple/rnaediting/
2025-09-08T05:29:11,594 Skipping link: not a file: https://pypi.org/simple/rnaediting/
2025-09-08T05:29:11,620 Given no hashes to check 1 links for project 'rnaediting': discarding no candidates
2025-09-08T05:29:11,622 Collecting rnaediting==0.0.3
2025-09-08T05:29:11,624   Created temporary directory: /tmp/pip-unpack-6e7a3r81
2025-09-08T05:29:11,897   Downloading rnaediting-0.0.3.tar.gz (6.8 kB)
2025-09-08T05:29:11,914   Added rnaediting==0.0.3 from https://files.pythonhosted.org/packages/10/22/468c8f74338c4166021e5aa63294b8d6219111eb4886b15ec207de9ac789/rnaediting-0.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-n3z6hyf6'
2025-09-08T05:29:11,915   Running setup.py (path:/tmp/pip-wheel-qzzut6tv/rnaediting_ad5841f6fc914131b2861ceaf12fb7a0/setup.py) egg_info for package rnaediting
2025-09-08T05:29:11,915   Created temporary directory: /tmp/pip-pip-egg-info-wyttb8_j
2025-09-08T05:29:11,916   Preparing metadata (setup.py): started
2025-09-08T05:29:11,917   Running command python setup.py egg_info
2025-09-08T05:29:13,211   error in rnaediting setup command: 'install_requires' must be a string or iterable of strings containing valid project/version requirement specifiers; Expected end or semicolon (after version specifier)
2025-09-08T05:29:13,211       pandas>=0.17scipy>=0.16
2025-09-08T05:29:13,212             ~~~~~~^
2025-09-08T05:29:13,339   ERROR: python setup.py egg_info exited with 1
2025-09-08T05:29:13,353   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2025-09-08T05:29:13,353   exec(compile('"'"''"'"''"'"'
2025-09-08T05:29:13,353   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2025-09-08T05:29:13,353   #
2025-09-08T05:29:13,353   # - It imports setuptools before invoking setup.py, to enable projects that directly
2025-09-08T05:29:13,353   #   import from `distutils.core` to work with newer packaging standards.
2025-09-08T05:29:13,353   # - It provides a clear error message when setuptools is not installed.
2025-09-08T05:29:13,353   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2025-09-08T05:29:13,353   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2025-09-08T05:29:13,353   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2025-09-08T05:29:13,353   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2025-09-08T05:29:13,353   import os, sys, tokenize, traceback
2025-09-08T05:29:13,353   
2025-09-08T05:29:13,353   try:
2025-09-08T05:29:13,353       import setuptools
2025-09-08T05:29:13,353   except ImportError:
2025-09-08T05:29:13,353       print(
2025-09-08T05:29:13,353           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2025-09-08T05:29:13,353           "the build environment with exception:",
2025-09-08T05:29:13,353           file=sys.stderr,
2025-09-08T05:29:13,353       )
2025-09-08T05:29:13,353       traceback.print_exc()
2025-09-08T05:29:13,353       sys.exit(1)
2025-09-08T05:29:13,353   
2025-09-08T05:29:13,353   __file__ = %r
2025-09-08T05:29:13,353   sys.argv[0] = __file__
2025-09-08T05:29:13,353   
2025-09-08T05:29:13,353   if os.path.exists(__file__):
2025-09-08T05:29:13,353       filename = __file__
2025-09-08T05:29:13,353       with tokenize.open(__file__) as f:
2025-09-08T05:29:13,353           setup_py_code = f.read()
2025-09-08T05:29:13,353   else:
2025-09-08T05:29:13,353       filename = "<auto-generated setuptools caller>"
2025-09-08T05:29:13,353       setup_py_code = "from setuptools import setup; setup()"
2025-09-08T05:29:13,353   
2025-09-08T05:29:13,353   exec(compile(setup_py_code, filename, "exec"))
2025-09-08T05:29:13,353   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-qzzut6tv/rnaediting_ad5841f6fc914131b2861ceaf12fb7a0/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-wyttb8_j[/]
2025-09-08T05:29:13,354   [bold magenta]cwd[/]: /tmp/pip-wheel-qzzut6tv/rnaediting_ad5841f6fc914131b2861ceaf12fb7a0/
2025-09-08T05:29:13,354   Preparing metadata (setup.py): finished with status 'error'
2025-09-08T05:29:13,355 ERROR: metadata generation failed
2025-09-08T05:29:13,362 Exception information:
2025-09-08T05:29:13,362 Traceback (most recent call last):
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata
2025-09-08T05:29:13,362     call_subprocess(
2025-09-08T05:29:13,362     ~~~~~~~~~~~~~~~^
2025-09-08T05:29:13,362         args,
2025-09-08T05:29:13,362         ^^^^^
2025-09-08T05:29:13,362     ...<2 lines>...
2025-09-08T05:29:13,362         spinner=spinner,
2025-09-08T05:29:13,362         ^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362     )
2025-09-08T05:29:13,362     ^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess
2025-09-08T05:29:13,362     raise error
2025-09-08T05:29:13,362 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2025-09-08T05:29:13,362 
2025-09-08T05:29:13,362 The above exception was the direct cause of the following exception:
2025-09-08T05:29:13,362 
2025-09-08T05:29:13,362 Traceback (most recent call last):
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2025-09-08T05:29:13,362     status = _inner_run()
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2025-09-08T05:29:13,362     return self.run(options, args)
2025-09-08T05:29:13,362            ~~~~~~~~^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2025-09-08T05:29:13,362     return func(self, options, args)
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2025-09-08T05:29:13,362     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve
2025-09-08T05:29:13,362     result = self._result = resolver.resolve(
2025-09-08T05:29:13,362                             ~~~~~~~~~~~~~~~~^
2025-09-08T05:29:13,362         collected.requirements, max_rounds=limit_how_complex_resolution_can_be
2025-09-08T05:29:13,362         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362     )
2025-09-08T05:29:13,362     ^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve
2025-09-08T05:29:13,362     state = resolution.resolve(requirements, max_rounds=max_rounds)
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve
2025-09-08T05:29:13,362     self._add_to_criteria(self.state.criteria, r, parent=None)
2025-09-08T05:29:13,362     ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria
2025-09-08T05:29:13,362     if not criterion.candidates:
2025-09-08T05:29:13,362            ^^^^^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__
2025-09-08T05:29:13,362     return bool(self._sequence)
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__
2025-09-08T05:29:13,362     self._bool = any(self)
2025-09-08T05:29:13,362                  ~~~^^^^^^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in <genexpr>
2025-09-08T05:29:13,362     return (c for c in iterator if id(c) not in self._incompatible_ids)
2025-09-08T05:29:13,362                        ^^^^^^^^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built
2025-09-08T05:29:13,362     candidate = func()
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link
2025-09-08T05:29:13,362     base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
2025-09-08T05:29:13,362                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-08T05:29:13,362         link, template, name, version
2025-09-08T05:29:13,362         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362     )
2025-09-08T05:29:13,362     ^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link
2025-09-08T05:29:13,362     self._link_candidate_cache[link] = LinkCandidate(
2025-09-08T05:29:13,362                                        ~~~~~~~~~~~~~^
2025-09-08T05:29:13,362         link,
2025-09-08T05:29:13,362         ^^^^^
2025-09-08T05:29:13,362     ...<3 lines>...
2025-09-08T05:29:13,362         version=version,
2025-09-08T05:29:13,362         ^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362     )
2025-09-08T05:29:13,362     ^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__
2025-09-08T05:29:13,362     super().__init__(
2025-09-08T05:29:13,362     ~~~~~~~~~~~~~~~~^
2025-09-08T05:29:13,362         link=link,
2025-09-08T05:29:13,362         ^^^^^^^^^^
2025-09-08T05:29:13,362     ...<4 lines>...
2025-09-08T05:29:13,362         version=version,
2025-09-08T05:29:13,362         ^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362     )
2025-09-08T05:29:13,362     ^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__
2025-09-08T05:29:13,362     self.dist = self._prepare()
2025-09-08T05:29:13,362                 ~~~~~~~~~~~~~^^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare
2025-09-08T05:29:13,362     dist = self._prepare_distribution()
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution
2025-09-08T05:29:13,362     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2025-09-08T05:29:13,362            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement
2025-09-08T05:29:13,362     return self._prepare_linked_requirement(req, parallel_builds)
2025-09-08T05:29:13,362            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement
2025-09-08T05:29:13,362     dist = _get_prepared_distribution(
2025-09-08T05:29:13,362         req,
2025-09-08T05:29:13,362     ...<3 lines>...
2025-09-08T05:29:13,362         self.check_build_deps,
2025-09-08T05:29:13,362     )
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution
2025-09-08T05:29:13,362     abstract_dist.prepare_distribution_metadata(
2025-09-08T05:29:13,362     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-08T05:29:13,362         finder, build_isolation, check_build_deps
2025-09-08T05:29:13,362         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362     )
2025-09-08T05:29:13,362     ^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata
2025-09-08T05:29:13,362     self.req.prepare_metadata()
2025-09-08T05:29:13,362     ~~~~~~~~~~~~~~~~~~~~~~~~~^^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata
2025-09-08T05:29:13,362     self.metadata_directory = generate_metadata_legacy(
2025-09-08T05:29:13,362                               ~~~~~~~~~~~~~~~~~~~~~~~~^
2025-09-08T05:29:13,362         build_env=self.build_env,
2025-09-08T05:29:13,362         ^^^^^^^^^^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362     ...<3 lines>...
2025-09-08T05:29:13,362         details=details,
2025-09-08T05:29:13,362         ^^^^^^^^^^^^^^^^
2025-09-08T05:29:13,362     )
2025-09-08T05:29:13,362     ^
2025-09-08T05:29:13,362   File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata
2025-09-08T05:29:13,362     raise MetadataGenerationFailed(package_details=details) from error
2025-09-08T05:29:13,362 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2025-09-08T05:29:13,387 Removed rnaediting==0.0.3 from https://files.pythonhosted.org/packages/10/22/468c8f74338c4166021e5aa63294b8d6219111eb4886b15ec207de9ac789/rnaediting-0.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-n3z6hyf6'
2025-09-08T05:29:13,387 Removed build tracker: '/tmp/pip-build-tracker-n3z6hyf6'