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https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.10.0rc2-cp37-cp37m-linux_armv7l.whl#sha256=cb090c5366b7b76d938daa16ca5a431a4fe751344ec320479b3ba8134a6ff4bd (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,419 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.10.0rc2-cp39-cp39-linux_armv6l.whl#sha256=4b7226f511a99286314bd00f0ce2a1b66fb3458713efc1c18b24a423d3a9125b (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,419 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.10.0rc2-cp39-cp39-linux_armv7l.whl#sha256=4b7226f511a99286314bd00f0ce2a1b66fb3458713efc1c18b24a423d3a9125b (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,419 Skipping link: No binaries permitted for mdtraj: 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https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.10.0rc1-cp311-cp311-linux_armv7l.whl#sha256=1f13d3792f9062c44ac99e3a61bac7128f1d77d93ad42f3f9c61dfddc485a84b (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,420 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.10.0rc1-cp39-cp39-linux_armv6l.whl#sha256=961ec4359feef74c9b79bbcb1a2d5d0d2f59cb2683684d2c1e0b7b4e3f5c5ce7 (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,420 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.10.0rc1-cp39-cp39-linux_armv7l.whl#sha256=961ec4359feef74c9b79bbcb1a2d5d0d2f59cb2683684d2c1e0b7b4e3f5c5ce7 (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,420 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.9-cp37-cp37m-linux_armv6l.whl#sha256=45caac608640d5fdbd5a0dc7be3baa8a1c53ed2e1fcbca505c369265d39e81e5 (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,420 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.9-cp37-cp37m-linux_armv7l.whl#sha256=45caac608640d5fdbd5a0dc7be3baa8a1c53ed2e1fcbca505c369265d39e81e5 (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,420 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.9-cp39-cp39-linux_armv6l.whl#sha256=17beda35d5d81436d38431065a7f636ee87acf201220a1b7cadb44bdfef8e1ac (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,420 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.9-cp39-cp39-linux_armv7l.whl#sha256=17beda35d5d81436d38431065a7f636ee87acf201220a1b7cadb44bdfef8e1ac (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,420 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.9-cp311-cp311-linux_armv6l.whl#sha256=f34a54dd8a65075466e688fb90472889487b918f53dd300a13cb4a843ede142b (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,421 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.9-cp311-cp311-linux_armv7l.whl#sha256=f34a54dd8a65075466e688fb90472889487b918f53dd300a13cb4a843ede142b (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,421 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.8-cp37-cp37m-linux_armv6l.whl#sha256=5a6ef10c614114b37ec371fa3404f7d834f894d9576f3e3a4940d1587074f8e1 (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,421 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.8-cp37-cp37m-linux_armv7l.whl#sha256=5a6ef10c614114b37ec371fa3404f7d834f894d9576f3e3a4940d1587074f8e1 (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,421 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.8-cp39-cp39-linux_armv6l.whl#sha256=985dc85d46bda039eaa12656d7b3a95c340a2a298e8b580c0af8b9b7dca435c3 (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,421 Skipping link: No binaries permitted for mdtraj: https://archive1.piwheels.org/simple/mdtraj/mdtraj-1.9.8-cp39-cp39-linux_armv7l.whl#sha256=985dc85d46bda039eaa12656d7b3a95c340a2a298e8b580c0af8b9b7dca435c3 (from https://www.piwheels.org/simple/mdtraj/) 2025-09-08T06:11:40,421 Skipping link: not a file: https://www.piwheels.org/simple/mdtraj/ 2025-09-08T06:11:40,422 Skipping link: not a file: https://pypi.org/simple/mdtraj/ 2025-09-08T06:11:40,450 Given no hashes to check 2 links for project 'mdtraj': discarding no candidates 2025-09-08T06:11:40,452 Collecting mdtraj==1.8.0 2025-09-08T06:11:40,453 Created temporary directory: /tmp/pip-unpack-2qm9u8br 2025-09-08T06:11:40,595 Downloading mdtraj-1.8.0.zip (20.2 MB) 2025-09-08T06:11:43,954 Added mdtraj==1.8.0 from https://files.pythonhosted.org/packages/4a/2e/5bb01aaa8cd2ea9d75dd2ac12fd9f04f7137a8c996bde0138ad1b5e54ecb/mdtraj-1.8.0.zip to build tracker '/tmp/pip-build-tracker-ovjdhd6y' 2025-09-08T06:11:43,955 Running setup.py (path:/tmp/pip-wheel-dq0f0edi/mdtraj_c585017541ce467a9c73fee3af5de97d/setup.py) egg_info for package mdtraj 2025-09-08T06:11:43,955 Created temporary directory: /tmp/pip-pip-egg-info-xudko0c1 2025-09-08T06:11:43,956 Preparing metadata (setup.py): started 2025-09-08T06:11:43,956 Running command python setup.py egg_info 2025-09-08T06:11:45,126 Using built-in specs. 2025-09-08T06:11:45,126 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2025-09-08T06:11:45,127 COLLECT_LTO_WRAPPER=/usr/libexec/gcc/arm-linux-gnueabihf/14/lto-wrapper 2025-09-08T06:11:45,127 Target: arm-linux-gnueabihf 2025-09-08T06:11:45,127 Configured with: ../src/configure -v --with-pkgversion='Raspbian 14.2.0-19+rpi1' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6+fp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2025-09-08T06:11:45,127 Thread model: posix 2025-09-08T06:11:45,127 Supported LTO compression algorithms: zlib zstd 2025-09-08T06:11:45,128 gcc version 14.2.0 (Raspbian 14.2.0-19+rpi1) 2025-09-08T06:11:56,241 Error compiling Cython file: 2025-09-08T06:11:56,241 ------------------------------------------------------------ 2025-09-08T06:11:56,241 ... 2025-09-08T06:11:56,242 filesize = os.stat(self.filename).st_size 2025-09-08T06:11:56,242 byte_offset = XTC_SHORT_HEADER_SIZE + XTC_SHORT_BYTES_PER_ATOM*self.n_atoms 2025-09-08T06:11:56,242 assert filesize % byte_offset == 0, ("filesize(%i) not divideable" 2025-09-08T06:11:56,242 " by bytes per frames(%i)" 2025-09-08T06:11:56,242 % (filesize, byte_offset)) 2025-09-08T06:11:56,242 n_frames = filesize / byte_offset 2025-09-08T06:11:56,242 ^ 2025-09-08T06:11:56,242 ------------------------------------------------------------ 2025-09-08T06:11:56,242 mdtraj/formats/xtc/xtc.pyx:619:32: Cannot assign type 'double' to 'int64_t' (alias of 'long long') 2025-09-08T06:11:56,337 Traceback (most recent call last): 2025-09-08T06:11:56,339 File "", line 2, in 2025-09-08T06:11:56,340 exec(compile(''' 2025-09-08T06:11:56,340 ~~~~^^^^^^^^^^^^ 2025-09-08T06:11:56,340 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:11:56,340 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:56,340 ...<32 lines>... 2025-09-08T06:11:56,340 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:11:56,340 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:56,340 ''' % ('/tmp/pip-wheel-dq0f0edi/mdtraj_c585017541ce467a9c73fee3af5de97d/setup.py',), "", "exec")) 2025-09-08T06:11:56,341 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:56,341 File "", line 35, in 2025-09-08T06:11:56,341 File "/tmp/pip-wheel-dq0f0edi/mdtraj_c585017541ce467a9c73fee3af5de97d/setup.py", line 276, in 2025-09-08T06:11:56,341 ext_modules=cythonize(extensions), 2025-09-08T06:11:56,341 ~~~~~~~~~^^^^^^^^^^^^ 2025-09-08T06:11:56,341 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-08T06:11:56,341 cythonize_one(*args) 2025-09-08T06:11:56,341 ~~~~~~~~~~~~~^^^^^^^ 2025-09-08T06:11:56,341 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-08T06:11:56,342 raise CompileError(None, pyx_file) 2025-09-08T06:11:56,342 Cython.Compiler.Errors.CompileError: mdtraj/formats/xtc/xtc.pyx 2025-09-08T06:11:56,342 C compiler: 2025-09-08T06:11:56,342 Attempting to autodetect OpenMP support... Did not detect OpenMP support 2025-09-08T06:11:56,342 Attempting to autodetect SSE3 support... Did not detect SSE3 support 2025-09-08T06:11:56,342 Attempting to autodetect SSE4.1 support... Did not detect SSE4.1 support 2025-09-08T06:11:56,342 Compiling mdtraj/formats/xtc/xtc.pyx because it changed. 2025-09-08T06:11:56,343 Compiling mdtraj/formats/xtc/trr.pyx because it changed. 2025-09-08T06:11:56,343 Compiling mdtraj/formats/tng/tng.pyx because it changed. 2025-09-08T06:11:56,343 Compiling mdtraj/formats/dcd/dcd.pyx because it changed. 2025-09-08T06:11:56,343 Compiling mdtraj/formats/binpos/binpos.pyx because it changed. 2025-09-08T06:11:56,343 Compiling mdtraj/formats/dtr/dtr.pyx because it changed. 2025-09-08T06:11:56,343 Compiling mdtraj/rmsd/_rmsd.pyx because it changed. 2025-09-08T06:11:56,343 Compiling mdtraj/rmsd/_lprmsd.pyx because it changed. 2025-09-08T06:11:56,343 Compiling mdtraj/geometry/src/_geometry.pyx because it changed. 2025-09-08T06:11:56,343 Compiling mdtraj/geometry/drid.pyx because it changed. 2025-09-08T06:11:56,344 Compiling mdtraj/geometry/neighbors.pyx because it changed. 2025-09-08T06:11:56,344 Compiling mdtraj/geometry/neighborlist.pyx because it changed. 2025-09-08T06:11:56,344 [ 1/12] Cythonizing mdtraj/formats/binpos/binpos.pyx 2025-09-08T06:11:56,344 [ 2/12] Cythonizing mdtraj/formats/dcd/dcd.pyx 2025-09-08T06:11:56,344 [ 3/12] Cythonizing mdtraj/formats/dtr/dtr.pyx 2025-09-08T06:11:56,344 [ 4/12] Cythonizing mdtraj/formats/tng/tng.pyx 2025-09-08T06:11:56,344 [ 5/12] Cythonizing mdtraj/formats/xtc/trr.pyx 2025-09-08T06:11:56,344 [ 6/12] Cythonizing mdtraj/formats/xtc/xtc.pyx 2025-09-08T06:11:57,093 ERROR: python setup.py egg_info exited with 1 2025-09-08T06:11:57,104 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-08T06:11:57,104 exec(compile('"'"''"'"''"'"' 2025-09-08T06:11:57,104 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:11:57,104 # 2025-09-08T06:11:57,104 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:11:57,104 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:11:57,104 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:11:57,104 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:11:57,104 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:11:57,104 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:11:57,104 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:11:57,104 import os, sys, tokenize, traceback 2025-09-08T06:11:57,104 2025-09-08T06:11:57,104 try: 2025-09-08T06:11:57,104 import setuptools 2025-09-08T06:11:57,104 except ImportError: 2025-09-08T06:11:57,104 print( 2025-09-08T06:11:57,104 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:11:57,104 "the build environment with exception:", 2025-09-08T06:11:57,104 file=sys.stderr, 2025-09-08T06:11:57,104 ) 2025-09-08T06:11:57,104 traceback.print_exc() 2025-09-08T06:11:57,104 sys.exit(1) 2025-09-08T06:11:57,104 2025-09-08T06:11:57,104 __file__ = %r 2025-09-08T06:11:57,104 sys.argv[0] = __file__ 2025-09-08T06:11:57,104 2025-09-08T06:11:57,104 if os.path.exists(__file__): 2025-09-08T06:11:57,104 filename = __file__ 2025-09-08T06:11:57,104 with tokenize.open(__file__) as f: 2025-09-08T06:11:57,104 setup_py_code = f.read() 2025-09-08T06:11:57,104 else: 2025-09-08T06:11:57,104 filename = "" 2025-09-08T06:11:57,104 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:11:57,104 2025-09-08T06:11:57,104 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:11:57,104 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-dq0f0edi/mdtraj_c585017541ce467a9c73fee3af5de97d/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-xudko0c1[/] 2025-09-08T06:11:57,104 [bold magenta]cwd[/]: /tmp/pip-wheel-dq0f0edi/mdtraj_c585017541ce467a9c73fee3af5de97d/ 2025-09-08T06:11:57,105 Preparing metadata (setup.py): finished with status 'error' 2025-09-08T06:11:57,105 ERROR: metadata generation failed 2025-09-08T06:11:57,110 Exception information: 2025-09-08T06:11:57,110 Traceback (most recent call last): 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-08T06:11:57,110 call_subprocess( 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~^ 2025-09-08T06:11:57,110 args, 2025-09-08T06:11:57,110 ^^^^^ 2025-09-08T06:11:57,110 ...<2 lines>... 2025-09-08T06:11:57,110 spinner=spinner, 2025-09-08T06:11:57,110 ^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 ) 2025-09-08T06:11:57,110 ^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-08T06:11:57,110 raise error 2025-09-08T06:11:57,110 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-08T06:11:57,110 2025-09-08T06:11:57,110 The above exception was the direct cause of the following exception: 2025-09-08T06:11:57,110 2025-09-08T06:11:57,110 Traceback (most recent call last): 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:11:57,110 status = _inner_run() 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:11:57,110 return self.run(options, args) 2025-09-08T06:11:57,110 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:11:57,110 return func(self, options, args) 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-08T06:11:57,110 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-08T06:11:57,110 result = self._result = resolver.resolve( 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~~^ 2025-09-08T06:11:57,110 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-08T06:11:57,110 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 ) 2025-09-08T06:11:57,110 ^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-08T06:11:57,110 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-08T06:11:57,110 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-08T06:11:57,110 if not criterion.candidates: 2025-09-08T06:11:57,110 ^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-08T06:11:57,110 return bool(self._sequence) 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-08T06:11:57,110 self._bool = any(self) 2025-09-08T06:11:57,110 ~~~^^^^^^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-08T06:11:57,110 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-08T06:11:57,110 ^^^^^^^^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-08T06:11:57,110 candidate = func() 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-08T06:11:57,110 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T06:11:57,110 link, template, name, version 2025-09-08T06:11:57,110 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 ) 2025-09-08T06:11:57,110 ^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-08T06:11:57,110 self._link_candidate_cache[link] = LinkCandidate( 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~^ 2025-09-08T06:11:57,110 link, 2025-09-08T06:11:57,110 ^^^^^ 2025-09-08T06:11:57,110 ...<3 lines>... 2025-09-08T06:11:57,110 version=version, 2025-09-08T06:11:57,110 ^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 ) 2025-09-08T06:11:57,110 ^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-08T06:11:57,110 super().__init__( 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~~^ 2025-09-08T06:11:57,110 link=link, 2025-09-08T06:11:57,110 ^^^^^^^^^^ 2025-09-08T06:11:57,110 ...<4 lines>... 2025-09-08T06:11:57,110 version=version, 2025-09-08T06:11:57,110 ^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 ) 2025-09-08T06:11:57,110 ^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-08T06:11:57,110 self.dist = self._prepare() 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~^^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-08T06:11:57,110 dist = self._prepare_distribution() 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-08T06:11:57,110 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-08T06:11:57,110 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-08T06:11:57,110 dist = _get_prepared_distribution( 2025-09-08T06:11:57,110 req, 2025-09-08T06:11:57,110 ...<3 lines>... 2025-09-08T06:11:57,110 self.check_build_deps, 2025-09-08T06:11:57,110 ) 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-08T06:11:57,110 abstract_dist.prepare_distribution_metadata( 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T06:11:57,110 finder, build_isolation, check_build_deps 2025-09-08T06:11:57,110 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 ) 2025-09-08T06:11:57,110 ^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-08T06:11:57,110 self.req.prepare_metadata() 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-08T06:11:57,110 self.metadata_directory = generate_metadata_legacy( 2025-09-08T06:11:57,110 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-08T06:11:57,110 build_env=self.build_env, 2025-09-08T06:11:57,110 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 ...<3 lines>... 2025-09-08T06:11:57,110 details=details, 2025-09-08T06:11:57,110 ^^^^^^^^^^^^^^^^ 2025-09-08T06:11:57,110 ) 2025-09-08T06:11:57,110 ^ 2025-09-08T06:11:57,110 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-08T06:11:57,110 raise MetadataGenerationFailed(package_details=details) from error 2025-09-08T06:11:57,110 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-08T06:11:57,133 Removed mdtraj==1.8.0 from https://files.pythonhosted.org/packages/4a/2e/5bb01aaa8cd2ea9d75dd2ac12fd9f04f7137a8c996bde0138ad1b5e54ecb/mdtraj-1.8.0.zip from build tracker '/tmp/pip-build-tracker-ovjdhd6y' 2025-09-08T06:11:57,133 Removed build tracker: '/tmp/pip-build-tracker-ovjdhd6y'