2025-09-08T06:44:05,658 Created temporary directory: /tmp/pip-build-tracker-xvgguonj 2025-09-08T06:44:05,658 Initialized build tracking at /tmp/pip-build-tracker-xvgguonj 2025-09-08T06:44:05,659 Created build tracker: /tmp/pip-build-tracker-xvgguonj 2025-09-08T06:44:05,659 Entered build tracker: /tmp/pip-build-tracker-xvgguonj 2025-09-08T06:44:05,659 Created temporary directory: /tmp/pip-wheel-csnhwqob 2025-09-08T06:44:05,662 Created temporary directory: /tmp/pip-ephem-wheel-cache-sab1mt49 2025-09-08T06:44:05,719 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T06:44:05,722 2 location(s) to search for versions of limix-inference: 2025-09-08T06:44:05,722 * https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:05,722 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:05,722 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:05,722 Getting page 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https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T06:44:05,807 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:05,807 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:05,808 Found index url https://www.piwheels.org/simple/ 2025-09-08T06:44:05,891 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T06:44:05,894 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:05,894 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:05,895 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:05,895 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:05,895 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:05,895 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:05,895 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:05,896 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:05,896 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:05,896 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:05,896 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:05,924 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T06:44:05,926 Collecting limix-inference==1.0.2rc0 2025-09-08T06:44:05,927 Created temporary directory: /tmp/pip-unpack-cihnqrty 2025-09-08T06:44:06,075 Downloading limix-inference-1.0.2rc0.tar.gz (26 kB) 2025-09-08T06:44:06,132 Added limix-inference==1.0.2rc0 from https://files.pythonhosted.org/packages/73/24/13172b0c6b09c5eaa607e8157d48b24fa4c6635d3c39e6eccf574a596077/limix-inference-1.0.2rc0.tar.gz to build tracker '/tmp/pip-build-tracker-xvgguonj' 2025-09-08T06:44:06,133 Running setup.py (path:/tmp/pip-wheel-csnhwqob/limix-inference_2537f58ab29d45fe9c8ced57111efbca/setup.py) egg_info for package limix-inference 2025-09-08T06:44:06,134 Created temporary directory: /tmp/pip-pip-egg-info-y8j870xw 2025-09-08T06:44:06,134 Preparing metadata (setup.py): started 2025-09-08T06:44:06,135 Running command python setup.py egg_info 2025-09-08T06:44:07,145 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:07,145 !! 2025-09-08T06:44:07,145 ******************************************************************************** 2025-09-08T06:44:07,145 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:07,145 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:07,146 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:07,146 or your builds will no longer be supported. 2025-09-08T06:44:07,146 ******************************************************************************** 2025-09-08T06:44:07,146 !! 2025-09-08T06:44:07,146 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:07,301 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:07,301 warnings.warn(msg) 2025-09-08T06:44:07,782 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:07,782 !! 2025-09-08T06:44:07,782 ******************************************************************************** 2025-09-08T06:44:07,782 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:07,782 License :: OSI Approved :: MIT License 2025-09-08T06:44:07,782 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:07,783 ******************************************************************************** 2025-09-08T06:44:07,783 !! 2025-09-08T06:44:07,783 self._finalize_license_expression() 2025-09-08T06:44:07,855 running egg_info 2025-09-08T06:44:07,930 creating /tmp/pip-pip-egg-info-y8j870xw/limix_inference.egg-info 2025-09-08T06:44:07,930 writing /tmp/pip-pip-egg-info-y8j870xw/limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:07,931 writing dependency_links to /tmp/pip-pip-egg-info-y8j870xw/limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:07,932 writing requirements to /tmp/pip-pip-egg-info-y8j870xw/limix_inference.egg-info/requires.txt 2025-09-08T06:44:07,932 writing top-level names to /tmp/pip-pip-egg-info-y8j870xw/limix_inference.egg-info/top_level.txt 2025-09-08T06:44:07,933 writing manifest file '/tmp/pip-pip-egg-info-y8j870xw/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:08,160 reading manifest file '/tmp/pip-pip-egg-info-y8j870xw/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:08,161 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:08,165 adding license file 'LICENSE' 2025-09-08T06:44:08,169 writing manifest file '/tmp/pip-pip-egg-info-y8j870xw/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:08,296 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T06:44:08,300 Source in /tmp/pip-wheel-csnhwqob/limix-inference_2537f58ab29d45fe9c8ced57111efbca has version 1.0.2rc0, which satisfies requirement limix-inference==1.0.2rc0 from https://files.pythonhosted.org/packages/73/24/13172b0c6b09c5eaa607e8157d48b24fa4c6635d3c39e6eccf574a596077/limix-inference-1.0.2rc0.tar.gz 2025-09-08T06:44:08,301 Removed limix-inference==1.0.2rc0 from https://files.pythonhosted.org/packages/73/24/13172b0c6b09c5eaa607e8157d48b24fa4c6635d3c39e6eccf574a596077/limix-inference-1.0.2rc0.tar.gz from build tracker '/tmp/pip-build-tracker-xvgguonj' 2025-09-08T06:44:08,306 Created temporary directory: /tmp/pip-unpack-jj73_7ve 2025-09-08T06:44:08,306 Created temporary directory: /tmp/pip-unpack-za_v_s2s 2025-09-08T06:44:08,307 Building wheels for collected packages: limix-inference 2025-09-08T06:44:08,308 Created temporary directory: /tmp/pip-wheel-h3zncd7m 2025-09-08T06:44:08,309 DEPRECATION: Building 'limix-inference' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'limix-inference'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T06:44:08,310 Building wheel for limix-inference (setup.py): started 2025-09-08T06:44:08,310 Destination directory: /tmp/pip-wheel-h3zncd7m 2025-09-08T06:44:08,311 Running command python setup.py bdist_wheel 2025-09-08T06:44:09,298 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:09,298 !! 2025-09-08T06:44:09,298 ******************************************************************************** 2025-09-08T06:44:09,298 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:09,298 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:09,298 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:09,298 or your builds will no longer be supported. 2025-09-08T06:44:09,299 ******************************************************************************** 2025-09-08T06:44:09,299 !! 2025-09-08T06:44:09,299 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:09,448 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:09,448 warnings.warn(msg) 2025-09-08T06:44:09,932 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:09,932 !! 2025-09-08T06:44:09,932 ******************************************************************************** 2025-09-08T06:44:09,932 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:09,932 License :: OSI Approved :: MIT License 2025-09-08T06:44:09,932 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:09,933 ******************************************************************************** 2025-09-08T06:44:09,933 !! 2025-09-08T06:44:09,933 self._finalize_license_expression() 2025-09-08T06:44:09,935 running bdist_wheel 2025-09-08T06:44:10,228 running build 2025-09-08T06:44:10,228 running build_py 2025-09-08T06:44:10,305 creating build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:10,306 copying limix_inference/fruits.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:10,307 copying limix_inference/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:10,308 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:10,308 copying limix_inference/mean/_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:10,309 copying limix_inference/mean/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:10,310 copying limix_inference/mean/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:10,311 copying limix_inference/mean/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:10,312 creating build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:10,312 copying limix_inference/lik/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:10,313 copying limix_inference/lik/_prod.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:10,314 copying limix_inference/lik/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:10,315 creating build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm 2025-09-08T06:44:10,315 copying limix_inference/_fastlmm/_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm 2025-09-08T06:44:10,316 copying limix_inference/_fastlmm/_core.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm 2025-09-08T06:44:10,316 copying limix_inference/_fastlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm 2025-09-08T06:44:10,318 creating build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:10,318 copying limix_inference/_ep/_fixed.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:10,319 copying limix_inference/_ep/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:10,320 copying limix_inference/_ep/_ep.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:10,320 copying limix_inference/_ep/_conditioning.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:10,321 copying limix_inference/_ep/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:10,322 creating build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:10,323 copying limix_inference/liknorm/_machine.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:10,323 copying limix_inference/liknorm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:10,324 copying limix_inference/liknorm/_build.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:10,325 creating build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm 2025-09-08T06:44:10,325 copying limix_inference/_slowlmm/_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm 2025-09-08T06:44:10,326 copying limix_inference/_slowlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm 2025-09-08T06:44:10,327 creating build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:10,327 copying limix_inference/random/_glmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:10,328 copying limix_inference/random/_canonical.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:10,329 copying limix_inference/random/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:10,330 creating build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:10,330 copying limix_inference/link/_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:10,331 copying limix_inference/link/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:10,332 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:10,332 copying limix_inference/cov/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:10,333 copying limix_inference/cov/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:10,334 copying limix_inference/cov/_eye.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:10,335 copying limix_inference/cov/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:10,335 running egg_info 2025-09-08T06:44:10,416 writing limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:10,418 writing dependency_links to limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:10,419 writing requirements to limix_inference.egg-info/requires.txt 2025-09-08T06:44:10,419 writing top-level names to limix_inference.egg-info/top_level.txt 2025-09-08T06:44:10,499 reading manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:10,503 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:10,508 adding license file 'LICENSE' 2025-09-08T06:44:10,513 writing manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:10,514 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference._ep.liknorm' is absent from the `packages` configuration. 2025-09-08T06:44:10,514 !! 2025-09-08T06:44:10,515 ******************************************************************************** 2025-09-08T06:44:10,515 ############################ 2025-09-08T06:44:10,515 # Package would be ignored # 2025-09-08T06:44:10,515 ############################ 2025-09-08T06:44:10,515 Python recognizes 'limix_inference._ep.liknorm' as an importable package[^1], 2025-09-08T06:44:10,515 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:10,515 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:10,515 package, please make sure that 'limix_inference._ep.liknorm' is explicitly added 2025-09-08T06:44:10,515 to the `packages` configuration field. 2025-09-08T06:44:10,516 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:10,516 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:10,516 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:10,516 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:10,516 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:10,516 If you don't want 'limix_inference._ep.liknorm' to be distributed and are 2025-09-08T06:44:10,516 already explicitly excluding 'limix_inference._ep.liknorm' via 2025-09-08T06:44:10,516 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:10,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:10,517 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:10,517 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:10,517 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:10,517 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:10,517 even if it does not contain any `.py` files. 2025-09-08T06:44:10,518 On the other hand, currently there is no concept of package data 2025-09-08T06:44:10,518 directory, all directories are treated like packages. 2025-09-08T06:44:10,518 ******************************************************************************** 2025-09-08T06:44:10,518 !! 2025-09-08T06:44:10,518 check.warn(importable) 2025-09-08T06:44:10,518 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference._ep.test' is absent from the `packages` configuration. 2025-09-08T06:44:10,518 !! 2025-09-08T06:44:10,518 ******************************************************************************** 2025-09-08T06:44:10,519 ############################ 2025-09-08T06:44:10,519 # Package would be ignored # 2025-09-08T06:44:10,519 ############################ 2025-09-08T06:44:10,519 Python recognizes 'limix_inference._ep.test' as an importable package[^1], 2025-09-08T06:44:10,519 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:10,519 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:10,519 package, please make sure that 'limix_inference._ep.test' is explicitly added 2025-09-08T06:44:10,519 to the `packages` configuration field. 2025-09-08T06:44:10,519 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:10,519 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:10,520 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:10,520 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:10,520 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:10,520 If you don't want 'limix_inference._ep.test' to be distributed and are 2025-09-08T06:44:10,520 already explicitly excluding 'limix_inference._ep.test' via 2025-09-08T06:44:10,520 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:10,520 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:10,520 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:10,521 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:10,521 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:10,521 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:10,521 even if it does not contain any `.py` files. 2025-09-08T06:44:10,521 On the other hand, currently there is no concept of package data 2025-09-08T06:44:10,521 directory, all directories are treated like packages. 2025-09-08T06:44:10,521 ******************************************************************************** 2025-09-08T06:44:10,522 !! 2025-09-08T06:44:10,522 check.warn(importable) 2025-09-08T06:44:10,522 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference._fastlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:10,522 !! 2025-09-08T06:44:10,522 ******************************************************************************** 2025-09-08T06:44:10,522 ############################ 2025-09-08T06:44:10,522 # Package would be ignored # 2025-09-08T06:44:10,522 ############################ 2025-09-08T06:44:10,522 Python recognizes 'limix_inference._fastlmm.test' as an importable package[^1], 2025-09-08T06:44:10,523 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:10,523 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:10,523 package, please make sure that 'limix_inference._fastlmm.test' is explicitly added 2025-09-08T06:44:10,523 to the `packages` configuration field. 2025-09-08T06:44:10,523 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:10,523 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:10,523 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:10,523 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:10,524 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:10,524 If you don't want 'limix_inference._fastlmm.test' to be distributed and are 2025-09-08T06:44:10,524 already explicitly excluding 'limix_inference._fastlmm.test' via 2025-09-08T06:44:10,524 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:10,524 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:10,524 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:10,524 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:10,524 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:10,525 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:10,525 even if it does not contain any `.py` files. 2025-09-08T06:44:10,525 On the other hand, currently there is no concept of package data 2025-09-08T06:44:10,525 directory, all directories are treated like packages. 2025-09-08T06:44:10,525 ******************************************************************************** 2025-09-08T06:44:10,525 !! 2025-09-08T06:44:10,525 check.warn(importable) 2025-09-08T06:44:10,525 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference._slowlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:10,526 !! 2025-09-08T06:44:10,526 ******************************************************************************** 2025-09-08T06:44:10,526 ############################ 2025-09-08T06:44:10,526 # Package would be ignored # 2025-09-08T06:44:10,526 ############################ 2025-09-08T06:44:10,526 Python recognizes 'limix_inference._slowlmm.test' as an importable package[^1], 2025-09-08T06:44:10,526 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:10,526 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:10,526 package, please make sure that 'limix_inference._slowlmm.test' is explicitly added 2025-09-08T06:44:10,527 to the `packages` configuration field. 2025-09-08T06:44:10,527 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:10,527 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:10,527 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:10,527 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:10,527 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:10,528 If you don't want 'limix_inference._slowlmm.test' to be distributed and are 2025-09-08T06:44:10,528 already explicitly excluding 'limix_inference._slowlmm.test' via 2025-09-08T06:44:10,528 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:10,528 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:10,528 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:10,528 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:10,528 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:10,528 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:10,529 even if it does not contain any `.py` files. 2025-09-08T06:44:10,529 On the other hand, currently there is no concept of package data 2025-09-08T06:44:10,529 directory, all directories are treated like packages. 2025-09-08T06:44:10,529 ******************************************************************************** 2025-09-08T06:44:10,529 !! 2025-09-08T06:44:10,529 check.warn(importable) 2025-09-08T06:44:10,529 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.cov.test' is absent from the `packages` configuration. 2025-09-08T06:44:10,529 !! 2025-09-08T06:44:10,530 ******************************************************************************** 2025-09-08T06:44:10,530 ############################ 2025-09-08T06:44:10,530 # Package would be ignored # 2025-09-08T06:44:10,530 ############################ 2025-09-08T06:44:10,530 Python recognizes 'limix_inference.cov.test' as an importable package[^1], 2025-09-08T06:44:10,530 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:10,530 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:10,530 package, please make sure that 'limix_inference.cov.test' is explicitly added 2025-09-08T06:44:10,530 to the `packages` configuration field. 2025-09-08T06:44:10,531 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:10,531 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:10,531 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:10,531 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:10,531 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:10,531 If you don't want 'limix_inference.cov.test' to be distributed and are 2025-09-08T06:44:10,531 already explicitly excluding 'limix_inference.cov.test' via 2025-09-08T06:44:10,531 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:10,532 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:10,532 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:10,532 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:10,532 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:10,532 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:10,532 even if it does not contain any `.py` files. 2025-09-08T06:44:10,532 On the other hand, currently there is no concept of package data 2025-09-08T06:44:10,532 directory, all directories are treated like packages. 2025-09-08T06:44:10,533 ******************************************************************************** 2025-09-08T06:44:10,533 !! 2025-09-08T06:44:10,533 check.warn(importable) 2025-09-08T06:44:10,533 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.link.test' is absent from the `packages` configuration. 2025-09-08T06:44:10,533 !! 2025-09-08T06:44:10,533 ******************************************************************************** 2025-09-08T06:44:10,533 ############################ 2025-09-08T06:44:10,533 # Package would be ignored # 2025-09-08T06:44:10,533 ############################ 2025-09-08T06:44:10,534 Python recognizes 'limix_inference.link.test' as an importable package[^1], 2025-09-08T06:44:10,534 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:10,534 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:10,534 package, please make sure that 'limix_inference.link.test' is explicitly added 2025-09-08T06:44:10,534 to the `packages` configuration field. 2025-09-08T06:44:10,534 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:10,534 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:10,534 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:10,534 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:10,535 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:10,535 If you don't want 'limix_inference.link.test' to be distributed and are 2025-09-08T06:44:10,535 already explicitly excluding 'limix_inference.link.test' via 2025-09-08T06:44:10,535 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:10,535 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:10,535 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:10,535 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:10,535 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:10,536 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:10,536 even if it does not contain any `.py` files. 2025-09-08T06:44:10,536 On the other hand, currently there is no concept of package data 2025-09-08T06:44:10,536 directory, all directories are treated like packages. 2025-09-08T06:44:10,536 ******************************************************************************** 2025-09-08T06:44:10,536 !! 2025-09-08T06:44:10,536 check.warn(importable) 2025-09-08T06:44:10,536 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.mean.test' is absent from the `packages` configuration. 2025-09-08T06:44:10,536 !! 2025-09-08T06:44:10,537 ******************************************************************************** 2025-09-08T06:44:10,537 ############################ 2025-09-08T06:44:10,537 # Package would be ignored # 2025-09-08T06:44:10,537 ############################ 2025-09-08T06:44:10,537 Python recognizes 'limix_inference.mean.test' as an importable package[^1], 2025-09-08T06:44:10,537 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:10,538 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:10,538 package, please make sure that 'limix_inference.mean.test' is explicitly added 2025-09-08T06:44:10,538 to the `packages` configuration field. 2025-09-08T06:44:10,538 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:10,538 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:10,538 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:10,538 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:10,538 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:10,539 If you don't want 'limix_inference.mean.test' to be distributed and are 2025-09-08T06:44:10,539 already explicitly excluding 'limix_inference.mean.test' via 2025-09-08T06:44:10,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:10,539 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:10,539 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:10,539 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:10,539 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:10,540 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:10,540 even if it does not contain any `.py` files. 2025-09-08T06:44:10,540 On the other hand, currently there is no concept of package data 2025-09-08T06:44:10,540 directory, all directories are treated like packages. 2025-09-08T06:44:10,540 ******************************************************************************** 2025-09-08T06:44:10,540 !! 2025-09-08T06:44:10,540 check.warn(importable) 2025-09-08T06:44:10,540 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.random.test' is absent from the `packages` configuration. 2025-09-08T06:44:10,540 !! 2025-09-08T06:44:10,541 ******************************************************************************** 2025-09-08T06:44:10,541 ############################ 2025-09-08T06:44:10,541 # Package would be ignored # 2025-09-08T06:44:10,541 ############################ 2025-09-08T06:44:10,541 Python recognizes 'limix_inference.random.test' as an importable package[^1], 2025-09-08T06:44:10,541 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:10,541 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:10,541 package, please make sure that 'limix_inference.random.test' is explicitly added 2025-09-08T06:44:10,541 to the `packages` configuration field. 2025-09-08T06:44:10,542 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:10,542 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:10,542 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:10,542 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:10,542 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:10,542 If you don't want 'limix_inference.random.test' to be distributed and are 2025-09-08T06:44:10,542 already explicitly excluding 'limix_inference.random.test' via 2025-09-08T06:44:10,542 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:10,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:10,543 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:10,543 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:10,543 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:10,543 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:10,543 even if it does not contain any `.py` files. 2025-09-08T06:44:10,543 On the other hand, currently there is no concept of package data 2025-09-08T06:44:10,544 directory, all directories are treated like packages. 2025-09-08T06:44:10,544 ******************************************************************************** 2025-09-08T06:44:10,544 !! 2025-09-08T06:44:10,544 check.warn(importable) 2025-09-08T06:44:10,544 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.test' is absent from the `packages` configuration. 2025-09-08T06:44:10,544 !! 2025-09-08T06:44:10,544 ******************************************************************************** 2025-09-08T06:44:10,544 ############################ 2025-09-08T06:44:10,545 # Package would be ignored # 2025-09-08T06:44:10,545 ############################ 2025-09-08T06:44:10,545 Python recognizes 'limix_inference.test' as an importable package[^1], 2025-09-08T06:44:10,545 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:10,545 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:10,545 package, please make sure that 'limix_inference.test' is explicitly added 2025-09-08T06:44:10,545 to the `packages` configuration field. 2025-09-08T06:44:10,545 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:10,545 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:10,546 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:10,546 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:10,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:10,546 If you don't want 'limix_inference.test' to be distributed and are 2025-09-08T06:44:10,546 already explicitly excluding 'limix_inference.test' via 2025-09-08T06:44:10,546 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:10,546 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:10,546 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:10,547 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:10,547 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:10,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:10,547 even if it does not contain any `.py` files. 2025-09-08T06:44:10,547 On the other hand, currently there is no concept of package data 2025-09-08T06:44:10,547 directory, all directories are treated like packages. 2025-09-08T06:44:10,547 ******************************************************************************** 2025-09-08T06:44:10,548 !! 2025-09-08T06:44:10,548 check.warn(importable) 2025-09-08T06:44:10,548 creating build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:10,548 copying limix_inference/test/test_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:10,548 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:10,548 copying limix_inference/mean/test/test_linear_mean.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:10,548 copying limix_inference/mean/test/test_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:10,548 creating build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm/test 2025-09-08T06:44:10,548 copying limix_inference/_fastlmm/test/test_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm/test 2025-09-08T06:44:10,548 creating build/lib.linux-armv7l-cpython-313/limix_inference/_ep/liknorm 2025-09-08T06:44:10,549 copying limix_inference/_ep/liknorm/_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep/liknorm 2025-09-08T06:44:10,549 creating build/lib.linux-armv7l-cpython-313/limix_inference/_ep/test 2025-09-08T06:44:10,549 copying limix_inference/_ep/test/test_bernoulli.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep/test 2025-09-08T06:44:10,549 copying limix_inference/_ep/test/test_binomial.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep/test 2025-09-08T06:44:10,549 copying limix_inference/_ep/test/test_poisson.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep/test 2025-09-08T06:44:10,549 creating build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm/test 2025-09-08T06:44:10,549 copying limix_inference/_slowlmm/test/test_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm/test 2025-09-08T06:44:10,549 creating build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:10,549 copying limix_inference/random/test/test_sampling.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:10,549 creating build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:10,549 copying limix_inference/link/test/test_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:10,550 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:10,550 copying limix_inference/cov/test/test_eye_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:10,550 copying limix_inference/cov/test/test_linear_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:10,550 copying limix_inference/cov/test/test_sum_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:10,550 running build_ext 2025-09-08T06:44:10,550 generating cffi module 'build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c' 2025-09-08T06:44:10,550 creating build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:10,873 building 'limix_inference.liknorm._ffi' extension 2025-09-08T06:44:10,874 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:10,874 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.o 2025-09-08T06:44:11,151 build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c:574:14: fatal error: liknorm/liknorm.h: No such file or directory 2025-09-08T06:44:11,151 574 | #include "liknorm/liknorm.h" 2025-09-08T06:44:11,151 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T06:44:11,151 compilation terminated. 2025-09-08T06:44:11,154 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T06:44:11,318 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T06:44:11,331 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T06:44:11,331 exec(compile('"'"''"'"''"'"' 2025-09-08T06:44:11,331 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:44:11,331 # 2025-09-08T06:44:11,331 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:44:11,331 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:44:11,331 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:44:11,331 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:44:11,331 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:44:11,331 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:44:11,331 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:44:11,331 import os, sys, tokenize, traceback 2025-09-08T06:44:11,331 2025-09-08T06:44:11,331 try: 2025-09-08T06:44:11,331 import setuptools 2025-09-08T06:44:11,331 except ImportError: 2025-09-08T06:44:11,331 print( 2025-09-08T06:44:11,331 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:44:11,331 "the build environment with exception:", 2025-09-08T06:44:11,331 file=sys.stderr, 2025-09-08T06:44:11,331 ) 2025-09-08T06:44:11,331 traceback.print_exc() 2025-09-08T06:44:11,331 sys.exit(1) 2025-09-08T06:44:11,331 2025-09-08T06:44:11,331 __file__ = %r 2025-09-08T06:44:11,331 sys.argv[0] = __file__ 2025-09-08T06:44:11,331 2025-09-08T06:44:11,331 if os.path.exists(__file__): 2025-09-08T06:44:11,331 filename = __file__ 2025-09-08T06:44:11,331 with tokenize.open(__file__) as f: 2025-09-08T06:44:11,331 setup_py_code = f.read() 2025-09-08T06:44:11,331 else: 2025-09-08T06:44:11,331 filename = "" 2025-09-08T06:44:11,331 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:44:11,331 2025-09-08T06:44:11,331 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:44:11,331 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-csnhwqob/limix-inference_2537f58ab29d45fe9c8ced57111efbca/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-h3zncd7m[/] 2025-09-08T06:44:11,331 [bold magenta]cwd[/]: /tmp/pip-wheel-csnhwqob/limix-inference_2537f58ab29d45fe9c8ced57111efbca/ 2025-09-08T06:44:11,331 Building wheel for limix-inference (setup.py): finished with status 'error' 2025-09-08T06:44:11,332 ERROR: Failed building wheel for limix-inference 2025-09-08T06:44:11,333 Running setup.py clean for limix-inference 2025-09-08T06:44:11,334 Running command python setup.py clean 2025-09-08T06:44:12,353 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:12,354 !! 2025-09-08T06:44:12,354 ******************************************************************************** 2025-09-08T06:44:12,354 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:12,354 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:12,354 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:12,354 or your builds will no longer be supported. 2025-09-08T06:44:12,354 ******************************************************************************** 2025-09-08T06:44:12,355 !! 2025-09-08T06:44:12,355 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:12,509 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:12,509 warnings.warn(msg) 2025-09-08T06:44:12,997 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:12,997 !! 2025-09-08T06:44:12,998 ******************************************************************************** 2025-09-08T06:44:12,998 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:12,998 License :: OSI Approved :: MIT License 2025-09-08T06:44:12,998 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:12,998 ******************************************************************************** 2025-09-08T06:44:12,998 !! 2025-09-08T06:44:12,998 self._finalize_license_expression() 2025-09-08T06:44:13,075 running clean 2025-09-08T06:44:13,225 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:13,226 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:13,228 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T06:44:13,228 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T06:44:13,229 removing 'build' 2025-09-08T06:44:13,354 Failed to build limix-inference 2025-09-08T06:44:13,355 ERROR: Failed to build one or more wheels 2025-09-08T06:44:13,355 Exception information: 2025-09-08T06:44:13,355 Traceback (most recent call last): 2025-09-08T06:44:13,355 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:44:13,355 status = _inner_run() 2025-09-08T06:44:13,355 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:44:13,355 return self.run(options, args) 2025-09-08T06:44:13,355 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:44:13,355 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:44:13,355 return func(self, options, args) 2025-09-08T06:44:13,355 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T06:44:13,355 raise CommandError("Failed to build one or more wheels") 2025-09-08T06:44:13,355 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T06:44:13,360 Removed build tracker: '/tmp/pip-build-tracker-xvgguonj'