2025-09-08T06:44:08,988 Created temporary directory: /tmp/pip-build-tracker-fhh6dpj8 2025-09-08T06:44:08,989 Initialized build tracking at /tmp/pip-build-tracker-fhh6dpj8 2025-09-08T06:44:08,989 Created build tracker: /tmp/pip-build-tracker-fhh6dpj8 2025-09-08T06:44:08,989 Entered build tracker: /tmp/pip-build-tracker-fhh6dpj8 2025-09-08T06:44:08,989 Created temporary directory: /tmp/pip-wheel-27hstj5f 2025-09-08T06:44:08,993 Created temporary directory: /tmp/pip-ephem-wheel-cache-gmryt3x3 2025-09-08T06:44:09,051 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T06:44:09,053 2 location(s) to search for versions of limix-inference: 2025-09-08T06:44:09,053 * https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:09,053 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:09,054 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:09,054 Getting page 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https://files.pythonhosted.org/packages/b8/e8/c54d52bdcd945b9a4c71fbbcf03797d190000ce37126c9f9ae3d46619dcf/limix-inference-1.1.2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.2 2025-09-08T06:44:09,137 Found link https://files.pythonhosted.org/packages/7e/09/2c88d1b16d0cde089f51eb54790c7ce0cdf5afc57592b7b55e8222203ce0/limix-inference-1.1.3.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.3 2025-09-08T06:44:09,138 Found link https://files.pythonhosted.org/packages/cf/21/4f4f8caaf4ebef6d5948528c8a0dcf5863ab819faf97123797c57fe2c675/limix-inference-1.1.4.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.4 2025-09-08T06:44:09,138 Found link https://files.pythonhosted.org/packages/e8/cd/0dddf22fb999f514e9d2f6a4a95a5ebe4fbf677fae4c3136d14d258ce1c8/limix-inference-1.1.5.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.5 2025-09-08T06:44:09,138 Found link https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T06:44:09,138 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:09,139 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:09,140 Found index url https://www.piwheels.org/simple/ 2025-09-08T06:44:09,243 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T06:44:09,245 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:09,245 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:09,245 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:09,246 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:09,246 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:09,246 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:09,246 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:09,246 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:09,246 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:09,246 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:09,247 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:09,276 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T06:44:09,277 Collecting limix-inference==1.0.2rc2 2025-09-08T06:44:09,279 Created temporary directory: /tmp/pip-unpack-0dr_rcda 2025-09-08T06:44:09,416 Downloading limix-inference-1.0.2rc2.tar.gz (26 kB) 2025-09-08T06:44:09,473 Added limix-inference==1.0.2rc2 from https://files.pythonhosted.org/packages/05/36/dc8947547cb84436e86e1c7845eb0c232e3da227055f2d6d614b8d8a6f28/limix-inference-1.0.2rc2.tar.gz to build tracker '/tmp/pip-build-tracker-fhh6dpj8' 2025-09-08T06:44:09,474 Running setup.py (path:/tmp/pip-wheel-27hstj5f/limix-inference_99301ffea0b94108ac2a92b0bbc88d4e/setup.py) egg_info for package limix-inference 2025-09-08T06:44:09,474 Created temporary directory: /tmp/pip-pip-egg-info-5tjha57k 2025-09-08T06:44:09,474 Preparing metadata (setup.py): started 2025-09-08T06:44:09,475 Running command python setup.py egg_info 2025-09-08T06:44:10,470 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:10,470 !! 2025-09-08T06:44:10,470 ******************************************************************************** 2025-09-08T06:44:10,471 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:10,471 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:10,471 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:10,471 or your builds will no longer be supported. 2025-09-08T06:44:10,471 ******************************************************************************** 2025-09-08T06:44:10,471 !! 2025-09-08T06:44:10,471 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:10,679 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:10,679 warnings.warn(msg) 2025-09-08T06:44:11,165 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:11,165 !! 2025-09-08T06:44:11,166 ******************************************************************************** 2025-09-08T06:44:11,166 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:11,166 License :: OSI Approved :: MIT License 2025-09-08T06:44:11,166 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:11,166 ******************************************************************************** 2025-09-08T06:44:11,166 !! 2025-09-08T06:44:11,166 self._finalize_license_expression() 2025-09-08T06:44:11,240 running egg_info 2025-09-08T06:44:11,314 creating /tmp/pip-pip-egg-info-5tjha57k/limix_inference.egg-info 2025-09-08T06:44:11,315 writing /tmp/pip-pip-egg-info-5tjha57k/limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:11,316 writing dependency_links to /tmp/pip-pip-egg-info-5tjha57k/limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:11,317 writing requirements to /tmp/pip-pip-egg-info-5tjha57k/limix_inference.egg-info/requires.txt 2025-09-08T06:44:11,317 writing top-level names to /tmp/pip-pip-egg-info-5tjha57k/limix_inference.egg-info/top_level.txt 2025-09-08T06:44:11,317 writing manifest file '/tmp/pip-pip-egg-info-5tjha57k/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:11,544 reading manifest file '/tmp/pip-pip-egg-info-5tjha57k/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:11,545 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:11,550 adding license file 'LICENSE' 2025-09-08T06:44:11,554 writing manifest file '/tmp/pip-pip-egg-info-5tjha57k/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:11,680 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T06:44:11,685 Source in /tmp/pip-wheel-27hstj5f/limix-inference_99301ffea0b94108ac2a92b0bbc88d4e has version 1.0.2rc2, which satisfies requirement limix-inference==1.0.2rc2 from https://files.pythonhosted.org/packages/05/36/dc8947547cb84436e86e1c7845eb0c232e3da227055f2d6d614b8d8a6f28/limix-inference-1.0.2rc2.tar.gz 2025-09-08T06:44:11,685 Removed limix-inference==1.0.2rc2 from https://files.pythonhosted.org/packages/05/36/dc8947547cb84436e86e1c7845eb0c232e3da227055f2d6d614b8d8a6f28/limix-inference-1.0.2rc2.tar.gz from build tracker '/tmp/pip-build-tracker-fhh6dpj8' 2025-09-08T06:44:11,690 Created temporary directory: /tmp/pip-unpack-37_7vc1r 2025-09-08T06:44:11,691 Created temporary directory: /tmp/pip-unpack-xk9mg0ly 2025-09-08T06:44:11,691 Building wheels for collected packages: limix-inference 2025-09-08T06:44:11,692 Created temporary directory: /tmp/pip-wheel-n23c1c1o 2025-09-08T06:44:11,693 DEPRECATION: Building 'limix-inference' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'limix-inference'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T06:44:11,694 Building wheel for limix-inference (setup.py): started 2025-09-08T06:44:11,695 Destination directory: /tmp/pip-wheel-n23c1c1o 2025-09-08T06:44:11,695 Running command python setup.py bdist_wheel 2025-09-08T06:44:12,707 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:12,707 !! 2025-09-08T06:44:12,707 ******************************************************************************** 2025-09-08T06:44:12,707 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:12,707 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:12,708 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:12,708 or your builds will no longer be supported. 2025-09-08T06:44:12,708 ******************************************************************************** 2025-09-08T06:44:12,708 !! 2025-09-08T06:44:12,708 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:12,915 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:12,915 warnings.warn(msg) 2025-09-08T06:44:13,392 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:13,392 !! 2025-09-08T06:44:13,392 ******************************************************************************** 2025-09-08T06:44:13,392 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:13,393 License :: OSI Approved :: MIT License 2025-09-08T06:44:13,393 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:13,393 ******************************************************************************** 2025-09-08T06:44:13,393 !! 2025-09-08T06:44:13,393 self._finalize_license_expression() 2025-09-08T06:44:13,394 running bdist_wheel 2025-09-08T06:44:13,690 running build 2025-09-08T06:44:13,690 running build_py 2025-09-08T06:44:13,767 creating build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:13,767 copying limix_inference/fruits.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:13,768 copying limix_inference/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:13,769 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:13,769 copying limix_inference/mean/_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:13,770 copying limix_inference/mean/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:13,770 copying limix_inference/mean/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:13,771 copying limix_inference/mean/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:13,772 creating build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:13,772 copying limix_inference/lik/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:13,772 copying limix_inference/lik/_prod.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:13,773 copying limix_inference/lik/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:13,774 creating build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm 2025-09-08T06:44:13,774 copying limix_inference/_fastlmm/_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm 2025-09-08T06:44:13,774 copying limix_inference/_fastlmm/_core.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm 2025-09-08T06:44:13,775 copying limix_inference/_fastlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm 2025-09-08T06:44:13,776 creating build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:13,776 copying limix_inference/_ep/_fixed.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:13,776 copying limix_inference/_ep/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:13,777 copying limix_inference/_ep/_ep.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:13,778 copying limix_inference/_ep/_conditioning.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:13,778 copying limix_inference/_ep/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep 2025-09-08T06:44:13,779 creating build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:13,779 copying limix_inference/liknorm/_machine.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:13,780 copying limix_inference/liknorm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:13,780 copying limix_inference/liknorm/_build.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:13,781 creating build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm 2025-09-08T06:44:13,781 copying limix_inference/_slowlmm/_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm 2025-09-08T06:44:13,782 copying limix_inference/_slowlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm 2025-09-08T06:44:13,782 creating build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:13,783 copying limix_inference/random/_glmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:13,783 copying limix_inference/random/_canonical.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:13,784 copying limix_inference/random/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:13,784 creating build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:13,785 copying limix_inference/link/_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:13,785 copying limix_inference/link/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:13,786 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:13,786 copying limix_inference/cov/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:13,787 copying limix_inference/cov/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:13,787 copying limix_inference/cov/_eye.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:13,787 copying limix_inference/cov/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:13,788 running egg_info 2025-09-08T06:44:13,868 writing limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:13,869 writing dependency_links to limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:13,870 writing requirements to limix_inference.egg-info/requires.txt 2025-09-08T06:44:13,870 writing top-level names to limix_inference.egg-info/top_level.txt 2025-09-08T06:44:13,951 reading manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:13,954 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:13,959 adding license file 'LICENSE' 2025-09-08T06:44:13,964 writing manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:13,965 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference._ep.liknorm' is absent from the `packages` configuration. 2025-09-08T06:44:13,965 !! 2025-09-08T06:44:13,965 ******************************************************************************** 2025-09-08T06:44:13,966 ############################ 2025-09-08T06:44:13,966 # Package would be ignored # 2025-09-08T06:44:13,966 ############################ 2025-09-08T06:44:13,966 Python recognizes 'limix_inference._ep.liknorm' as an importable package[^1], 2025-09-08T06:44:13,966 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:13,966 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:13,966 package, please make sure that 'limix_inference._ep.liknorm' is explicitly added 2025-09-08T06:44:13,966 to the `packages` configuration field. 2025-09-08T06:44:13,966 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:13,967 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:13,967 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:13,967 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:13,967 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:13,967 If you don't want 'limix_inference._ep.liknorm' to be distributed and are 2025-09-08T06:44:13,967 already explicitly excluding 'limix_inference._ep.liknorm' via 2025-09-08T06:44:13,967 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:13,967 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:13,968 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:13,968 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:13,968 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:13,968 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:13,968 even if it does not contain any `.py` files. 2025-09-08T06:44:13,968 On the other hand, currently there is no concept of package data 2025-09-08T06:44:13,968 directory, all directories are treated like packages. 2025-09-08T06:44:13,968 ******************************************************************************** 2025-09-08T06:44:13,969 !! 2025-09-08T06:44:13,969 check.warn(importable) 2025-09-08T06:44:13,969 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference._ep.test' is absent from the `packages` configuration. 2025-09-08T06:44:13,969 !! 2025-09-08T06:44:13,969 ******************************************************************************** 2025-09-08T06:44:13,969 ############################ 2025-09-08T06:44:13,969 # Package would be ignored # 2025-09-08T06:44:13,969 ############################ 2025-09-08T06:44:13,970 Python recognizes 'limix_inference._ep.test' as an importable package[^1], 2025-09-08T06:44:13,970 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:13,970 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:13,970 package, please make sure that 'limix_inference._ep.test' is explicitly added 2025-09-08T06:44:13,970 to the `packages` configuration field. 2025-09-08T06:44:13,970 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:13,970 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:13,970 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:13,971 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:13,971 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:13,971 If you don't want 'limix_inference._ep.test' to be distributed and are 2025-09-08T06:44:13,971 already explicitly excluding 'limix_inference._ep.test' via 2025-09-08T06:44:13,971 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:13,971 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:13,971 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:13,972 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:13,972 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:13,972 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:13,972 even if it does not contain any `.py` files. 2025-09-08T06:44:13,972 On the other hand, currently there is no concept of package data 2025-09-08T06:44:13,972 directory, all directories are treated like packages. 2025-09-08T06:44:13,972 ******************************************************************************** 2025-09-08T06:44:13,973 !! 2025-09-08T06:44:13,973 check.warn(importable) 2025-09-08T06:44:13,973 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference._fastlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:13,973 !! 2025-09-08T06:44:13,973 ******************************************************************************** 2025-09-08T06:44:13,973 ############################ 2025-09-08T06:44:13,973 # Package would be ignored # 2025-09-08T06:44:13,973 ############################ 2025-09-08T06:44:13,973 Python recognizes 'limix_inference._fastlmm.test' as an importable package[^1], 2025-09-08T06:44:13,973 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:13,974 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:13,974 package, please make sure that 'limix_inference._fastlmm.test' is explicitly added 2025-09-08T06:44:13,974 to the `packages` configuration field. 2025-09-08T06:44:13,974 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:13,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:13,974 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:13,974 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:13,975 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:13,975 If you don't want 'limix_inference._fastlmm.test' to be distributed and are 2025-09-08T06:44:13,975 already explicitly excluding 'limix_inference._fastlmm.test' via 2025-09-08T06:44:13,975 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:13,975 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:13,975 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:13,975 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:13,975 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:13,976 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:13,976 even if it does not contain any `.py` files. 2025-09-08T06:44:13,976 On the other hand, currently there is no concept of package data 2025-09-08T06:44:13,976 directory, all directories are treated like packages. 2025-09-08T06:44:13,976 ******************************************************************************** 2025-09-08T06:44:13,976 !! 2025-09-08T06:44:13,976 check.warn(importable) 2025-09-08T06:44:13,976 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference._slowlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:13,977 !! 2025-09-08T06:44:13,977 ******************************************************************************** 2025-09-08T06:44:13,977 ############################ 2025-09-08T06:44:13,977 # Package would be ignored # 2025-09-08T06:44:13,977 ############################ 2025-09-08T06:44:13,977 Python recognizes 'limix_inference._slowlmm.test' as an importable package[^1], 2025-09-08T06:44:13,977 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:13,977 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:13,977 package, please make sure that 'limix_inference._slowlmm.test' is explicitly added 2025-09-08T06:44:13,978 to the `packages` configuration field. 2025-09-08T06:44:13,978 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:13,978 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:13,978 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:13,978 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:13,978 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:13,978 If you don't want 'limix_inference._slowlmm.test' to be distributed and are 2025-09-08T06:44:13,978 already explicitly excluding 'limix_inference._slowlmm.test' via 2025-09-08T06:44:13,979 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:13,979 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:13,979 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:13,979 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:13,979 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:13,979 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:13,979 even if it does not contain any `.py` files. 2025-09-08T06:44:13,980 On the other hand, currently there is no concept of package data 2025-09-08T06:44:13,980 directory, all directories are treated like packages. 2025-09-08T06:44:13,980 ******************************************************************************** 2025-09-08T06:44:13,980 !! 2025-09-08T06:44:13,980 check.warn(importable) 2025-09-08T06:44:13,980 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.cov.test' is absent from the `packages` configuration. 2025-09-08T06:44:13,980 !! 2025-09-08T06:44:13,980 ******************************************************************************** 2025-09-08T06:44:13,980 ############################ 2025-09-08T06:44:13,981 # Package would be ignored # 2025-09-08T06:44:13,981 ############################ 2025-09-08T06:44:13,981 Python recognizes 'limix_inference.cov.test' as an importable package[^1], 2025-09-08T06:44:13,981 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:13,981 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:13,981 package, please make sure that 'limix_inference.cov.test' is explicitly added 2025-09-08T06:44:13,981 to the `packages` configuration field. 2025-09-08T06:44:13,981 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:13,982 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:13,982 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:13,982 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:13,982 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:13,982 If you don't want 'limix_inference.cov.test' to be distributed and are 2025-09-08T06:44:13,982 already explicitly excluding 'limix_inference.cov.test' via 2025-09-08T06:44:13,982 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:13,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:13,982 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:13,983 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:13,983 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:13,983 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:13,983 even if it does not contain any `.py` files. 2025-09-08T06:44:13,983 On the other hand, currently there is no concept of package data 2025-09-08T06:44:13,983 directory, all directories are treated like packages. 2025-09-08T06:44:13,984 ******************************************************************************** 2025-09-08T06:44:13,984 !! 2025-09-08T06:44:13,984 check.warn(importable) 2025-09-08T06:44:13,984 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.link.test' is absent from the `packages` configuration. 2025-09-08T06:44:13,984 !! 2025-09-08T06:44:13,984 ******************************************************************************** 2025-09-08T06:44:13,984 ############################ 2025-09-08T06:44:13,984 # Package would be ignored # 2025-09-08T06:44:13,984 ############################ 2025-09-08T06:44:13,984 Python recognizes 'limix_inference.link.test' as an importable package[^1], 2025-09-08T06:44:13,985 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:13,985 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:13,985 package, please make sure that 'limix_inference.link.test' is explicitly added 2025-09-08T06:44:13,985 to the `packages` configuration field. 2025-09-08T06:44:13,985 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:13,985 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:13,985 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:13,985 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:13,986 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:13,986 If you don't want 'limix_inference.link.test' to be distributed and are 2025-09-08T06:44:13,986 already explicitly excluding 'limix_inference.link.test' via 2025-09-08T06:44:13,986 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:13,986 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:13,986 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:13,986 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:13,987 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:13,987 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:13,987 even if it does not contain any `.py` files. 2025-09-08T06:44:13,987 On the other hand, currently there is no concept of package data 2025-09-08T06:44:13,987 directory, all directories are treated like packages. 2025-09-08T06:44:13,987 ******************************************************************************** 2025-09-08T06:44:13,987 !! 2025-09-08T06:44:13,987 check.warn(importable) 2025-09-08T06:44:13,987 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.mean.test' is absent from the `packages` configuration. 2025-09-08T06:44:13,988 !! 2025-09-08T06:44:13,988 ******************************************************************************** 2025-09-08T06:44:13,988 ############################ 2025-09-08T06:44:13,988 # Package would be ignored # 2025-09-08T06:44:13,988 ############################ 2025-09-08T06:44:13,988 Python recognizes 'limix_inference.mean.test' as an importable package[^1], 2025-09-08T06:44:13,988 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:13,988 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:13,988 package, please make sure that 'limix_inference.mean.test' is explicitly added 2025-09-08T06:44:13,989 to the `packages` configuration field. 2025-09-08T06:44:13,989 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:13,989 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:13,989 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:13,989 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:13,989 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:13,989 If you don't want 'limix_inference.mean.test' to be distributed and are 2025-09-08T06:44:13,990 already explicitly excluding 'limix_inference.mean.test' via 2025-09-08T06:44:13,990 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:13,990 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:13,990 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:13,990 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:13,990 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:13,990 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:13,990 even if it does not contain any `.py` files. 2025-09-08T06:44:13,991 On the other hand, currently there is no concept of package data 2025-09-08T06:44:13,991 directory, all directories are treated like packages. 2025-09-08T06:44:13,991 ******************************************************************************** 2025-09-08T06:44:13,991 !! 2025-09-08T06:44:13,991 check.warn(importable) 2025-09-08T06:44:13,991 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.random.test' is absent from the `packages` configuration. 2025-09-08T06:44:13,991 !! 2025-09-08T06:44:13,991 ******************************************************************************** 2025-09-08T06:44:13,992 ############################ 2025-09-08T06:44:13,992 # Package would be ignored # 2025-09-08T06:44:13,992 ############################ 2025-09-08T06:44:13,992 Python recognizes 'limix_inference.random.test' as an importable package[^1], 2025-09-08T06:44:13,992 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:13,992 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:13,992 package, please make sure that 'limix_inference.random.test' is explicitly added 2025-09-08T06:44:13,992 to the `packages` configuration field. 2025-09-08T06:44:13,992 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:13,993 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:13,993 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:13,993 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:13,993 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:13,993 If you don't want 'limix_inference.random.test' to be distributed and are 2025-09-08T06:44:13,993 already explicitly excluding 'limix_inference.random.test' via 2025-09-08T06:44:13,993 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:13,993 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:13,994 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:13,994 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:13,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:13,994 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:13,994 even if it does not contain any `.py` files. 2025-09-08T06:44:13,994 On the other hand, currently there is no concept of package data 2025-09-08T06:44:13,994 directory, all directories are treated like packages. 2025-09-08T06:44:13,994 ******************************************************************************** 2025-09-08T06:44:13,995 !! 2025-09-08T06:44:13,995 check.warn(importable) 2025-09-08T06:44:13,995 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.test' is absent from the `packages` configuration. 2025-09-08T06:44:13,995 !! 2025-09-08T06:44:13,995 ******************************************************************************** 2025-09-08T06:44:13,995 ############################ 2025-09-08T06:44:13,995 # Package would be ignored # 2025-09-08T06:44:13,995 ############################ 2025-09-08T06:44:13,995 Python recognizes 'limix_inference.test' as an importable package[^1], 2025-09-08T06:44:13,996 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:13,996 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:13,996 package, please make sure that 'limix_inference.test' is explicitly added 2025-09-08T06:44:13,996 to the `packages` configuration field. 2025-09-08T06:44:13,996 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:13,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:13,996 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:13,997 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:13,997 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:13,997 If you don't want 'limix_inference.test' to be distributed and are 2025-09-08T06:44:13,997 already explicitly excluding 'limix_inference.test' via 2025-09-08T06:44:13,997 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:13,997 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:13,997 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:13,997 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:13,998 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:13,998 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:13,998 even if it does not contain any `.py` files. 2025-09-08T06:44:13,998 On the other hand, currently there is no concept of package data 2025-09-08T06:44:13,998 directory, all directories are treated like packages. 2025-09-08T06:44:13,998 ******************************************************************************** 2025-09-08T06:44:13,998 !! 2025-09-08T06:44:13,999 check.warn(importable) 2025-09-08T06:44:13,999 creating build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:13,999 copying limix_inference/test/test_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:13,999 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:13,999 copying limix_inference/mean/test/test_linear_mean.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:13,999 copying limix_inference/mean/test/test_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:13,999 creating build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm/test 2025-09-08T06:44:13,999 copying limix_inference/_fastlmm/test/test_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_fastlmm/test 2025-09-08T06:44:13,999 creating build/lib.linux-armv7l-cpython-313/limix_inference/_ep/liknorm 2025-09-08T06:44:13,999 copying limix_inference/_ep/liknorm/_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep/liknorm 2025-09-08T06:44:14,000 creating build/lib.linux-armv7l-cpython-313/limix_inference/_ep/test 2025-09-08T06:44:14,000 copying limix_inference/_ep/test/test_bernoulli.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep/test 2025-09-08T06:44:14,000 copying limix_inference/_ep/test/test_binomial.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep/test 2025-09-08T06:44:14,000 copying limix_inference/_ep/test/test_poisson.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_ep/test 2025-09-08T06:44:14,000 creating build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm/test 2025-09-08T06:44:14,000 copying limix_inference/_slowlmm/test/test_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/_slowlmm/test 2025-09-08T06:44:14,000 creating build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:14,000 copying limix_inference/random/test/test_sampling.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:14,000 creating build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:14,000 copying limix_inference/link/test/test_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:14,000 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:14,001 copying limix_inference/cov/test/test_eye_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:14,001 copying limix_inference/cov/test/test_linear_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:14,001 copying limix_inference/cov/test/test_sum_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:14,001 running build_ext 2025-09-08T06:44:14,001 generating cffi module 'build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c' 2025-09-08T06:44:14,001 creating build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:14,348 building 'limix_inference.liknorm._ffi' extension 2025-09-08T06:44:14,349 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:14,349 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.o 2025-09-08T06:44:14,628 build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c:574:14: fatal error: liknorm/liknorm.h: No such file or directory 2025-09-08T06:44:14,628 574 | #include "liknorm/liknorm.h" 2025-09-08T06:44:14,629 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T06:44:14,629 compilation terminated. 2025-09-08T06:44:14,633 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T06:44:14,796 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T06:44:14,808 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T06:44:14,808 exec(compile('"'"''"'"''"'"' 2025-09-08T06:44:14,808 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:44:14,808 # 2025-09-08T06:44:14,808 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:44:14,808 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:44:14,808 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:44:14,808 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:44:14,808 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:44:14,808 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:44:14,808 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:44:14,808 import os, sys, tokenize, traceback 2025-09-08T06:44:14,808 2025-09-08T06:44:14,808 try: 2025-09-08T06:44:14,808 import setuptools 2025-09-08T06:44:14,808 except ImportError: 2025-09-08T06:44:14,808 print( 2025-09-08T06:44:14,808 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:44:14,808 "the build environment with exception:", 2025-09-08T06:44:14,808 file=sys.stderr, 2025-09-08T06:44:14,808 ) 2025-09-08T06:44:14,808 traceback.print_exc() 2025-09-08T06:44:14,808 sys.exit(1) 2025-09-08T06:44:14,808 2025-09-08T06:44:14,808 __file__ = %r 2025-09-08T06:44:14,808 sys.argv[0] = __file__ 2025-09-08T06:44:14,808 2025-09-08T06:44:14,808 if os.path.exists(__file__): 2025-09-08T06:44:14,808 filename = __file__ 2025-09-08T06:44:14,808 with tokenize.open(__file__) as f: 2025-09-08T06:44:14,808 setup_py_code = f.read() 2025-09-08T06:44:14,808 else: 2025-09-08T06:44:14,808 filename = "" 2025-09-08T06:44:14,808 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:44:14,808 2025-09-08T06:44:14,808 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:44:14,808 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-27hstj5f/limix-inference_99301ffea0b94108ac2a92b0bbc88d4e/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-n23c1c1o[/] 2025-09-08T06:44:14,808 [bold magenta]cwd[/]: /tmp/pip-wheel-27hstj5f/limix-inference_99301ffea0b94108ac2a92b0bbc88d4e/ 2025-09-08T06:44:14,809 Building wheel for limix-inference (setup.py): finished with status 'error' 2025-09-08T06:44:14,809 ERROR: Failed building wheel for limix-inference 2025-09-08T06:44:14,810 Running setup.py clean for limix-inference 2025-09-08T06:44:14,811 Running command python setup.py clean 2025-09-08T06:44:15,827 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:15,827 !! 2025-09-08T06:44:15,827 ******************************************************************************** 2025-09-08T06:44:15,827 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:15,827 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:15,827 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:15,827 or your builds will no longer be supported. 2025-09-08T06:44:15,828 ******************************************************************************** 2025-09-08T06:44:15,828 !! 2025-09-08T06:44:15,828 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:16,029 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:16,029 warnings.warn(msg) 2025-09-08T06:44:16,502 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:16,502 !! 2025-09-08T06:44:16,503 ******************************************************************************** 2025-09-08T06:44:16,503 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:16,503 License :: OSI Approved :: MIT License 2025-09-08T06:44:16,503 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:16,503 ******************************************************************************** 2025-09-08T06:44:16,503 !! 2025-09-08T06:44:16,503 self._finalize_license_expression() 2025-09-08T06:44:16,579 running clean 2025-09-08T06:44:16,729 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:16,729 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:16,732 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T06:44:16,732 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T06:44:16,732 removing 'build' 2025-09-08T06:44:16,857 Failed to build limix-inference 2025-09-08T06:44:16,858 ERROR: Failed to build one or more wheels 2025-09-08T06:44:16,859 Exception information: 2025-09-08T06:44:16,859 Traceback (most recent call last): 2025-09-08T06:44:16,859 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:44:16,859 status = _inner_run() 2025-09-08T06:44:16,859 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:44:16,859 return self.run(options, args) 2025-09-08T06:44:16,859 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:44:16,859 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:44:16,859 return func(self, options, args) 2025-09-08T06:44:16,859 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T06:44:16,859 raise CommandError("Failed to build one or more wheels") 2025-09-08T06:44:16,859 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T06:44:16,863 Removed build tracker: '/tmp/pip-build-tracker-fhh6dpj8'