2025-09-08T06:44:10,489 Created temporary directory: /tmp/pip-build-tracker-ahm52iff 2025-09-08T06:44:10,490 Initialized build tracking at /tmp/pip-build-tracker-ahm52iff 2025-09-08T06:44:10,490 Created build tracker: /tmp/pip-build-tracker-ahm52iff 2025-09-08T06:44:10,490 Entered build tracker: /tmp/pip-build-tracker-ahm52iff 2025-09-08T06:44:10,490 Created temporary directory: /tmp/pip-wheel-b1rkcd64 2025-09-08T06:44:10,493 Created temporary directory: /tmp/pip-ephem-wheel-cache-1uzdzpyy 2025-09-08T06:44:10,552 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T06:44:10,554 2 location(s) to search for versions of limix-inference: 2025-09-08T06:44:10,554 * https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,554 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,555 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,555 Getting page 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https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T06:44:10,640 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,640 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,641 Found index url https://www.piwheels.org/simple/ 2025-09-08T06:44:10,726 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T06:44:10,729 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,729 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,729 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,729 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,729 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,729 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,730 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,730 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,730 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,730 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,730 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,759 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T06:44:10,761 Collecting limix-inference==1.0.3.dev0 2025-09-08T06:44:10,762 Created temporary directory: /tmp/pip-unpack-nck4pqih 2025-09-08T06:44:10,897 Downloading limix-inference-1.0.3.dev0.tar.gz (25 kB) 2025-09-08T06:44:10,957 Added limix-inference==1.0.3.dev0 from https://files.pythonhosted.org/packages/74/39/b0f4e1d92fa676c3f8c517e0e660ecd3f37f71d0d6afb90341d70221ab4a/limix-inference-1.0.3.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-ahm52iff' 2025-09-08T06:44:10,958 Running setup.py (path:/tmp/pip-wheel-b1rkcd64/limix-inference_7e385ccf5dcf404d924836cd2e4d3058/setup.py) egg_info for package limix-inference 2025-09-08T06:44:10,958 Created temporary directory: /tmp/pip-pip-egg-info-ydkh1sz_ 2025-09-08T06:44:10,958 Preparing metadata (setup.py): started 2025-09-08T06:44:10,959 Running command python setup.py egg_info 2025-09-08T06:44:11,929 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:11,929 !! 2025-09-08T06:44:11,929 ******************************************************************************** 2025-09-08T06:44:11,930 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:11,930 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:11,930 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:11,930 or your builds will no longer be supported. 2025-09-08T06:44:11,930 ******************************************************************************** 2025-09-08T06:44:11,930 !! 2025-09-08T06:44:11,930 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:12,039 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:12,039 warnings.warn(msg) 2025-09-08T06:44:12,512 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.0.3dev0' to '1.0.3.dev0' 2025-09-08T06:44:12,512 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T06:44:12,515 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:12,515 !! 2025-09-08T06:44:12,515 ******************************************************************************** 2025-09-08T06:44:12,515 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:12,515 License :: OSI Approved :: MIT License 2025-09-08T06:44:12,516 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:12,516 ******************************************************************************** 2025-09-08T06:44:12,516 !! 2025-09-08T06:44:12,516 self._finalize_license_expression() 2025-09-08T06:44:12,587 running egg_info 2025-09-08T06:44:12,659 creating /tmp/pip-pip-egg-info-ydkh1sz_/limix_inference.egg-info 2025-09-08T06:44:12,660 writing /tmp/pip-pip-egg-info-ydkh1sz_/limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:12,661 writing dependency_links to /tmp/pip-pip-egg-info-ydkh1sz_/limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:12,662 writing requirements to /tmp/pip-pip-egg-info-ydkh1sz_/limix_inference.egg-info/requires.txt 2025-09-08T06:44:12,662 writing top-level names to /tmp/pip-pip-egg-info-ydkh1sz_/limix_inference.egg-info/top_level.txt 2025-09-08T06:44:12,662 writing manifest file '/tmp/pip-pip-egg-info-ydkh1sz_/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:12,886 reading manifest file '/tmp/pip-pip-egg-info-ydkh1sz_/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:12,887 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:12,892 adding license file 'LICENSE' 2025-09-08T06:44:12,896 writing manifest file '/tmp/pip-pip-egg-info-ydkh1sz_/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:13,022 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T06:44:13,027 Source in /tmp/pip-wheel-b1rkcd64/limix-inference_7e385ccf5dcf404d924836cd2e4d3058 has version 1.0.3.dev0, which satisfies requirement limix-inference==1.0.3.dev0 from https://files.pythonhosted.org/packages/74/39/b0f4e1d92fa676c3f8c517e0e660ecd3f37f71d0d6afb90341d70221ab4a/limix-inference-1.0.3.dev0.tar.gz 2025-09-08T06:44:13,027 Removed limix-inference==1.0.3.dev0 from https://files.pythonhosted.org/packages/74/39/b0f4e1d92fa676c3f8c517e0e660ecd3f37f71d0d6afb90341d70221ab4a/limix-inference-1.0.3.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-ahm52iff' 2025-09-08T06:44:13,032 Created temporary directory: /tmp/pip-unpack-ab285v0d 2025-09-08T06:44:13,033 Created temporary directory: /tmp/pip-unpack-oyd_m80t 2025-09-08T06:44:13,033 Building wheels for collected packages: limix-inference 2025-09-08T06:44:13,034 Created temporary directory: /tmp/pip-wheel-hxni6i0h 2025-09-08T06:44:13,034 DEPRECATION: Building 'limix-inference' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'limix-inference'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T06:44:13,035 Building wheel for limix-inference (setup.py): started 2025-09-08T06:44:13,036 Destination directory: /tmp/pip-wheel-hxni6i0h 2025-09-08T06:44:13,036 Running command python setup.py bdist_wheel 2025-09-08T06:44:14,054 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:14,054 !! 2025-09-08T06:44:14,055 ******************************************************************************** 2025-09-08T06:44:14,055 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:14,055 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:14,055 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:14,055 or your builds will no longer be supported. 2025-09-08T06:44:14,055 ******************************************************************************** 2025-09-08T06:44:14,055 !! 2025-09-08T06:44:14,055 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:14,169 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:14,169 warnings.warn(msg) 2025-09-08T06:44:14,639 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.0.3dev0' to '1.0.3.dev0' 2025-09-08T06:44:14,639 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T06:44:14,642 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:14,642 !! 2025-09-08T06:44:14,642 ******************************************************************************** 2025-09-08T06:44:14,642 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:14,642 License :: OSI Approved :: MIT License 2025-09-08T06:44:14,643 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:14,643 ******************************************************************************** 2025-09-08T06:44:14,643 !! 2025-09-08T06:44:14,643 self._finalize_license_expression() 2025-09-08T06:44:14,643 running bdist_wheel 2025-09-08T06:44:14,943 running build 2025-09-08T06:44:14,943 running build_py 2025-09-08T06:44:15,021 creating build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:15,021 copying limix_inference/fruits.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:15,022 copying limix_inference/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:15,023 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,023 copying limix_inference/mean/_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,024 copying limix_inference/mean/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,024 copying limix_inference/mean/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,025 copying limix_inference/mean/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,025 creating build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,026 copying limix_inference/lik/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,026 copying limix_inference/lik/_prod.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,027 copying limix_inference/lik/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,027 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:44:15,028 copying limix_inference/lmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:44:15,028 creating build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,029 copying limix_inference/liknorm/_machine.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,029 copying limix_inference/liknorm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,030 copying limix_inference/liknorm/_build.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,030 creating build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,031 copying limix_inference/random/_glmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,031 copying limix_inference/random/_canonical.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,032 copying limix_inference/random/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,032 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:44:15,033 copying limix_inference/glmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:44:15,033 creating build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:15,033 copying limix_inference/link/_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:15,034 copying limix_inference/link/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:15,035 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,035 copying limix_inference/cov/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,035 copying limix_inference/cov/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,036 copying limix_inference/cov/_eye.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,036 copying limix_inference/cov/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,037 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,037 copying limix_inference/lmm/_fastlmm/_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,038 copying limix_inference/lmm/_fastlmm/_core.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,039 copying limix_inference/lmm/_fastlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,039 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:15,039 copying limix_inference/lmm/_slowlmm/_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:15,040 copying limix_inference/lmm/_slowlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:15,041 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,041 copying limix_inference/glmm/_ep/_fixed.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,042 copying limix_inference/glmm/_ep/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,042 copying limix_inference/glmm/_ep/_ep.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,043 copying limix_inference/glmm/_ep/_conditioning.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,043 copying limix_inference/glmm/_ep/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,044 running egg_info 2025-09-08T06:44:15,125 writing limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:15,127 writing dependency_links to limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:15,127 writing requirements to limix_inference.egg-info/requires.txt 2025-09-08T06:44:15,128 writing top-level names to limix_inference.egg-info/top_level.txt 2025-09-08T06:44:15,207 reading manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:15,211 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:15,216 adding license file 'LICENSE' 2025-09-08T06:44:15,220 writing manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:15,221 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.cov.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,222 !! 2025-09-08T06:44:15,222 ******************************************************************************** 2025-09-08T06:44:15,222 ############################ 2025-09-08T06:44:15,222 # Package would be ignored # 2025-09-08T06:44:15,222 ############################ 2025-09-08T06:44:15,222 Python recognizes 'limix_inference.cov.test' as an importable package[^1], 2025-09-08T06:44:15,222 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,222 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,222 package, please make sure that 'limix_inference.cov.test' is explicitly added 2025-09-08T06:44:15,223 to the `packages` configuration field. 2025-09-08T06:44:15,223 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,223 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,223 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,223 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,223 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,223 If you don't want 'limix_inference.cov.test' to be distributed and are 2025-09-08T06:44:15,224 already explicitly excluding 'limix_inference.cov.test' via 2025-09-08T06:44:15,224 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,224 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,224 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,224 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,224 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,224 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,224 even if it does not contain any `.py` files. 2025-09-08T06:44:15,225 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,225 directory, all directories are treated like packages. 2025-09-08T06:44:15,225 ******************************************************************************** 2025-09-08T06:44:15,225 !! 2025-09-08T06:44:15,225 check.warn(importable) 2025-09-08T06:44:15,225 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.glmm._ep.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,225 !! 2025-09-08T06:44:15,225 ******************************************************************************** 2025-09-08T06:44:15,225 ############################ 2025-09-08T06:44:15,226 # Package would be ignored # 2025-09-08T06:44:15,226 ############################ 2025-09-08T06:44:15,226 Python recognizes 'limix_inference.glmm._ep.test' as an importable package[^1], 2025-09-08T06:44:15,226 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,226 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,226 package, please make sure that 'limix_inference.glmm._ep.test' is explicitly added 2025-09-08T06:44:15,226 to the `packages` configuration field. 2025-09-08T06:44:15,226 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,226 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,227 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,227 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,227 If you don't want 'limix_inference.glmm._ep.test' to be distributed and are 2025-09-08T06:44:15,227 already explicitly excluding 'limix_inference.glmm._ep.test' via 2025-09-08T06:44:15,227 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,227 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,227 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,228 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,228 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,228 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,228 even if it does not contain any `.py` files. 2025-09-08T06:44:15,228 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,228 directory, all directories are treated like packages. 2025-09-08T06:44:15,228 ******************************************************************************** 2025-09-08T06:44:15,229 !! 2025-09-08T06:44:15,229 check.warn(importable) 2025-09-08T06:44:15,229 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.link.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,229 !! 2025-09-08T06:44:15,229 ******************************************************************************** 2025-09-08T06:44:15,229 ############################ 2025-09-08T06:44:15,229 # Package would be ignored # 2025-09-08T06:44:15,229 ############################ 2025-09-08T06:44:15,229 Python recognizes 'limix_inference.link.test' as an importable package[^1], 2025-09-08T06:44:15,229 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,230 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,230 package, please make sure that 'limix_inference.link.test' is explicitly added 2025-09-08T06:44:15,230 to the `packages` configuration field. 2025-09-08T06:44:15,230 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,230 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,230 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,230 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,231 If you don't want 'limix_inference.link.test' to be distributed and are 2025-09-08T06:44:15,231 already explicitly excluding 'limix_inference.link.test' via 2025-09-08T06:44:15,231 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,231 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,231 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,231 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,231 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,232 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,232 even if it does not contain any `.py` files. 2025-09-08T06:44:15,232 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,232 directory, all directories are treated like packages. 2025-09-08T06:44:15,232 ******************************************************************************** 2025-09-08T06:44:15,232 !! 2025-09-08T06:44:15,232 check.warn(importable) 2025-09-08T06:44:15,232 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._fastlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,232 !! 2025-09-08T06:44:15,233 ******************************************************************************** 2025-09-08T06:44:15,233 ############################ 2025-09-08T06:44:15,233 # Package would be ignored # 2025-09-08T06:44:15,233 ############################ 2025-09-08T06:44:15,233 Python recognizes 'limix_inference.lmm._fastlmm.test' as an importable package[^1], 2025-09-08T06:44:15,233 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,233 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,233 package, please make sure that 'limix_inference.lmm._fastlmm.test' is explicitly added 2025-09-08T06:44:15,233 to the `packages` configuration field. 2025-09-08T06:44:15,234 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,234 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,234 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,234 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,234 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,234 If you don't want 'limix_inference.lmm._fastlmm.test' to be distributed and are 2025-09-08T06:44:15,234 already explicitly excluding 'limix_inference.lmm._fastlmm.test' via 2025-09-08T06:44:15,234 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,235 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,235 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,235 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,235 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,235 even if it does not contain any `.py` files. 2025-09-08T06:44:15,235 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,235 directory, all directories are treated like packages. 2025-09-08T06:44:15,236 ******************************************************************************** 2025-09-08T06:44:15,236 !! 2025-09-08T06:44:15,236 check.warn(importable) 2025-09-08T06:44:15,236 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._slowlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,236 !! 2025-09-08T06:44:15,236 ******************************************************************************** 2025-09-08T06:44:15,236 ############################ 2025-09-08T06:44:15,236 # Package would be ignored # 2025-09-08T06:44:15,236 ############################ 2025-09-08T06:44:15,236 Python recognizes 'limix_inference.lmm._slowlmm.test' as an importable package[^1], 2025-09-08T06:44:15,237 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,237 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,237 package, please make sure that 'limix_inference.lmm._slowlmm.test' is explicitly added 2025-09-08T06:44:15,237 to the `packages` configuration field. 2025-09-08T06:44:15,237 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,237 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,237 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,237 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,238 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,238 If you don't want 'limix_inference.lmm._slowlmm.test' to be distributed and are 2025-09-08T06:44:15,238 already explicitly excluding 'limix_inference.lmm._slowlmm.test' via 2025-09-08T06:44:15,238 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,238 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,238 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,238 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,239 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,239 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,239 even if it does not contain any `.py` files. 2025-09-08T06:44:15,239 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,239 directory, all directories are treated like packages. 2025-09-08T06:44:15,239 ******************************************************************************** 2025-09-08T06:44:15,239 !! 2025-09-08T06:44:15,239 check.warn(importable) 2025-09-08T06:44:15,239 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.mean.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,240 !! 2025-09-08T06:44:15,240 ******************************************************************************** 2025-09-08T06:44:15,240 ############################ 2025-09-08T06:44:15,240 # Package would be ignored # 2025-09-08T06:44:15,240 ############################ 2025-09-08T06:44:15,240 Python recognizes 'limix_inference.mean.test' as an importable package[^1], 2025-09-08T06:44:15,240 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,240 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,240 package, please make sure that 'limix_inference.mean.test' is explicitly added 2025-09-08T06:44:15,241 to the `packages` configuration field. 2025-09-08T06:44:15,241 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,241 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,241 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,241 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,241 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,241 If you don't want 'limix_inference.mean.test' to be distributed and are 2025-09-08T06:44:15,241 already explicitly excluding 'limix_inference.mean.test' via 2025-09-08T06:44:15,241 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,242 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,242 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,242 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,242 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,242 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,242 even if it does not contain any `.py` files. 2025-09-08T06:44:15,242 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,243 directory, all directories are treated like packages. 2025-09-08T06:44:15,243 ******************************************************************************** 2025-09-08T06:44:15,243 !! 2025-09-08T06:44:15,243 check.warn(importable) 2025-09-08T06:44:15,243 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.random.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,243 !! 2025-09-08T06:44:15,243 ******************************************************************************** 2025-09-08T06:44:15,243 ############################ 2025-09-08T06:44:15,243 # Package would be ignored # 2025-09-08T06:44:15,243 ############################ 2025-09-08T06:44:15,244 Python recognizes 'limix_inference.random.test' as an importable package[^1], 2025-09-08T06:44:15,244 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,244 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,244 package, please make sure that 'limix_inference.random.test' is explicitly added 2025-09-08T06:44:15,244 to the `packages` configuration field. 2025-09-08T06:44:15,244 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,244 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,244 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,244 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,245 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,245 If you don't want 'limix_inference.random.test' to be distributed and are 2025-09-08T06:44:15,245 already explicitly excluding 'limix_inference.random.test' via 2025-09-08T06:44:15,245 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,245 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,245 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,245 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,246 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,246 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,246 even if it does not contain any `.py` files. 2025-09-08T06:44:15,246 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,246 directory, all directories are treated like packages. 2025-09-08T06:44:15,246 ******************************************************************************** 2025-09-08T06:44:15,246 !! 2025-09-08T06:44:15,246 check.warn(importable) 2025-09-08T06:44:15,246 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,247 !! 2025-09-08T06:44:15,247 ******************************************************************************** 2025-09-08T06:44:15,247 ############################ 2025-09-08T06:44:15,247 # Package would be ignored # 2025-09-08T06:44:15,247 ############################ 2025-09-08T06:44:15,247 Python recognizes 'limix_inference.test' as an importable package[^1], 2025-09-08T06:44:15,247 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,247 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,248 package, please make sure that 'limix_inference.test' is explicitly added 2025-09-08T06:44:15,248 to the `packages` configuration field. 2025-09-08T06:44:15,248 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,248 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,248 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,248 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,248 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,248 If you don't want 'limix_inference.test' to be distributed and are 2025-09-08T06:44:15,249 already explicitly excluding 'limix_inference.test' via 2025-09-08T06:44:15,249 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,249 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,249 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,249 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,249 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,249 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,250 even if it does not contain any `.py` files. 2025-09-08T06:44:15,250 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,250 directory, all directories are treated like packages. 2025-09-08T06:44:15,250 ******************************************************************************** 2025-09-08T06:44:15,250 !! 2025-09-08T06:44:15,250 check.warn(importable) 2025-09-08T06:44:15,250 creating build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:15,250 copying limix_inference/test/test_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:15,250 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:15,250 copying limix_inference/mean/test/test_linear_mean.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:15,250 copying limix_inference/mean/test/test_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:15,251 creating build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:15,251 copying limix_inference/random/test/test_sampling.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:15,251 creating build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:15,251 copying limix_inference/link/test/test_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:15,251 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,251 copying limix_inference/cov/test/test_eye_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,251 copying limix_inference/cov/test/test_linear_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,251 copying limix_inference/cov/test/test_sum_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,251 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:44:15,251 copying limix_inference/lmm/_fastlmm/test/test_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:44:15,251 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:44:15,252 copying limix_inference/lmm/_slowlmm/test/test_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:44:15,252 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,252 copying limix_inference/glmm/_ep/test/test_bernoulli.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,252 copying limix_inference/glmm/_ep/test/test_binomial.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,252 copying limix_inference/glmm/_ep/test/test_poisson.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,252 running build_ext 2025-09-08T06:44:15,252 generating cffi module 'build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c' 2025-09-08T06:44:15,252 creating build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:15,565 building 'limix_inference.liknorm._ffi' extension 2025-09-08T06:44:15,566 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:15,566 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.o 2025-09-08T06:44:15,838 build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c:574:14: fatal error: liknorm/liknorm.h: No such file or directory 2025-09-08T06:44:15,838 574 | #include "liknorm/liknorm.h" 2025-09-08T06:44:15,838 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T06:44:15,838 compilation terminated. 2025-09-08T06:44:15,841 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T06:44:16,003 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T06:44:16,015 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T06:44:16,015 exec(compile('"'"''"'"''"'"' 2025-09-08T06:44:16,015 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:44:16,015 # 2025-09-08T06:44:16,015 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:44:16,015 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:44:16,015 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:44:16,015 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:44:16,015 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:44:16,015 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:44:16,015 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:44:16,015 import os, sys, tokenize, traceback 2025-09-08T06:44:16,015 2025-09-08T06:44:16,015 try: 2025-09-08T06:44:16,015 import setuptools 2025-09-08T06:44:16,015 except ImportError: 2025-09-08T06:44:16,015 print( 2025-09-08T06:44:16,015 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:44:16,015 "the build environment with exception:", 2025-09-08T06:44:16,015 file=sys.stderr, 2025-09-08T06:44:16,015 ) 2025-09-08T06:44:16,015 traceback.print_exc() 2025-09-08T06:44:16,015 sys.exit(1) 2025-09-08T06:44:16,015 2025-09-08T06:44:16,015 __file__ = %r 2025-09-08T06:44:16,015 sys.argv[0] = __file__ 2025-09-08T06:44:16,015 2025-09-08T06:44:16,015 if os.path.exists(__file__): 2025-09-08T06:44:16,015 filename = __file__ 2025-09-08T06:44:16,015 with tokenize.open(__file__) as f: 2025-09-08T06:44:16,015 setup_py_code = f.read() 2025-09-08T06:44:16,015 else: 2025-09-08T06:44:16,015 filename = "" 2025-09-08T06:44:16,015 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:44:16,015 2025-09-08T06:44:16,015 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:44:16,015 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-b1rkcd64/limix-inference_7e385ccf5dcf404d924836cd2e4d3058/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-hxni6i0h[/] 2025-09-08T06:44:16,015 [bold magenta]cwd[/]: /tmp/pip-wheel-b1rkcd64/limix-inference_7e385ccf5dcf404d924836cd2e4d3058/ 2025-09-08T06:44:16,015 Building wheel for limix-inference (setup.py): finished with status 'error' 2025-09-08T06:44:16,016 ERROR: Failed building wheel for limix-inference 2025-09-08T06:44:16,017 Running setup.py clean for limix-inference 2025-09-08T06:44:16,018 Running command python setup.py clean 2025-09-08T06:44:17,030 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:17,030 !! 2025-09-08T06:44:17,030 ******************************************************************************** 2025-09-08T06:44:17,031 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:17,031 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:17,031 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:17,031 or your builds will no longer be supported. 2025-09-08T06:44:17,031 ******************************************************************************** 2025-09-08T06:44:17,031 !! 2025-09-08T06:44:17,031 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:17,141 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:17,141 warnings.warn(msg) 2025-09-08T06:44:17,608 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.0.3dev0' to '1.0.3.dev0' 2025-09-08T06:44:17,608 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T06:44:17,610 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:17,610 !! 2025-09-08T06:44:17,611 ******************************************************************************** 2025-09-08T06:44:17,611 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:17,611 License :: OSI Approved :: MIT License 2025-09-08T06:44:17,611 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:17,611 ******************************************************************************** 2025-09-08T06:44:17,611 !! 2025-09-08T06:44:17,611 self._finalize_license_expression() 2025-09-08T06:44:17,685 running clean 2025-09-08T06:44:17,829 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:17,829 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:17,832 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T06:44:17,832 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T06:44:17,832 removing 'build' 2025-09-08T06:44:17,958 Failed to build limix-inference 2025-09-08T06:44:17,959 ERROR: Failed to build one or more wheels 2025-09-08T06:44:17,960 Exception information: 2025-09-08T06:44:17,960 Traceback (most recent call last): 2025-09-08T06:44:17,960 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:44:17,960 status = _inner_run() 2025-09-08T06:44:17,960 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:44:17,960 return self.run(options, args) 2025-09-08T06:44:17,960 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:44:17,960 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:44:17,960 return func(self, options, args) 2025-09-08T06:44:17,960 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T06:44:17,960 raise CommandError("Failed to build one or more wheels") 2025-09-08T06:44:17,960 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T06:44:17,964 Removed build tracker: '/tmp/pip-build-tracker-ahm52iff'