2025-09-08T06:44:10,642 Created temporary directory: /tmp/pip-build-tracker-j75_jjf3 2025-09-08T06:44:10,643 Initialized build tracking at /tmp/pip-build-tracker-j75_jjf3 2025-09-08T06:44:10,643 Created build tracker: /tmp/pip-build-tracker-j75_jjf3 2025-09-08T06:44:10,643 Entered build tracker: /tmp/pip-build-tracker-j75_jjf3 2025-09-08T06:44:10,644 Created temporary directory: /tmp/pip-wheel-im0qcesn 2025-09-08T06:44:10,647 Created temporary directory: /tmp/pip-ephem-wheel-cache-abyz9nyl 2025-09-08T06:44:10,702 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T06:44:10,704 2 location(s) to search for versions of limix-inference: 2025-09-08T06:44:10,704 * https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,704 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,705 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,705 Getting page 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https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T06:44:10,788 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,788 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,789 Found index url https://www.piwheels.org/simple/ 2025-09-08T06:44:10,881 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T06:44:10,883 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,883 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,883 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,884 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,884 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,884 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,884 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,884 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,884 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,884 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,885 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,914 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T06:44:10,915 Collecting limix-inference==1.0.3.dev1 2025-09-08T06:44:10,916 Created temporary directory: /tmp/pip-unpack-3akcyeqf 2025-09-08T06:44:11,053 Downloading limix-inference-1.0.3.dev1.tar.gz (25 kB) 2025-09-08T06:44:11,116 Added limix-inference==1.0.3.dev1 from https://files.pythonhosted.org/packages/61/e8/46d507060eaa4fa30615f0df8495283f90218f0555a1b3d8edd6ca6ab68c/limix-inference-1.0.3.dev1.tar.gz to build tracker '/tmp/pip-build-tracker-j75_jjf3' 2025-09-08T06:44:11,117 Running setup.py (path:/tmp/pip-wheel-im0qcesn/limix-inference_2bcf12db5d2d4f09b881d8121b9a7283/setup.py) egg_info for package limix-inference 2025-09-08T06:44:11,118 Created temporary directory: /tmp/pip-pip-egg-info-tcdnu1q_ 2025-09-08T06:44:11,118 Preparing metadata (setup.py): started 2025-09-08T06:44:11,118 Running command python setup.py egg_info 2025-09-08T06:44:12,117 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:12,118 !! 2025-09-08T06:44:12,118 ******************************************************************************** 2025-09-08T06:44:12,118 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:12,118 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:12,118 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:12,118 or your builds will no longer be supported. 2025-09-08T06:44:12,118 ******************************************************************************** 2025-09-08T06:44:12,118 !! 2025-09-08T06:44:12,119 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:12,253 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:12,253 warnings.warn(msg) 2025-09-08T06:44:12,717 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.0.3dev1' to '1.0.3.dev1' 2025-09-08T06:44:12,717 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T06:44:12,720 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:12,720 !! 2025-09-08T06:44:12,720 ******************************************************************************** 2025-09-08T06:44:12,720 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:12,720 License :: OSI Approved :: MIT License 2025-09-08T06:44:12,721 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:12,721 ******************************************************************************** 2025-09-08T06:44:12,721 !! 2025-09-08T06:44:12,721 self._finalize_license_expression() 2025-09-08T06:44:12,794 running egg_info 2025-09-08T06:44:12,867 creating /tmp/pip-pip-egg-info-tcdnu1q_/limix_inference.egg-info 2025-09-08T06:44:12,867 writing /tmp/pip-pip-egg-info-tcdnu1q_/limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:12,868 writing dependency_links to /tmp/pip-pip-egg-info-tcdnu1q_/limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:12,869 writing requirements to /tmp/pip-pip-egg-info-tcdnu1q_/limix_inference.egg-info/requires.txt 2025-09-08T06:44:12,869 writing top-level names to /tmp/pip-pip-egg-info-tcdnu1q_/limix_inference.egg-info/top_level.txt 2025-09-08T06:44:12,870 writing manifest file '/tmp/pip-pip-egg-info-tcdnu1q_/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:13,094 reading manifest file '/tmp/pip-pip-egg-info-tcdnu1q_/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:13,095 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:13,100 adding license file 'LICENSE' 2025-09-08T06:44:13,104 writing manifest file '/tmp/pip-pip-egg-info-tcdnu1q_/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:13,231 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T06:44:13,236 Source in /tmp/pip-wheel-im0qcesn/limix-inference_2bcf12db5d2d4f09b881d8121b9a7283 has version 1.0.3.dev1, which satisfies requirement limix-inference==1.0.3.dev1 from https://files.pythonhosted.org/packages/61/e8/46d507060eaa4fa30615f0df8495283f90218f0555a1b3d8edd6ca6ab68c/limix-inference-1.0.3.dev1.tar.gz 2025-09-08T06:44:13,236 Removed limix-inference==1.0.3.dev1 from https://files.pythonhosted.org/packages/61/e8/46d507060eaa4fa30615f0df8495283f90218f0555a1b3d8edd6ca6ab68c/limix-inference-1.0.3.dev1.tar.gz from build tracker '/tmp/pip-build-tracker-j75_jjf3' 2025-09-08T06:44:13,241 Created temporary directory: /tmp/pip-unpack-1jlsrzwu 2025-09-08T06:44:13,241 Created temporary directory: /tmp/pip-unpack-5m36ry73 2025-09-08T06:44:13,241 Building wheels for collected packages: limix-inference 2025-09-08T06:44:13,243 Created temporary directory: /tmp/pip-wheel-kgm8zuvk 2025-09-08T06:44:13,244 DEPRECATION: Building 'limix-inference' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'limix-inference'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T06:44:13,245 Building wheel for limix-inference (setup.py): started 2025-09-08T06:44:13,246 Destination directory: /tmp/pip-wheel-kgm8zuvk 2025-09-08T06:44:13,246 Running command python setup.py bdist_wheel 2025-09-08T06:44:14,244 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:14,244 !! 2025-09-08T06:44:14,245 ******************************************************************************** 2025-09-08T06:44:14,245 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:14,245 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:14,245 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:14,245 or your builds will no longer be supported. 2025-09-08T06:44:14,245 ******************************************************************************** 2025-09-08T06:44:14,245 !! 2025-09-08T06:44:14,245 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:14,385 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:14,385 warnings.warn(msg) 2025-09-08T06:44:14,855 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.0.3dev1' to '1.0.3.dev1' 2025-09-08T06:44:14,855 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T06:44:14,858 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:14,858 !! 2025-09-08T06:44:14,859 ******************************************************************************** 2025-09-08T06:44:14,859 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:14,859 License :: OSI Approved :: MIT License 2025-09-08T06:44:14,859 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:14,859 ******************************************************************************** 2025-09-08T06:44:14,859 !! 2025-09-08T06:44:14,859 self._finalize_license_expression() 2025-09-08T06:44:14,861 running bdist_wheel 2025-09-08T06:44:15,159 running build 2025-09-08T06:44:15,159 running build_py 2025-09-08T06:44:15,237 creating build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:15,238 copying limix_inference/fruits.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:15,238 copying limix_inference/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:15,239 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,240 copying limix_inference/mean/_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,240 copying limix_inference/mean/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,241 copying limix_inference/mean/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,241 copying limix_inference/mean/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,242 creating build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,242 copying limix_inference/lik/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,243 copying limix_inference/lik/_prod.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,243 copying limix_inference/lik/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,244 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:44:15,244 copying limix_inference/lmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:44:15,245 creating build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,245 copying limix_inference/liknorm/_machine.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,246 copying limix_inference/liknorm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,246 copying limix_inference/liknorm/_build.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,247 creating build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,247 copying limix_inference/random/_glmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,248 copying limix_inference/random/_canonical.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,248 copying limix_inference/random/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,249 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:44:15,249 copying limix_inference/glmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:44:15,250 creating build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:15,250 copying limix_inference/link/_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:15,251 copying limix_inference/link/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:15,252 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,252 copying limix_inference/cov/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,252 copying limix_inference/cov/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,253 copying limix_inference/cov/_eye.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,253 copying limix_inference/cov/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,254 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,254 copying limix_inference/lmm/_fastlmm/_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,255 copying limix_inference/lmm/_fastlmm/_core.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,255 copying limix_inference/lmm/_fastlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,256 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:15,256 copying limix_inference/lmm/_slowlmm/_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:15,257 copying limix_inference/lmm/_slowlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:15,258 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,258 copying limix_inference/glmm/_ep/_fixed.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,259 copying limix_inference/glmm/_ep/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,259 copying limix_inference/glmm/_ep/_ep.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,260 copying limix_inference/glmm/_ep/_conditioning.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,260 copying limix_inference/glmm/_ep/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,261 running egg_info 2025-09-08T06:44:15,343 writing limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:15,344 writing dependency_links to limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:15,345 writing requirements to limix_inference.egg-info/requires.txt 2025-09-08T06:44:15,345 writing top-level names to limix_inference.egg-info/top_level.txt 2025-09-08T06:44:15,427 reading manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:15,431 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:15,436 adding license file 'LICENSE' 2025-09-08T06:44:15,440 writing manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:15,442 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.cov.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,442 !! 2025-09-08T06:44:15,442 ******************************************************************************** 2025-09-08T06:44:15,442 ############################ 2025-09-08T06:44:15,442 # Package would be ignored # 2025-09-08T06:44:15,442 ############################ 2025-09-08T06:44:15,443 Python recognizes 'limix_inference.cov.test' as an importable package[^1], 2025-09-08T06:44:15,443 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,443 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,443 package, please make sure that 'limix_inference.cov.test' is explicitly added 2025-09-08T06:44:15,443 to the `packages` configuration field. 2025-09-08T06:44:15,443 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,443 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,444 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,444 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,444 If you don't want 'limix_inference.cov.test' to be distributed and are 2025-09-08T06:44:15,444 already explicitly excluding 'limix_inference.cov.test' via 2025-09-08T06:44:15,444 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,444 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,444 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,444 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,445 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,445 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,445 even if it does not contain any `.py` files. 2025-09-08T06:44:15,445 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,445 directory, all directories are treated like packages. 2025-09-08T06:44:15,445 ******************************************************************************** 2025-09-08T06:44:15,445 !! 2025-09-08T06:44:15,445 check.warn(importable) 2025-09-08T06:44:15,446 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.glmm._ep.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,446 !! 2025-09-08T06:44:15,446 ******************************************************************************** 2025-09-08T06:44:15,446 ############################ 2025-09-08T06:44:15,446 # Package would be ignored # 2025-09-08T06:44:15,446 ############################ 2025-09-08T06:44:15,446 Python recognizes 'limix_inference.glmm._ep.test' as an importable package[^1], 2025-09-08T06:44:15,446 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,447 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,447 package, please make sure that 'limix_inference.glmm._ep.test' is explicitly added 2025-09-08T06:44:15,447 to the `packages` configuration field. 2025-09-08T06:44:15,447 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,447 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,447 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,447 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,447 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,448 If you don't want 'limix_inference.glmm._ep.test' to be distributed and are 2025-09-08T06:44:15,448 already explicitly excluding 'limix_inference.glmm._ep.test' via 2025-09-08T06:44:15,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,448 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,448 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,448 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,448 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,449 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,449 even if it does not contain any `.py` files. 2025-09-08T06:44:15,449 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,449 directory, all directories are treated like packages. 2025-09-08T06:44:15,449 ******************************************************************************** 2025-09-08T06:44:15,449 !! 2025-09-08T06:44:15,449 check.warn(importable) 2025-09-08T06:44:15,449 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.link.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,449 !! 2025-09-08T06:44:15,450 ******************************************************************************** 2025-09-08T06:44:15,450 ############################ 2025-09-08T06:44:15,450 # Package would be ignored # 2025-09-08T06:44:15,450 ############################ 2025-09-08T06:44:15,450 Python recognizes 'limix_inference.link.test' as an importable package[^1], 2025-09-08T06:44:15,450 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,450 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,450 package, please make sure that 'limix_inference.link.test' is explicitly added 2025-09-08T06:44:15,450 to the `packages` configuration field. 2025-09-08T06:44:15,451 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,451 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,451 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,451 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,451 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,451 If you don't want 'limix_inference.link.test' to be distributed and are 2025-09-08T06:44:15,451 already explicitly excluding 'limix_inference.link.test' via 2025-09-08T06:44:15,451 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,452 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,452 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,452 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,452 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,452 even if it does not contain any `.py` files. 2025-09-08T06:44:15,452 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,453 directory, all directories are treated like packages. 2025-09-08T06:44:15,453 ******************************************************************************** 2025-09-08T06:44:15,453 !! 2025-09-08T06:44:15,453 check.warn(importable) 2025-09-08T06:44:15,453 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._fastlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,453 !! 2025-09-08T06:44:15,453 ******************************************************************************** 2025-09-08T06:44:15,453 ############################ 2025-09-08T06:44:15,453 # Package would be ignored # 2025-09-08T06:44:15,454 ############################ 2025-09-08T06:44:15,454 Python recognizes 'limix_inference.lmm._fastlmm.test' as an importable package[^1], 2025-09-08T06:44:15,454 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,454 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,454 package, please make sure that 'limix_inference.lmm._fastlmm.test' is explicitly added 2025-09-08T06:44:15,454 to the `packages` configuration field. 2025-09-08T06:44:15,454 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,454 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,454 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,455 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,455 If you don't want 'limix_inference.lmm._fastlmm.test' to be distributed and are 2025-09-08T06:44:15,455 already explicitly excluding 'limix_inference.lmm._fastlmm.test' via 2025-09-08T06:44:15,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,455 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,455 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,456 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,456 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,456 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,456 even if it does not contain any `.py` files. 2025-09-08T06:44:15,456 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,456 directory, all directories are treated like packages. 2025-09-08T06:44:15,456 ******************************************************************************** 2025-09-08T06:44:15,456 !! 2025-09-08T06:44:15,457 check.warn(importable) 2025-09-08T06:44:15,457 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._slowlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,457 !! 2025-09-08T06:44:15,457 ******************************************************************************** 2025-09-08T06:44:15,457 ############################ 2025-09-08T06:44:15,457 # Package would be ignored # 2025-09-08T06:44:15,457 ############################ 2025-09-08T06:44:15,457 Python recognizes 'limix_inference.lmm._slowlmm.test' as an importable package[^1], 2025-09-08T06:44:15,457 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,458 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,458 package, please make sure that 'limix_inference.lmm._slowlmm.test' is explicitly added 2025-09-08T06:44:15,458 to the `packages` configuration field. 2025-09-08T06:44:15,458 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,458 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,458 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,458 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,458 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,459 If you don't want 'limix_inference.lmm._slowlmm.test' to be distributed and are 2025-09-08T06:44:15,459 already explicitly excluding 'limix_inference.lmm._slowlmm.test' via 2025-09-08T06:44:15,459 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,459 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,459 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,459 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,459 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,460 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,460 even if it does not contain any `.py` files. 2025-09-08T06:44:15,460 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,460 directory, all directories are treated like packages. 2025-09-08T06:44:15,460 ******************************************************************************** 2025-09-08T06:44:15,460 !! 2025-09-08T06:44:15,460 check.warn(importable) 2025-09-08T06:44:15,460 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.mean.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,460 !! 2025-09-08T06:44:15,461 ******************************************************************************** 2025-09-08T06:44:15,461 ############################ 2025-09-08T06:44:15,461 # Package would be ignored # 2025-09-08T06:44:15,461 ############################ 2025-09-08T06:44:15,461 Python recognizes 'limix_inference.mean.test' as an importable package[^1], 2025-09-08T06:44:15,461 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,461 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,461 package, please make sure that 'limix_inference.mean.test' is explicitly added 2025-09-08T06:44:15,461 to the `packages` configuration field. 2025-09-08T06:44:15,462 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,462 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,462 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,462 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,462 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,462 If you don't want 'limix_inference.mean.test' to be distributed and are 2025-09-08T06:44:15,462 already explicitly excluding 'limix_inference.mean.test' via 2025-09-08T06:44:15,462 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,462 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,463 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,463 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,463 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,463 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,463 even if it does not contain any `.py` files. 2025-09-08T06:44:15,463 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,463 directory, all directories are treated like packages. 2025-09-08T06:44:15,464 ******************************************************************************** 2025-09-08T06:44:15,464 !! 2025-09-08T06:44:15,464 check.warn(importable) 2025-09-08T06:44:15,464 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.random.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,464 !! 2025-09-08T06:44:15,464 ******************************************************************************** 2025-09-08T06:44:15,464 ############################ 2025-09-08T06:44:15,464 # Package would be ignored # 2025-09-08T06:44:15,464 ############################ 2025-09-08T06:44:15,464 Python recognizes 'limix_inference.random.test' as an importable package[^1], 2025-09-08T06:44:15,465 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,465 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,465 package, please make sure that 'limix_inference.random.test' is explicitly added 2025-09-08T06:44:15,465 to the `packages` configuration field. 2025-09-08T06:44:15,465 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,465 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,465 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,465 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,466 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,466 If you don't want 'limix_inference.random.test' to be distributed and are 2025-09-08T06:44:15,466 already explicitly excluding 'limix_inference.random.test' via 2025-09-08T06:44:15,466 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,466 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,466 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,466 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,466 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,467 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,467 even if it does not contain any `.py` files. 2025-09-08T06:44:15,467 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,467 directory, all directories are treated like packages. 2025-09-08T06:44:15,467 ******************************************************************************** 2025-09-08T06:44:15,467 !! 2025-09-08T06:44:15,467 check.warn(importable) 2025-09-08T06:44:15,467 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,468 !! 2025-09-08T06:44:15,468 ******************************************************************************** 2025-09-08T06:44:15,468 ############################ 2025-09-08T06:44:15,468 # Package would be ignored # 2025-09-08T06:44:15,468 ############################ 2025-09-08T06:44:15,468 Python recognizes 'limix_inference.test' as an importable package[^1], 2025-09-08T06:44:15,468 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,468 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,468 package, please make sure that 'limix_inference.test' is explicitly added 2025-09-08T06:44:15,468 to the `packages` configuration field. 2025-09-08T06:44:15,469 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,469 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,469 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,469 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,469 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,469 If you don't want 'limix_inference.test' to be distributed and are 2025-09-08T06:44:15,470 already explicitly excluding 'limix_inference.test' via 2025-09-08T06:44:15,470 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,470 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,470 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,470 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,470 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,470 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,470 even if it does not contain any `.py` files. 2025-09-08T06:44:15,471 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,471 directory, all directories are treated like packages. 2025-09-08T06:44:15,471 ******************************************************************************** 2025-09-08T06:44:15,471 !! 2025-09-08T06:44:15,471 check.warn(importable) 2025-09-08T06:44:15,471 creating build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:15,471 copying limix_inference/test/test_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:15,471 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:15,471 copying limix_inference/mean/test/test_linear_mean.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:15,471 copying limix_inference/mean/test/test_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:15,472 creating build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:15,472 copying limix_inference/random/test/test_sampling.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:15,472 creating build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:15,472 copying limix_inference/link/test/test_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:15,472 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,472 copying limix_inference/cov/test/test_eye_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,472 copying limix_inference/cov/test/test_linear_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,472 copying limix_inference/cov/test/test_sum_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,472 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:44:15,472 copying limix_inference/lmm/_fastlmm/test/test_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:44:15,472 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:44:15,473 copying limix_inference/lmm/_slowlmm/test/test_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:44:15,473 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,473 copying limix_inference/glmm/_ep/test/test_bernoulli.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,473 copying limix_inference/glmm/_ep/test/test_binomial.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,473 copying limix_inference/glmm/_ep/test/test_poisson.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,473 running build_ext 2025-09-08T06:44:15,473 generating cffi module 'build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c' 2025-09-08T06:44:15,473 creating build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:15,812 building 'limix_inference.liknorm._ffi' extension 2025-09-08T06:44:15,813 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:15,813 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.o 2025-09-08T06:44:16,082 build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c:574:14: fatal error: liknorm/liknorm.h: No such file or directory 2025-09-08T06:44:16,083 574 | #include "liknorm/liknorm.h" 2025-09-08T06:44:16,083 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T06:44:16,083 compilation terminated. 2025-09-08T06:44:16,086 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T06:44:16,247 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T06:44:16,259 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T06:44:16,259 exec(compile('"'"''"'"''"'"' 2025-09-08T06:44:16,259 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:44:16,259 # 2025-09-08T06:44:16,259 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:44:16,259 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:44:16,259 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:44:16,259 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:44:16,259 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:44:16,259 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:44:16,259 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:44:16,259 import os, sys, tokenize, traceback 2025-09-08T06:44:16,259 2025-09-08T06:44:16,259 try: 2025-09-08T06:44:16,259 import setuptools 2025-09-08T06:44:16,259 except ImportError: 2025-09-08T06:44:16,259 print( 2025-09-08T06:44:16,259 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:44:16,259 "the build environment with exception:", 2025-09-08T06:44:16,259 file=sys.stderr, 2025-09-08T06:44:16,259 ) 2025-09-08T06:44:16,259 traceback.print_exc() 2025-09-08T06:44:16,259 sys.exit(1) 2025-09-08T06:44:16,259 2025-09-08T06:44:16,259 __file__ = %r 2025-09-08T06:44:16,259 sys.argv[0] = __file__ 2025-09-08T06:44:16,259 2025-09-08T06:44:16,259 if os.path.exists(__file__): 2025-09-08T06:44:16,259 filename = __file__ 2025-09-08T06:44:16,259 with tokenize.open(__file__) as f: 2025-09-08T06:44:16,259 setup_py_code = f.read() 2025-09-08T06:44:16,259 else: 2025-09-08T06:44:16,259 filename = "" 2025-09-08T06:44:16,259 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:44:16,259 2025-09-08T06:44:16,259 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:44:16,259 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-im0qcesn/limix-inference_2bcf12db5d2d4f09b881d8121b9a7283/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-kgm8zuvk[/] 2025-09-08T06:44:16,259 [bold magenta]cwd[/]: /tmp/pip-wheel-im0qcesn/limix-inference_2bcf12db5d2d4f09b881d8121b9a7283/ 2025-09-08T06:44:16,259 Building wheel for limix-inference (setup.py): finished with status 'error' 2025-09-08T06:44:16,260 ERROR: Failed building wheel for limix-inference 2025-09-08T06:44:16,261 Running setup.py clean for limix-inference 2025-09-08T06:44:16,261 Running command python setup.py clean 2025-09-08T06:44:17,244 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:17,244 !! 2025-09-08T06:44:17,244 ******************************************************************************** 2025-09-08T06:44:17,244 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:17,245 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:17,245 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:17,245 or your builds will no longer be supported. 2025-09-08T06:44:17,245 ******************************************************************************** 2025-09-08T06:44:17,245 !! 2025-09-08T06:44:17,245 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:17,386 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:17,386 warnings.warn(msg) 2025-09-08T06:44:17,870 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.0.3dev1' to '1.0.3.dev1' 2025-09-08T06:44:17,870 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T06:44:17,873 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:17,873 !! 2025-09-08T06:44:17,873 ******************************************************************************** 2025-09-08T06:44:17,873 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:17,873 License :: OSI Approved :: MIT License 2025-09-08T06:44:17,874 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:17,874 ******************************************************************************** 2025-09-08T06:44:17,874 !! 2025-09-08T06:44:17,874 self._finalize_license_expression() 2025-09-08T06:44:17,950 running clean 2025-09-08T06:44:18,097 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:18,098 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:18,100 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T06:44:18,101 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T06:44:18,101 removing 'build' 2025-09-08T06:44:18,226 Failed to build limix-inference 2025-09-08T06:44:18,227 ERROR: Failed to build one or more wheels 2025-09-08T06:44:18,228 Exception information: 2025-09-08T06:44:18,228 Traceback (most recent call last): 2025-09-08T06:44:18,228 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:44:18,228 status = _inner_run() 2025-09-08T06:44:18,228 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:44:18,228 return self.run(options, args) 2025-09-08T06:44:18,228 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:44:18,228 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:44:18,228 return func(self, options, args) 2025-09-08T06:44:18,228 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T06:44:18,228 raise CommandError("Failed to build one or more wheels") 2025-09-08T06:44:18,228 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T06:44:18,232 Removed build tracker: '/tmp/pip-build-tracker-j75_jjf3'