2025-09-08T06:44:10,479 Created temporary directory: /tmp/pip-build-tracker-ryifmvil 2025-09-08T06:44:10,480 Initialized build tracking at /tmp/pip-build-tracker-ryifmvil 2025-09-08T06:44:10,480 Created build tracker: /tmp/pip-build-tracker-ryifmvil 2025-09-08T06:44:10,480 Entered build tracker: /tmp/pip-build-tracker-ryifmvil 2025-09-08T06:44:10,481 Created temporary directory: /tmp/pip-wheel-poti368k 2025-09-08T06:44:10,484 Created temporary directory: /tmp/pip-ephem-wheel-cache-nhvw5u49 2025-09-08T06:44:10,545 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T06:44:10,548 2 location(s) to search for versions of limix-inference: 2025-09-08T06:44:10,548 * https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,548 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,548 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,549 Getting page 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https://files.pythonhosted.org/packages/b8/e8/c54d52bdcd945b9a4c71fbbcf03797d190000ce37126c9f9ae3d46619dcf/limix-inference-1.1.2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.2 2025-09-08T06:44:10,633 Found link https://files.pythonhosted.org/packages/7e/09/2c88d1b16d0cde089f51eb54790c7ce0cdf5afc57592b7b55e8222203ce0/limix-inference-1.1.3.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.3 2025-09-08T06:44:10,633 Found link https://files.pythonhosted.org/packages/cf/21/4f4f8caaf4ebef6d5948528c8a0dcf5863ab819faf97123797c57fe2c675/limix-inference-1.1.4.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.4 2025-09-08T06:44:10,634 Found link https://files.pythonhosted.org/packages/e8/cd/0dddf22fb999f514e9d2f6a4a95a5ebe4fbf677fae4c3136d14d258ce1c8/limix-inference-1.1.5.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.5 2025-09-08T06:44:10,634 Found link https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T06:44:10,634 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,634 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,635 Found index url https://www.piwheels.org/simple/ 2025-09-08T06:44:10,721 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T06:44:10,724 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,725 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,725 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,725 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,725 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,725 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,725 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,726 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,726 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:10,726 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,726 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,756 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T06:44:10,757 Collecting limix-inference==1.0.2 2025-09-08T06:44:10,758 Created temporary directory: /tmp/pip-unpack-80ehe34r 2025-09-08T06:44:10,895 Downloading limix-inference-1.0.2.tar.gz (25 kB) 2025-09-08T06:44:10,956 Added limix-inference==1.0.2 from https://files.pythonhosted.org/packages/0b/8a/750cfdae71af53c974ae61078f584520fb3d2a042ed57017278480cdd787/limix-inference-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-ryifmvil' 2025-09-08T06:44:10,957 Running setup.py (path:/tmp/pip-wheel-poti368k/limix-inference_fa19b3afd250425da3c75efd26749f9c/setup.py) egg_info for package limix-inference 2025-09-08T06:44:10,957 Created temporary directory: /tmp/pip-pip-egg-info-5idws3sg 2025-09-08T06:44:10,958 Preparing metadata (setup.py): started 2025-09-08T06:44:10,958 Running command python setup.py egg_info 2025-09-08T06:44:11,974 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:11,974 !! 2025-09-08T06:44:11,974 ******************************************************************************** 2025-09-08T06:44:11,974 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:11,974 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:11,975 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:11,975 or your builds will no longer be supported. 2025-09-08T06:44:11,975 ******************************************************************************** 2025-09-08T06:44:11,975 !! 2025-09-08T06:44:11,975 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:12,192 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:12,192 warnings.warn(msg) 2025-09-08T06:44:12,661 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:12,661 !! 2025-09-08T06:44:12,661 ******************************************************************************** 2025-09-08T06:44:12,661 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:12,662 License :: OSI Approved :: MIT License 2025-09-08T06:44:12,662 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:12,662 ******************************************************************************** 2025-09-08T06:44:12,662 !! 2025-09-08T06:44:12,662 self._finalize_license_expression() 2025-09-08T06:44:12,735 running egg_info 2025-09-08T06:44:12,808 creating /tmp/pip-pip-egg-info-5idws3sg/limix_inference.egg-info 2025-09-08T06:44:12,809 writing /tmp/pip-pip-egg-info-5idws3sg/limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:12,810 writing dependency_links to /tmp/pip-pip-egg-info-5idws3sg/limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:12,811 writing requirements to /tmp/pip-pip-egg-info-5idws3sg/limix_inference.egg-info/requires.txt 2025-09-08T06:44:12,811 writing top-level names to /tmp/pip-pip-egg-info-5idws3sg/limix_inference.egg-info/top_level.txt 2025-09-08T06:44:12,811 writing manifest file '/tmp/pip-pip-egg-info-5idws3sg/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:13,038 reading manifest file '/tmp/pip-pip-egg-info-5idws3sg/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:13,039 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:13,044 adding license file 'LICENSE' 2025-09-08T06:44:13,048 writing manifest file '/tmp/pip-pip-egg-info-5idws3sg/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:13,174 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T06:44:13,179 Source in /tmp/pip-wheel-poti368k/limix-inference_fa19b3afd250425da3c75efd26749f9c has version 1.0.2, which satisfies requirement limix-inference==1.0.2 from https://files.pythonhosted.org/packages/0b/8a/750cfdae71af53c974ae61078f584520fb3d2a042ed57017278480cdd787/limix-inference-1.0.2.tar.gz 2025-09-08T06:44:13,179 Removed limix-inference==1.0.2 from https://files.pythonhosted.org/packages/0b/8a/750cfdae71af53c974ae61078f584520fb3d2a042ed57017278480cdd787/limix-inference-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-ryifmvil' 2025-09-08T06:44:13,184 Created temporary directory: /tmp/pip-unpack-38t5rbzp 2025-09-08T06:44:13,184 Created temporary directory: /tmp/pip-unpack-8piusmt0 2025-09-08T06:44:13,184 Building wheels for collected packages: limix-inference 2025-09-08T06:44:13,185 Created temporary directory: /tmp/pip-wheel-4redfyx3 2025-09-08T06:44:13,186 DEPRECATION: Building 'limix-inference' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'limix-inference'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T06:44:13,187 Building wheel for limix-inference (setup.py): started 2025-09-08T06:44:13,188 Destination directory: /tmp/pip-wheel-4redfyx3 2025-09-08T06:44:13,188 Running command python setup.py bdist_wheel 2025-09-08T06:44:14,196 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:14,196 !! 2025-09-08T06:44:14,197 ******************************************************************************** 2025-09-08T06:44:14,197 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:14,197 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:14,197 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:14,197 or your builds will no longer be supported. 2025-09-08T06:44:14,197 ******************************************************************************** 2025-09-08T06:44:14,198 !! 2025-09-08T06:44:14,198 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:14,418 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:14,418 warnings.warn(msg) 2025-09-08T06:44:14,896 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:14,896 !! 2025-09-08T06:44:14,896 ******************************************************************************** 2025-09-08T06:44:14,896 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:14,897 License :: OSI Approved :: MIT License 2025-09-08T06:44:14,897 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:14,897 ******************************************************************************** 2025-09-08T06:44:14,897 !! 2025-09-08T06:44:14,897 self._finalize_license_expression() 2025-09-08T06:44:14,898 running bdist_wheel 2025-09-08T06:44:15,194 running build 2025-09-08T06:44:15,194 running build_py 2025-09-08T06:44:15,272 creating build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:15,272 copying limix_inference/fruits.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:15,273 copying limix_inference/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:15,274 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,274 copying limix_inference/mean/_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,274 copying limix_inference/mean/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,275 copying limix_inference/mean/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,275 copying limix_inference/mean/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:15,276 creating build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,276 copying limix_inference/lik/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,277 copying limix_inference/lik/_prod.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,277 copying limix_inference/lik/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:15,278 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:44:15,278 copying limix_inference/lmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:44:15,279 creating build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,279 copying limix_inference/liknorm/_machine.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,280 copying limix_inference/liknorm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,280 copying limix_inference/liknorm/_build.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:15,281 creating build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,281 copying limix_inference/random/_glmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,282 copying limix_inference/random/_canonical.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,282 copying limix_inference/random/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:15,283 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:44:15,283 copying limix_inference/glmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:44:15,284 creating build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:15,284 copying limix_inference/link/_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:15,285 copying limix_inference/link/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:15,286 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,286 copying limix_inference/cov/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,286 copying limix_inference/cov/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,287 copying limix_inference/cov/_eye.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,288 copying limix_inference/cov/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:15,288 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,289 copying limix_inference/lmm/_fastlmm/_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,289 copying limix_inference/lmm/_fastlmm/_core.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,290 copying limix_inference/lmm/_fastlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:15,290 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:15,291 copying limix_inference/lmm/_slowlmm/_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:15,291 copying limix_inference/lmm/_slowlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:15,292 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,292 copying limix_inference/glmm/_ep/_fixed.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,293 copying limix_inference/glmm/_ep/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,293 copying limix_inference/glmm/_ep/_ep.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,294 copying limix_inference/glmm/_ep/_conditioning.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,294 copying limix_inference/glmm/_ep/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:15,295 running egg_info 2025-09-08T06:44:15,377 writing limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:15,378 writing dependency_links to limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:15,379 writing requirements to limix_inference.egg-info/requires.txt 2025-09-08T06:44:15,379 writing top-level names to limix_inference.egg-info/top_level.txt 2025-09-08T06:44:15,461 reading manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:15,464 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:15,469 adding license file 'LICENSE' 2025-09-08T06:44:15,474 writing manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:15,475 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.cov.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,475 !! 2025-09-08T06:44:15,476 ******************************************************************************** 2025-09-08T06:44:15,476 ############################ 2025-09-08T06:44:15,476 # Package would be ignored # 2025-09-08T06:44:15,476 ############################ 2025-09-08T06:44:15,476 Python recognizes 'limix_inference.cov.test' as an importable package[^1], 2025-09-08T06:44:15,476 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,476 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,476 package, please make sure that 'limix_inference.cov.test' is explicitly added 2025-09-08T06:44:15,476 to the `packages` configuration field. 2025-09-08T06:44:15,477 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,477 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,477 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,477 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,477 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,477 If you don't want 'limix_inference.cov.test' to be distributed and are 2025-09-08T06:44:15,477 already explicitly excluding 'limix_inference.cov.test' via 2025-09-08T06:44:15,478 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,478 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,478 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,478 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,478 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,478 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,478 even if it does not contain any `.py` files. 2025-09-08T06:44:15,479 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,479 directory, all directories are treated like packages. 2025-09-08T06:44:15,479 ******************************************************************************** 2025-09-08T06:44:15,479 !! 2025-09-08T06:44:15,479 check.warn(importable) 2025-09-08T06:44:15,479 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.glmm._ep.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,479 !! 2025-09-08T06:44:15,479 ******************************************************************************** 2025-09-08T06:44:15,480 ############################ 2025-09-08T06:44:15,480 # Package would be ignored # 2025-09-08T06:44:15,480 ############################ 2025-09-08T06:44:15,480 Python recognizes 'limix_inference.glmm._ep.test' as an importable package[^1], 2025-09-08T06:44:15,480 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,480 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,480 package, please make sure that 'limix_inference.glmm._ep.test' is explicitly added 2025-09-08T06:44:15,480 to the `packages` configuration field. 2025-09-08T06:44:15,480 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,480 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,481 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,481 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,481 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,481 If you don't want 'limix_inference.glmm._ep.test' to be distributed and are 2025-09-08T06:44:15,481 already explicitly excluding 'limix_inference.glmm._ep.test' via 2025-09-08T06:44:15,481 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,481 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,481 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,482 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,482 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,482 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,482 even if it does not contain any `.py` files. 2025-09-08T06:44:15,482 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,482 directory, all directories are treated like packages. 2025-09-08T06:44:15,482 ******************************************************************************** 2025-09-08T06:44:15,483 !! 2025-09-08T06:44:15,483 check.warn(importable) 2025-09-08T06:44:15,483 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.link.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,483 !! 2025-09-08T06:44:15,483 ******************************************************************************** 2025-09-08T06:44:15,483 ############################ 2025-09-08T06:44:15,483 # Package would be ignored # 2025-09-08T06:44:15,483 ############################ 2025-09-08T06:44:15,483 Python recognizes 'limix_inference.link.test' as an importable package[^1], 2025-09-08T06:44:15,483 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,484 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,484 package, please make sure that 'limix_inference.link.test' is explicitly added 2025-09-08T06:44:15,484 to the `packages` configuration field. 2025-09-08T06:44:15,484 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,484 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,484 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,484 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,485 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,485 If you don't want 'limix_inference.link.test' to be distributed and are 2025-09-08T06:44:15,485 already explicitly excluding 'limix_inference.link.test' via 2025-09-08T06:44:15,485 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,485 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,485 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,485 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,485 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,486 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,486 even if it does not contain any `.py` files. 2025-09-08T06:44:15,486 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,486 directory, all directories are treated like packages. 2025-09-08T06:44:15,486 ******************************************************************************** 2025-09-08T06:44:15,486 !! 2025-09-08T06:44:15,486 check.warn(importable) 2025-09-08T06:44:15,486 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._fastlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,486 !! 2025-09-08T06:44:15,487 ******************************************************************************** 2025-09-08T06:44:15,487 ############################ 2025-09-08T06:44:15,487 # Package would be ignored # 2025-09-08T06:44:15,487 ############################ 2025-09-08T06:44:15,487 Python recognizes 'limix_inference.lmm._fastlmm.test' as an importable package[^1], 2025-09-08T06:44:15,487 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,487 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,487 package, please make sure that 'limix_inference.lmm._fastlmm.test' is explicitly added 2025-09-08T06:44:15,487 to the `packages` configuration field. 2025-09-08T06:44:15,488 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,488 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,488 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,488 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,488 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,488 If you don't want 'limix_inference.lmm._fastlmm.test' to be distributed and are 2025-09-08T06:44:15,488 already explicitly excluding 'limix_inference.lmm._fastlmm.test' via 2025-09-08T06:44:15,489 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,489 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,489 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,489 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,489 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,489 even if it does not contain any `.py` files. 2025-09-08T06:44:15,490 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,490 directory, all directories are treated like packages. 2025-09-08T06:44:15,490 ******************************************************************************** 2025-09-08T06:44:15,490 !! 2025-09-08T06:44:15,490 check.warn(importable) 2025-09-08T06:44:15,490 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._slowlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,490 !! 2025-09-08T06:44:15,490 ******************************************************************************** 2025-09-08T06:44:15,490 ############################ 2025-09-08T06:44:15,490 # Package would be ignored # 2025-09-08T06:44:15,491 ############################ 2025-09-08T06:44:15,491 Python recognizes 'limix_inference.lmm._slowlmm.test' as an importable package[^1], 2025-09-08T06:44:15,491 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,491 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,491 package, please make sure that 'limix_inference.lmm._slowlmm.test' is explicitly added 2025-09-08T06:44:15,491 to the `packages` configuration field. 2025-09-08T06:44:15,491 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,491 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,491 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,492 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,492 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,492 If you don't want 'limix_inference.lmm._slowlmm.test' to be distributed and are 2025-09-08T06:44:15,492 already explicitly excluding 'limix_inference.lmm._slowlmm.test' via 2025-09-08T06:44:15,492 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,492 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,492 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,492 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,493 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,493 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,493 even if it does not contain any `.py` files. 2025-09-08T06:44:15,493 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,493 directory, all directories are treated like packages. 2025-09-08T06:44:15,493 ******************************************************************************** 2025-09-08T06:44:15,493 !! 2025-09-08T06:44:15,494 check.warn(importable) 2025-09-08T06:44:15,494 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.mean.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,494 !! 2025-09-08T06:44:15,494 ******************************************************************************** 2025-09-08T06:44:15,494 ############################ 2025-09-08T06:44:15,494 # Package would be ignored # 2025-09-08T06:44:15,494 ############################ 2025-09-08T06:44:15,494 Python recognizes 'limix_inference.mean.test' as an importable package[^1], 2025-09-08T06:44:15,494 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,494 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,495 package, please make sure that 'limix_inference.mean.test' is explicitly added 2025-09-08T06:44:15,495 to the `packages` configuration field. 2025-09-08T06:44:15,495 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,495 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,495 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,495 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,495 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,495 If you don't want 'limix_inference.mean.test' to be distributed and are 2025-09-08T06:44:15,496 already explicitly excluding 'limix_inference.mean.test' via 2025-09-08T06:44:15,496 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,496 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,496 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,496 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,496 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,497 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,497 even if it does not contain any `.py` files. 2025-09-08T06:44:15,497 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,497 directory, all directories are treated like packages. 2025-09-08T06:44:15,497 ******************************************************************************** 2025-09-08T06:44:15,497 !! 2025-09-08T06:44:15,497 check.warn(importable) 2025-09-08T06:44:15,497 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.random.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,497 !! 2025-09-08T06:44:15,498 ******************************************************************************** 2025-09-08T06:44:15,498 ############################ 2025-09-08T06:44:15,498 # Package would be ignored # 2025-09-08T06:44:15,498 ############################ 2025-09-08T06:44:15,498 Python recognizes 'limix_inference.random.test' as an importable package[^1], 2025-09-08T06:44:15,498 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,498 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,498 package, please make sure that 'limix_inference.random.test' is explicitly added 2025-09-08T06:44:15,498 to the `packages` configuration field. 2025-09-08T06:44:15,498 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,499 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,499 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,499 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,499 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,499 If you don't want 'limix_inference.random.test' to be distributed and are 2025-09-08T06:44:15,499 already explicitly excluding 'limix_inference.random.test' via 2025-09-08T06:44:15,499 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,500 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,500 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,500 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,500 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,500 even if it does not contain any `.py` files. 2025-09-08T06:44:15,500 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,501 directory, all directories are treated like packages. 2025-09-08T06:44:15,501 ******************************************************************************** 2025-09-08T06:44:15,501 !! 2025-09-08T06:44:15,501 check.warn(importable) 2025-09-08T06:44:15,501 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.test' is absent from the `packages` configuration. 2025-09-08T06:44:15,501 !! 2025-09-08T06:44:15,501 ******************************************************************************** 2025-09-08T06:44:15,501 ############################ 2025-09-08T06:44:15,501 # Package would be ignored # 2025-09-08T06:44:15,502 ############################ 2025-09-08T06:44:15,502 Python recognizes 'limix_inference.test' as an importable package[^1], 2025-09-08T06:44:15,502 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:15,502 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:15,502 package, please make sure that 'limix_inference.test' is explicitly added 2025-09-08T06:44:15,502 to the `packages` configuration field. 2025-09-08T06:44:15,502 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:15,502 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:15,502 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:15,503 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:15,503 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:15,503 If you don't want 'limix_inference.test' to be distributed and are 2025-09-08T06:44:15,503 already explicitly excluding 'limix_inference.test' via 2025-09-08T06:44:15,503 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:15,503 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:15,503 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:15,504 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:15,504 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:15,504 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:15,504 even if it does not contain any `.py` files. 2025-09-08T06:44:15,504 On the other hand, currently there is no concept of package data 2025-09-08T06:44:15,504 directory, all directories are treated like packages. 2025-09-08T06:44:15,504 ******************************************************************************** 2025-09-08T06:44:15,505 !! 2025-09-08T06:44:15,505 check.warn(importable) 2025-09-08T06:44:15,505 creating build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:15,505 copying limix_inference/test/test_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:15,505 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:15,505 copying limix_inference/mean/test/test_linear_mean.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:15,505 copying limix_inference/mean/test/test_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:15,505 creating build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:15,505 copying limix_inference/random/test/test_sampling.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:15,505 creating build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:15,506 copying limix_inference/link/test/test_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:15,506 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,506 copying limix_inference/cov/test/test_eye_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,506 copying limix_inference/cov/test/test_linear_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,506 copying limix_inference/cov/test/test_sum_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:15,506 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:44:15,506 copying limix_inference/lmm/_fastlmm/test/test_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:44:15,506 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:44:15,506 copying limix_inference/lmm/_slowlmm/test/test_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:44:15,507 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,507 copying limix_inference/glmm/_ep/test/test_bernoulli.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,507 copying limix_inference/glmm/_ep/test/test_binomial.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,507 copying limix_inference/glmm/_ep/test/test_poisson.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:15,507 running build_ext 2025-09-08T06:44:15,507 generating cffi module 'build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c' 2025-09-08T06:44:15,507 creating build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:15,820 building 'limix_inference.liknorm._ffi' extension 2025-09-08T06:44:15,820 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:15,821 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.o 2025-09-08T06:44:16,088 build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c:574:14: fatal error: liknorm/liknorm.h: No such file or directory 2025-09-08T06:44:16,088 574 | #include "liknorm/liknorm.h" 2025-09-08T06:44:16,088 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T06:44:16,089 compilation terminated. 2025-09-08T06:44:16,092 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T06:44:16,254 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T06:44:16,265 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T06:44:16,265 exec(compile('"'"''"'"''"'"' 2025-09-08T06:44:16,265 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:44:16,265 # 2025-09-08T06:44:16,265 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:44:16,265 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:44:16,265 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:44:16,265 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:44:16,265 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:44:16,265 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:44:16,265 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:44:16,265 import os, sys, tokenize, traceback 2025-09-08T06:44:16,265 2025-09-08T06:44:16,265 try: 2025-09-08T06:44:16,265 import setuptools 2025-09-08T06:44:16,265 except ImportError: 2025-09-08T06:44:16,265 print( 2025-09-08T06:44:16,265 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:44:16,265 "the build environment with exception:", 2025-09-08T06:44:16,265 file=sys.stderr, 2025-09-08T06:44:16,265 ) 2025-09-08T06:44:16,265 traceback.print_exc() 2025-09-08T06:44:16,265 sys.exit(1) 2025-09-08T06:44:16,265 2025-09-08T06:44:16,265 __file__ = %r 2025-09-08T06:44:16,265 sys.argv[0] = __file__ 2025-09-08T06:44:16,265 2025-09-08T06:44:16,265 if os.path.exists(__file__): 2025-09-08T06:44:16,265 filename = __file__ 2025-09-08T06:44:16,265 with tokenize.open(__file__) as f: 2025-09-08T06:44:16,265 setup_py_code = f.read() 2025-09-08T06:44:16,265 else: 2025-09-08T06:44:16,265 filename = "" 2025-09-08T06:44:16,265 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:44:16,265 2025-09-08T06:44:16,265 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:44:16,265 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-poti368k/limix-inference_fa19b3afd250425da3c75efd26749f9c/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-4redfyx3[/] 2025-09-08T06:44:16,266 [bold magenta]cwd[/]: /tmp/pip-wheel-poti368k/limix-inference_fa19b3afd250425da3c75efd26749f9c/ 2025-09-08T06:44:16,266 Building wheel for limix-inference (setup.py): finished with status 'error' 2025-09-08T06:44:16,266 ERROR: Failed building wheel for limix-inference 2025-09-08T06:44:16,267 Running setup.py clean for limix-inference 2025-09-08T06:44:16,268 Running command python setup.py clean 2025-09-08T06:44:17,258 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:17,259 !! 2025-09-08T06:44:17,259 ******************************************************************************** 2025-09-08T06:44:17,259 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:17,259 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:17,259 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:17,259 or your builds will no longer be supported. 2025-09-08T06:44:17,260 ******************************************************************************** 2025-09-08T06:44:17,260 !! 2025-09-08T06:44:17,260 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:17,489 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:17,489 warnings.warn(msg) 2025-09-08T06:44:17,970 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:17,970 !! 2025-09-08T06:44:17,970 ******************************************************************************** 2025-09-08T06:44:17,971 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:17,971 License :: OSI Approved :: MIT License 2025-09-08T06:44:17,971 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:17,971 ******************************************************************************** 2025-09-08T06:44:17,971 !! 2025-09-08T06:44:17,971 self._finalize_license_expression() 2025-09-08T06:44:18,047 running clean 2025-09-08T06:44:18,192 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:18,192 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:18,195 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T06:44:18,195 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T06:44:18,195 removing 'build' 2025-09-08T06:44:18,320 Failed to build limix-inference 2025-09-08T06:44:18,321 ERROR: Failed to build one or more wheels 2025-09-08T06:44:18,322 Exception information: 2025-09-08T06:44:18,322 Traceback (most recent call last): 2025-09-08T06:44:18,322 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:44:18,322 status = _inner_run() 2025-09-08T06:44:18,322 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:44:18,322 return self.run(options, args) 2025-09-08T06:44:18,322 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:44:18,322 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:44:18,322 return func(self, options, args) 2025-09-08T06:44:18,322 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T06:44:18,322 raise CommandError("Failed to build one or more wheels") 2025-09-08T06:44:18,322 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T06:44:18,326 Removed build tracker: '/tmp/pip-build-tracker-ryifmvil'