2025-09-08T06:44:10,842 Created temporary directory: /tmp/pip-build-tracker-bt8p6248 2025-09-08T06:44:10,843 Initialized build tracking at /tmp/pip-build-tracker-bt8p6248 2025-09-08T06:44:10,843 Created build tracker: /tmp/pip-build-tracker-bt8p6248 2025-09-08T06:44:10,843 Entered build tracker: /tmp/pip-build-tracker-bt8p6248 2025-09-08T06:44:10,843 Created temporary directory: /tmp/pip-wheel-h78q47tl 2025-09-08T06:44:10,846 Created temporary directory: /tmp/pip-ephem-wheel-cache-t7trgr_t 2025-09-08T06:44:10,906 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T06:44:10,909 2 location(s) to search for versions of limix-inference: 2025-09-08T06:44:10,909 * https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,909 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,909 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:10,909 Getting page 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https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T06:44:10,997 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,998 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:10,998 Found index url https://www.piwheels.org/simple/ 2025-09-08T06:44:11,085 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T06:44:11,088 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:11,088 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:11,088 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:11,089 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:11,089 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:11,089 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:11,089 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:11,090 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:11,090 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:44:11,090 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:44:11,090 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T06:44:11,118 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T06:44:11,120 Collecting limix-inference==1.0.3.dev2 2025-09-08T06:44:11,121 Created temporary directory: /tmp/pip-unpack-ago4yf03 2025-09-08T06:44:11,267 Downloading limix-inference-1.0.3.dev2.tar.gz (25 kB) 2025-09-08T06:44:11,328 Added limix-inference==1.0.3.dev2 from https://files.pythonhosted.org/packages/1d/04/ae91040538e401464b76b12f1540605d90d6686ef61d76062608a99f1967/limix-inference-1.0.3.dev2.tar.gz to build tracker '/tmp/pip-build-tracker-bt8p6248' 2025-09-08T06:44:11,329 Running setup.py (path:/tmp/pip-wheel-h78q47tl/limix-inference_095d97253f0642a9855161a145c6bc9c/setup.py) egg_info for package limix-inference 2025-09-08T06:44:11,329 Created temporary directory: /tmp/pip-pip-egg-info-cei4qy1c 2025-09-08T06:44:11,329 Preparing metadata (setup.py): started 2025-09-08T06:44:11,330 Running command python setup.py egg_info 2025-09-08T06:44:14,205 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:14,205 !! 2025-09-08T06:44:14,206 ******************************************************************************** 2025-09-08T06:44:14,206 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:14,206 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:14,206 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:14,206 or your builds will no longer be supported. 2025-09-08T06:44:14,206 ******************************************************************************** 2025-09-08T06:44:14,206 !! 2025-09-08T06:44:14,207 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:14,292 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:14,292 warnings.warn(msg) 2025-09-08T06:44:14,768 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.0.3dev2' to '1.0.3.dev2' 2025-09-08T06:44:14,768 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T06:44:14,771 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:14,771 !! 2025-09-08T06:44:14,771 ******************************************************************************** 2025-09-08T06:44:14,771 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:14,772 License :: OSI Approved :: MIT License 2025-09-08T06:44:14,772 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:14,772 ******************************************************************************** 2025-09-08T06:44:14,772 !! 2025-09-08T06:44:14,772 self._finalize_license_expression() 2025-09-08T06:44:14,846 running egg_info 2025-09-08T06:44:14,920 creating /tmp/pip-pip-egg-info-cei4qy1c/limix_inference.egg-info 2025-09-08T06:44:14,920 writing /tmp/pip-pip-egg-info-cei4qy1c/limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:14,922 writing dependency_links to /tmp/pip-pip-egg-info-cei4qy1c/limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:14,922 writing requirements to /tmp/pip-pip-egg-info-cei4qy1c/limix_inference.egg-info/requires.txt 2025-09-08T06:44:14,923 writing top-level names to /tmp/pip-pip-egg-info-cei4qy1c/limix_inference.egg-info/top_level.txt 2025-09-08T06:44:14,923 writing manifest file '/tmp/pip-pip-egg-info-cei4qy1c/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:15,152 reading manifest file '/tmp/pip-pip-egg-info-cei4qy1c/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:15,153 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:15,158 adding license file 'LICENSE' 2025-09-08T06:44:15,162 writing manifest file '/tmp/pip-pip-egg-info-cei4qy1c/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:15,287 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T06:44:15,292 Source in /tmp/pip-wheel-h78q47tl/limix-inference_095d97253f0642a9855161a145c6bc9c has version 1.0.3.dev2, which satisfies requirement limix-inference==1.0.3.dev2 from https://files.pythonhosted.org/packages/1d/04/ae91040538e401464b76b12f1540605d90d6686ef61d76062608a99f1967/limix-inference-1.0.3.dev2.tar.gz 2025-09-08T06:44:15,292 Removed limix-inference==1.0.3.dev2 from https://files.pythonhosted.org/packages/1d/04/ae91040538e401464b76b12f1540605d90d6686ef61d76062608a99f1967/limix-inference-1.0.3.dev2.tar.gz from build tracker '/tmp/pip-build-tracker-bt8p6248' 2025-09-08T06:44:15,297 Created temporary directory: /tmp/pip-unpack-l_12cs61 2025-09-08T06:44:15,298 Created temporary directory: /tmp/pip-unpack-7uay8ct1 2025-09-08T06:44:15,298 Building wheels for collected packages: limix-inference 2025-09-08T06:44:15,299 Created temporary directory: /tmp/pip-wheel-8xuu7gkx 2025-09-08T06:44:15,300 DEPRECATION: Building 'limix-inference' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'limix-inference'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T06:44:15,301 Building wheel for limix-inference (setup.py): started 2025-09-08T06:44:15,301 Destination directory: /tmp/pip-wheel-8xuu7gkx 2025-09-08T06:44:15,302 Running command python setup.py bdist_wheel 2025-09-08T06:44:16,316 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:16,317 !! 2025-09-08T06:44:16,317 ******************************************************************************** 2025-09-08T06:44:16,317 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:16,317 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:16,317 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:16,317 or your builds will no longer be supported. 2025-09-08T06:44:16,317 ******************************************************************************** 2025-09-08T06:44:16,318 !! 2025-09-08T06:44:16,318 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:16,403 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:16,403 warnings.warn(msg) 2025-09-08T06:44:16,865 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.0.3dev2' to '1.0.3.dev2' 2025-09-08T06:44:16,865 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T06:44:16,868 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:16,868 !! 2025-09-08T06:44:16,868 ******************************************************************************** 2025-09-08T06:44:16,868 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:16,869 License :: OSI Approved :: MIT License 2025-09-08T06:44:16,869 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:16,869 ******************************************************************************** 2025-09-08T06:44:16,869 !! 2025-09-08T06:44:16,869 self._finalize_license_expression() 2025-09-08T06:44:16,871 running bdist_wheel 2025-09-08T06:44:17,160 running build 2025-09-08T06:44:17,161 running build_py 2025-09-08T06:44:17,238 creating build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:17,239 copying limix_inference/fruits.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:17,239 copying limix_inference/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:44:17,241 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:17,241 copying limix_inference/mean/_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:17,242 copying limix_inference/mean/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:17,243 copying limix_inference/mean/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:17,243 copying limix_inference/mean/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:44:17,244 creating build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:17,245 copying limix_inference/lik/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:17,245 copying limix_inference/lik/_prod.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:17,246 copying limix_inference/lik/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:44:17,247 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:44:17,248 copying limix_inference/lmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:44:17,248 creating build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:17,249 copying limix_inference/liknorm/_machine.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:17,250 copying limix_inference/liknorm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:17,251 copying limix_inference/liknorm/_build.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:44:17,252 creating build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:17,252 copying limix_inference/random/_glmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:17,253 copying limix_inference/random/_canonical.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:17,253 copying limix_inference/random/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:44:17,254 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:44:17,255 copying limix_inference/glmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:44:17,256 creating build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:17,256 copying limix_inference/link/_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:17,257 copying limix_inference/link/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:44:17,258 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:17,258 copying limix_inference/cov/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:17,259 copying limix_inference/cov/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:17,260 copying limix_inference/cov/_eye.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:17,260 copying limix_inference/cov/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:44:17,261 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:17,262 copying limix_inference/lmm/_fastlmm/_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:17,263 copying limix_inference/lmm/_fastlmm/_core.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:17,263 copying limix_inference/lmm/_fastlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:44:17,264 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:17,265 copying limix_inference/lmm/_slowlmm/_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:17,265 copying limix_inference/lmm/_slowlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:44:17,266 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:17,267 copying limix_inference/glmm/_ep/_fixed.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:17,268 copying limix_inference/glmm/_ep/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:17,268 copying limix_inference/glmm/_ep/_ep.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:17,269 copying limix_inference/glmm/_ep/_conditioning.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:17,270 copying limix_inference/glmm/_ep/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:44:17,271 running egg_info 2025-09-08T06:44:17,349 writing limix_inference.egg-info/PKG-INFO 2025-09-08T06:44:17,351 writing dependency_links to limix_inference.egg-info/dependency_links.txt 2025-09-08T06:44:17,352 writing requirements to limix_inference.egg-info/requires.txt 2025-09-08T06:44:17,352 writing top-level names to limix_inference.egg-info/top_level.txt 2025-09-08T06:44:17,429 reading manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:17,433 reading manifest template 'MANIFEST.in' 2025-09-08T06:44:17,438 adding license file 'LICENSE' 2025-09-08T06:44:17,443 writing manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:44:17,444 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.cov.test' is absent from the `packages` configuration. 2025-09-08T06:44:17,444 !! 2025-09-08T06:44:17,444 ******************************************************************************** 2025-09-08T06:44:17,445 ############################ 2025-09-08T06:44:17,445 # Package would be ignored # 2025-09-08T06:44:17,445 ############################ 2025-09-08T06:44:17,445 Python recognizes 'limix_inference.cov.test' as an importable package[^1], 2025-09-08T06:44:17,445 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:17,445 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:17,445 package, please make sure that 'limix_inference.cov.test' is explicitly added 2025-09-08T06:44:17,445 to the `packages` configuration field. 2025-09-08T06:44:17,445 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:17,446 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:17,446 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:17,446 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:17,446 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:17,446 If you don't want 'limix_inference.cov.test' to be distributed and are 2025-09-08T06:44:17,446 already explicitly excluding 'limix_inference.cov.test' via 2025-09-08T06:44:17,446 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:17,446 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:17,446 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:17,447 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:17,447 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:17,447 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:17,447 even if it does not contain any `.py` files. 2025-09-08T06:44:17,447 On the other hand, currently there is no concept of package data 2025-09-08T06:44:17,447 directory, all directories are treated like packages. 2025-09-08T06:44:17,447 ******************************************************************************** 2025-09-08T06:44:17,448 !! 2025-09-08T06:44:17,448 check.warn(importable) 2025-09-08T06:44:17,448 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.glmm._ep.test' is absent from the `packages` configuration. 2025-09-08T06:44:17,448 !! 2025-09-08T06:44:17,448 ******************************************************************************** 2025-09-08T06:44:17,448 ############################ 2025-09-08T06:44:17,448 # Package would be ignored # 2025-09-08T06:44:17,448 ############################ 2025-09-08T06:44:17,448 Python recognizes 'limix_inference.glmm._ep.test' as an importable package[^1], 2025-09-08T06:44:17,449 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:17,449 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:17,449 package, please make sure that 'limix_inference.glmm._ep.test' is explicitly added 2025-09-08T06:44:17,449 to the `packages` configuration field. 2025-09-08T06:44:17,449 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:17,449 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:17,449 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:17,449 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:17,450 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:17,450 If you don't want 'limix_inference.glmm._ep.test' to be distributed and are 2025-09-08T06:44:17,450 already explicitly excluding 'limix_inference.glmm._ep.test' via 2025-09-08T06:44:17,450 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:17,450 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:17,450 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:17,450 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:17,451 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:17,451 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:17,451 even if it does not contain any `.py` files. 2025-09-08T06:44:17,451 On the other hand, currently there is no concept of package data 2025-09-08T06:44:17,451 directory, all directories are treated like packages. 2025-09-08T06:44:17,451 ******************************************************************************** 2025-09-08T06:44:17,451 !! 2025-09-08T06:44:17,451 check.warn(importable) 2025-09-08T06:44:17,452 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.link.test' is absent from the `packages` configuration. 2025-09-08T06:44:17,452 !! 2025-09-08T06:44:17,452 ******************************************************************************** 2025-09-08T06:44:17,452 ############################ 2025-09-08T06:44:17,452 # Package would be ignored # 2025-09-08T06:44:17,452 ############################ 2025-09-08T06:44:17,452 Python recognizes 'limix_inference.link.test' as an importable package[^1], 2025-09-08T06:44:17,452 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:17,452 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:17,452 package, please make sure that 'limix_inference.link.test' is explicitly added 2025-09-08T06:44:17,453 to the `packages` configuration field. 2025-09-08T06:44:17,453 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:17,453 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:17,453 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:17,453 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:17,453 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:17,453 If you don't want 'limix_inference.link.test' to be distributed and are 2025-09-08T06:44:17,454 already explicitly excluding 'limix_inference.link.test' via 2025-09-08T06:44:17,454 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:17,454 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:17,454 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:17,454 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:17,454 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:17,454 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:17,454 even if it does not contain any `.py` files. 2025-09-08T06:44:17,455 On the other hand, currently there is no concept of package data 2025-09-08T06:44:17,455 directory, all directories are treated like packages. 2025-09-08T06:44:17,455 ******************************************************************************** 2025-09-08T06:44:17,455 !! 2025-09-08T06:44:17,455 check.warn(importable) 2025-09-08T06:44:17,455 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._fastlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:17,455 !! 2025-09-08T06:44:17,455 ******************************************************************************** 2025-09-08T06:44:17,455 ############################ 2025-09-08T06:44:17,456 # Package would be ignored # 2025-09-08T06:44:17,456 ############################ 2025-09-08T06:44:17,456 Python recognizes 'limix_inference.lmm._fastlmm.test' as an importable package[^1], 2025-09-08T06:44:17,456 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:17,456 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:17,456 package, please make sure that 'limix_inference.lmm._fastlmm.test' is explicitly added 2025-09-08T06:44:17,456 to the `packages` configuration field. 2025-09-08T06:44:17,456 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:17,456 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:17,457 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:17,457 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:17,457 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:17,457 If you don't want 'limix_inference.lmm._fastlmm.test' to be distributed and are 2025-09-08T06:44:17,457 already explicitly excluding 'limix_inference.lmm._fastlmm.test' via 2025-09-08T06:44:17,457 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:17,457 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:17,457 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:17,458 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:17,458 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:17,458 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:17,458 even if it does not contain any `.py` files. 2025-09-08T06:44:17,458 On the other hand, currently there is no concept of package data 2025-09-08T06:44:17,458 directory, all directories are treated like packages. 2025-09-08T06:44:17,458 ******************************************************************************** 2025-09-08T06:44:17,459 !! 2025-09-08T06:44:17,459 check.warn(importable) 2025-09-08T06:44:17,459 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._slowlmm.test' is absent from the `packages` configuration. 2025-09-08T06:44:17,459 !! 2025-09-08T06:44:17,459 ******************************************************************************** 2025-09-08T06:44:17,459 ############################ 2025-09-08T06:44:17,459 # Package would be ignored # 2025-09-08T06:44:17,459 ############################ 2025-09-08T06:44:17,459 Python recognizes 'limix_inference.lmm._slowlmm.test' as an importable package[^1], 2025-09-08T06:44:17,459 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:17,460 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:17,460 package, please make sure that 'limix_inference.lmm._slowlmm.test' is explicitly added 2025-09-08T06:44:17,460 to the `packages` configuration field. 2025-09-08T06:44:17,460 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:17,460 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:17,460 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:17,460 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:17,461 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:17,461 If you don't want 'limix_inference.lmm._slowlmm.test' to be distributed and are 2025-09-08T06:44:17,461 already explicitly excluding 'limix_inference.lmm._slowlmm.test' via 2025-09-08T06:44:17,461 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:17,461 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:17,461 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:17,461 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:17,461 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:17,462 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:17,462 even if it does not contain any `.py` files. 2025-09-08T06:44:17,462 On the other hand, currently there is no concept of package data 2025-09-08T06:44:17,462 directory, all directories are treated like packages. 2025-09-08T06:44:17,462 ******************************************************************************** 2025-09-08T06:44:17,462 !! 2025-09-08T06:44:17,462 check.warn(importable) 2025-09-08T06:44:17,462 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.mean.test' is absent from the `packages` configuration. 2025-09-08T06:44:17,462 !! 2025-09-08T06:44:17,463 ******************************************************************************** 2025-09-08T06:44:17,463 ############################ 2025-09-08T06:44:17,463 # Package would be ignored # 2025-09-08T06:44:17,463 ############################ 2025-09-08T06:44:17,463 Python recognizes 'limix_inference.mean.test' as an importable package[^1], 2025-09-08T06:44:17,463 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:17,463 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:17,463 package, please make sure that 'limix_inference.mean.test' is explicitly added 2025-09-08T06:44:17,463 to the `packages` configuration field. 2025-09-08T06:44:17,464 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:17,464 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:17,464 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:17,464 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:17,464 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:17,464 If you don't want 'limix_inference.mean.test' to be distributed and are 2025-09-08T06:44:17,464 already explicitly excluding 'limix_inference.mean.test' via 2025-09-08T06:44:17,464 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:17,464 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:17,465 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:17,465 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:17,465 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:17,465 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:17,465 even if it does not contain any `.py` files. 2025-09-08T06:44:17,465 On the other hand, currently there is no concept of package data 2025-09-08T06:44:17,465 directory, all directories are treated like packages. 2025-09-08T06:44:17,466 ******************************************************************************** 2025-09-08T06:44:17,466 !! 2025-09-08T06:44:17,466 check.warn(importable) 2025-09-08T06:44:17,466 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.random.test' is absent from the `packages` configuration. 2025-09-08T06:44:17,466 !! 2025-09-08T06:44:17,466 ******************************************************************************** 2025-09-08T06:44:17,466 ############################ 2025-09-08T06:44:17,466 # Package would be ignored # 2025-09-08T06:44:17,466 ############################ 2025-09-08T06:44:17,466 Python recognizes 'limix_inference.random.test' as an importable package[^1], 2025-09-08T06:44:17,467 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:17,467 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:17,467 package, please make sure that 'limix_inference.random.test' is explicitly added 2025-09-08T06:44:17,467 to the `packages` configuration field. 2025-09-08T06:44:17,467 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:17,467 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:17,467 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:17,467 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:17,468 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:17,468 If you don't want 'limix_inference.random.test' to be distributed and are 2025-09-08T06:44:17,468 already explicitly excluding 'limix_inference.random.test' via 2025-09-08T06:44:17,468 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:17,468 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:17,468 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:17,468 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:17,468 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:17,469 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:17,469 even if it does not contain any `.py` files. 2025-09-08T06:44:17,469 On the other hand, currently there is no concept of package data 2025-09-08T06:44:17,469 directory, all directories are treated like packages. 2025-09-08T06:44:17,469 ******************************************************************************** 2025-09-08T06:44:17,469 !! 2025-09-08T06:44:17,469 check.warn(importable) 2025-09-08T06:44:17,469 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.test' is absent from the `packages` configuration. 2025-09-08T06:44:17,470 !! 2025-09-08T06:44:17,470 ******************************************************************************** 2025-09-08T06:44:17,470 ############################ 2025-09-08T06:44:17,470 # Package would be ignored # 2025-09-08T06:44:17,470 ############################ 2025-09-08T06:44:17,470 Python recognizes 'limix_inference.test' as an importable package[^1], 2025-09-08T06:44:17,470 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:44:17,470 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:44:17,470 package, please make sure that 'limix_inference.test' is explicitly added 2025-09-08T06:44:17,470 to the `packages` configuration field. 2025-09-08T06:44:17,471 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:44:17,471 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:44:17,471 instead of `find_packages(...)`/`find:`). 2025-09-08T06:44:17,471 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:44:17,471 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:44:17,471 If you don't want 'limix_inference.test' to be distributed and are 2025-09-08T06:44:17,471 already explicitly excluding 'limix_inference.test' via 2025-09-08T06:44:17,472 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:44:17,472 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:44:17,472 combination with a more fine grained `package-data` configuration. 2025-09-08T06:44:17,472 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:44:17,472 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:44:17,472 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:44:17,472 even if it does not contain any `.py` files. 2025-09-08T06:44:17,472 On the other hand, currently there is no concept of package data 2025-09-08T06:44:17,473 directory, all directories are treated like packages. 2025-09-08T06:44:17,473 ******************************************************************************** 2025-09-08T06:44:17,473 !! 2025-09-08T06:44:17,473 check.warn(importable) 2025-09-08T06:44:17,473 creating build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:17,473 copying limix_inference/test/test_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:44:17,473 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:17,473 copying limix_inference/mean/test/test_linear_mean.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:17,473 copying limix_inference/mean/test/test_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:44:17,473 creating build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:17,474 copying limix_inference/random/test/test_sampling.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:44:17,474 creating build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:17,474 copying limix_inference/link/test/test_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:44:17,474 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:17,474 copying limix_inference/cov/test/test_eye_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:17,474 copying limix_inference/cov/test/test_linear_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:17,474 copying limix_inference/cov/test/test_sum_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:44:17,474 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:44:17,474 copying limix_inference/lmm/_fastlmm/test/test_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:44:17,474 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:44:17,474 copying limix_inference/lmm/_slowlmm/test/test_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:44:17,475 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:17,475 copying limix_inference/glmm/_ep/test/test_bernoulli.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:17,475 copying limix_inference/glmm/_ep/test/test_binomial.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:17,475 copying limix_inference/glmm/_ep/test/test_poisson.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:44:17,475 running build_ext 2025-09-08T06:44:17,475 generating cffi module 'build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c' 2025-09-08T06:44:17,475 creating build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:17,793 building 'limix_inference.liknorm._ffi' extension 2025-09-08T06:44:17,794 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T06:44:17,794 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.o 2025-09-08T06:44:18,078 build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c:574:14: fatal error: liknorm/liknorm.h: No such file or directory 2025-09-08T06:44:18,078 574 | #include "liknorm/liknorm.h" 2025-09-08T06:44:18,079 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T06:44:18,079 compilation terminated. 2025-09-08T06:44:18,082 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T06:44:18,246 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T06:44:18,259 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T06:44:18,259 exec(compile('"'"''"'"''"'"' 2025-09-08T06:44:18,259 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:44:18,259 # 2025-09-08T06:44:18,259 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:44:18,259 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:44:18,259 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:44:18,259 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:44:18,259 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:44:18,259 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:44:18,259 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:44:18,259 import os, sys, tokenize, traceback 2025-09-08T06:44:18,259 2025-09-08T06:44:18,259 try: 2025-09-08T06:44:18,259 import setuptools 2025-09-08T06:44:18,259 except ImportError: 2025-09-08T06:44:18,259 print( 2025-09-08T06:44:18,259 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:44:18,259 "the build environment with exception:", 2025-09-08T06:44:18,259 file=sys.stderr, 2025-09-08T06:44:18,259 ) 2025-09-08T06:44:18,259 traceback.print_exc() 2025-09-08T06:44:18,259 sys.exit(1) 2025-09-08T06:44:18,259 2025-09-08T06:44:18,259 __file__ = %r 2025-09-08T06:44:18,259 sys.argv[0] = __file__ 2025-09-08T06:44:18,259 2025-09-08T06:44:18,259 if os.path.exists(__file__): 2025-09-08T06:44:18,259 filename = __file__ 2025-09-08T06:44:18,259 with tokenize.open(__file__) as f: 2025-09-08T06:44:18,259 setup_py_code = f.read() 2025-09-08T06:44:18,259 else: 2025-09-08T06:44:18,259 filename = "" 2025-09-08T06:44:18,259 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:44:18,259 2025-09-08T06:44:18,259 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:44:18,259 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-h78q47tl/limix-inference_095d97253f0642a9855161a145c6bc9c/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-8xuu7gkx[/] 2025-09-08T06:44:18,259 [bold magenta]cwd[/]: /tmp/pip-wheel-h78q47tl/limix-inference_095d97253f0642a9855161a145c6bc9c/ 2025-09-08T06:44:18,259 Building wheel for limix-inference (setup.py): finished with status 'error' 2025-09-08T06:44:18,260 ERROR: Failed building wheel for limix-inference 2025-09-08T06:44:18,261 Running setup.py clean for limix-inference 2025-09-08T06:44:18,262 Running command python setup.py clean 2025-09-08T06:44:19,246 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:44:19,247 !! 2025-09-08T06:44:19,247 ******************************************************************************** 2025-09-08T06:44:19,247 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:44:19,247 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:44:19,247 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:44:19,247 or your builds will no longer be supported. 2025-09-08T06:44:19,247 ******************************************************************************** 2025-09-08T06:44:19,248 !! 2025-09-08T06:44:19,248 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:44:19,333 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:44:19,334 warnings.warn(msg) 2025-09-08T06:44:19,801 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '1.0.3dev2' to '1.0.3.dev2' 2025-09-08T06:44:19,801 self.metadata.version = self._normalize_version(self.metadata.version) 2025-09-08T06:44:19,804 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:44:19,804 !! 2025-09-08T06:44:19,804 ******************************************************************************** 2025-09-08T06:44:19,804 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:44:19,804 License :: OSI Approved :: MIT License 2025-09-08T06:44:19,805 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:44:19,805 ******************************************************************************** 2025-09-08T06:44:19,805 !! 2025-09-08T06:44:19,805 self._finalize_license_expression() 2025-09-08T06:44:19,878 running clean 2025-09-08T06:44:20,019 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:20,019 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:44:20,022 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T06:44:20,022 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T06:44:20,022 removing 'build' 2025-09-08T06:44:20,147 Failed to build limix-inference 2025-09-08T06:44:20,148 ERROR: Failed to build one or more wheels 2025-09-08T06:44:20,149 Exception information: 2025-09-08T06:44:20,149 Traceback (most recent call last): 2025-09-08T06:44:20,149 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:44:20,149 status = _inner_run() 2025-09-08T06:44:20,149 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:44:20,149 return self.run(options, args) 2025-09-08T06:44:20,149 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:44:20,149 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:44:20,149 return func(self, options, args) 2025-09-08T06:44:20,149 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T06:44:20,149 raise CommandError("Failed to build one or more wheels") 2025-09-08T06:44:20,149 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T06:44:20,153 Removed build tracker: '/tmp/pip-build-tracker-bt8p6248'