2025-09-08T06:46:34,806 Created temporary directory: /tmp/pip-build-tracker-6g5v_pdh 2025-09-08T06:46:34,807 Initialized build tracking at /tmp/pip-build-tracker-6g5v_pdh 2025-09-08T06:46:34,807 Created build tracker: /tmp/pip-build-tracker-6g5v_pdh 2025-09-08T06:46:34,807 Entered build tracker: /tmp/pip-build-tracker-6g5v_pdh 2025-09-08T06:46:34,807 Created temporary directory: /tmp/pip-wheel-ki62i5ut 2025-09-08T06:46:34,810 Created temporary directory: /tmp/pip-ephem-wheel-cache-l1eers_p 2025-09-08T06:46:34,871 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-08T06:46:34,873 2 location(s) to search for versions of limix-inference: 2025-09-08T06:46:34,873 * https://pypi.org/simple/limix-inference/ 2025-09-08T06:46:34,873 * https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:46:34,873 Fetching project page and analyzing links: https://pypi.org/simple/limix-inference/ 2025-09-08T06:46:34,874 Getting page 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https://files.pythonhosted.org/packages/b8/e8/c54d52bdcd945b9a4c71fbbcf03797d190000ce37126c9f9ae3d46619dcf/limix-inference-1.1.2.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.2 2025-09-08T06:46:34,957 Found link https://files.pythonhosted.org/packages/7e/09/2c88d1b16d0cde089f51eb54790c7ce0cdf5afc57592b7b55e8222203ce0/limix-inference-1.1.3.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.3 2025-09-08T06:46:34,957 Found link https://files.pythonhosted.org/packages/cf/21/4f4f8caaf4ebef6d5948528c8a0dcf5863ab819faf97123797c57fe2c675/limix-inference-1.1.4.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.4 2025-09-08T06:46:34,957 Found link https://files.pythonhosted.org/packages/e8/cd/0dddf22fb999f514e9d2f6a4a95a5ebe4fbf677fae4c3136d14d258ce1c8/limix-inference-1.1.5.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.5 2025-09-08T06:46:34,957 Found link https://files.pythonhosted.org/packages/37/90/968ce27b1e6d3350b72dbebe7cec3652856460991565a814850b63c91bc9/limix-inference-1.1.6.tar.gz (from https://pypi.org/simple/limix-inference/), version: 1.1.6 2025-09-08T06:46:34,958 Fetching project page and analyzing links: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:46:34,958 Getting page https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:46:34,959 Found index url https://www.piwheels.org/simple/ 2025-09-08T06:46:35,047 Fetched page https://www.piwheels.org/simple/limix-inference/ as text/html 2025-09-08T06:46:35,050 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.6-py3-none-any.whl#sha256=651f7582bd2a442b4225a69469bcda5fbf76a162526fbc7a729f3c500e3a1213 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:46:35,050 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.5-py3-none-any.whl#sha256=5bda56053fd5f49df45a3fa0355aa2e8eb7188b2034a5f8f3ef53a34d59f3c4c (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:46:35,051 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.4-py3-none-any.whl#sha256=8ac3fc4a2bb47fe430b536bd2ab999c9f1adf98649c81b84e3c3375bae68a7f5 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:46:35,051 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.3-py3-none-any.whl#sha256=ea94a7bf8b3e34500a9a155260fba2b2080259767f9520885d86caa0db8f82be (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:46:35,051 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.2-py3-none-any.whl#sha256=dd03018c1fab1132bb8de87bb4acad84ea64bc1ef102b6468e39cc3402fb53ff (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:46:35,051 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.1-py3-none-any.whl#sha256=e2cf1f0dceb70a5e3e8c599f7b837ff2e5f720a0b8eeadc3a753f67d5ced9884 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:46:35,051 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.1.0-py3-none-any.whl#sha256=91b43e3e511c0d914e6a452b861a3ac5f01283a03917ed6fe513e7e1d56a9f60 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:46:35,052 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev2-py3-none-any.whl#sha256=bef50a5f6deb5259a976b1356a18e19f2d77ab81d9e24ea0289eff832e394a68 (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:46:35,052 Skipping link: No binaries permitted for limix-inference: https://archive1.piwheels.org/simple/limix-inference/limix_inference-1.0.2.dev1-py3-none-any.whl#sha256=94b2feb2718da440d09feb6bb06ec54ff2d5b2dec96f825271b8c3834da7e1cd (from https://www.piwheels.org/simple/limix-inference/) 2025-09-08T06:46:35,052 Skipping link: not a file: https://www.piwheels.org/simple/limix-inference/ 2025-09-08T06:46:35,052 Skipping link: not a file: https://pypi.org/simple/limix-inference/ 2025-09-08T06:46:35,081 Given no hashes to check 1 links for project 'limix-inference': discarding no candidates 2025-09-08T06:46:35,082 Collecting limix-inference==1.0.3 2025-09-08T06:46:35,083 Created temporary directory: /tmp/pip-unpack-ry7ydr7l 2025-09-08T06:46:35,218 Downloading limix-inference-1.0.3.tar.gz (25 kB) 2025-09-08T06:46:35,279 Added limix-inference==1.0.3 from https://files.pythonhosted.org/packages/7a/ed/f57224335a6c15c05414e95a3342e3a0332e0888ff736959f868d9487ee6/limix-inference-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-6g5v_pdh' 2025-09-08T06:46:35,280 Running setup.py (path:/tmp/pip-wheel-ki62i5ut/limix-inference_62b4f6c2c910483291bd65fbab6a4bbe/setup.py) egg_info for package limix-inference 2025-09-08T06:46:35,280 Created temporary directory: /tmp/pip-pip-egg-info-dqp48kun 2025-09-08T06:46:35,280 Preparing metadata (setup.py): started 2025-09-08T06:46:35,281 Running command python setup.py egg_info 2025-09-08T06:46:36,284 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:46:36,285 !! 2025-09-08T06:46:36,285 ******************************************************************************** 2025-09-08T06:46:36,285 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:46:36,285 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:46:36,285 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:46:36,285 or your builds will no longer be supported. 2025-09-08T06:46:36,285 ******************************************************************************** 2025-09-08T06:46:36,286 !! 2025-09-08T06:46:36,286 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:46:36,385 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:46:36,385 warnings.warn(msg) 2025-09-08T06:46:36,865 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:46:36,865 !! 2025-09-08T06:46:36,866 ******************************************************************************** 2025-09-08T06:46:36,866 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:46:36,866 License :: OSI Approved :: MIT License 2025-09-08T06:46:36,866 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:46:36,866 ******************************************************************************** 2025-09-08T06:46:36,866 !! 2025-09-08T06:46:36,866 self._finalize_license_expression() 2025-09-08T06:46:36,939 running egg_info 2025-09-08T06:46:37,012 creating /tmp/pip-pip-egg-info-dqp48kun/limix_inference.egg-info 2025-09-08T06:46:37,012 writing /tmp/pip-pip-egg-info-dqp48kun/limix_inference.egg-info/PKG-INFO 2025-09-08T06:46:37,014 writing dependency_links to /tmp/pip-pip-egg-info-dqp48kun/limix_inference.egg-info/dependency_links.txt 2025-09-08T06:46:37,015 writing requirements to /tmp/pip-pip-egg-info-dqp48kun/limix_inference.egg-info/requires.txt 2025-09-08T06:46:37,015 writing top-level names to /tmp/pip-pip-egg-info-dqp48kun/limix_inference.egg-info/top_level.txt 2025-09-08T06:46:37,015 writing manifest file '/tmp/pip-pip-egg-info-dqp48kun/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:46:37,241 reading manifest file '/tmp/pip-pip-egg-info-dqp48kun/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:46:37,242 reading manifest template 'MANIFEST.in' 2025-09-08T06:46:37,247 adding license file 'LICENSE' 2025-09-08T06:46:37,251 writing manifest file '/tmp/pip-pip-egg-info-dqp48kun/limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:46:37,376 Preparing metadata (setup.py): finished with status 'done' 2025-09-08T06:46:37,381 Source in /tmp/pip-wheel-ki62i5ut/limix-inference_62b4f6c2c910483291bd65fbab6a4bbe has version 1.0.3, which satisfies requirement limix-inference==1.0.3 from https://files.pythonhosted.org/packages/7a/ed/f57224335a6c15c05414e95a3342e3a0332e0888ff736959f868d9487ee6/limix-inference-1.0.3.tar.gz 2025-09-08T06:46:37,381 Removed limix-inference==1.0.3 from https://files.pythonhosted.org/packages/7a/ed/f57224335a6c15c05414e95a3342e3a0332e0888ff736959f868d9487ee6/limix-inference-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-6g5v_pdh' 2025-09-08T06:46:37,386 Created temporary directory: /tmp/pip-unpack-15k5ol1h 2025-09-08T06:46:37,387 Created temporary directory: /tmp/pip-unpack-rqvobqyd 2025-09-08T06:46:37,387 Building wheels for collected packages: limix-inference 2025-09-08T06:46:37,388 Created temporary directory: /tmp/pip-wheel-l3xv8nn3 2025-09-08T06:46:37,389 DEPRECATION: Building 'limix-inference' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'limix-inference'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-08T06:46:37,390 Building wheel for limix-inference (setup.py): started 2025-09-08T06:46:37,391 Destination directory: /tmp/pip-wheel-l3xv8nn3 2025-09-08T06:46:37,391 Running command python setup.py bdist_wheel 2025-09-08T06:46:38,394 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:46:38,394 !! 2025-09-08T06:46:38,394 ******************************************************************************** 2025-09-08T06:46:38,394 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:46:38,394 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:46:38,395 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:46:38,395 or your builds will no longer be supported. 2025-09-08T06:46:38,395 ******************************************************************************** 2025-09-08T06:46:38,395 !! 2025-09-08T06:46:38,395 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:46:38,493 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:46:38,494 warnings.warn(msg) 2025-09-08T06:46:38,959 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:46:38,959 !! 2025-09-08T06:46:38,959 ******************************************************************************** 2025-09-08T06:46:38,959 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:46:38,959 License :: OSI Approved :: MIT License 2025-09-08T06:46:38,960 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:46:38,960 ******************************************************************************** 2025-09-08T06:46:38,960 !! 2025-09-08T06:46:38,960 self._finalize_license_expression() 2025-09-08T06:46:38,960 running bdist_wheel 2025-09-08T06:46:39,251 running build 2025-09-08T06:46:39,252 running build_py 2025-09-08T06:46:39,326 creating build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:46:39,326 copying limix_inference/fruits.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:46:39,327 copying limix_inference/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference 2025-09-08T06:46:39,328 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:46:39,328 copying limix_inference/mean/_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:46:39,328 copying limix_inference/mean/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:46:39,329 copying limix_inference/mean/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:46:39,329 copying limix_inference/mean/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean 2025-09-08T06:46:39,330 creating build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:46:39,330 copying limix_inference/lik/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:46:39,331 copying limix_inference/lik/_prod.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:46:39,331 copying limix_inference/lik/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lik 2025-09-08T06:46:39,332 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:46:39,332 copying limix_inference/lmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm 2025-09-08T06:46:39,333 creating build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:46:39,333 copying limix_inference/liknorm/_machine.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:46:39,334 copying limix_inference/liknorm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:46:39,334 copying limix_inference/liknorm/_build.py -> build/lib.linux-armv7l-cpython-313/limix_inference/liknorm 2025-09-08T06:46:39,335 creating build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:46:39,335 copying limix_inference/random/_glmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:46:39,336 copying limix_inference/random/_canonical.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:46:39,336 copying limix_inference/random/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random 2025-09-08T06:46:39,337 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:46:39,337 copying limix_inference/glmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm 2025-09-08T06:46:39,338 creating build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:46:39,338 copying limix_inference/link/_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:46:39,339 copying limix_inference/link/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link 2025-09-08T06:46:39,339 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:46:39,340 copying limix_inference/cov/_linear.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:46:39,340 copying limix_inference/cov/_sum.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:46:39,341 copying limix_inference/cov/_eye.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:46:39,341 copying limix_inference/cov/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov 2025-09-08T06:46:39,342 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:46:39,342 copying limix_inference/lmm/_fastlmm/_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:46:39,343 copying limix_inference/lmm/_fastlmm/_core.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:46:39,343 copying limix_inference/lmm/_fastlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm 2025-09-08T06:46:39,344 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:46:39,344 copying limix_inference/lmm/_slowlmm/_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:46:39,345 copying limix_inference/lmm/_slowlmm/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm 2025-09-08T06:46:39,345 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:46:39,346 copying limix_inference/glmm/_ep/_fixed.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:46:39,346 copying limix_inference/glmm/_ep/_expfam.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:46:39,347 copying limix_inference/glmm/_ep/_ep.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:46:39,347 copying limix_inference/glmm/_ep/_conditioning.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:46:39,348 copying limix_inference/glmm/_ep/__init__.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep 2025-09-08T06:46:39,348 running egg_info 2025-09-08T06:46:39,427 writing limix_inference.egg-info/PKG-INFO 2025-09-08T06:46:39,428 writing dependency_links to limix_inference.egg-info/dependency_links.txt 2025-09-08T06:46:39,429 writing requirements to limix_inference.egg-info/requires.txt 2025-09-08T06:46:39,429 writing top-level names to limix_inference.egg-info/top_level.txt 2025-09-08T06:46:39,507 reading manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:46:39,511 reading manifest template 'MANIFEST.in' 2025-09-08T06:46:39,516 adding license file 'LICENSE' 2025-09-08T06:46:39,520 writing manifest file 'limix_inference.egg-info/SOURCES.txt' 2025-09-08T06:46:39,522 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.cov.test' is absent from the `packages` configuration. 2025-09-08T06:46:39,522 !! 2025-09-08T06:46:39,522 ******************************************************************************** 2025-09-08T06:46:39,522 ############################ 2025-09-08T06:46:39,522 # Package would be ignored # 2025-09-08T06:46:39,522 ############################ 2025-09-08T06:46:39,522 Python recognizes 'limix_inference.cov.test' as an importable package[^1], 2025-09-08T06:46:39,522 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:46:39,523 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:46:39,523 package, please make sure that 'limix_inference.cov.test' is explicitly added 2025-09-08T06:46:39,523 to the `packages` configuration field. 2025-09-08T06:46:39,523 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:46:39,523 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:46:39,523 instead of `find_packages(...)`/`find:`). 2025-09-08T06:46:39,523 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:46:39,523 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:46:39,524 If you don't want 'limix_inference.cov.test' to be distributed and are 2025-09-08T06:46:39,524 already explicitly excluding 'limix_inference.cov.test' via 2025-09-08T06:46:39,524 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:46:39,524 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:46:39,524 combination with a more fine grained `package-data` configuration. 2025-09-08T06:46:39,524 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:46:39,524 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:46:39,525 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:46:39,525 even if it does not contain any `.py` files. 2025-09-08T06:46:39,525 On the other hand, currently there is no concept of package data 2025-09-08T06:46:39,525 directory, all directories are treated like packages. 2025-09-08T06:46:39,525 ******************************************************************************** 2025-09-08T06:46:39,525 !! 2025-09-08T06:46:39,525 check.warn(importable) 2025-09-08T06:46:39,525 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.glmm._ep.test' is absent from the `packages` configuration. 2025-09-08T06:46:39,525 !! 2025-09-08T06:46:39,526 ******************************************************************************** 2025-09-08T06:46:39,526 ############################ 2025-09-08T06:46:39,526 # Package would be ignored # 2025-09-08T06:46:39,526 ############################ 2025-09-08T06:46:39,526 Python recognizes 'limix_inference.glmm._ep.test' as an importable package[^1], 2025-09-08T06:46:39,526 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:46:39,526 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:46:39,526 package, please make sure that 'limix_inference.glmm._ep.test' is explicitly added 2025-09-08T06:46:39,526 to the `packages` configuration field. 2025-09-08T06:46:39,527 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:46:39,527 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:46:39,527 instead of `find_packages(...)`/`find:`). 2025-09-08T06:46:39,527 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:46:39,527 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:46:39,527 If you don't want 'limix_inference.glmm._ep.test' to be distributed and are 2025-09-08T06:46:39,527 already explicitly excluding 'limix_inference.glmm._ep.test' via 2025-09-08T06:46:39,528 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:46:39,528 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:46:39,528 combination with a more fine grained `package-data` configuration. 2025-09-08T06:46:39,528 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:46:39,528 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:46:39,528 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:46:39,528 even if it does not contain any `.py` files. 2025-09-08T06:46:39,529 On the other hand, currently there is no concept of package data 2025-09-08T06:46:39,529 directory, all directories are treated like packages. 2025-09-08T06:46:39,529 ******************************************************************************** 2025-09-08T06:46:39,529 !! 2025-09-08T06:46:39,529 check.warn(importable) 2025-09-08T06:46:39,529 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.link.test' is absent from the `packages` configuration. 2025-09-08T06:46:39,529 !! 2025-09-08T06:46:39,529 ******************************************************************************** 2025-09-08T06:46:39,529 ############################ 2025-09-08T06:46:39,529 # Package would be ignored # 2025-09-08T06:46:39,530 ############################ 2025-09-08T06:46:39,530 Python recognizes 'limix_inference.link.test' as an importable package[^1], 2025-09-08T06:46:39,530 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:46:39,530 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:46:39,530 package, please make sure that 'limix_inference.link.test' is explicitly added 2025-09-08T06:46:39,530 to the `packages` configuration field. 2025-09-08T06:46:39,530 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:46:39,530 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:46:39,531 instead of `find_packages(...)`/`find:`). 2025-09-08T06:46:39,531 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:46:39,531 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:46:39,531 If you don't want 'limix_inference.link.test' to be distributed and are 2025-09-08T06:46:39,531 already explicitly excluding 'limix_inference.link.test' via 2025-09-08T06:46:39,531 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:46:39,531 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:46:39,531 combination with a more fine grained `package-data` configuration. 2025-09-08T06:46:39,532 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:46:39,532 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:46:39,532 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:46:39,532 even if it does not contain any `.py` files. 2025-09-08T06:46:39,532 On the other hand, currently there is no concept of package data 2025-09-08T06:46:39,532 directory, all directories are treated like packages. 2025-09-08T06:46:39,532 ******************************************************************************** 2025-09-08T06:46:39,533 !! 2025-09-08T06:46:39,533 check.warn(importable) 2025-09-08T06:46:39,533 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._fastlmm.test' is absent from the `packages` configuration. 2025-09-08T06:46:39,533 !! 2025-09-08T06:46:39,533 ******************************************************************************** 2025-09-08T06:46:39,533 ############################ 2025-09-08T06:46:39,533 # Package would be ignored # 2025-09-08T06:46:39,533 ############################ 2025-09-08T06:46:39,533 Python recognizes 'limix_inference.lmm._fastlmm.test' as an importable package[^1], 2025-09-08T06:46:39,533 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:46:39,534 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:46:39,534 package, please make sure that 'limix_inference.lmm._fastlmm.test' is explicitly added 2025-09-08T06:46:39,534 to the `packages` configuration field. 2025-09-08T06:46:39,534 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:46:39,534 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:46:39,534 instead of `find_packages(...)`/`find:`). 2025-09-08T06:46:39,534 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:46:39,534 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:46:39,535 If you don't want 'limix_inference.lmm._fastlmm.test' to be distributed and are 2025-09-08T06:46:39,535 already explicitly excluding 'limix_inference.lmm._fastlmm.test' via 2025-09-08T06:46:39,535 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:46:39,535 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:46:39,535 combination with a more fine grained `package-data` configuration. 2025-09-08T06:46:39,535 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:46:39,535 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:46:39,536 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:46:39,536 even if it does not contain any `.py` files. 2025-09-08T06:46:39,536 On the other hand, currently there is no concept of package data 2025-09-08T06:46:39,536 directory, all directories are treated like packages. 2025-09-08T06:46:39,536 ******************************************************************************** 2025-09-08T06:46:39,536 !! 2025-09-08T06:46:39,536 check.warn(importable) 2025-09-08T06:46:39,536 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.lmm._slowlmm.test' is absent from the `packages` configuration. 2025-09-08T06:46:39,536 !! 2025-09-08T06:46:39,537 ******************************************************************************** 2025-09-08T06:46:39,537 ############################ 2025-09-08T06:46:39,537 # Package would be ignored # 2025-09-08T06:46:39,537 ############################ 2025-09-08T06:46:39,537 Python recognizes 'limix_inference.lmm._slowlmm.test' as an importable package[^1], 2025-09-08T06:46:39,537 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:46:39,537 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:46:39,537 package, please make sure that 'limix_inference.lmm._slowlmm.test' is explicitly added 2025-09-08T06:46:39,537 to the `packages` configuration field. 2025-09-08T06:46:39,538 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:46:39,538 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:46:39,538 instead of `find_packages(...)`/`find:`). 2025-09-08T06:46:39,538 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:46:39,538 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:46:39,538 If you don't want 'limix_inference.lmm._slowlmm.test' to be distributed and are 2025-09-08T06:46:39,538 already explicitly excluding 'limix_inference.lmm._slowlmm.test' via 2025-09-08T06:46:39,538 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:46:39,539 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:46:39,539 combination with a more fine grained `package-data` configuration. 2025-09-08T06:46:39,539 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:46:39,539 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:46:39,539 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:46:39,539 even if it does not contain any `.py` files. 2025-09-08T06:46:39,539 On the other hand, currently there is no concept of package data 2025-09-08T06:46:39,539 directory, all directories are treated like packages. 2025-09-08T06:46:39,540 ******************************************************************************** 2025-09-08T06:46:39,540 !! 2025-09-08T06:46:39,540 check.warn(importable) 2025-09-08T06:46:39,540 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.mean.test' is absent from the `packages` configuration. 2025-09-08T06:46:39,540 !! 2025-09-08T06:46:39,540 ******************************************************************************** 2025-09-08T06:46:39,540 ############################ 2025-09-08T06:46:39,540 # Package would be ignored # 2025-09-08T06:46:39,540 ############################ 2025-09-08T06:46:39,541 Python recognizes 'limix_inference.mean.test' as an importable package[^1], 2025-09-08T06:46:39,541 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:46:39,541 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:46:39,541 package, please make sure that 'limix_inference.mean.test' is explicitly added 2025-09-08T06:46:39,541 to the `packages` configuration field. 2025-09-08T06:46:39,541 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:46:39,541 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:46:39,541 instead of `find_packages(...)`/`find:`). 2025-09-08T06:46:39,541 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:46:39,542 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:46:39,542 If you don't want 'limix_inference.mean.test' to be distributed and are 2025-09-08T06:46:39,542 already explicitly excluding 'limix_inference.mean.test' via 2025-09-08T06:46:39,542 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:46:39,542 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:46:39,542 combination with a more fine grained `package-data` configuration. 2025-09-08T06:46:39,542 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:46:39,543 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:46:39,543 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:46:39,543 even if it does not contain any `.py` files. 2025-09-08T06:46:39,543 On the other hand, currently there is no concept of package data 2025-09-08T06:46:39,543 directory, all directories are treated like packages. 2025-09-08T06:46:39,543 ******************************************************************************** 2025-09-08T06:46:39,543 !! 2025-09-08T06:46:39,543 check.warn(importable) 2025-09-08T06:46:39,544 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.random.test' is absent from the `packages` configuration. 2025-09-08T06:46:39,544 !! 2025-09-08T06:46:39,544 ******************************************************************************** 2025-09-08T06:46:39,544 ############################ 2025-09-08T06:46:39,544 # Package would be ignored # 2025-09-08T06:46:39,544 ############################ 2025-09-08T06:46:39,544 Python recognizes 'limix_inference.random.test' as an importable package[^1], 2025-09-08T06:46:39,544 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:46:39,544 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:46:39,544 package, please make sure that 'limix_inference.random.test' is explicitly added 2025-09-08T06:46:39,545 to the `packages` configuration field. 2025-09-08T06:46:39,545 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:46:39,545 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:46:39,545 instead of `find_packages(...)`/`find:`). 2025-09-08T06:46:39,545 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:46:39,545 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:46:39,545 If you don't want 'limix_inference.random.test' to be distributed and are 2025-09-08T06:46:39,545 already explicitly excluding 'limix_inference.random.test' via 2025-09-08T06:46:39,546 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:46:39,546 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:46:39,546 combination with a more fine grained `package-data` configuration. 2025-09-08T06:46:39,546 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:46:39,546 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:46:39,546 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:46:39,546 even if it does not contain any `.py` files. 2025-09-08T06:46:39,547 On the other hand, currently there is no concept of package data 2025-09-08T06:46:39,547 directory, all directories are treated like packages. 2025-09-08T06:46:39,547 ******************************************************************************** 2025-09-08T06:46:39,547 !! 2025-09-08T06:46:39,547 check.warn(importable) 2025-09-08T06:46:39,547 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'limix_inference.test' is absent from the `packages` configuration. 2025-09-08T06:46:39,547 !! 2025-09-08T06:46:39,547 ******************************************************************************** 2025-09-08T06:46:39,547 ############################ 2025-09-08T06:46:39,548 # Package would be ignored # 2025-09-08T06:46:39,548 ############################ 2025-09-08T06:46:39,548 Python recognizes 'limix_inference.test' as an importable package[^1], 2025-09-08T06:46:39,548 but it is absent from setuptools' `packages` configuration. 2025-09-08T06:46:39,548 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-08T06:46:39,548 package, please make sure that 'limix_inference.test' is explicitly added 2025-09-08T06:46:39,548 to the `packages` configuration field. 2025-09-08T06:46:39,548 Alternatively, you can also rely on setuptools' discovery methods 2025-09-08T06:46:39,548 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-08T06:46:39,549 instead of `find_packages(...)`/`find:`). 2025-09-08T06:46:39,549 You can read more about "package discovery" on setuptools documentation page: 2025-09-08T06:46:39,549 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-08T06:46:39,549 If you don't want 'limix_inference.test' to be distributed and are 2025-09-08T06:46:39,549 already explicitly excluding 'limix_inference.test' via 2025-09-08T06:46:39,549 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-08T06:46:39,549 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-08T06:46:39,549 combination with a more fine grained `package-data` configuration. 2025-09-08T06:46:39,550 You can read more about "package data files" on setuptools documentation page: 2025-09-08T06:46:39,550 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-08T06:46:39,550 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-08T06:46:39,550 even if it does not contain any `.py` files. 2025-09-08T06:46:39,550 On the other hand, currently there is no concept of package data 2025-09-08T06:46:39,550 directory, all directories are treated like packages. 2025-09-08T06:46:39,550 ******************************************************************************** 2025-09-08T06:46:39,551 !! 2025-09-08T06:46:39,551 check.warn(importable) 2025-09-08T06:46:39,551 creating build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:46:39,551 copying limix_inference/test/test_liknorm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/test 2025-09-08T06:46:39,551 creating build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:46:39,551 copying limix_inference/mean/test/test_linear_mean.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:46:39,551 copying limix_inference/mean/test/test_offset.py -> build/lib.linux-armv7l-cpython-313/limix_inference/mean/test 2025-09-08T06:46:39,551 creating build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:46:39,551 copying limix_inference/random/test/test_sampling.py -> build/lib.linux-armv7l-cpython-313/limix_inference/random/test 2025-09-08T06:46:39,551 creating build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:46:39,551 copying limix_inference/link/test/test_link.py -> build/lib.linux-armv7l-cpython-313/limix_inference/link/test 2025-09-08T06:46:39,552 creating build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:46:39,552 copying limix_inference/cov/test/test_eye_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:46:39,552 copying limix_inference/cov/test/test_linear_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:46:39,552 copying limix_inference/cov/test/test_sum_cov.py -> build/lib.linux-armv7l-cpython-313/limix_inference/cov/test 2025-09-08T06:46:39,552 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:46:39,552 copying limix_inference/lmm/_fastlmm/test/test_fastlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_fastlmm/test 2025-09-08T06:46:39,552 creating build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:46:39,552 copying limix_inference/lmm/_slowlmm/test/test_slowlmm.py -> build/lib.linux-armv7l-cpython-313/limix_inference/lmm/_slowlmm/test 2025-09-08T06:46:39,552 creating build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:46:39,552 copying limix_inference/glmm/_ep/test/test_bernoulli.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:46:39,553 copying limix_inference/glmm/_ep/test/test_binomial.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:46:39,553 copying limix_inference/glmm/_ep/test/test_poisson.py -> build/lib.linux-armv7l-cpython-313/limix_inference/glmm/_ep/test 2025-09-08T06:46:39,553 running build_ext 2025-09-08T06:46:39,553 generating cffi module 'build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c' 2025-09-08T06:46:39,553 creating build/temp.linux-armv7l-cpython-313 2025-09-08T06:46:39,864 building 'limix_inference.liknorm._ffi' extension 2025-09-08T06:46:39,865 creating build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313 2025-09-08T06:46:39,865 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/include -I/usr/include/python3.13 -c build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c -o build/temp.linux-armv7l-cpython-313/build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.o 2025-09-08T06:46:40,138 build/temp.linux-armv7l-cpython-313/limix_inference.liknorm._ffi.c:574:14: fatal error: liknorm/liknorm.h: No such file or directory 2025-09-08T06:46:40,138 574 | #include "liknorm/liknorm.h" 2025-09-08T06:46:40,138 | ^~~~~~~~~~~~~~~~~~~ 2025-09-08T06:46:40,139 compilation terminated. 2025-09-08T06:46:40,141 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-08T06:46:40,302 ERROR: python setup.py bdist_wheel exited with 1 2025-09-08T06:46:40,314 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-08T06:46:40,314 exec(compile('"'"''"'"''"'"' 2025-09-08T06:46:40,314 # This is -- a caller that pip uses to run setup.py 2025-09-08T06:46:40,314 # 2025-09-08T06:46:40,314 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-08T06:46:40,314 # import from `distutils.core` to work with newer packaging standards. 2025-09-08T06:46:40,314 # - It provides a clear error message when setuptools is not installed. 2025-09-08T06:46:40,314 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-08T06:46:40,314 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-08T06:46:40,314 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-08T06:46:40,314 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-08T06:46:40,314 import os, sys, tokenize, traceback 2025-09-08T06:46:40,314 2025-09-08T06:46:40,314 try: 2025-09-08T06:46:40,314 import setuptools 2025-09-08T06:46:40,314 except ImportError: 2025-09-08T06:46:40,314 print( 2025-09-08T06:46:40,314 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-08T06:46:40,314 "the build environment with exception:", 2025-09-08T06:46:40,314 file=sys.stderr, 2025-09-08T06:46:40,314 ) 2025-09-08T06:46:40,314 traceback.print_exc() 2025-09-08T06:46:40,314 sys.exit(1) 2025-09-08T06:46:40,314 2025-09-08T06:46:40,314 __file__ = %r 2025-09-08T06:46:40,314 sys.argv[0] = __file__ 2025-09-08T06:46:40,314 2025-09-08T06:46:40,314 if os.path.exists(__file__): 2025-09-08T06:46:40,314 filename = __file__ 2025-09-08T06:46:40,314 with tokenize.open(__file__) as f: 2025-09-08T06:46:40,314 setup_py_code = f.read() 2025-09-08T06:46:40,314 else: 2025-09-08T06:46:40,314 filename = "" 2025-09-08T06:46:40,314 setup_py_code = "from setuptools import setup; setup()" 2025-09-08T06:46:40,314 2025-09-08T06:46:40,314 exec(compile(setup_py_code, filename, "exec")) 2025-09-08T06:46:40,314 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ki62i5ut/limix-inference_62b4f6c2c910483291bd65fbab6a4bbe/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-l3xv8nn3[/] 2025-09-08T06:46:40,315 [bold magenta]cwd[/]: /tmp/pip-wheel-ki62i5ut/limix-inference_62b4f6c2c910483291bd65fbab6a4bbe/ 2025-09-08T06:46:40,315 Building wheel for limix-inference (setup.py): finished with status 'error' 2025-09-08T06:46:40,316 ERROR: Failed building wheel for limix-inference 2025-09-08T06:46:40,317 Running setup.py clean for limix-inference 2025-09-08T06:46:40,318 Running command python setup.py clean 2025-09-08T06:46:41,349 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-09-08T06:46:41,349 !! 2025-09-08T06:46:41,349 ******************************************************************************** 2025-09-08T06:46:41,349 Requirements should be satisfied by a PEP 517 installer. 2025-09-08T06:46:41,350 If you are using pip, you can try `pip install --use-pep517`. 2025-09-08T06:46:41,350 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-08T06:46:41,350 or your builds will no longer be supported. 2025-09-08T06:46:41,350 ******************************************************************************** 2025-09-08T06:46:41,350 !! 2025-09-08T06:46:41,350 dist.fetch_build_eggs(dist.setup_requires) 2025-09-08T06:46:41,449 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-09-08T06:46:41,450 warnings.warn(msg) 2025-09-08T06:46:41,922 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-08T06:46:41,923 !! 2025-09-08T06:46:41,923 ******************************************************************************** 2025-09-08T06:46:41,923 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-08T06:46:41,923 License :: OSI Approved :: MIT License 2025-09-08T06:46:41,923 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-08T06:46:41,923 ******************************************************************************** 2025-09-08T06:46:41,924 !! 2025-09-08T06:46:41,924 self._finalize_license_expression() 2025-09-08T06:46:41,998 running clean 2025-09-08T06:46:42,140 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:46:42,141 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-08T06:46:42,143 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-08T06:46:42,144 'build/scripts-3.13' does not exist -- can't clean it 2025-09-08T06:46:42,144 removing 'build' 2025-09-08T06:46:42,268 Failed to build limix-inference 2025-09-08T06:46:42,269 ERROR: Failed to build one or more wheels 2025-09-08T06:46:42,270 Exception information: 2025-09-08T06:46:42,270 Traceback (most recent call last): 2025-09-08T06:46:42,270 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-08T06:46:42,270 status = _inner_run() 2025-09-08T06:46:42,270 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-08T06:46:42,270 return self.run(options, args) 2025-09-08T06:46:42,270 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-08T06:46:42,270 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-08T06:46:42,270 return func(self, options, args) 2025-09-08T06:46:42,270 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-08T06:46:42,270 raise CommandError("Failed to build one or more wheels") 2025-09-08T06:46:42,270 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-08T06:46:42,274 Removed build tracker: '/tmp/pip-build-tracker-6g5v_pdh'